Query 047101
Match_columns 344
No_of_seqs 310 out of 1564
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.8E-34 2.3E-38 233.1 8.8 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 2.5E-33 8.4E-38 239.0 9.2 111 14-125 2-112 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.8E-33 9.7E-38 231.0 7.7 104 14-118 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 6.5E-33 2.2E-37 235.1 7.8 109 7-116 20-128 (128)
5 1h89_C C-MYB, MYB proto-oncoge 100.0 2.5E-34 8.7E-39 251.9 -1.2 136 11-147 3-139 (159)
6 3osg_A MYB21; transcription-DN 100.0 1.4E-32 4.9E-37 233.0 9.2 105 8-114 5-109 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-30 3.9E-35 228.7 7.7 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.5E-25 8.6E-30 188.5 -1.3 107 40-147 1-108 (128)
9 2dim_A Cell division cycle 5-l 99.8 7.2E-22 2.5E-26 151.3 1.7 67 8-75 3-69 (70)
10 2dim_A Cell division cycle 5-l 99.7 4.6E-18 1.6E-22 130.1 5.2 65 62-126 4-69 (70)
11 2llk_A Cyclin-D-binding MYB-li 99.7 5.6E-18 1.9E-22 131.7 4.9 59 53-112 9-67 (73)
12 2din_A Cell division cycle 5-l 99.7 2.2E-17 7.5E-22 124.9 7.3 61 60-121 2-62 (66)
13 1ign_A Protein (RAP1); RAP1,ye 99.7 1.2E-17 4E-22 155.2 6.3 106 9-115 3-200 (246)
14 2cu7_A KIAA1915 protein; nucle 99.7 3E-17 1E-21 126.4 7.2 66 61-127 3-68 (72)
15 2juh_A Telomere binding protei 99.7 8.3E-18 2.9E-22 142.2 1.3 83 9-91 12-103 (121)
16 2d9a_A B-MYB, MYB-related prot 99.7 2E-17 6.8E-22 122.8 2.7 57 9-66 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.7 2.3E-17 8E-22 119.1 2.4 52 12-64 1-52 (52)
18 2roh_A RTBP1, telomere binding 99.6 6.1E-17 2.1E-21 137.1 3.7 80 9-88 26-114 (122)
19 2d9a_A B-MYB, MYB-related prot 99.6 1.2E-16 4E-21 118.7 4.3 55 62-116 3-58 (60)
20 3osg_A MYB21; transcription-DN 99.6 1.7E-17 5.6E-22 140.4 -0.7 86 62-147 6-91 (126)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 4E-17 1.4E-21 117.8 1.2 52 12-64 1-52 (52)
22 1gv2_A C-MYB, MYB proto-oncoge 99.6 1.5E-17 5E-22 135.9 -1.8 84 64-147 1-85 (105)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 5.5E-16 1.9E-20 111.8 6.0 50 65-114 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 7.6E-16 2.6E-20 117.5 6.5 62 60-121 3-67 (69)
25 1ity_A TRF1; helix-turn-helix, 99.6 1.1E-16 3.7E-21 122.2 1.6 63 9-71 5-68 (69)
26 1gvd_A MYB proto-oncogene prot 99.6 9.4E-16 3.2E-20 110.7 5.7 50 65-114 1-51 (52)
27 2k9n_A MYB24; R2R3 domain, DNA 99.6 6.5E-17 2.2E-21 133.0 -1.5 80 67-146 1-81 (107)
28 3zqc_A MYB3; transcription-DNA 99.6 3.4E-16 1.2E-20 133.0 1.9 82 67-148 2-84 (131)
29 1w0t_A Telomeric repeat bindin 99.6 3.1E-15 1.1E-19 108.5 6.2 49 66-114 1-52 (53)
30 1x41_A Transcriptional adaptor 99.6 3.5E-15 1.2E-19 111.1 6.0 53 62-114 3-56 (60)
31 3sjm_A Telomeric repeat-bindin 99.6 4.6E-16 1.6E-20 117.8 0.9 56 11-66 8-64 (64)
32 1x41_A Transcriptional adaptor 99.5 9.3E-16 3.2E-20 114.2 1.9 56 9-65 3-58 (60)
33 2yum_A ZZZ3 protein, zinc fing 99.5 6.5E-15 2.2E-19 113.8 4.8 58 62-119 3-66 (75)
34 3sjm_A Telomeric repeat-bindin 99.5 1.1E-14 3.6E-19 110.3 5.8 52 65-116 9-63 (64)
35 1w0t_A Telomeric repeat bindin 99.5 2.4E-15 8.1E-20 109.2 1.0 50 13-62 1-51 (53)
36 2din_A Cell division cycle 5-l 99.5 1.1E-15 3.6E-20 115.6 -1.2 58 8-68 3-60 (66)
37 2elk_A SPCC24B10.08C protein; 99.5 2.8E-14 9.7E-19 105.6 6.3 51 62-112 4-56 (58)
38 2yum_A ZZZ3 protein, zinc fing 99.5 2.2E-15 7.4E-20 116.5 0.0 61 8-69 2-67 (75)
39 2elk_A SPCC24B10.08C protein; 99.5 5.8E-15 2E-19 109.3 1.7 52 10-61 5-56 (58)
40 2ltp_A Nuclear receptor corepr 99.2 4.2E-15 1.5E-19 119.1 0.0 56 60-115 9-64 (89)
41 2cu7_A KIAA1915 protein; nucle 99.4 1.1E-14 3.7E-19 112.0 0.0 59 7-67 2-60 (72)
42 2aje_A Telomere repeat-binding 99.4 1.8E-13 6.2E-18 113.1 3.5 80 8-87 7-95 (105)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5E-13 1.7E-17 103.7 5.7 52 62-113 13-68 (73)
44 2ckx_A NGTRF1, telomere bindin 99.4 2.2E-13 7.7E-18 108.1 3.2 69 15-84 1-79 (83)
45 2llk_A Cyclin-D-binding MYB-li 99.3 1.8E-13 6.3E-18 106.2 2.2 59 5-67 14-72 (73)
46 1ign_A Protein (RAP1); RAP1,ye 99.3 7.6E-13 2.6E-17 123.1 4.1 80 63-146 4-89 (246)
47 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4.2E-17 102.8 4.6 48 64-111 15-62 (79)
48 2yus_A SWI/SNF-related matrix- 99.3 1.7E-12 5.8E-17 102.0 3.2 52 7-60 11-62 (79)
49 2juh_A Telomere binding protei 99.2 3.9E-12 1.3E-16 107.5 4.7 55 61-115 11-70 (121)
50 2ltp_A Nuclear receptor corepr 98.9 6.9E-13 2.4E-17 106.2 0.0 54 8-63 10-63 (89)
51 2ckx_A NGTRF1, telomere bindin 99.2 1.2E-11 4E-16 98.2 7.0 49 68-116 1-54 (83)
52 2aje_A Telomere repeat-binding 99.2 1.5E-11 5.1E-16 101.7 6.5 52 63-114 9-65 (105)
53 2cjj_A Radialis; plant develop 99.2 2.5E-11 8.7E-16 98.2 6.9 59 66-124 7-70 (93)
54 2roh_A RTBP1, telomere binding 99.2 1E-11 3.6E-16 105.1 4.4 53 63-115 27-84 (122)
55 1x58_A Hypothetical protein 49 99.2 4.1E-11 1.4E-15 90.1 6.4 49 66-114 7-58 (62)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.2 3.5E-12 1.2E-16 98.9 0.2 55 7-62 11-68 (73)
57 3hm5_A DNA methyltransferase 1 98.9 1.2E-09 4.2E-14 88.3 6.5 66 51-120 18-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.5E-14 81.2 5.8 47 66-112 11-57 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.8 2.2E-09 7.5E-14 82.9 4.8 50 64-114 5-58 (72)
60 2cjj_A Radialis; plant develop 98.8 5.3E-10 1.8E-14 90.4 -0.1 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.6 3.7E-08 1.3E-12 91.0 6.1 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.6 8.2E-09 2.8E-13 77.6 1.1 50 11-62 5-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.5 1.7E-08 5.9E-13 75.1 1.7 52 8-61 6-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.4 2.1E-07 7.1E-12 72.1 5.4 46 67-112 8-57 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.3 6.9E-08 2.4E-12 74.5 0.3 50 10-61 4-56 (72)
66 2xag_B REST corepressor 1; ami 98.3 3.6E-07 1.2E-11 92.7 4.8 45 68-112 381-425 (482)
67 1fex_A TRF2-interacting telome 98.3 5.3E-07 1.8E-11 67.0 4.4 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 1.3E-07 4.5E-12 70.2 0.2 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.1 4.9E-07 1.7E-11 70.0 0.7 48 14-62 8-58 (73)
70 1ug2_A 2610100B20RIK gene prod 98.0 5.3E-06 1.8E-10 66.6 5.5 47 69-115 35-84 (95)
71 2yqk_A Arginine-glutamic acid 98.0 9.8E-06 3.3E-10 60.6 6.6 50 62-111 4-54 (63)
72 2iw5_B Protein corest, REST co 98.0 1.6E-06 5.5E-11 80.1 1.8 50 11-62 130-179 (235)
73 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 9.9E-11 65.7 1.2 43 67-109 20-66 (74)
74 2lr8_A CAsp8-associated protei 97.1 1.9E-06 6.7E-11 65.6 0.0 44 69-113 16-62 (70)
75 4iej_A DNA methyltransferase 1 97.7 9.9E-05 3.4E-09 59.5 7.6 61 56-120 23-88 (93)
76 1ofc_X ISWI protein; nuclear p 97.7 6.9E-05 2.4E-09 72.1 7.6 100 14-114 110-275 (304)
77 4eef_G F-HB80.4, designed hema 97.6 1.4E-05 4.7E-10 61.9 0.9 44 14-58 20-66 (74)
78 2crg_A Metastasis associated p 97.5 0.00022 7.4E-09 54.4 6.2 44 67-110 8-52 (70)
79 4a69_C Nuclear receptor corepr 97.4 0.00016 5.5E-09 58.2 5.6 45 67-111 43-87 (94)
80 2yqk_A Arginine-glutamic acid 97.3 9.6E-05 3.3E-09 55.2 2.2 50 8-59 3-53 (63)
81 2xag_B REST corepressor 1; ami 96.9 0.00022 7.6E-09 72.4 1.7 48 12-61 378-425 (482)
82 3hm5_A DNA methyltransferase 1 96.9 0.00017 5.9E-09 58.1 0.7 49 12-61 28-80 (93)
83 2ebi_A DNA binding protein GT- 96.9 0.00082 2.8E-08 52.5 4.4 51 67-118 4-68 (86)
84 4a69_C Nuclear receptor corepr 96.4 0.00079 2.7E-08 54.1 1.1 44 14-59 43-86 (94)
85 4b4c_A Chromodomain-helicase-D 96.2 0.011 3.8E-07 52.8 7.8 46 68-113 135-195 (211)
86 2crg_A Metastasis associated p 96.2 0.0013 4.5E-08 50.0 1.2 44 14-59 8-52 (70)
87 2ebi_A DNA binding protein GT- 96.1 0.00045 1.5E-08 54.0 -2.0 49 13-61 3-63 (86)
88 2lr8_A CAsp8-associated protei 94.8 0.0014 4.9E-08 49.9 0.0 48 13-62 13-62 (70)
89 2y9y_A Imitation switch protei 95.6 0.028 9.6E-07 55.4 8.2 100 15-114 124-291 (374)
90 1ug2_A 2610100B20RIK gene prod 95.1 0.0044 1.5E-07 49.7 0.5 45 14-59 33-79 (95)
91 4b4c_A Chromodomain-helicase-D 93.8 0.044 1.5E-06 48.8 4.0 38 5-42 125-162 (211)
92 4iej_A DNA methyltransferase 1 92.4 0.033 1.1E-06 44.8 0.8 48 12-60 28-79 (93)
93 1irz_A ARR10-B; helix-turn-hel 92.2 0.36 1.2E-05 36.2 6.3 47 66-112 6-57 (64)
94 1ofc_X ISWI protein; nuclear p 91.7 0.29 1E-05 46.9 6.7 47 67-113 110-157 (304)
95 2xb0_X Chromo domain-containin 87.4 0.42 1.4E-05 45.1 4.0 29 15-43 169-197 (270)
96 1irz_A ARR10-B; helix-turn-hel 73.7 1.2 3.9E-05 33.4 1.3 48 11-59 4-55 (64)
97 2xb0_X Chromo domain-containin 70.0 9.6 0.00033 35.8 7.0 47 67-113 3-54 (270)
98 2o8x_A Probable RNA polymerase 54.5 15 0.00051 25.6 4.2 40 73-113 18-57 (70)
99 2lm1_A Lysine-specific demethy 52.7 24 0.0008 27.9 5.4 38 77-114 48-97 (107)
100 3hug_A RNA polymerase sigma fa 52.2 20 0.00069 26.9 4.8 39 73-112 40-78 (92)
101 2li6_A SWI/SNF chromatin-remod 51.1 11 0.00038 30.5 3.3 38 77-114 53-98 (116)
102 1u78_A TC3 transposase, transp 50.6 56 0.0019 25.6 7.5 87 15-106 5-98 (141)
103 2jrz_A Histone demethylase jar 49.9 22 0.00074 28.9 4.9 38 77-114 44-93 (117)
104 1ku3_A Sigma factor SIGA; heli 49.6 20 0.00068 25.7 4.2 43 73-117 13-59 (73)
105 2eqy_A RBP2 like, jumonji, at 46.8 28 0.00097 28.4 5.2 38 77-114 46-95 (122)
106 2rq5_A Protein jumonji; develo 46.6 3.7 0.00013 34.1 -0.3 45 36-83 65-113 (121)
107 2cxy_A BAF250B subunit, HBAF25 46.1 28 0.00095 28.5 5.0 38 77-114 55-104 (125)
108 3cz6_A DNA-binding protein RAP 45.7 16 0.00055 32.1 3.6 25 10-34 110-142 (168)
109 2y9y_A Imitation switch protei 45.6 35 0.0012 33.5 6.3 45 68-112 124-170 (374)
110 2p7v_B Sigma-70, RNA polymeras 43.7 20 0.00068 25.3 3.4 40 73-113 8-51 (68)
111 1kkx_A Transcription regulator 40.0 14 0.00049 30.4 2.3 38 78-115 53-98 (123)
112 2jxj_A Histone demethylase jar 37.0 18 0.00063 28.0 2.4 38 77-114 40-89 (96)
113 3e7l_A Transcriptional regulat 36.4 71 0.0024 22.4 5.4 42 73-123 19-60 (63)
114 1c20_A DEAD ringer protein; DN 36.1 50 0.0017 27.0 5.1 39 76-114 55-106 (128)
115 1x3u_A Transcriptional regulat 35.4 56 0.0019 23.2 4.8 41 70-113 17-57 (79)
116 2li6_A SWI/SNF chromatin-remod 35.2 4.9 0.00017 32.7 -1.3 39 24-63 53-98 (116)
117 2rq5_A Protein jumonji; develo 35.1 45 0.0015 27.4 4.6 75 14-114 7-96 (121)
118 2kk0_A AT-rich interactive dom 33.5 48 0.0016 27.8 4.6 38 77-114 68-118 (145)
119 3c57_A Two component transcrip 31.5 72 0.0024 24.2 5.0 46 69-118 27-72 (95)
120 2k27_A Paired box protein PAX- 31.3 1.7E+02 0.0058 23.7 7.7 77 15-96 24-111 (159)
121 1or7_A Sigma-24, RNA polymeras 30.7 64 0.0022 26.5 5.0 29 85-114 155-183 (194)
122 3cz6_A DNA-binding protein RAP 30.2 41 0.0014 29.5 3.6 17 63-79 110-126 (168)
123 1ig6_A MRF-2, modulator recogn 29.4 29 0.001 27.5 2.5 38 77-114 37-87 (107)
124 2jpc_A SSRB; DNA binding prote 29.4 1E+02 0.0035 20.6 5.1 37 75-113 3-39 (61)
125 1k78_A Paired box protein PAX5 29.2 1.2E+02 0.004 24.3 6.2 78 14-96 30-118 (149)
126 3ulq_B Transcriptional regulat 29.2 99 0.0034 23.4 5.5 44 67-113 27-70 (90)
127 1je8_A Nitrate/nitrite respons 28.3 73 0.0025 23.4 4.4 42 69-113 21-62 (82)
128 2q1z_A RPOE, ECF SIGE; ECF sig 28.3 44 0.0015 27.3 3.5 30 84-114 149-178 (184)
129 1tty_A Sigma-A, RNA polymerase 28.0 67 0.0023 23.8 4.2 39 74-113 22-64 (87)
130 2yqf_A Ankyrin-1; death domain 27.8 82 0.0028 24.9 4.9 35 71-106 14-48 (111)
131 1fse_A GERE; helix-turn-helix 26.7 87 0.003 21.7 4.4 41 69-112 11-51 (74)
132 2rnj_A Response regulator prot 24.8 78 0.0027 23.5 4.1 40 70-112 30-69 (91)
133 1xsv_A Hypothetical UPF0122 pr 23.4 1.1E+02 0.0038 24.1 4.9 39 74-113 29-67 (113)
134 1rp3_A RNA polymerase sigma fa 22.9 99 0.0034 26.0 4.9 36 77-113 194-229 (239)
135 2kk0_A AT-rich interactive dom 22.8 20 0.00068 30.3 0.3 53 24-76 68-133 (145)
136 3i4p_A Transcriptional regulat 22.4 49 0.0017 27.5 2.7 44 73-117 3-47 (162)
137 3mzy_A RNA polymerase sigma-H 21.9 90 0.0031 24.5 4.1 28 85-113 123-150 (164)
138 1ntc_A Protein (nitrogen regul 20.9 1.6E+02 0.0053 22.2 5.1 34 72-106 50-83 (91)
139 2o71_A Death domain-containing 20.4 1E+02 0.0035 24.8 4.1 28 77-105 26-53 (115)
140 2of5_H Leucine-rich repeat and 20.3 84 0.0029 25.2 3.6 31 75-106 13-43 (118)
141 2dbb_A Putative HTH-type trans 20.3 1.3E+02 0.0044 24.2 4.8 44 73-117 9-53 (151)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.8e-34 Score=233.11 Aligned_cols=105 Identities=43% Similarity=0.874 Sum_probs=99.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWS 90 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs 90 (344)
++++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101 91 AIAAHLPKRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 91 ~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (344)
.||++|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.5e-33 Score=239.00 Aligned_cols=111 Identities=36% Similarity=0.680 Sum_probs=106.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIA 93 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA 93 (344)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047101 94 AHLPKRTDNEIKNYWNTHIKKRLARMGIDPMT 125 (344)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e 125 (344)
++|||||++||++||+++|++++....++.+-
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999998887765443
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=2.8e-33 Score=230.98 Aligned_cols=104 Identities=30% Similarity=0.574 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIA 93 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA 93 (344)
||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101 94 AHLPKRTDNEIKNYWNTHIKKRLAR 118 (344)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (344)
++|||||++||++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999876554
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=6.5e-33 Score=235.14 Aligned_cols=109 Identities=40% Similarity=0.836 Sum_probs=102.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 047101 7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLG 86 (344)
Q Consensus 7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G 86 (344)
..+|++++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 346899999999999999999999999889999999998 9999999999999999999999999999999999999999
Q ss_pred CChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101 87 NRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 87 ~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (344)
++|+.||++|||||+++|++||+.++++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998764
No 5
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.5e-34 Score=251.88 Aligned_cols=136 Identities=25% Similarity=0.525 Sum_probs=92.0
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN-RW 89 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~-kW 89 (344)
++++++||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccccc
Q 047101 90 SAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLS 147 (344)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~l~ 147 (344)
..||.+|||||+.||++||+++|++.+++.+|+++++..+..++...|.+|..|+...
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l 139 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL 139 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999887653
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.4e-32 Score=233.03 Aligned_cols=105 Identities=34% Similarity=0.663 Sum_probs=100.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN 87 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~ 87 (344)
.+.+.+||+||+|||++|+++|++||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999998 9999999998 89999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 88 RWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
+|..||++|||||+++||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.1e-30 Score=228.71 Aligned_cols=108 Identities=42% Similarity=0.836 Sum_probs=103.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN 87 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~ 87 (344)
.+|++++|+||+|||++|+++|++||.++|..||..|+ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 46899999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101 88 RWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (344)
+|+.||++|||||+++||+||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=2.5e-25 Score=188.46 Aligned_cols=107 Identities=21% Similarity=0.450 Sum_probs=82.0
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101 40 LPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118 (344)
Q Consensus 40 IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (344)
||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 677887 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCCccccccc
Q 047101 119 MGIDPMTHRPKIPSLASADGDPKKASNLS 147 (344)
Q Consensus 119 ~~~~p~e~kp~~~~~~~~~~~~k~~s~l~ 147 (344)
.+|+++|+..+..++...|.+|..|+...
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l 108 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLL 108 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGS
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHC
Confidence 99999999999999999999999887653
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.2e-22 Score=151.32 Aligned_cols=67 Identities=27% Similarity=0.568 Sum_probs=64.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEE 75 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED 75 (344)
..+++++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46789999999999999999999999889999999999 99999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=130.08 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTH 126 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~ 126 (344)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++.+|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999999 8999999999999999999999999999999999999886
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-18 Score=131.67 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=47.2
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 53 CRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 53 Cr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
..-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999998643
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=124.94 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=58.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 047101 60 YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGI 121 (344)
Q Consensus 60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~ 121 (344)
+|+|.+++++||.|||++|+++|++||.+|..||+ |+|||++|||+||+.+|++.+++..-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999988653
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=1.2e-17 Score=155.23 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=91.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCC-----CCccccccccccccccccccccccccCCCCC-----------------
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHG-----SWRSLPEKADLQRCGKSCRLRWTNYLRPDIK----------------- 66 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~-----~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ik----------------- 66 (344)
.+.++|++||+|||++|+++|.++|.. .|..||+.|+ ||++.|||.||..+|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 457889999999999999999999764 2999999998 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 047101 67 ------------RGKFSLHEEQTIIQLHAL-L--------------------------------GN-------------- 87 (344)
Q Consensus 67 ------------rg~WT~EED~~Ll~lv~~-~--------------------------------G~-------------- 87 (344)
+..||.+||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1 11
Q ss_pred -----------ChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101 88 -----------RWSAIAAHLPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 88 -----------kWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (344)
.|..||+.+|+||.+.+|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999888654
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=3e-17 Score=126.44 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=60.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047101 61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHR 127 (344)
Q Consensus 61 L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~k 127 (344)
++|.+++++||.|||++|+++|.+||.+|..||++|||||++|||+||+.+|++.++. ++++.+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999888776 77766543
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.66 E-value=8.3e-18 Score=142.24 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=77.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYLR-----PDIKRG-KFSLHEEQTII 79 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L~-----P~ikrg-~WT~EED~~Ll 79 (344)
++..++++||+|||+.|+++|++||.++|..|+..+. .+|++.||++||.++|+ |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4678899999999999999999999999999999852 38999999999999998 999999 99999999999
Q ss_pred HHHHHhCCChhH
Q 047101 80 QLHALLGNRWSA 91 (344)
Q Consensus 80 ~lv~~~G~kWs~ 91 (344)
.++..+|++|.+
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999977
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2e-17 Score=122.85 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=54.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCC
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIK 66 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ik 66 (344)
.|.+++++||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999879999999998 99999999999999999876
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=2.3e-17 Score=119.15 Aligned_cols=52 Identities=44% Similarity=0.944 Sum_probs=49.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64 (344)
Q Consensus 12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ 64 (344)
|+||+||+|||++|+++|.+||.++|..||..|+ +|+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999888999999998 999999999999999985
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=6.1e-17 Score=137.15 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=73.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---cccccccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYL-----RPDIKRGKFSLHE-EQTII 79 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L-----~P~ikrg~WT~EE-D~~Ll 79 (344)
+...++++||+|||+.|+++|++||.++|..|+..+. .+|++.||++||.+++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3467789999999999999999999999999998741 3899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 047101 80 QLHALLGNR 88 (344)
Q Consensus 80 ~lv~~~G~k 88 (344)
+++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-16 Score=118.68 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (344)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998754
No 20
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.63 E-value=1.7e-17 Score=140.37 Aligned_cols=86 Identities=15% Similarity=0.273 Sum_probs=80.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCc
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPK 141 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k 141 (344)
.+..++|+||+|||++|+++|.+||.+|..||..|+|||..||+.||.++|.+.+++.+|+++|+..+..++...|.+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 047101 142 KASNLS 147 (344)
Q Consensus 142 ~~s~l~ 147 (344)
.|+...
T Consensus 86 ~Ia~~l 91 (126)
T 3osg_A 86 IIAKFF 91 (126)
T ss_dssp HHHTTS
T ss_pred HHHHHc
Confidence 887654
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=4e-17 Score=117.82 Aligned_cols=52 Identities=31% Similarity=0.745 Sum_probs=48.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64 (344)
Q Consensus 12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ 64 (344)
+++++||+|||++|+++|++||.++|..||..|+ +|+++||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999985
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.62 E-value=1.5e-17 Score=135.89 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCcc
Q 047101 64 DIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKK 142 (344)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~ 142 (344)
++++|+||+|||++|+++|.+||. +|..||.+|||||+.||++||.++|.+.+++.+|+++++..+..++...|.+|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999996 7999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 047101 143 ASNLS 147 (344)
Q Consensus 143 ~s~l~ 147 (344)
|+...
T Consensus 81 Ia~~l 85 (105)
T 1gv2_A 81 IAKLL 85 (105)
T ss_dssp HHTTC
T ss_pred HHHHc
Confidence 87653
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=5.5e-16 Score=111.78 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 65 IKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999875
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=7.6e-16 Score=117.51 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=56.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHHHHHhCCC
Q 047101 60 YLRPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKKRLARMGI 121 (344)
Q Consensus 60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l~k~~~ 121 (344)
...|..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 346678899999999999999999999 79999999999 999999999999999998877654
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.1e-16 Score=122.21 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=58.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccCCCCCCCCCC
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLRPDIKRGKFS 71 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~P~ikrg~WT 71 (344)
++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999998899999999986 8999999999999999999887653
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=9.4e-16 Score=110.68 Aligned_cols=50 Identities=32% Similarity=0.688 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 65 IKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 699999999999999999999999865
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.58 E-value=6.5e-17 Score=132.97 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccc
Q 047101 67 RGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASN 145 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~ 145 (344)
+|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+++.+|+++++..+..++...|.+|..|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 579999999999999999995 8999999999999999999999999999999999999999999999999999998876
Q ss_pred c
Q 047101 146 L 146 (344)
Q Consensus 146 l 146 (344)
.
T Consensus 81 ~ 81 (107)
T 2k9n_A 81 F 81 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.57 E-value=3.4e-16 Score=132.98 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccc
Q 047101 67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASN 145 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~ 145 (344)
+|+||+|||++|+++|.+|| ++|..||.+|||||..||+.||.++|.+.+.+.+|+++++..+..++...|.+|..|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999 78999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 047101 146 LSH 148 (344)
Q Consensus 146 l~h 148 (344)
...
T Consensus 82 ~l~ 84 (131)
T 3zqc_A 82 LIP 84 (131)
T ss_dssp TST
T ss_pred HcC
Confidence 653
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=3.1e-15 Score=108.55 Aligned_cols=49 Identities=29% Similarity=0.431 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHH
Q 047101 66 KRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk 114 (344)
++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999874
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.5e-15 Score=111.07 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
.+.+.+++||+|||++|+++|++|| ++|..||++|++||+.||++||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 8999999999999999999999998753
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=4.6e-16 Score=117.76 Aligned_cols=56 Identities=23% Similarity=0.456 Sum_probs=49.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccCCCCC
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLRPDIK 66 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~P~ik 66 (344)
..+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 467899999999999999999999899999988643 79999999999999998763
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.3e-16 Score=114.17 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=52.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCC
Q 047101 9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDI 65 (344)
Q Consensus 9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~i 65 (344)
.+.+++++||+|||++|+++|++||.++|..||+.|+ +|+++||+.||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 3689999999999999999999999889999999998 8999999999999998753
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.5e-15 Score=113.83 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG------NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARM 119 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~ 119 (344)
+|.+.+++||.|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|.+.++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998766543
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.1e-14 Score=110.27 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHHHH
Q 047101 65 IKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l 116 (344)
.++++||+|||++|+++|.+|| ++|..||++++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 68999999876 9999999999999988654
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=2.4e-15 Score=109.17 Aligned_cols=50 Identities=28% Similarity=0.538 Sum_probs=46.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccC
Q 047101 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLR 62 (344)
Q Consensus 13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~ 62 (344)
++|+||+|||++|+++|++||.++|..||..+++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999986 6999999999999875
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-15 Score=115.64 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=53.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCC
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRG 68 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg 68 (344)
..|.+++++||+|||++|+++|++||. +|..||. ++ +|+++||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 468999999999999999999999998 9999999 66 7999999999999999877664
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=2.8e-14 Score=105.59 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHHH
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHI 112 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~~~L 112 (344)
...+.+++||+|||++|+++|++|| ++|..||++|+ +||+.||++||++++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456788999999999999999999 89999999999 999999999998764
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-15 Score=116.53 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=56.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCccccccccccccccccccccccccCCCCCCCC
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGH-----GSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGK 69 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~-----~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~ 69 (344)
.+|++++++||+|||++|+++|.+||. .+|..||+.|+ +|++.||+.||.+||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999996 68999999999 99999999999999998877764
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.8e-15 Score=109.31 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=48.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101 10 NGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 10 ~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L 61 (344)
..+.+++||+|||++|+++|++||.++|..||+.|+.+|+++||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999998899999999987899999999999875
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4.2e-15 Score=119.13 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=52.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101 60 YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (344)
.+.|.+++++||.|||++|+++|.+||++|..||.+|+|||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999988753
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.1e-14 Score=112.05 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=54.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCC
Q 047101 7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKR 67 (344)
Q Consensus 7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikr 67 (344)
+..|.+++++||+|||++|+++|++||. +|..||..|+ +|++.||+.||.++|++.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999998 9999999998 999999999999999876665
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=1.8e-13 Score=113.10 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=68.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYL-----RPDIKRGKFSLHEEQT-I 78 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L-----~P~ikrg~WT~EED~~-L 78 (344)
.+...++++||+|||+.|+++|++||.++|..|+..+. .+||+.+|++||.+++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 35678899999999999999999999999999998752 3899999999999998 6999999888887765 8
Q ss_pred HHHHHHhCC
Q 047101 79 IQLHALLGN 87 (344)
Q Consensus 79 l~lv~~~G~ 87 (344)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=5e-13 Score=103.73 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.+.+.+++||.+||++|++++.+|| ++|.+||++|||||.+||++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999 789999999999999999999998764
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.36 E-value=2.2e-13 Score=108.12 Aligned_cols=69 Identities=23% Similarity=0.511 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 047101 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEK----ADLQRCGKSCRLRWTNYL-----RPDIKRG-KFSLHEEQTIIQLHAL 84 (344)
Q Consensus 15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~----~~~~Rt~kQCr~Rw~n~L-----~P~ikrg-~WT~EED~~Ll~lv~~ 84 (344)
++||+|||++|+++|++||.|+|..|++. ++ +||+.+|++||.+++ +|.+++| +...+....++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999985 55 899999999999987 6777776 5777777889988865
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=106.18 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.2
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCC
Q 047101 5 PCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKR 67 (344)
Q Consensus 5 pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikr 67 (344)
--...|.+++|+||+|||++|+++|++||. +|..||+.+ +|++.||+.||.. |......
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 345679999999999999999999999997 699999999 7999999999984 5444443
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.31 E-value=7.6e-13 Score=123.06 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=63.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccC
Q 047101 63 PDIKRGKFSLHEEQTIIQLHALLGNR------WSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASA 136 (344)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~ 136 (344)
+.+++++||+|||++|+++|.++|++ |..||++|||||++|||+||+.+|++++... |+..++..++....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 35678999999999999999999975 9999999999999999999999999998844 77666665543333
Q ss_pred CCCCcccccc
Q 047101 137 DGDPKKASNL 146 (344)
Q Consensus 137 ~~~~k~~s~l 146 (344)
| .|..++.+
T Consensus 81 G-n~ikis~l 89 (246)
T 1ign_A 81 G-NLIKTKVL 89 (246)
T ss_dssp S-CBCEESSC
T ss_pred C-Cceeeecc
Confidence 3 37766633
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=102.82 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHH
Q 047101 64 DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH 111 (344)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~ 111 (344)
...+++||.|||++|+++|++||++|..||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999765
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=102.04 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=48.4
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101 7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60 (344)
Q Consensus 7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~ 60 (344)
+.+....+++||+|||++|+++|++|| ++|..||+.++ +|++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 456677889999999999999999999 69999999999 89999999999998
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=3.9e-12 Score=107.53 Aligned_cols=55 Identities=25% Similarity=0.481 Sum_probs=50.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 047101 61 LRPDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 61 L~P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~ 115 (344)
+.+..++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 556778999999999999999999996 99999998 48999999999999999753
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.89 E-value=6.9e-13 Score=106.24 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=50.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCC
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP 63 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P 63 (344)
..|++++|+||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 467999999999999999999999998 8999999998 99999999999999864
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.24 E-value=1.2e-11 Score=98.19 Aligned_cols=49 Identities=24% Similarity=0.502 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 047101 68 GKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKRL 116 (344)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l 116 (344)
.+||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999996 899999999999999997553
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.21 E-value=1.5e-11 Score=101.65 Aligned_cols=52 Identities=27% Similarity=0.478 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhC----CCCCHHHHHHHHHHHHHH
Q 047101 63 PDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHL----PKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk 114 (344)
+..++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||.++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999996 999999965 899999999999998864
No 53
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.19 E-value=2.5e-11 Score=98.21 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHHHH-HHhCCCCCC
Q 047101 66 KRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIKKR-LARMGIDPM 124 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~-l~k~~~~p~ 124 (344)
.+++||.|||++|++++.+|| ++|.+||++|||||++||++||+.+++.. ....+..|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~ 70 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 367899999999999999996 68999999999999999999999988654 334444443
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.18 E-value=1e-11 Score=105.05 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 047101 63 PDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~ 115 (344)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||.++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456889999999999999999995 99999987 48999999999999999654
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.17 E-value=4.1e-11 Score=90.07 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHh---hhCCCCCHHHHHHHHHHHHHH
Q 047101 66 KRGKFSLHEEQTIIQLHALLGNRWSAIA---AHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA---~~LpgRT~~qcKnRW~~~Lkk 114 (344)
.+.+||+|||+.|++.|++||.+|..|+ .++++||.-++|+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 578999999999999988753
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=3.5e-12 Score=98.93 Aligned_cols=55 Identities=13% Similarity=0.343 Sum_probs=49.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCCccccccccccccccccccccccccC
Q 047101 7 SDTNGLKRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
-+++...+++||+|||++|+++|.+||. .+|..||..|+ +|+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999993 47999999999 9999999999998764
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=88.32 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=59.6
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhC-----CCCCHHHHHHHHHHHHHHHHHhCC
Q 047101 51 KSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHL-----PKRTDNEIKNYWNTHIKKRLARMG 120 (344)
Q Consensus 51 kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~L-----pgRT~~qcKnRW~~~Lkk~l~k~~ 120 (344)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++-+...+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999976 79999999999999999999999999999 589999999999999987777664
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=81.23 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
..++||+||++++++++.+||.+|..||.+||+||..||..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999997654
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=2.2e-09 Score=82.94 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 64 DIKRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
..+.+.||.|||++|.+++.+|+ .+|.+||.+| |||..||++||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6799999998 99999999999887655
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.80 E-value=5.3e-10 Score=90.44 Aligned_cols=48 Identities=10% Similarity=0.364 Sum_probs=43.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccccccccccccccccccccccc
Q 047101 13 KRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 13 kKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L 61 (344)
.+++||+|||++|++++.+|+. ..|..||..++ +|+.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3689999999999999999973 47999999999 999999999998764
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.61 E-value=3.7e-08 Score=91.03 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
..++||.||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999987753
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.60 E-value=8.2e-09 Score=77.55 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=44.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccc---cccccccccccccccccccC
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE---KADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~---~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
..++++||+|||+.|++.|++||. +|..|+. .+. +|+..++++||+++.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 347899999999999999999998 9999994 444 8999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.7e-08 Score=75.11 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L 61 (344)
++..-..++||+||++++++++.+||. +|..||..++ +|+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 444556799999999999999999995 9999998888 999999999997543
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=2.1e-07 Score=72.14 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
...||.+|+++|.+++..|+ .+|..||.++||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45799999999999999998 46999999999999999999998774
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=6.9e-08 Score=74.50 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCCcccccccccccccccccccccccc
Q 047101 10 NGLKRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 10 ~~lkKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L 61 (344)
.+.+.+.||.|||++|.+++.+|+. ..|..||+.+ +|+.++|+.||..+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 3556789999999999999999984 4699999997 599999999998754
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.31 E-value=3.6e-07 Score=92.68 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 68 GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
..||.+|-.++++++.+||.+|..||++++.||..|||++|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.30 E-value=5.3e-07 Score=66.96 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhHHhh-hCCCCCHHHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALL--------GNR-WSAIAA-HLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~LpgRT~~qcKnRW~~~Lk 113 (344)
|.+||.|||+.|++.|.++ |+. |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 433 999999 8999999999999988764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.25 E-value=1.3e-07 Score=70.22 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCccccc-cccccccccccccccccccC
Q 047101 14 RGPWTPEEDQKLLDYIKKH--------GHGSWRSLPE-KADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~--------G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
|.+||+|||+.|+++|.+| |..-|..|++ .++ +++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 676 9999999999998875
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.11 E-value=4.9e-07 Score=70.04 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCccccccccccccccccccccccccC
Q 047101 14 RGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
...||.+|+++|.+++..|+. +.|..||..++ +|+..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 367999999999999999975 46999999999 8999999999987754
No 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.04 E-value=5.3e-06 Score=66.58 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101 69 KFSLHEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (344)
-||.|||..||...++-|. .|..||+.|.+|+.+||++||+.+++--
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5999999999999999985 7999999999999999999999988643
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=9.8e-06 Score=60.62 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHHH
Q 047101 62 RPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNTH 111 (344)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~~ 111 (344)
.|.++...||+||-++..+.+.+||.+|..|++ .|++||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 467788899999999999999999999999999 59999999999988643
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.99 E-value=1.6e-06 Score=80.11 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=45.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
....++||+||++++++++.+||. +|..||+.++ +|+..||+.+|+++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345689999999999999999996 9999999999 9999999999998764
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.88 E-value=2.9e-06 Score=65.66 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWN 109 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~ 109 (344)
...||.+|+++|.++...|+ .+|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 45799999999999999998 47999999999999999999884
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.08 E-value=1.9e-06 Score=65.62 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 69 KFSLHEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
-||.|||..|+..+++-|. .|..||+.| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 799999999 9999999999998875
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.71 E-value=9.9e-05 Score=59.53 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 047101 56 RWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLP-----KRTDNEIKNYWNTHIKKRLARMG 120 (344)
Q Consensus 56 Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk~l~k~~ 120 (344)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||+.+.++-++...
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4555554 3589999999999999999999999998874 79999999999998887766543
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.68 E-value=6.9e-05 Score=72.09 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=78.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccc-------cccc---------------------------
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRL-------RWTN--------------------------- 59 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~-------Rw~n--------------------------- 59 (344)
-+.||..|...++.++.+||..+|..||..++ +++...++. ||..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999997 777766641 2210
Q ss_pred ----------------ccCCCCCCCCCCHHHHHHHHHHHHHhCC----ChhHHhh------------hCCCCCHHHHHHH
Q 047101 60 ----------------YLRPDIKRGKFSLHEEQTIIQLHALLGN----RWSAIAA------------HLPKRTDNEIKNY 107 (344)
Q Consensus 60 ----------------~L~P~ikrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~LpgRT~~qcKnR 107 (344)
+..+..+...||.+||..||-++.+||- .|..|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0012234457999999999999999994 6999962 3467999999999
Q ss_pred HHHHHHH
Q 047101 108 WNTHIKK 114 (344)
Q Consensus 108 W~~~Lkk 114 (344)
..++++-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.59 E-value=1.4e-05 Score=61.87 Aligned_cols=44 Identities=11% Similarity=0.310 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CCccccccccccccccccccccc
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHG---SWRSLPEKADLQRCGKSCRLRWT 58 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~---~W~~IA~~~~~~Rt~kQCr~Rw~ 58 (344)
.+.||.||+++|.+++.+|+.+ .|.+||..++ +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4679999999999999999764 6999999999 899999999985
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.47 E-value=0.00022 Score=54.40 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNT 110 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~ 110 (344)
...||+||-++..+.+.+||.+|..|++ .||+||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999873
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.45 E-value=0.00016 Score=58.20 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH 111 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~ 111 (344)
...||+||.++..+.+..||.+|..||..||+||..+|-.+|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 358999999999999999999999999999999999999988643
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=9.6e-05 Score=55.16 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc-ccccccccccccccccc
Q 047101 8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE-KADLQRCGKSCRLRWTN 59 (344)
Q Consensus 8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n 59 (344)
..|.++...||+||-++..+++.+||. +|..|++ .++ .|+..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 457888899999999999999999997 9999998 477 8999999887754
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.94 E-value=0.00022 Score=72.37 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=43.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L 61 (344)
....+||.||-+++++++.+||. +|..||..++ +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45689999999999999999996 9999999999 899999999987653
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00017 Score=58.14 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=42.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccc----cccccccccccccccc
Q 047101 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD----LQRCGKSCRLRWTNYL 61 (344)
Q Consensus 12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~----~~Rt~kQCr~Rw~n~L 61 (344)
|+..+||.||++.|++++++|+- .|..|+..+. .+|+..+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999997 9999999983 2699999999998653
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.91 E-value=0.00082 Score=52.49 Aligned_cols=51 Identities=14% Similarity=0.419 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhHHhhhCC----CCCHHHHHHHHHHHHHHHHHh
Q 047101 67 RGKFSLHEEQTIIQLHALLG----------NRWSAIAAHLP----KRTDNEIKNYWNTHIKKRLAR 118 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~Lp----gRT~~qcKnRW~~~Lkk~l~k 118 (344)
...||.+|-..||+++..+. ..|..||..|. .||+.||+++|.++.+ ..++
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k-~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK-EFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHH
Confidence 45799999999999997632 14999999873 6999999999987664 4444
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.40 E-value=0.00079 Score=54.11 Aligned_cols=44 Identities=11% Similarity=0.302 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccc
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTN 59 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n 59 (344)
...||+||.++..+.+..||. +|..|++.++ .|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 367999999999999999996 9999999998 9999999987753
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.25 E-value=0.011 Score=52.80 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhHHhh--hC------------CCCCHHHHHHHHHHHHH
Q 047101 68 GKFSLHEEQTIIQLHALLG-NRWSAIAA--HL------------PKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~kWs~IA~--~L------------pgRT~~qcKnRW~~~Lk 113 (344)
..||.+||..|+..+.+|| ++|..|-. .| ..++...+..|-..+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3599999999999999999 99999964 21 12566789999877765
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.18 E-value=0.0013 Score=50.03 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccc-ccccccccccccccccc
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPE-KADLQRCGKSCRLRWTN 59 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n 59 (344)
...||+||-++..+++.+||. +|..|+. .++ +|+..+|..-|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 468999999999999999997 9999998 477 9999999987753
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.07 E-value=0.00045 Score=54.03 Aligned_cols=49 Identities=20% Similarity=0.566 Sum_probs=39.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCccccccc---ccccccccccccccccc
Q 047101 13 KRGPWTPEEDQKLLDYIKKHGH---------GSWRSLPEKA---DLQRCGKSCRLRWTNYL 61 (344)
Q Consensus 13 kKg~WT~EEDekL~~lV~k~G~---------~~W~~IA~~~---~~~Rt~kQCr~Rw~n~L 61 (344)
+...||.+|-..|+++...+.. ..|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999876421 1599999885 35799999999998764
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.84 E-value=0.0014 Score=49.91 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=41.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccccccccccccccC
Q 047101 13 KRGPWTPEEDQKLLDYIKKHGH--GSWRSLPEKADLQRCGKSCRLRWTNYLR 62 (344)
Q Consensus 13 kKg~WT~EEDekL~~lV~k~G~--~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~ 62 (344)
.--.||.|||..|+..+++.|. .-|..||..+ +|++.|+..||+..+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3357999999999999999986 3699999888 4999999999987654
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.63 E-value=0.028 Score=55.40 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccc-------cccccc---------------------------
Q 047101 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCR-------LRWTNY--------------------------- 60 (344)
Q Consensus 15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr-------~Rw~n~--------------------------- 60 (344)
+.||.-|=..++.+..+||..+-..||..|+.+++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988889998886345554444 111110
Q ss_pred -------------c----CCCC-CCCCCCHHHHHHHHHHHHHhC----CChhHHhhh------------CCCCCHHHHHH
Q 047101 61 -------------L----RPDI-KRGKFSLHEEQTIIQLHALLG----NRWSAIAAH------------LPKRTDNEIKN 106 (344)
Q Consensus 61 -------------L----~P~i-krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------LpgRT~~qcKn 106 (344)
| .+.. +...||.+||..||-++.+|| +.|..|-.. |..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0111 344699999999999999999 569999433 35799999999
Q ss_pred HHHHHHHH
Q 047101 107 YWNTHIKK 114 (344)
Q Consensus 107 RW~~~Lkk 114 (344)
|..++|+-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999954
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.14 E-value=0.0044 Score=49.70 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccccccccccccccc
Q 047101 14 RGPWTPEEDQKLLDYIKKHGH--GSWRSLPEKADLQRCGKSCRLRWTN 59 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~--~~W~~IA~~~~~~Rt~kQCr~Rw~n 59 (344)
---||.|||..|+...++.|. .-|..||+.++ +|+..|+.+|++.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 357999999999999999975 36999999998 8999999999976
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.84 E-value=0.044 Score=48.83 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=31.2
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc
Q 047101 5 PCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE 42 (344)
Q Consensus 5 pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~ 42 (344)
|++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44555554556799999999999999999999999854
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.40 E-value=0.033 Score=44.83 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=40.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccc----ccccccccccccccc
Q 047101 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD----LQRCGKSCRLRWTNY 60 (344)
Q Consensus 12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~----~~Rt~kQCr~Rw~n~ 60 (344)
|+...||.||...|++++++|.- .|-.|+.... ..|+..+.++||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999996 9999998865 258888888888764
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.21 E-value=0.36 Score=36.17 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hhHHhhhC--CCCCHHHHHHHHHHHH
Q 047101 66 KRGKFSLHEEQTIIQLHALLGNR---WSAIAAHL--PKRTDNEIKNYWNTHI 112 (344)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~~~L 112 (344)
.+-.||+|..+..+++|.++|.. +..|-+.| +|.|..+|+.+.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999954 78998876 6899999999876543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.75 E-value=0.29 Score=46.93 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.+.||..+....+.++.+|| ..|..||..|+|+|..+|+.++.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 35799999999999999999 689999999999999999776655553
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.35 E-value=0.42 Score=45.07 Aligned_cols=29 Identities=45% Similarity=0.757 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 047101 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEK 43 (344)
Q Consensus 15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~ 43 (344)
..|+.+||..|+..|.+||.|+|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999543
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=73.67 E-value=1.2 Score=33.40 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---Cccccccccc-ccccccccccccc
Q 047101 11 GLKRGPWTPEEDQKLLDYIKKHGHGS---WRSLPEKADL-QRCGKSCRLRWTN 59 (344)
Q Consensus 11 ~lkKg~WT~EEDekL~~lV~k~G~~~---W~~IA~~~~~-~Rt~kQCr~Rw~n 59 (344)
.-.+-.||+|..++.+++|++.|. + +..|.+.|+. +.+..++.-|.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345678999999999999999994 4 4566665552 4566666554433
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=69.98 E-value=9.6 Score=35.77 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChhHHhh--hCCCCCHHHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLG---NRWSAIAA--HLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~LpgRT~~qcKnRW~~~Lk 113 (344)
++.||..|-..|+..+.+|| .+|..|+. .|+.++...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 68999975 4789999999998887775
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.53 E-value=15 Score=25.59 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
+.+..++.++-..|-.+.+||..| |-+...|+.+....++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455566667667789999999999 8899999887766553
No 99
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.65 E-value=24 Score=27.92 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCCCC----HHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~~Lkk 114 (344)
.|..+|.+.| +.|..||..|.--. ..++|..|..+|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4667777777 47999999994322 56889999988864
No 100
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.23 E-value=20 Score=26.93 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
+.+..++.++-..|-.-..||+.| |-+...|+.+....+
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 345556666666788899999999 889999988876544
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.15 E-value=11 Score=30.52 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
.|..+|...| +.|..||..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3777788877 3799999998544478999999988854
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.62 E-value=56 Score=25.57 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-CC
Q 047101 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCR---LRWTNYL--RPDIKRGKFSLHEEQTIIQLHALLG-NR 88 (344)
Q Consensus 15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr---~Rw~n~L--~P~ikrg~WT~EED~~Ll~lv~~~G-~k 88 (344)
...|.++-..++.++. .|. .-..||..++. +...++ .+|..+- .........+.+++..|+++ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 3478888888888774 453 67889988873 333332 2222211 11112235788888888877 3333 34
Q ss_pred hhHHhhhCCC-CCHHHHHH
Q 047101 89 WSAIAAHLPK-RTDNEIKN 106 (344)
Q Consensus 89 Ws~IA~~Lpg-RT~~qcKn 106 (344)
-..|+..|.- -+...|..
T Consensus 80 ~~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILN 98 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHH
Confidence 4678887721 45555543
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=49.89 E-value=22 Score=28.87 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCCCC----HHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|..|+..|.--. ..++|..|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777788877 47999999983322 56889999988864
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.63 E-value=20 Score=25.74 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH----hCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHAL----LGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLA 117 (344)
Q Consensus 73 EED~~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~ 117 (344)
+.+..++.++-. .|-.+.+||..| |-+...|+.+....++ +++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~-kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALR-KLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH-HHH
Confidence 344555656554 578899999999 8999999998766653 444
No 105
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.77 E-value=28 Score=28.39 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCCC--C--HHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPKR--T--DNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgR--T--~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|..|+..|.-- + ...+|..|..+|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4677777777 3799999998332 1 46889999988865
No 106
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.57 E-value=3.7 Score=34.08 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCccccccccccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 047101 36 SWRSLPEKADLQRCG----KSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHA 83 (344)
Q Consensus 36 ~W~~IA~~~~~~Rt~----kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~ 83 (344)
.|..|+..++...+. ...+..|.++|.|-- .++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 699999999865432 456788999987632 378888888876654
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=46.07 E-value=28 Score=28.50 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCCC----CHHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPKR----TDNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgR----T~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|..||..|.-- ...++|..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777777 4799999998432 256889999998875
No 108
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=45.67 E-value=16 Score=32.06 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=20.0
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 047101 10 NGLKRGPWTPEEDQKLL--------DYIKKHGH 34 (344)
Q Consensus 10 ~~lkKg~WT~EEDekL~--------~lV~k~G~ 34 (344)
|.=..|-||+|+|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 34457999999999887 67888874
No 109
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=45.57 E-value=35 Score=33.53 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHHH
Q 047101 68 GKFSLHEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHI 112 (344)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~~~L 112 (344)
+.||.-|=..++.+..+|| ..-..||..|. |+|..+|+.+.....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4699999999999999999 56999999997 999999995444333
No 110
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.69 E-value=20 Score=25.34 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH----HhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHA----LLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 73 EED~~Ll~lv~----~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
+.+..++.++- ..|-.+.+||+.| |-+...|+.+....++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445555554 3478899999999 8999999998776653
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=39.98 E-value=14 Score=30.41 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=29.2
Q ss_pred HHHHHHHhC--------CChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101 78 IIQLHALLG--------NRWSAIAAHLPKRTDNEIKNYWNTHIKKR 115 (344)
Q Consensus 78 Ll~lv~~~G--------~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (344)
|..+|.+.| +.|..|+..|.--....+|..|..+|.+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 666666666 25999999984444899999999999764
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.96 E-value=18 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCC----CCHHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPK----RTDNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~Lpg----RT~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|.+|+..|.- -...++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3667777776 479999998832 1256888888877754
No 113
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.42 E-value=71 Score=22.43 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 047101 73 HEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDP 123 (344)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p 123 (344)
-|.+.|.++...++++..+.|+.| |=+.. .|..++++.++.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~--------tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS--------NLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH--------HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH--------HHHHHHHHhCCCC
Confidence 477788899999999999999988 44443 4556677777654
No 114
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=36.11 E-value=50 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHhC--------CChhHHhhhCC--CC---CHHHHHHHHHHHHHH
Q 047101 76 QTIIQLHALLG--------NRWSAIAAHLP--KR---TDNEIKNYWNTHIKK 114 (344)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~Lp--gR---T~~qcKnRW~~~Lkk 114 (344)
-+|..+|...| +.|..|+..|. .. ...++|..|..+|.+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34777788887 47999999983 22 257899999988865
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.43 E-value=56 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 70 FSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.|+.|- .++.++ ..|-.-.+||..| |-+...|+.+....++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344444 445555 5688899999999 8899999887765543
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.17 E-value=4.9 Score=32.68 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CCCccccccccccccccccccccccccCC
Q 047101 24 KLLDYIKKHGH-------GSWRSLPEKADLQRCGKSCRLRWTNYLRP 63 (344)
Q Consensus 24 kL~~lV~k~G~-------~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P 63 (344)
+|..+|.+.|- +.|..|+..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56667776652 36999999998654 77788888888765
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=35.08 E-value=45 Score=27.39 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=48.8
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC-----
Q 047101 14 RGPWTPEED--QKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLG----- 86 (344)
Q Consensus 14 Kg~WT~EED--ekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G----- 86 (344)
+.+|.+.+. +.|.++.++.|. ....++.. + +|.-. =-+|..+|.+.|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 567988775 557777788886 55555432 2 12111 124677788887
Q ss_pred ---CChhHHhhhC--CCC---CHHHHHHHHHHHHHH
Q 047101 87 ---NRWSAIAAHL--PKR---TDNEIKNYWNTHIKK 114 (344)
Q Consensus 87 ---~kWs~IA~~L--pgR---T~~qcKnRW~~~Lkk 114 (344)
+.|..||..| |.- ....+|..|..+|-+
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4799999998 321 256889999888854
No 118
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=33.46 E-value=48 Score=27.85 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CChhHHhhhCC--CC---CHHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLP--KR---TDNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~Lp--gR---T~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|..|+..|. .. ...++|..|..+|.+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4677777777 47999999983 22 257899999988865
No 119
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.53 E-value=72 Score=24.16 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101 69 KFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118 (344)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (344)
..|+.|-+. +.++ ..|-.-.+||..| |-+...|+.+....+ ++++.
T Consensus 27 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~-~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTL-LGLL-SEGLTNKQIADRM-FLAEKTVKNYVSRLL-AKLGM 72 (95)
T ss_dssp CCCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHH-HHHTC
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH-HHHcC
Confidence 466666554 4455 7788899999999 889999998776554 44544
No 120
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.29 E-value=1.7e+02 Score=23.67 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 047101 15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY------LRPDIK----RGKFSLHEEQTIIQLHAL 84 (344)
Q Consensus 15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~------L~P~ik----rg~WT~EED~~Ll~lv~~ 84 (344)
...|.++-..++.++. .|. ....||..++. +...++ ||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999888888884 453 67889998883 333332 34332 222221 234788888888888876
Q ss_pred hC-CChhHHhhhC
Q 047101 85 LG-NRWSAIAAHL 96 (344)
Q Consensus 85 ~G-~kWs~IA~~L 96 (344)
.. -.-..|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 43 2234555544
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.68 E-value=64 Score=26.51 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.8
Q ss_pred hCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 85 ~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
.|-...+||..| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 89999999988766543
No 122
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.17 E-value=41 Score=29.48 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCCCCCCCCHHHHHHHH
Q 047101 63 PDIKRGKFSLHEEQTII 79 (344)
Q Consensus 63 P~ikrg~WT~EED~~Ll 79 (344)
|...+|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 66788999999999876
No 123
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.42 E-value=29 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHHHHhC--------CChhHHhhhCCC-----CCHHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLG--------NRWSAIAAHLPK-----RTDNEIKNYWNTHIKK 114 (344)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~Lpg-----RT~~qcKnRW~~~Lkk 114 (344)
+|..+|.+.| +.|..||..|.- -...++|..|..+|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777777 479999998832 1246789999888853
No 124
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.38 E-value=1e+02 Score=20.63 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 75 D~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
+..++.+ -..|-.-.+||..| |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4456666 46688899999999 8899999987766553
No 125
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.24 E-value=1.2e+02 Score=24.29 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=47.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 047101 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY------LRPDIK----RGKFSLHEEQTIIQLHA 83 (344)
Q Consensus 14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~------L~P~ik----rg~WT~EED~~Ll~lv~ 83 (344)
....|.|+-..++.++. .|. .-..||..++. +...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35789999888888884 454 67889998883 33333 233321 333222 23478888888888887
Q ss_pred HhC-CChhHHhhhC
Q 047101 84 LLG-NRWSAIAAHL 96 (344)
Q Consensus 84 ~~G-~kWs~IA~~L 96 (344)
+.+ -.-..|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 643 2233455444
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.20 E-value=99 Score=23.37 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
....|+.|-+.|.- +. .|..-.+||..| |-+...|+.+....++
T Consensus 27 ~~~Lt~rE~~Vl~l-~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQE-VE-KGFTNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHH-HH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34578877765554 44 788999999999 8899999988766554
No 127
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.34 E-value=73 Score=23.41 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 69 KFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
..|+.|-+. +.++ ..|-.-.+||+.| |-+...|+.+....++
T Consensus 21 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDI-LKLI-AQGLPNKMIARRL-DITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHH-HHHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 466666554 4444 5788899999999 8899999887765543
No 128
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=28.27 E-value=44 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=24.3
Q ss_pred HhCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK 114 (344)
Q Consensus 84 ~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (344)
..|-...+||+.| |-+...|+.+....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3477899999999 88999999988776643
No 129
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.04 E-value=67 Score=23.81 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH----hCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 74 EEQTIIQLHAL----LGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 74 ED~~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.+..++.+.-. .|-.+..||..| |-+...|+.+-...++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 44455555544 467899999999 8999999987766553
No 130
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=27.81 E-value=82 Score=24.88 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHH
Q 047101 71 SLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (344)
Q Consensus 71 T~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (344)
+..-+..|..+....|..|..+|++| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667778888899999999999999 777766644
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=26.71 E-value=87 Score=21.69 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 69 KFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
..|+.|-+.|. ++ ..|..-.+||+.| |-+...|+.+....+
T Consensus 11 ~L~~~e~~il~-~~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFE-LL-VQDKTTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HH-HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 46666665554 44 5678899999999 889999988776544
No 132
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.81 E-value=78 Score=23.53 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101 70 FSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI 112 (344)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L 112 (344)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 555555544 454 6788899999999 889999998776554
No 133
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.38 E-value=1.1e+02 Score=24.07 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 74 ED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.+..++.++-..|-....||..| |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44556666666788999999999 8899999888765543
No 134
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.86 E-value=99 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 77 TIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 77 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.++.++-..|-...+||+.| |-+...|+.+....++
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 33444444577899999999 8899999888765553
No 135
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.77 E-value=20 Score=30.26 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=33.3
Q ss_pred HHHHHHHHhCC-------CCCcccccccccccc----ccccccccccccCC--CCCCCCCCHHHHH
Q 047101 24 KLLDYIKKHGH-------GSWRSLPEKADLQRC----GKSCRLRWTNYLRP--DIKRGKFSLHEEQ 76 (344)
Q Consensus 24 kL~~lV~k~G~-------~~W~~IA~~~~~~Rt----~kQCr~Rw~n~L~P--~ikrg~WT~EED~ 76 (344)
+|..+|.+.|- +.|..|+..+++..+ +.+.+..|.++|.| ...+|.=.++|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45566666652 369999999986442 35677888888876 2334444444433
No 136
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.45 E-value=49 Score=27.48 Aligned_cols=44 Identities=5% Similarity=-0.033 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLA 117 (344)
Q Consensus 73 EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~ 117 (344)
+-|.+|+++.++-| -.+..||+.+ |-+...|+.|+..+.+..+-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45778888887766 5799999999 99999999999766655543
No 137
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.91 E-value=90 Score=24.53 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.5
Q ss_pred hCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113 (344)
Q Consensus 85 ~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (344)
.|-....||+.| |-+...|+.+....++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 467799999999 8899999888775543
No 138
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.86 E-value=1.6e+02 Score=22.18 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHH
Q 047101 72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (344)
Q Consensus 72 ~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (344)
.-|...|.++...+|++..+.|+.| |=+...+..
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477788899999999999999998 666655533
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.39 E-value=1e+02 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCChhHHhhhCCCCCHHHHH
Q 047101 77 TIIQLHALLGNRWSAIAAHLPKRTDNEIK 105 (344)
Q Consensus 77 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qcK 105 (344)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 46666788999999999999 66666553
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.34 E-value=84 Score=25.21 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCChhHHhhhCCCCCHHHHHH
Q 047101 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (344)
Q Consensus 75 D~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (344)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777788999999999999 666666543
No 141
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.28 E-value=1.3e+02 Score=24.21 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 047101 73 HEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLA 117 (344)
Q Consensus 73 EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~ 117 (344)
+-|..|+.+....| -.+..||+.+ |-+...|..|...+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44667777777766 5799999999 78999999998777655543
Done!