BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047103
(1095 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 5 GEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYAS 64
G DTR FIS LY L R+ I+TF D+++L G SP L + IE S+ +V++ S+ YA+
Sbjct: 17 GHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAA 76
Query: 65 SKWCLNELVKILDCKKANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMVQ 124
S WCL+ELV I+D +K V+P+FY V P VR QTG+ + F K RE PE V
Sbjct: 77 SSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVL 134
Query: 125 KWRDELTETSHLAGHESTKFRNDALLIDKIVEDV 158
KWR LT + L+G S +D+ L+DKI ++
Sbjct: 135 KWRQALTNFAQLSGDCSGD--DDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 5 GEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYAS 64
G DTR F LY +L R KI TF D+++L +G EI P LL AI+ SKI V I S GYA
Sbjct: 44 GPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103
Query: 65 SKWCLNELVKILDCKKAN-DQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMV 123
SKWCL EL +I+ ++ + +I++P+FY V P VRHQTG + AF K +F + +
Sbjct: 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTI 161
Query: 124 QKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLKNLEK 164
Q W+D L + L G K + DK+ D+ ++ K
Sbjct: 162 QNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 43/237 (18%)
Query: 599 NCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPRIS 657
+ GL +P Q F L L+L LR P +I ++ ++ ++ C L+E P
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE-- 168
Query: 658 GNVVELKLRHTPIEEVPSSID--CLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFC 715
P+ +S + L +L++L + ++SL +I L++L+SL +
Sbjct: 169 -----------PLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKI--- 213
Query: 716 EQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGN---LKALEFLSAAGIIK 772
S + L +I +L L EL L GCT L + P G LK L + ++
Sbjct: 214 -----RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 773 IPRDIGCLSSLVELDLSRN-NFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHL 828
+P DI L+ L +LDL N LPS I+ L +CI+L +PPHL
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-------NCIIL------VPPHL 312
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 549 ELRYLHWHQYPLKNEDKAPKLKYIDLNH----SSNLTRIPEPSET-PNLDRMNLWNCTGL 603
ELR + Q+P D+A +L + L H ++ L +P+ + L+ + L L
Sbjct: 87 ELRSVPLPQFP----DQAFRLSH--LQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPL 139
Query: 604 ALIPSYIQNFNNLGNLSLEGCESLRCFP------------QNIHFVSSIKINCSECVNLS 651
+P+ I + N L LS+ C L P Q + + S+++ + +L
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 652 EFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLH 711
N+ LK+R++P+ + +I LP LE L++ C +L++ L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 712 LAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKA 761
L K+ SN+ LP I L L +L L GC L LP + L A
Sbjct: 260 L-------KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 64/229 (27%), Positives = 91/229 (39%), Gaps = 48/229 (20%)
Query: 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGK 720
V L+LR P+ + P L L+ + + L L + L +L LA
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLA------- 135
Query: 721 EASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLG------------NLKALEFLSAA 768
+ ++ LP+SI +L LREL + C +L LPE L NL++L L
Sbjct: 136 -RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR-LEWT 193
Query: 769 GIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQ---------- 818
GI +P I L +L L + + +L I HL +L+ L L C L+
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 819 ----------SSLPELP------PHLVMLDARNCKRLQSLPELPSCLEA 851
S+L LP L LD R C L LP L + L A
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 662 ELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICK-LKSLRSLHLAFCEQLG 719
EL LR+ PIE +PS + + +P L L++ L+ +S + L +LR L+L C
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC---- 166
Query: 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--FLSAAGIIKIPRD- 776
N+K++P+ + L L EL+L G P S L +L +L A + I R+
Sbjct: 167 ----NLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNA 221
Query: 777 IGCLSSLVELDLSRNNFESLPSGI-SHLSRLKWLHL 811
L SL EL+LS NN SLP + + L RL+ +HL
Sbjct: 222 FDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 488 TDKIKGI----FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGL 543
TD K + L LS + GAF +P+L L+ + + T +P Q
Sbjct: 52 TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT--------QAF 103
Query: 544 DYLPKELRYLHWHQYPLKNE-----DKAPKLKYIDLNHSSNLTRIPEPS--ETPNLDRMN 596
+YL K LR L P+++ ++ P L+ +DL L I E + NL +N
Sbjct: 104 EYLSK-LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 597 LWNC 600
L C
Sbjct: 163 LGMC 166
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 662 ELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICK-LKSLRSLHLAFCEQLG 719
EL LR+ PIE +PS + + +P L L++ L+ +S + L +LR L+L C
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC---- 166
Query: 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--FLSAAGIIKIPRD- 776
N+K++P+ + L L EL+L G P S L +L +L A + I R+
Sbjct: 167 ----NLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNA 221
Query: 777 IGCLSSLVELDLSRNNFESLPSGI-SHLSRLKWLHL 811
L SL EL+LS NN SLP + + L RL+ +HL
Sbjct: 222 FDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 488 TDKIKGI----FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGL 543
TD K + L LS + GAF +P+L L+ + + T +P Q
Sbjct: 52 TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT--------QAF 103
Query: 544 DYLPKELRYLHWHQYPLKNE-----DKAPKLKYIDLNHSSNLTRIPEPS--ETPNLDRMN 596
+YL K LR L P+++ ++ P L+ +DL L I E + NL +N
Sbjct: 104 EYLSK-LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 597 LWNC 600
L C
Sbjct: 163 LGMC 166
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 15/156 (9%)
Query: 662 ELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICK-LKSLRSLHLAFCEQLG 719
EL LR+ PIE +PS + + +P L L++ L+ +S + L +L+ L+L C
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC---- 206
Query: 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--FLSAAGIIKIPRD- 776
NIK++P+ + L GL EL++ G P S L +L+ ++ + + I R+
Sbjct: 207 ----NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261
Query: 777 IGCLSSLVELDLSRNNFESLPSGI-SHLSRLKWLHL 811
L+SLVEL+L+ NN SLP + + L L LHL
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 662 ELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICK-LKSLRSLHLAFCEQLG 719
EL LR+ PIE +PS + + +P L L++ L +S + L +LR L+LA C
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---- 195
Query: 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--FLSAAGIIKIPRD- 776
N++E+P+ + L L EL L G P S L L+ ++ + I I R+
Sbjct: 196 ----NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 777 IGCLSSLVELDLSRNNFESLP----SGISHLSRLKWLH 810
L SLVE++L+ NN LP + + HL R+ H
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 740 ELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG 799
ELQL L SLP++L + ++ +I +P L L D + LP+
Sbjct: 63 ELQL-NRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS 121
Query: 800 ISHL----SRLKWLHLFDCIMLQ--------SSLPELPPHLVMLDARNCKRLQSLPELPS 847
+ HL ++L L ++ + LPELP L +L RN +L LPELP
Sbjct: 122 LKHLDVDNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPE 180
Query: 848 CLEALDAS--VVETL------SNHTSESNMF 870
LEALD S ++E+L ++H+ E+ +F
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIF 211
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 200 VGIWGMGGIGKITLATAIFNQFS---GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTIL 256
V I+GM G GK LA S G F G + + +G L LQ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-LMKLQNLCMRLDQ 208
Query: 257 SEKLEVAGPNIPQFTKGRFRCM------KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRII 310
E P + K R R + + L++LD+V L+ F +I+
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQIL 261
Query: 311 ITTRDKRVLEK-FGVKKIYRV-NGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK 368
+TTRDK V + G K + V +GL + LE + N +DL + +++ K
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 318
Query: 369 GNPLALKVMGSSL 381
G+PL + ++G+ L
Sbjct: 319 GSPLVVSLIGALL 331
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 200 VGIWGMGGIGKITLATAIFNQFS---GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTIL 256
V I+GM G GK LA S G F G + + +G L LQ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-LMKLQNLCMRLDQ 215
Query: 257 SEKLEVAGPNIPQFTKGRFRCM------KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRII 310
E P + K R R + + L++LD+V L+ F +I+
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQIL 268
Query: 311 ITTRDKRVLEK-FGVKKIYRV-NGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK 368
+TT DK V + G K + V +GL + LE + N +DL + +++ K
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 325
Query: 369 GNPLALKVMGSSL 381
G+PL + ++G+ L
Sbjct: 326 GSPLVVSLIGALL 338
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 722 ASNIKELPSSI-ENLEGLRELQLMGCTKLGSLPESL-GNLKALEFLSAA--GIIKIPRDI 777
+ ++ LP+ + + L L+EL L+ +L SLP+ + L L +L+ A + +P+ +
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 778 -GCLSSLVELDLSRNNFESLPSGI-SHLSRLKWLHLF 812
L++L ELDLS N +SLP G+ L++LK L L+
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 169 TDSYNGLVGLNSRIEQIK-----PLLCMELSDTVQI-----VGIWGMGGIGKITLATAIF 218
T+SY+ + GL S+I++IK PL EL + + I V ++G G GK LA A+
Sbjct: 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
Query: 219 NQFSGGF 225
NQ S F
Sbjct: 238 NQTSATF 244
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 764 FLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLP 822
+L+ + ++P +I LS+L LDLS N SLP+ + +LK+ + FD ++ ++LP
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV--TTLP 309
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 686 LEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMG 745
L++SN + ++S NI K L L+L +++ ELP+ I+NL LR L L
Sbjct: 229 LDLSNL-QIFNISANIFKYDFLTRLYL--------NGNSLTELPAEIKNLSNLRVLDL-S 278
Query: 746 CTKLGSLPESLGN---LKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794
+L SLP LG+ LK F + +P + G L +L L + N E
Sbjct: 279 HNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 131/311 (42%), Gaps = 71/311 (22%)
Query: 574 LNHSSNLTRIPEPSET--PNLDRMNLW----------NCTGLALIPSYIQN--------- 612
L HSSNLT +P +E + N W N + S +++
Sbjct: 17 LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76
Query: 613 -FNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIE 671
NNLG L P+ + S+ + C +L+E P + ++ L + + ++
Sbjct: 77 ELNNLG---------LSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLK 124
Query: 672 EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS 731
+ D P LE L +SN + KL L+ + +F + + + +++K+LP
Sbjct: 125 AL---SDLPPLLEYLGVSN--------NQLEKLPELQ--NSSFLKIIDVDNNSLKKLPDL 171
Query: 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRN 791
+LE + G +L LPE L+ L FL+A I D L L +L LS
Sbjct: 172 PPSLEFIA----AGNNQLEELPE----LQNLPFLTA-----IYADNNSLKKLPDLPLS-- 216
Query: 792 NFESLPSG---ISHLSRLKWLHLFDCIM----LQSSLPELPPHLVMLDARNCKRLQSLPE 844
ES+ +G + L L+ L I L +LP+LPP L L+ R+ L LPE
Sbjct: 217 -LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD-NYLTDLPE 274
Query: 845 LPSCLEALDAS 855
LP L LD S
Sbjct: 275 LPQSLTFLDVS 285
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 44/274 (16%)
Query: 599 NCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISG 658
N GL+ +P + +L + C SL P+ + S+ ++ + LS+ P +
Sbjct: 79 NNLGLSSLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL-- 132
Query: 659 NVVELKLRHTPIEEVP---------------SSIDCLPDLETLEMSNCYSLKSLSTNICK 703
+ L + + +E++P +S+ LPDL SL+ ++ +
Sbjct: 133 -LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP-------SLEFIAAGNNQ 184
Query: 704 LKSLRSLH-LAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKAL 762
L+ L L L F + + +++K+LP +LE + + G L LPE L NL L
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI----VAGNNILEELPE-LQNLPFL 239
Query: 763 EFLSA-AGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSL 821
+ A ++K D+ SL L++ N LP L+ +L + + I S L
Sbjct: 240 TTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPELPQSLT---FLDVSENIF--SGL 292
Query: 822 PELPPHLVMLDARNCKRLQSLPELPSCLEALDAS 855
ELPP+L L+A + ++SL +LP LE L+ S
Sbjct: 293 SELPPNLYYLNA-SSNEIRSLCDLPPSLEELNVS 325
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ S +L +
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISAL----SGLTSLQQLSF 158
Query: 656 ISGNVVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSLHL 712
S V +LK T +E + S + + D+ L +++N SL + + I + L L
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--IL 216
Query: 713 AFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIK 772
++L + +K++ ++ +L L +L L ++ +L G K E A I
Sbjct: 217 TNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 773 IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
+ L++L L+L+ N E + S IS+L L +L L+
Sbjct: 275 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 313
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 22/193 (11%)
Query: 200 VGIWGMGGIGKITLATAIFNQFS---GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTIL 256
V I GM G GK LA S G F G V + +G L LQ
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL-LMKLQNLCTRLDQ 208
Query: 257 SEKLEVAGPNIPQFTKGRFRCM------KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRII 310
E P + K R R + + L++LD+V L+ F +I+
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQIL 261
Query: 311 ITTRDKRVLEK-FGVKKIYRV-NGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK 368
+TTRDK V + G K + V + L + LE + N DL + +++ K
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECK 318
Query: 369 GNPLALKVMGSSL 381
G+PL + ++G+ L
Sbjct: 319 GSPLVVSLIGALL 331
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 22/193 (11%)
Query: 200 VGIWGMGGIGKITLATAIFNQFS---GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTIL 256
V I GM G GK LA S G F G V + +G L LQ
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL-LMKLQNLCTRLDQ 214
Query: 257 SEKLEVAGPNIPQFTKGRFRCM------KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRII 310
E P + K R R + + L++LD+V L+ F +I+
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQIL 267
Query: 311 ITTRDKRVLEK-FGVKKIYRV-NGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK 368
+TTRDK V + G K + V + L + LE + N DL + +++ K
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECK 324
Query: 369 GNPLALKVMGSSL 381
G+PL + ++G+ L
Sbjct: 325 GSPLVVSLIGALL 337
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ S +L +
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISAL----SGLTSLQQLSF 158
Query: 656 ISGNVVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSLHL 712
S V +LK T +E + S + + D+ L +++N SL + + I + L L
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--IL 216
Query: 713 AFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIK 772
++L + +K++ ++ +L L +L L ++ +L G K E A I
Sbjct: 217 TNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 773 IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
+ L++L L+L+ N E + S IS+L L +L L+
Sbjct: 275 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 313
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 722 ASNIKELPSSI-ENLEGLRELQLMGCTKLGSLPE----SLGNLKALEFLSAAGIIKIPRD 776
+ ++ LP+ + + L L+EL L+ +L SLP+ L NL L +L + +P+
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYL-YLYHNQLQSLPKG 151
Query: 777 I-GCLSSLVELDLSRNNFESLPSGI-SHLSRLKWLHLFD 813
+ L++L LDL N +SLP G+ L++LK L L D
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ S +L +
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISAL----SGLTSLQQLNF 158
Query: 656 ISGNVVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSLHL 712
S V +LK T +E + S + + D+ L +++N SL + + I + L L
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--IL 216
Query: 713 AFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIK 772
++L + +K++ ++ +L L +L L ++ +L G K E A I
Sbjct: 217 TNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 773 IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
+ L++L L+L+ N E + S IS+L L +L L+
Sbjct: 275 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 313
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 678 DCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737
DCLP ++ +L N+ L +L L E G + +++ LP G
Sbjct: 57 DCLP-------AHITTLVIPDNNLTSLPALPP-ELRTLEVSGNQLTSLPVLPP------G 102
Query: 738 LRELQLMG--CTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFES 795
L EL + T L +LP L L ++ + +P L EL +S N S
Sbjct: 103 LLELSIFSNPLTHLPALPSGLCKL----WIFGNQLTSLPV---LPPGLQELSVSDNQLAS 155
Query: 796 LPSGISHLSRLKWLH---LFDCIMLQS-------------SLPELPPHLVMLDARNCKRL 839
LP+ S L +L W + L ML S SLP LP L L A N RL
Sbjct: 156 LPALPSELCKL-WAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN-NRL 213
Query: 840 QSLPELPSCLEALDAS 855
SLP LPS L+ L S
Sbjct: 214 TSLPALPSGLKELIVS 229
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 781 SSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCKRLQ 840
S L EL +S N SLP+ S L +L W + +SLP LP L L + RL
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKL-WAYNNRL----TSLPALPSGLKELIV-SGNRLT 234
Query: 841 SLPELPSCLEALDAS 855
SLP LPS L+ L S
Sbjct: 235 SLPVLPSELKELMVS 249
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 47/198 (23%)
Query: 649 NLSEFPRISGNVVELKLRHTPIEEVP----------------SSIDCLPD-LETLEMSN- 690
L+ P + ++EL + P+ +P +S+ LP L+ L +S+
Sbjct: 92 QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151
Query: 691 -CYSLKSLSTNICKL----KSLRSLHL--AFCEQLG---KEASNIKELPSSIENL----- 735
SL +L + +CKL L SL + + ++L + +++ LPS + L
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 211
Query: 736 ---------EGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVEL 786
GL+EL + G +L SLP LK L +S + +P S L+ L
Sbjct: 212 RLTSLPALPSGLKELIVSG-NRLTSLPVLPSELKEL-MVSGNRLTSLPM---LPSGLLSL 266
Query: 787 DLSRNNFESLPSGISHLS 804
+ RN LP + HLS
Sbjct: 267 SVYRNQLTRLPESLIHLS 284
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 691 CYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENL------------EGL 738
C +LK L T I + L++ + K S+++ L S+ +L E +
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 739 RELQLMGCTKLGSLPESLG-NLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLP 797
L L GS+ L +K L+ L I+ IP+D+ L +L EL+++ N +S+P
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLD-LHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 798 SGI-SHLSRLKWLHLFD 813
G+ L+ L+++ L D
Sbjct: 490 DGVFDRLTSLQYIWLHD 506
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ L+ +
Sbjct: 109 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISALS-------GLTSLQQ 159
Query: 656 IS-GN-VVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSL 710
+S GN V +LK T +E + S + + D+ L +++N SL + + I + L
Sbjct: 160 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-- 217
Query: 711 HLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGI 770
L ++L + +K++ ++ +L L +L L ++ +L G K E A
Sbjct: 218 ILTNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQ 275
Query: 771 IKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
I + L++L L+L+ N E + S IS+L L +L L+
Sbjct: 276 ISNISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 316
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ L+ +
Sbjct: 110 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISALS-------GLTSLQQ 160
Query: 656 IS-GN-VVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSL 710
+S GN V +LK T +E + S + + D+ L +++N SL + + I + L
Sbjct: 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-- 218
Query: 711 HLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGI 770
L ++L + +K++ ++ +L L +L L ++ +L G K E A
Sbjct: 219 ILTNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQ 276
Query: 771 IKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
I + L++L L+L+ N E + S IS+L L +L L+
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 317
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 35/133 (26%)
Query: 707 LRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--- 763
L SLHL+F G +PSS+ +L LR+L+L G +P+ L +K LE
Sbjct: 420 LVSLHLSFNYLSGT-------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 764 --FLSAAGII----------------------KIPRDIGCLSSLVELDLSRNNFE-SLPS 798
F G I +IP+ IG L +L L LS N+F ++P+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 799 GISHLSRLKWLHL 811
+ L WL L
Sbjct: 533 ELGDCRSLIWLDL 545
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 750 GSLPESLGNLKALEFLSAAGII---KIPRDIGCLSSLVELDLSRNNFE 794
GS+P+ +G+L+ L L + +IP+ + L+ L E+DLS NN
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 35/133 (26%)
Query: 707 LRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE--- 763
L SLHL+F G +PSS+ +L LR+L+L G +P+ L +K LE
Sbjct: 417 LVSLHLSFNYLSGT-------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 764 --FLSAAGII----------------------KIPRDIGCLSSLVELDLSRNNFE-SLPS 798
F G I +IP+ IG L +L L LS N+F ++P+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 799 GISHLSRLKWLHL 811
+ L WL L
Sbjct: 530 ELGDCRSLIWLDL 542
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 750 GSLPESLGNLKALEFLSAAGII---KIPRDIGCLSSLVELDLSRNNFE 794
GS+P+ +G+L+ L L + +IP+ + L+ L E+DLS NN
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 29/112 (25%)
Query: 729 PSSIENLEGLRELQLMGCTKLGSLP----ESLGNLKALE--------------------- 763
P ++L L+EL L G +LG+LP +SL L L+
Sbjct: 57 PGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 764 --FLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKWLHLF 812
F+ + ++PR I L+ L L L +N +S+P G LS L +LF
Sbjct: 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 15/220 (6%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ S +L +
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISAL----SGLTSLQQL-N 157
Query: 656 ISGNVVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSLHL 712
V +LK T +E + S + + D+ L +++N SL + + I + L L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--IL 215
Query: 713 AFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIK 772
++L + +K++ ++ +L L +L L ++ +L G K E A I
Sbjct: 216 TNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQIS 273
Query: 773 IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
+ L++L L+L+ N E + S IS+L L +L L+
Sbjct: 274 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 312
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 780 LSSLVELDLSRNNFESLPSGI-SHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCKR 838
LS L L L+ N SLP G+ SHL+ L+ L L + S +LP +L +LD +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 839 LQSLPELPSCLEALDAS 855
L P++ L LD +
Sbjct: 539 LAPNPDVFVSLSVLDIT 555
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 15/220 (6%)
Query: 596 NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPR 655
NL N TGL L + I + + L NL+ L I +S++ S +L +
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISAL----SGLTSLQQL-N 157
Query: 656 ISGNVVELK--LRHTPIEEVPSSIDCLPDLETL-EMSNCYSLKSLSTNICKLKSLRSLHL 712
V +LK T +E + S + + D+ L +++N SL + + I + L L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--IL 215
Query: 713 AFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIK 772
++L + +K++ ++ +L L +L L ++ +L G K E A I
Sbjct: 216 TNLDELSLNGNQLKDI-GTLASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQIS 273
Query: 773 IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812
+ L++L L+L+ N E + S IS+L L +L L+
Sbjct: 274 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLY 312
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 36/180 (20%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 6 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L SS++ L L
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-----------SSLQKLVALE-- 111
Query: 742 QLMGCTKLGSLPE-SLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
T L SL +G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 112 -----TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 5 VEVVPNITYQCEE-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 63
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 119
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 120 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 4 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 118
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 119 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1I0E|A Chain A, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|B Chain B, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|C Chain C, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|D Chain D, Crystal Structure Of Creatine Kinase From Human Muscle
Length = 381
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 889 PGSEIPELFS-NRSLGSSITIQLPHRCGNKFF-IGFAINVVIEIDSDHDNTSCVFRVGCK 946
P E P+L N + +T++L + +K GF ++ VI+ D+ + VGC
Sbjct: 16 PEEEYPDLSKHNNHMAKVLTLELYKKLRDKETPSGFTVDDVIQTGVDNPGHPFIMTVGCV 75
Query: 947 FGSNHQY--FFELFD 959
G Y F ELFD
Sbjct: 76 AGDEESYEVFKELFD 90
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 28 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 86
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 142
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 143 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 14/82 (17%)
Query: 779 CLSSLVELDLSRNNFESLPSGISHLSRLKWLHL----FD--CIMLQSSLPELPPHLVMLD 832
C S L ELDL+ + LPSG+ LS LK L L F+ C + S+ P L HL +
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-THLSI-- 332
Query: 833 ARNCKRLQSLPELPS-CLEALD 853
N KRL EL + CLE L+
Sbjct: 333 KGNTKRL----ELGTGCLENLE 350
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 5 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 63
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 119
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 120 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 6 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 120
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 121 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 765 LSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGI-SHLSRLK--WLHL--FDC 814
L + I IP+ + L +L EL+++ N +S+P GI L+ L+ WLH +DC
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 4 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 118
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 119 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 39/193 (20%)
Query: 634 IHFVSSIKINCSECVNLSEFP-RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNC 691
+ V +I C E +N + P + + L L P+ + S S P+L+ L++S C
Sbjct: 4 VEVVPNITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 692 ----------YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741
SL LST I ++SL L L S++++L + NL L
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENF 118
Query: 742 QLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESLP 797
+G+LK L+ L+ A + K+P L++L LDLS N +S+
Sbjct: 119 -------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI- 164
Query: 798 SGISHLSRLKWLH 810
+ + L+ LH
Sbjct: 165 ----YCTDLRVLH 173
>pdb|2B4L|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Glycine Betaine
pdb|2B4M|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|2B4M|B Chain B, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|3CHG|D Chain D, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|A Chain A, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|B Chain B, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|C Chain C, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
Length = 268
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 452 EMGREIVRKESNEEPGKRSRLWDHRDVSRVLKYNKGTDKIKGIFLDLS 499
EMG +++ E E+P K + + ++ ++ ++ KG K+KG ++L+
Sbjct: 123 EMGEIMIKVEEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLA 170
>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium
Smegmatis
Length = 256
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 959 DNAGFNSNHVMLGLYPCWNIGIGLPDGDNGGHQAAAALSFDFL 1001
+NA F H +GL P W + + LP G +L+ D+L
Sbjct: 121 ENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYL 163
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 765 LSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGI-SHLSRLK--WLHL--FDC 814
++ + ++ + + +S L+EL+ SRN +S+P GI L+ L+ WLH +DC
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315
>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
Length = 253
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 959 DNAGFNSNHVMLGLYPCWNIGIGLPDGDNGGHQAAAALSFDFL 1001
+NA F H +GL P W + + LP G +L+ D+L
Sbjct: 120 ENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYL 162
>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
Avium
Length = 270
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 959 DNAGFNSNHVMLGLYPCWNIGIGLPDGDNGGHQAAAALSFDFL 1001
+NA F H +GL P W + + LP G +L+ D+L
Sbjct: 137 ENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYL 179
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 37/83 (44%)
Query: 12 FISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNE 71
F+ L L + + D+ L GD + ++ + S+ +++ S + +W E
Sbjct: 35 FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94
Query: 72 LVKILDCKKANDQIVIPVFYNVS 94
L + + + ++P+++ VS
Sbjct: 95 LDGLFQLESSGRSRILPIWHKVS 117
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 738 LRELQLMGC--TKL---GSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNN 792
L +L L C TKL G+LP LG L LS + +P L +L LD+S N
Sbjct: 57 LTQLNLDRCELTKLQVDGTLP-VLGTLD----LSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 793 FESLPSG-ISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK------RLQSLPE- 844
SLP G + L L+ L+L + L LPP L+ + K +L LP
Sbjct: 112 LTSLPLGALRGLGELQELYL-----KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 845 LPSCLEALDASVVETLSNHTSESNMF---LSPFIFEFDKP 881
L + LE LD +++ S +T F L PF F P
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 25 IKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQ 84
++ F D G I L A+ S V++ + G+ WC ++++ L +
Sbjct: 39 LRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG 98
Query: 85 IVIPVFYNVS 94
IP+ +S
Sbjct: 99 CTIPLLLGLS 108
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 738 LRELQLMGC--TKL---GSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNN 792
L +L L C TKL G+LP LG L LS + +P L +L LD+S N
Sbjct: 57 LTQLNLDRCELTKLQVDGTLP-VLGTLD----LSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 793 FESLPSG-ISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK------RLQSLPE- 844
SLP G + L L+ L+L + L LPP L+ + K +L LP
Sbjct: 112 LTSLPLGALRGLGELQELYL-----KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 845 LPSCLEALDASVVETLSNHTSESNMF---LSPFIFEFDKP 881
L + LE LD +++ S +T F L PF F P
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 30/157 (19%)
Query: 738 LRELQLMGCTK-LGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESL 796
L +LQ+ G LG+L S L++L L L +L LD+S N SL
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT-----------LPALTVLDVSFNRLTSL 115
Query: 797 PSG-ISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCKRL----QSLPELPS---- 847
P G + L L+ L+L + L LPP L+ + ++L +L ELP+
Sbjct: 116 PLGALRGLGELQELYL-----KGNELKTLPPGLLTPTPK-LEKLSLANNNLTELPAGLLN 169
Query: 848 CLEALDASVVETLSNHTSESNMF---LSPFIFEFDKP 881
LE LD +++ S +T F L PF F P
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 738 LRELQLMGC--TKL---GSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNN 792
L +L L C TKL G+LP LG L LS + +P L +L LD+S N
Sbjct: 57 LTQLNLDRCELTKLQVDGTLP-VLGTLD----LSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 793 FESLPSG-ISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCKRL----QSLPELPS 847
SLP G + L L+ L+L + L LPP L+ + ++L L ELP+
Sbjct: 112 LTSLPLGALRGLGELQELYL-----KGNELKTLPPGLLTPTPK-LEKLSLANNDLTELPA 165
Query: 848 ----CLEALDASVVETLSNHTSESNMF---LSPFIFEFDKP 881
LE LD +++ S +T F L PF F P
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 25 IKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQ 84
++ F D G I L A+ S V++ + G+ WC ++++ L +
Sbjct: 39 LRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG 98
Query: 85 IVIPVFYNVS 94
IP+ +S
Sbjct: 99 CTIPLLSGLS 108
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 25 IKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQ 84
++ F D G I L A+ S V++ + G+ WC ++++ L +
Sbjct: 39 LRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG 98
Query: 85 IVIPVFYNVS 94
IP+ +S
Sbjct: 99 CTIPLLSGLS 108
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 25 IKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQ 84
++ F D G I L A+ S V++ + G+ WC ++++ L +
Sbjct: 38 LRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG 97
Query: 85 IVIPVFYNVS 94
IP+ +S
Sbjct: 98 CTIPLLSGLS 107
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 654 PRISGNVVELKLRHTPIEEVPSS---IDC----LPDLETLEMSNCYSLKSLSTNICKLKS 706
P I+ ++ KL P +++PSS ID L L++ SN L+ L + C++++
Sbjct: 7 PNITYQCMDQKLSKVP-DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 65
Query: 707 L--RSLH-LAFCEQLGKEASNIKEL-PSSIENLEGLRELQLMGCTKLGSLPE-SLGNLKA 761
+ ++ H L L + I+ P S L L L + TKL SL +G L
Sbjct: 66 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLIT 124
Query: 762 LEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
L+ L+ A K+P L++LV +DLS N +++
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 654 PRISGNVVELKLRHTPIEEVPSS---IDC----LPDLETLEMSNCYSLKSLSTNICKLKS 706
P I+ ++ KL P +++PSS ID L L++ SN L+ L + C++++
Sbjct: 12 PNITYQCMDQKLSKVP-DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 707 L--RSLH-LAFCEQLGKEASNIKEL-PSSIENLEGLRELQLMGCTKLGSLPE-SLGNLKA 761
+ ++ H L L + I+ P S L L L + TKL SL +G L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLIT 129
Query: 762 LEFLSAAGII----KIPRDIGCLSSLVELDLSRNNFESL 796
L+ L+ A K+P L++LV +DLS N +++
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 764 FLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGI-SHLSRLK--WLHL--FDC 814
++S ++ +P D L L+ L +SRN +S+P GI L+ L+ WLH +DC
Sbjct: 457 YISRNKLMTLP-DASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,381,535
Number of Sequences: 62578
Number of extensions: 1466734
Number of successful extensions: 3406
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3289
Number of HSP's gapped (non-prelim): 144
length of query: 1095
length of database: 14,973,337
effective HSP length: 109
effective length of query: 986
effective length of database: 8,152,335
effective search space: 8038202310
effective search space used: 8038202310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)