BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047101
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 106 bits (264), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L +GPWT EEDQK+++ +KK+G W +L K R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
E++ I + H +LGNRW+ IA LP RTDN +KN+WN+ IK+++
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 63 PDIKRGKFSLHEEQTIIQLHALLGNR-WSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118
PD+ +G ++ E+Q +I+L G + W+ IA HL R + + W+ H+ + +
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L +GPWT EEDQ+++++++K+G W + + R GK CR RW N+L P++K+ ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
E++ I Q H LGNRW+ IA LP RTDN +KN+WN+ +++++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L +GPWT EEDQ+++ ++K+G W S+ K R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 64 DIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI 112
++ +G ++ E+Q +I+L G RWS IA HL R + + W+ H+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L +GPWT EEDQ+++ ++K+G W S+ K R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L +GPWT EEDQ+++ ++K+G W S+ K R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLH 73
+GP+T ED + +Y+K++G +W + R K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLA 117
E++TI + + LG++WS IA +P RTDN IKN WN+ I KR++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSL 72
K+ +TPEED+ L + +HG W+ + R + CR RW NYL P I ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 HEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNT 110
E+ ++Q G +W+ IA P RTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112
K+ KF+ E++ + + A G+ W IAA P R + ++ W ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 18 TPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQT 77
T EED KL + ++G W + + + R + CR RW NY+ P ++ +S E+
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYW 108
+ Q +A G +W+ I+ L R+DN I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 65 IKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
+K+ ++ E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 64 DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
++K+ ++ E++ + Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
L +GPWT EEDQ++++ ++K+G W S+ K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI 112
+G ++ E+Q +I+L G RWS IA HL R + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
L +GPWT EEDQ+L+ ++K+G W S+ K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI 112
+G ++ E+Q +I+L G RWS IA HL R + + W+ H+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
L +GPWT EEDQ+++ ++K+G W S+ K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI 112
+G ++ E+Q +I+L G RWS IA HL R + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRS----LPEKADLQRCGKSCRLRWTNYLRPD 64
L + WT EED+KL ++++G W+ LP + D+Q C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQ-----CQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRS----LPEKADLQRCGKSCRLRWTNYLRPD 64
L + WT EED+KL ++++G W+ LP + D+Q C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQ-----CQHRWQKVLNPE 52
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 17 WTPEEDQKLLDYIKKHGHGSWRSL 40
WT EED+KLL + K+G+GSW +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 17 WTPEEDQKLLDYIKKHGHGSWRSL 40
WT EED+KLL + K+G+GSW +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 17 WTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
W ED+ L + K+G W + ++ K C+ RW +L P IK+ ++S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
pdb|1D6N|B Chain B, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
Length = 214
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 25 LLDYIKKHGHGSWRSLPEKADLQRCGKSC 53
LLDYIK S RS+P D R G C
Sbjct: 74 LLDYIKALNRNSDRSIPMTVDFIRLGSYC 102
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 17 WTPEEDQKLLDYIKKHGHGSWRSL----PEKADLQRCGKSCRLRWTNYL 61
WT EED++L +++ G W+ L P + D Q C+ RW L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQ-----CQYRWLRVL 54
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 69 KFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRP 128
K+++ E++ Q A G RW+ I+ + RT ++K+Y + K ++ + G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKETPNQ 69
Query: 129 K 129
K
Sbjct: 70 K 70
>pdb|1WBA|A Chain A, Winged Bean Albumin 1
Length = 175
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 23/78 (29%)
Query: 220 SIISFGDGSYL----------ESPPSILQFSEDRQQAAAMSS-----------LENMNKN 258
+I+SF DG+ + E P SI++ + + A ++SS LENM
Sbjct: 20 TIVSFSDGAGIDVVATGNENPEDPLSIVKSTRNIMYATSISSEDKTPPQPRNILENMRLK 79
Query: 259 LDFVYDAGGSAGDAWNIV 276
++F D GD W++V
Sbjct: 80 INFATDP--HKGDVWSVV 95
>pdb|1P4W|A Chain A, Solution Structure Of The Dna-Binding Domain Of The
Erwinia Amylovora Rcsb Protein
Length = 99
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQR 48
G +TPE KLL+ I G+G R P+++++ R
Sbjct: 11 GSYTPESVAKLLEKISAGGYGDKRLSPKESEVLR 44
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE 42
S TN K+ WT EE + + ++K+G G+W ++ +
Sbjct: 7 STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISK 42
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 215 CNINGSIISFGDGSYLESPPSILQFSED 242
N+ GS SFGDG+ L+S ++ F D
Sbjct: 204 VNLKGSSFSFGDGALLDSGTTLTYFPSD 231
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 225 GDGSYLESPPSILQFSEDRQQAAAMSSLENMNK 257
G GSY+E S+LQ +ED Q SL N+++
Sbjct: 248 GYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQ 280
>pdb|1T5J|A Chain A, Crystal Structure Of Ribosylglycohydrolase Mj1187 From
Methanococcus Jannaschii
Length = 313
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 242 DRQQAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEG 292
D + A + ++N N NLD++YD G+ +V S+ +NF EG
Sbjct: 196 DEEFAKKLLEIKNFN-NLDYIYDYFGTGVKTDEVVPSAIATYLLTDNFKEG 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,987,731
Number of Sequences: 62578
Number of extensions: 436216
Number of successful extensions: 1112
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 52
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)