Query 047103
Match_columns 1095
No_of_seqs 1046 out of 5428
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7E-143 2E-147 1392.3 79.4 982 1-1027 17-1098(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.3E-56 2E-60 545.9 26.5 594 176-845 161-848 (889)
3 PLN03194 putative disease resi 100.0 1.2E-42 2.7E-47 341.5 13.4 144 1-162 31-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-34 5.5E-39 322.2 10.8 241 178-424 1-280 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.9E-27 4.1E-32 310.8 22.2 363 464-843 42-445 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.6E-30 292.6 20.2 338 495-843 144-516 (968)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 242.7 -2.8 287 542-844 73-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 4.6E-23 9.9E-28 229.3 5.3 324 494-837 81-427 (873)
9 KOG0444 Cytoskeletal regulator 99.8 1.5E-22 3.2E-27 225.8 -3.2 290 511-819 74-377 (1255)
10 PLN03210 Resistant to P. syrin 99.8 1.3E-19 2.9E-24 237.5 23.2 280 514-819 610-908 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.4E-22 3E-27 216.8 -7.4 216 510-747 86-308 (565)
12 KOG4194 Membrane glycoprotein 99.8 2.6E-21 5.7E-26 215.4 1.9 259 566-833 172-446 (873)
13 PF01582 TIR: TIR domain; Int 99.8 5.1E-21 1.1E-25 189.6 1.1 131 1-131 3-140 (141)
14 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.6E-24 194.5 -1.9 285 508-817 199-541 (565)
15 KOG0618 Serine/threonine phosp 99.7 2.7E-18 5.9E-23 201.7 -0.5 331 491-839 45-489 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 3.5E-16 7.7E-21 190.8 17.3 252 495-817 205-458 (788)
17 PRK15387 E3 ubiquitin-protein 99.7 1E-15 2.2E-20 186.8 16.4 230 496-794 227-458 (788)
18 smart00255 TIR Toll - interleu 99.6 5.4E-16 1.2E-20 153.8 9.0 132 1-135 6-139 (140)
19 PRK15370 E3 ubiquitin-protein 99.6 5E-15 1.1E-19 182.1 11.9 221 548-816 199-427 (754)
20 KOG0618 Serine/threonine phosp 99.5 2.3E-16 5E-21 185.7 -3.2 294 495-819 182-491 (1081)
21 PRK15370 E3 ubiquitin-protein 99.5 7.1E-14 1.5E-18 172.0 12.2 59 781-843 346-404 (754)
22 KOG0617 Ras suppressor protein 99.4 2.5E-15 5.4E-20 144.0 -4.4 171 658-842 33-206 (264)
23 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.6E-19 156.6 -2.3 123 494-624 70-198 (498)
24 KOG0617 Ras suppressor protein 99.4 5.7E-15 1.2E-19 141.6 -5.1 164 565-803 31-195 (264)
25 cd00116 LRR_RI Leucine-rich re 99.3 8.8E-14 1.9E-18 158.4 -2.1 252 566-837 22-318 (319)
26 cd00116 LRR_RI Leucine-rich re 99.3 3.5E-13 7.7E-18 153.4 -1.7 242 572-837 3-289 (319)
27 KOG4237 Extracellular matrix p 99.2 3.7E-13 8E-18 145.3 -3.4 231 586-816 87-358 (498)
28 PF13676 TIR_2: TIR domain; PD 99.2 8.3E-12 1.8E-16 116.4 4.2 89 1-98 3-91 (102)
29 PRK04841 transcriptional regul 99.1 1.5E-09 3.2E-14 141.8 19.9 271 168-461 9-335 (903)
30 KOG4658 Apoptotic ATPase [Sign 99.0 1.8E-10 4E-15 144.2 3.5 248 568-843 524-787 (889)
31 PF05729 NACHT: NACHT domain 98.9 6.3E-09 1.4E-13 106.1 12.3 141 198-345 1-162 (166)
32 PRK00411 cdc6 cell division co 98.9 2.5E-08 5.5E-13 117.1 17.2 232 170-407 27-308 (394)
33 PF01637 Arch_ATPase: Archaeal 98.9 8.2E-09 1.8E-13 111.6 10.7 194 175-375 1-232 (234)
34 TIGR03015 pepcterm_ATPase puta 98.8 4.3E-08 9.3E-13 108.8 15.8 179 196-381 42-242 (269)
35 TIGR02928 orc1/cdc6 family rep 98.8 1.2E-07 2.6E-12 110.2 19.0 233 170-407 12-300 (365)
36 TIGR00635 ruvB Holliday juncti 98.8 2.3E-08 5E-13 113.1 11.5 251 173-440 4-289 (305)
37 PRK00080 ruvB Holliday junctio 98.8 2.3E-08 5E-13 113.9 10.6 255 169-440 21-310 (328)
38 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.5E-14 123.7 -3.0 124 568-715 76-199 (722)
39 KOG3207 Beta-tubulin folding c 98.7 3.3E-09 7.2E-14 116.8 -0.2 212 565-818 119-340 (505)
40 COG4886 Leucine-rich repeat (L 98.7 2.9E-08 6.3E-13 116.6 7.7 150 659-819 141-292 (394)
41 COG2256 MGS1 ATPase related to 98.7 1.4E-07 3.1E-12 103.8 11.9 123 195-345 46-175 (436)
42 PRK06893 DNA replication initi 98.6 2.3E-07 5.1E-12 99.8 13.1 146 197-373 39-199 (229)
43 KOG0532 Leucine-rich repeat (L 98.6 3.8E-09 8.3E-14 119.5 -2.2 164 660-837 100-271 (722)
44 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 106.0 -0.1 197 586-818 210-413 (490)
45 COG4886 Leucine-rich repeat (L 98.5 1.9E-07 4.1E-12 109.8 8.3 178 564-754 113-295 (394)
46 PRK13342 recombination factor 98.5 9.9E-07 2.1E-11 103.7 14.1 175 170-375 9-194 (413)
47 COG2909 MalT ATP-dependent tra 98.5 9.5E-07 2E-11 105.8 13.2 274 168-461 14-341 (894)
48 KOG3207 Beta-tubulin folding c 98.5 4.6E-08 9.9E-13 108.0 1.2 134 564-717 169-313 (505)
49 KOG1909 Ran GTPase-activating 98.4 1.1E-08 2.4E-13 110.0 -3.7 136 677-815 153-309 (382)
50 PF14580 LRR_9: Leucine-rich r 98.4 2.2E-07 4.8E-12 94.3 4.4 38 780-817 87-126 (175)
51 PLN03150 hypothetical protein; 98.4 6.1E-07 1.3E-11 110.7 8.8 109 683-819 420-530 (623)
52 PRK15386 type III secretion pr 98.4 8.9E-07 1.9E-11 100.3 8.7 158 659-864 53-217 (426)
53 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.9E-06 1.3E-10 89.0 14.1 172 172-377 14-201 (226)
54 PF13173 AAA_14: AAA domain 98.3 2.8E-06 6.1E-11 82.6 10.3 119 198-338 3-127 (128)
55 TIGR01242 26Sp45 26S proteasom 98.3 2.5E-06 5.5E-11 98.7 11.4 174 170-370 119-327 (364)
56 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 108.8 8.6 93 659-758 419-512 (623)
57 PTZ00202 tuzin; Provisional 98.3 4.4E-06 9.6E-11 93.8 12.2 198 133-344 216-432 (550)
58 PF14580 LRR_9: Leucine-rich r 98.3 3.5E-07 7.6E-12 92.8 3.0 58 566-625 41-99 (175)
59 COG3899 Predicted ATPase [Gene 98.3 5.9E-06 1.3E-10 104.6 14.1 280 174-458 1-386 (849)
60 KOG1259 Nischarin, modulator o 98.3 2E-07 4.4E-12 97.7 0.2 123 703-837 282-410 (490)
61 PRK15386 type III secretion pr 98.2 5.4E-06 1.2E-10 94.1 11.5 160 636-839 50-213 (426)
62 PRK12402 replication factor C 98.2 1.6E-05 3.6E-10 91.2 14.3 195 169-373 11-222 (337)
63 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.9E-10 79.2 11.8 123 176-317 1-131 (151)
64 PTZ00112 origin recognition co 98.2 1E-05 2.2E-10 97.7 12.4 199 170-377 752-982 (1164)
65 PRK05564 DNA polymerase III su 98.2 2.7E-05 5.8E-10 88.2 14.9 176 172-374 3-187 (313)
66 PRK14961 DNA polymerase III su 98.2 3.7E-05 8E-10 88.8 16.0 190 170-373 13-216 (363)
67 PRK08727 hypothetical protein; 98.1 5E-05 1.1E-09 82.0 15.2 164 172-369 18-196 (233)
68 PLN03025 replication factor C 98.1 2.4E-05 5.2E-10 88.9 13.1 181 169-371 9-194 (319)
69 KOG1909 Ran GTPase-activating 98.1 1.7E-07 3.7E-12 101.1 -4.1 176 659-837 93-309 (382)
70 PRK14963 DNA polymerase III su 98.1 1.7E-05 3.6E-10 94.6 12.1 191 169-373 10-213 (504)
71 PF05496 RuvB_N: Holliday junc 98.1 2.6E-05 5.7E-10 81.0 11.6 173 168-372 19-216 (233)
72 PRK04195 replication factor C 98.1 2.7E-05 5.8E-10 93.5 13.5 179 168-372 9-197 (482)
73 PRK13341 recombination factor 98.1 3E-05 6.5E-10 95.9 13.9 170 169-370 24-210 (725)
74 PRK07003 DNA polymerase III su 98.1 6E-05 1.3E-09 91.1 15.7 194 169-376 12-220 (830)
75 PRK14949 DNA polymerase III su 98.1 7.1E-05 1.5E-09 92.2 16.4 181 170-372 13-215 (944)
76 PRK00440 rfc replication facto 98.1 6.6E-05 1.4E-09 85.5 15.5 183 169-373 13-199 (319)
77 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.4E-12 99.8 -6.7 155 587-747 207-374 (419)
78 PF13401 AAA_22: AAA domain; P 98.0 9.4E-06 2E-10 79.1 7.0 113 196-315 3-125 (131)
79 PF13191 AAA_16: AAA ATPase do 98.0 7.7E-06 1.7E-10 85.0 6.8 51 174-224 1-51 (185)
80 PRK14960 DNA polymerase III su 98.0 0.00011 2.3E-09 88.0 16.4 190 169-372 11-214 (702)
81 PRK06645 DNA polymerase III su 98.0 0.00014 3E-09 86.5 17.2 184 169-372 17-224 (507)
82 KOG0531 Protein phosphatase 1, 98.0 9.1E-07 2E-11 104.4 -1.0 195 565-816 70-267 (414)
83 PRK03992 proteasome-activating 98.0 7.8E-05 1.7E-09 86.7 14.9 156 170-348 128-317 (389)
84 KOG2028 ATPase related to the 98.0 3.8E-05 8.3E-10 83.1 11.1 148 170-344 135-292 (554)
85 PF13855 LRR_8: Leucine rich r 98.0 7.2E-06 1.6E-10 68.2 4.5 58 659-716 2-60 (61)
86 PRK09087 hypothetical protein; 98.0 7.3E-05 1.6E-09 80.1 13.2 136 197-374 44-192 (226)
87 PRK12323 DNA polymerase III su 98.0 9.9E-05 2.1E-09 88.1 15.2 196 169-374 12-222 (700)
88 COG1474 CDC6 Cdc6-related prot 98.0 0.00022 4.7E-09 81.7 17.3 199 171-377 15-238 (366)
89 PRK14957 DNA polymerase III su 98.0 0.0002 4.4E-09 85.7 17.6 177 170-371 13-214 (546)
90 PF00308 Bac_DnaA: Bacterial d 97.9 0.00012 2.5E-09 78.2 13.5 159 187-369 24-200 (219)
91 PRK14962 DNA polymerase III su 97.9 0.00023 5E-09 84.3 17.3 185 169-378 10-220 (472)
92 PRK08084 DNA replication initi 97.9 0.00015 3.3E-09 78.3 14.5 144 196-372 44-204 (235)
93 TIGR02397 dnaX_nterm DNA polym 97.9 0.00018 3.8E-09 83.4 16.1 182 169-375 10-216 (355)
94 KOG2120 SCF ubiquitin ligase, 97.9 1E-07 2.3E-12 100.0 -9.5 172 659-838 186-375 (419)
95 PF13855 LRR_8: Leucine rich r 97.9 1.2E-05 2.7E-10 66.8 4.4 59 567-625 1-60 (61)
96 PRK08691 DNA polymerase III su 97.9 0.00017 3.7E-09 87.2 15.6 191 169-373 12-216 (709)
97 PRK09376 rho transcription ter 97.9 1.3E-05 2.8E-10 90.1 5.6 93 197-292 169-270 (416)
98 PRK05642 DNA replication initi 97.9 0.00025 5.4E-09 76.6 14.7 144 197-371 45-202 (234)
99 PRK14956 DNA polymerase III su 97.9 9.6E-05 2.1E-09 86.1 12.0 187 169-372 14-217 (484)
100 TIGR00678 holB DNA polymerase 97.9 0.00029 6.3E-09 73.5 14.7 149 197-373 14-187 (188)
101 PRK07471 DNA polymerase III su 97.8 0.00044 9.6E-09 79.3 17.0 200 168-377 14-238 (365)
102 PRK05896 DNA polymerase III su 97.8 0.00017 3.7E-09 86.3 13.7 190 169-372 12-215 (605)
103 PRK07940 DNA polymerase III su 97.8 0.00027 5.8E-09 81.8 14.9 177 172-375 4-211 (394)
104 PHA02544 44 clamp loader, smal 97.8 0.00021 4.6E-09 81.2 13.6 151 168-344 16-171 (316)
105 PRK14964 DNA polymerase III su 97.8 0.00044 9.4E-09 81.6 16.4 179 169-372 9-212 (491)
106 cd01128 rho_factor Transcripti 97.8 2.3E-05 5.1E-10 84.6 5.4 93 196-291 15-116 (249)
107 PRK14955 DNA polymerase III su 97.8 0.00024 5.2E-09 83.1 14.2 196 169-372 12-223 (397)
108 TIGR02903 spore_lon_C ATP-depe 97.8 0.00023 5E-09 87.4 14.6 174 169-347 150-367 (615)
109 PRK14087 dnaA chromosomal repl 97.8 0.00019 4.2E-09 84.8 13.2 164 197-378 141-320 (450)
110 PRK14970 DNA polymerase III su 97.8 0.00029 6.3E-09 81.9 14.5 180 169-372 13-204 (367)
111 PRK07994 DNA polymerase III su 97.8 0.00036 7.8E-09 84.8 15.4 190 169-372 12-215 (647)
112 COG3903 Predicted ATPase [Gene 97.8 1.1E-05 2.3E-10 90.1 2.1 236 195-440 12-292 (414)
113 KOG0531 Protein phosphatase 1, 97.8 9.3E-06 2E-10 95.8 1.8 221 511-751 91-320 (414)
114 PRK08903 DnaA regulatory inact 97.7 0.00018 4E-09 77.5 11.3 172 171-379 16-201 (227)
115 TIGR02639 ClpA ATP-dependent C 97.7 0.00027 5.9E-09 89.1 14.4 67 149-223 163-229 (731)
116 PRK09112 DNA polymerase III su 97.7 0.00035 7.5E-09 79.7 13.8 196 168-377 18-240 (351)
117 PF14516 AAA_35: AAA-like doma 97.7 0.00082 1.8E-08 76.5 16.8 267 168-450 6-324 (331)
118 PRK14951 DNA polymerase III su 97.7 0.00067 1.4E-08 82.4 16.6 193 170-372 13-220 (618)
119 PRK14969 DNA polymerase III su 97.7 0.00053 1.1E-08 82.7 15.8 178 170-372 13-215 (527)
120 KOG4341 F-box protein containi 97.7 2.1E-06 4.5E-11 94.8 -4.4 253 564-840 161-440 (483)
121 PRK09111 DNA polymerase III su 97.7 0.00047 1E-08 83.8 14.4 196 169-373 20-229 (598)
122 TIGR03689 pup_AAA proteasome A 97.7 0.00053 1.1E-08 81.3 14.3 162 168-346 177-378 (512)
123 TIGR02881 spore_V_K stage V sp 97.7 0.00044 9.6E-09 76.1 13.0 151 174-347 7-192 (261)
124 PTZ00361 26 proteosome regulat 97.6 0.00042 9.2E-09 80.9 12.8 156 170-348 180-369 (438)
125 PRK14088 dnaA chromosomal repl 97.6 0.00039 8.5E-09 82.1 12.5 151 197-370 130-298 (440)
126 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.3E-11 101.2 -7.4 125 659-817 165-292 (1096)
127 PRK14954 DNA polymerase III su 97.6 0.0014 3E-08 79.9 17.4 195 169-371 12-222 (620)
128 PRK12422 chromosomal replicati 97.6 0.00064 1.4E-08 80.1 14.1 131 197-347 141-285 (445)
129 PRK00149 dnaA chromosomal repl 97.6 0.00046 1E-08 82.3 13.1 155 196-372 147-317 (450)
130 PRK14950 DNA polymerase III su 97.6 0.00065 1.4E-08 83.3 14.6 193 169-374 12-218 (585)
131 PRK06305 DNA polymerase III su 97.6 0.0013 2.8E-08 77.9 16.5 180 170-372 14-217 (451)
132 PRK14958 DNA polymerase III su 97.6 0.00085 1.8E-08 80.4 15.1 179 169-372 12-215 (509)
133 TIGR02880 cbbX_cfxQ probable R 97.6 0.0016 3.4E-08 72.5 16.2 153 174-346 23-208 (284)
134 TIGR00362 DnaA chromosomal rep 97.6 0.00065 1.4E-08 80.0 13.9 154 197-372 136-305 (405)
135 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0018 3.8E-08 82.6 18.4 168 149-345 168-362 (852)
136 PTZ00454 26S protease regulato 97.6 0.00095 2.1E-08 77.5 14.6 157 168-346 140-329 (398)
137 TIGR00767 rho transcription te 97.5 0.00017 3.8E-09 81.6 7.6 93 197-292 168-269 (415)
138 PRK14959 DNA polymerase III su 97.5 0.0016 3.4E-08 78.7 16.0 196 169-378 12-222 (624)
139 KOG4341 F-box protein containi 97.5 3.6E-06 7.9E-11 92.9 -5.7 250 568-841 139-416 (483)
140 PRK06620 hypothetical protein; 97.5 0.00039 8.4E-09 73.9 9.6 128 198-369 45-181 (214)
141 PRK14952 DNA polymerase III su 97.5 0.0027 5.8E-08 76.9 17.7 190 169-372 9-214 (584)
142 PRK07764 DNA polymerase III su 97.5 0.0017 3.6E-08 81.8 16.4 189 169-372 11-216 (824)
143 PRK07133 DNA polymerase III su 97.5 0.0012 2.6E-08 80.8 14.7 181 169-372 14-214 (725)
144 CHL00095 clpC Clp protease ATP 97.5 0.00095 2.1E-08 85.3 14.6 65 150-222 161-225 (821)
145 PRK08451 DNA polymerase III su 97.5 0.0027 5.9E-08 75.7 16.9 183 169-373 10-214 (535)
146 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0011 2.3E-08 78.8 13.4 155 171-348 226-407 (489)
147 CHL00181 cbbX CbbX; Provisiona 97.5 0.0021 4.5E-08 71.5 14.8 130 198-347 60-210 (287)
148 KOG1859 Leucine-rich repeat pr 97.4 2.5E-06 5.5E-11 99.5 -8.5 127 568-718 165-292 (1096)
149 CHL00176 ftsH cell division pr 97.4 0.0013 2.8E-08 80.6 13.9 156 170-347 180-367 (638)
150 PRK10865 protein disaggregatio 97.4 0.0025 5.5E-08 81.4 16.2 66 150-223 160-225 (857)
151 PF05621 TniB: Bacterial TniB 97.4 0.0028 6E-08 69.3 14.0 191 174-371 35-255 (302)
152 KOG2982 Uncharacterized conser 97.4 7.4E-05 1.6E-09 79.1 1.8 188 587-819 68-264 (418)
153 PRK12377 putative replication 97.4 0.0025 5.5E-08 68.9 13.7 36 197-232 101-136 (248)
154 PRK08116 hypothetical protein; 97.4 0.00041 8.9E-09 76.3 7.7 102 198-316 115-221 (268)
155 PRK14948 DNA polymerase III su 97.3 0.0055 1.2E-07 75.2 17.9 192 169-373 12-218 (620)
156 PRK14971 DNA polymerase III su 97.3 0.0037 8.1E-08 76.6 16.3 176 170-371 14-216 (614)
157 PRK14953 DNA polymerase III su 97.3 0.0059 1.3E-07 72.8 17.3 180 169-373 12-216 (486)
158 TIGR03346 chaperone_ClpB ATP-d 97.3 0.003 6.5E-08 81.1 15.6 66 150-223 155-220 (852)
159 PRK06647 DNA polymerase III su 97.3 0.0067 1.5E-07 73.6 17.6 188 169-372 12-215 (563)
160 KOG2543 Origin recognition com 97.3 0.003 6.4E-08 69.9 13.0 163 172-345 5-192 (438)
161 PRK14086 dnaA chromosomal repl 97.2 0.0029 6.3E-08 76.1 13.5 129 198-348 315-461 (617)
162 TIGR01241 FtsH_fam ATP-depende 97.2 0.002 4.3E-08 77.9 12.3 157 169-347 51-239 (495)
163 PRK14965 DNA polymerase III su 97.2 0.0032 7E-08 76.9 13.9 189 169-371 12-214 (576)
164 PRK05707 DNA polymerase III su 97.2 0.0074 1.6E-07 68.3 15.8 93 278-377 107-203 (328)
165 PRK11034 clpA ATP-dependent Cl 97.2 0.0017 3.6E-08 81.1 11.6 65 150-222 168-232 (758)
166 PF00004 AAA: ATPase family as 97.2 0.0016 3.4E-08 63.3 9.1 23 200-222 1-23 (132)
167 PRK05563 DNA polymerase III su 97.2 0.0067 1.5E-07 73.8 16.0 190 169-372 12-215 (559)
168 PF12799 LRR_4: Leucine Rich r 97.1 0.00036 7.7E-09 53.5 3.0 36 781-816 1-36 (44)
169 KOG2982 Uncharacterized conser 97.1 0.00018 3.8E-09 76.3 1.6 76 549-624 72-156 (418)
170 PRK07952 DNA replication prote 97.1 0.0051 1.1E-07 66.4 12.7 36 197-232 99-134 (244)
171 COG1373 Predicted ATPase (AAA+ 97.1 0.0039 8.5E-08 72.7 12.6 119 199-342 39-163 (398)
172 COG1222 RPT1 ATP-dependent 26S 97.1 0.012 2.5E-07 64.9 14.5 173 171-370 149-356 (406)
173 smart00382 AAA ATPases associa 97.0 0.0011 2.4E-08 64.7 6.0 34 198-231 3-36 (148)
174 KOG0989 Replication factor C, 97.0 0.0057 1.2E-07 65.9 11.5 191 169-376 32-230 (346)
175 KOG3665 ZYG-1-like serine/thre 97.0 0.00024 5.3E-09 87.7 1.0 128 681-816 122-262 (699)
176 PRK08181 transposase; Validate 96.9 0.0067 1.4E-07 66.5 11.8 35 198-232 107-141 (269)
177 TIGR01243 CDC48 AAA family ATP 96.9 0.0079 1.7E-07 76.3 14.3 154 170-346 175-359 (733)
178 PRK10536 hypothetical protein; 96.9 0.0033 7.2E-08 67.4 9.1 54 171-229 53-108 (262)
179 PRK10865 protein disaggregatio 96.9 0.01 2.2E-07 76.0 14.9 52 172-223 567-624 (857)
180 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0019 4.2E-08 70.2 7.0 93 197-292 69-177 (274)
181 COG2255 RuvB Holliday junction 96.9 0.0061 1.3E-07 65.0 10.4 173 169-373 22-219 (332)
182 PRK11331 5-methylcytosine-spec 96.9 0.0024 5.3E-08 73.7 8.0 56 172-232 174-231 (459)
183 KOG2227 Pre-initiation complex 96.9 0.018 4E-07 65.5 14.5 172 170-346 147-338 (529)
184 COG0593 DnaA ATPase involved i 96.9 0.0066 1.4E-07 69.5 11.3 132 196-348 112-259 (408)
185 PF12799 LRR_4: Leucine Rich r 96.8 0.0013 2.7E-08 50.5 3.7 35 659-693 2-36 (44)
186 PRK06526 transposase; Provisio 96.8 0.0027 5.9E-08 69.1 7.6 27 197-223 98-124 (254)
187 TIGR00602 rad24 checkpoint pro 96.8 0.005 1.1E-07 75.0 10.5 55 168-222 79-135 (637)
188 PRK09183 transposase/IS protei 96.8 0.0031 6.7E-08 69.1 7.8 35 197-231 102-136 (259)
189 KOG3678 SARM protein (with ste 96.8 0.0036 7.8E-08 69.8 8.1 85 1-91 617-709 (832)
190 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 75.4 13.2 154 171-346 451-635 (733)
191 PF05673 DUF815: Protein of un 96.8 0.0096 2.1E-07 63.1 10.7 57 168-224 22-79 (249)
192 KOG3665 ZYG-1-like serine/thre 96.7 0.00037 8.1E-09 86.1 0.2 141 590-751 122-265 (699)
193 TIGR00763 lon ATP-dependent pr 96.7 0.037 8E-07 70.5 18.1 53 173-225 320-375 (775)
194 PLN00020 ribulose bisphosphate 96.7 0.027 5.8E-07 63.2 14.4 31 195-225 146-176 (413)
195 TIGR02639 ClpA ATP-dependent C 96.7 0.014 3E-07 74.0 14.0 51 172-222 453-509 (731)
196 PRK07399 DNA polymerase III su 96.7 0.021 4.5E-07 64.3 14.0 191 172-375 3-219 (314)
197 PRK07261 topology modulation p 96.7 0.0051 1.1E-07 63.0 8.3 23 199-221 2-24 (171)
198 KOG0730 AAA+-type ATPase [Post 96.7 0.016 3.5E-07 68.6 13.1 164 172-361 433-631 (693)
199 KOG0741 AAA+-type ATPase [Post 96.7 0.038 8.2E-07 63.5 15.5 131 195-346 536-686 (744)
200 TIGR02640 gas_vesic_GvpN gas v 96.7 0.032 7E-07 61.4 15.1 24 199-222 23-46 (262)
201 PF01695 IstB_IS21: IstB-like 96.7 0.0019 4E-08 66.6 4.7 36 197-232 47-82 (178)
202 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0069 1.5E-07 77.3 10.7 51 173-223 566-622 (852)
203 PRK08118 topology modulation p 96.6 0.0048 1E-07 62.9 7.3 33 199-231 3-38 (167)
204 PRK00771 signal recognition pa 96.6 0.036 7.8E-07 65.0 14.9 106 104-224 4-122 (437)
205 KOG0733 Nuclear AAA ATPase (VC 96.6 0.016 3.4E-07 67.7 11.4 55 170-224 187-250 (802)
206 TIGR03346 chaperone_ClpB ATP-d 96.5 0.011 2.4E-07 76.0 11.0 52 173-224 565-622 (852)
207 COG5238 RNA1 Ran GTPase-activa 96.5 0.00058 1.2E-08 71.7 -0.6 110 637-749 156-285 (388)
208 PF13207 AAA_17: AAA domain; P 96.5 0.0025 5.4E-08 61.1 3.9 23 199-221 1-23 (121)
209 cd01131 PilT Pilus retraction 96.5 0.0084 1.8E-07 63.0 8.1 110 198-319 2-112 (198)
210 COG0542 clpA ATP-binding subun 96.4 0.035 7.5E-07 68.4 13.5 120 173-303 491-620 (786)
211 PRK06921 hypothetical protein; 96.4 0.0079 1.7E-07 66.1 7.3 36 197-232 117-153 (266)
212 PF07728 AAA_5: AAA domain (dy 96.3 0.0083 1.8E-07 59.1 6.8 22 200-221 2-23 (139)
213 PF04665 Pox_A32: Poxvirus A32 96.3 0.0026 5.6E-08 67.9 3.3 34 199-232 15-48 (241)
214 PRK10787 DNA-binding ATP-depen 96.3 0.08 1.7E-06 67.0 17.0 53 173-225 322-377 (784)
215 cd01858 NGP_1 NGP-1. Autoanti 96.3 0.029 6.2E-07 56.6 10.8 123 44-219 2-124 (157)
216 COG1223 Predicted ATPase (AAA+ 96.3 0.033 7.1E-07 58.5 11.1 151 172-346 120-297 (368)
217 PRK06696 uridine kinase; Valid 96.3 0.007 1.5E-07 65.0 6.5 47 178-224 3-49 (223)
218 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0042 9.2E-08 69.9 4.7 49 174-222 52-103 (361)
219 TIGR00959 ffh signal recogniti 96.3 0.062 1.3E-06 62.9 14.4 27 196-222 98-124 (428)
220 PRK12608 transcription termina 96.3 0.01 2.2E-07 67.1 7.7 105 183-292 121-234 (380)
221 COG1484 DnaC DNA replication p 96.2 0.01 2.2E-07 64.8 7.4 37 196-232 104-140 (254)
222 COG5238 RNA1 Ran GTPase-activa 96.2 0.00062 1.3E-08 71.4 -1.9 39 678-716 89-131 (388)
223 KOG0735 AAA+-type ATPase [Post 96.2 0.016 3.5E-07 68.7 9.3 75 197-289 431-505 (952)
224 PRK08058 DNA polymerase III su 96.2 0.03 6.5E-07 63.8 11.5 157 174-345 6-181 (329)
225 PRK06835 DNA replication prote 96.2 0.0091 2E-07 67.5 7.1 35 198-232 184-218 (329)
226 PRK06871 DNA polymerase III su 96.2 0.11 2.4E-06 58.6 15.6 172 183-373 12-199 (325)
227 PRK14974 cell division protein 96.2 0.082 1.8E-06 59.9 14.5 29 196-224 139-167 (336)
228 KOG1644 U2-associated snRNP A' 96.2 0.0083 1.8E-07 60.9 5.8 56 568-624 43-98 (233)
229 PRK10867 signal recognition pa 96.2 0.075 1.6E-06 62.2 14.4 29 196-224 99-127 (433)
230 PF02562 PhoH: PhoH-like prote 96.2 0.022 4.8E-07 59.5 9.0 128 178-317 5-157 (205)
231 COG1618 Predicted nucleotide k 96.1 0.0059 1.3E-07 59.7 4.2 38 198-235 6-45 (179)
232 PRK11889 flhF flagellar biosyn 96.1 0.12 2.5E-06 59.0 14.9 38 195-232 239-276 (436)
233 PHA00729 NTP-binding motif con 96.1 0.03 6.4E-07 59.2 9.7 27 196-222 16-42 (226)
234 CHL00095 clpC Clp protease ATP 96.1 0.021 4.6E-07 73.1 10.3 119 173-301 509-636 (821)
235 PRK10733 hflB ATP-dependent me 96.1 0.021 4.5E-07 71.0 9.8 152 173-346 152-335 (644)
236 KOG4579 Leucine-rich repeat (L 96.1 0.00028 6.1E-09 66.7 -5.0 34 782-815 78-111 (177)
237 PRK08769 DNA polymerase III su 96.1 0.19 4.1E-06 56.6 16.4 92 278-377 113-208 (319)
238 KOG0731 AAA+-type ATPase conta 96.0 0.054 1.2E-06 66.3 12.6 176 170-373 308-520 (774)
239 PRK07993 DNA polymerase III su 96.0 0.12 2.6E-06 58.8 14.6 172 182-373 11-200 (334)
240 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.048 1E-06 54.5 10.0 117 198-317 3-139 (159)
241 KOG1644 U2-associated snRNP A' 95.9 0.012 2.5E-07 59.9 5.3 85 659-750 43-127 (233)
242 COG3267 ExeA Type II secretory 95.9 0.24 5.3E-06 52.6 15.2 197 174-378 29-246 (269)
243 PRK11034 clpA ATP-dependent Cl 95.9 0.022 4.8E-07 71.3 9.1 50 173-222 458-513 (758)
244 COG0466 Lon ATP-dependent Lon 95.9 0.045 9.8E-07 65.6 10.9 54 172-225 322-378 (782)
245 PRK08939 primosomal protein Dn 95.9 0.03 6.4E-07 62.8 9.2 37 196-232 155-191 (306)
246 TIGR00064 ftsY signal recognit 95.8 0.04 8.8E-07 60.7 9.8 38 195-232 70-107 (272)
247 PF00448 SRP54: SRP54-type pro 95.8 0.031 6.7E-07 58.5 8.5 36 197-232 1-36 (196)
248 PRK07667 uridine kinase; Provi 95.8 0.018 4E-07 60.2 6.6 41 182-223 3-43 (193)
249 PF13177 DNA_pol3_delta2: DNA 95.7 0.085 1.8E-06 53.4 10.9 137 177-333 1-161 (162)
250 TIGR01425 SRP54_euk signal rec 95.7 0.053 1.2E-06 63.0 10.5 36 196-231 99-134 (429)
251 cd01120 RecA-like_NTPases RecA 95.7 0.059 1.3E-06 54.1 9.8 34 199-232 1-34 (165)
252 COG0470 HolB ATPase involved i 95.7 0.084 1.8E-06 60.1 12.2 143 174-335 2-170 (325)
253 PRK08699 DNA polymerase III su 95.6 0.08 1.7E-06 60.0 11.4 85 278-373 114-202 (325)
254 PRK06964 DNA polymerase III su 95.6 0.18 3.8E-06 57.3 13.8 88 278-375 132-223 (342)
255 PRK05541 adenylylsulfate kinas 95.6 0.015 3.4E-07 59.8 5.0 37 196-232 6-42 (176)
256 KOG0744 AAA+-type ATPase [Post 95.5 0.051 1.1E-06 59.0 8.7 36 197-232 177-216 (423)
257 KOG0991 Replication factor C, 95.5 0.023 5.1E-07 58.6 5.8 51 169-222 23-73 (333)
258 PRK04296 thymidine kinase; Pro 95.5 0.02 4.3E-07 59.8 5.5 110 198-317 3-117 (190)
259 KOG2739 Leucine-rich acidic nu 95.5 0.0096 2.1E-07 63.0 3.0 85 659-750 44-130 (260)
260 PRK12724 flagellar biosynthesi 95.5 0.51 1.1E-05 54.6 17.0 25 197-221 223-247 (432)
261 PRK06090 DNA polymerase III su 95.5 0.26 5.7E-06 55.4 14.5 89 279-377 109-201 (319)
262 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 56.6 3.6 22 200-221 1-22 (129)
263 PRK05703 flhF flagellar biosyn 95.4 0.23 4.9E-06 58.5 14.4 36 197-232 221-258 (424)
264 PF13671 AAA_33: AAA domain; P 95.4 0.061 1.3E-06 53.0 8.4 24 199-222 1-24 (143)
265 PRK09361 radB DNA repair and r 95.4 0.048 1E-06 58.6 8.1 47 185-232 12-58 (225)
266 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.074 1.6E-06 52.7 8.5 109 197-330 26-140 (144)
267 PF00485 PRK: Phosphoribulokin 95.3 0.017 3.6E-07 60.6 4.1 25 199-223 1-25 (194)
268 cd03214 ABC_Iron-Siderophores_ 95.3 0.071 1.5E-06 55.1 8.7 128 197-330 25-171 (180)
269 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.062 1.3E-06 55.6 8.3 23 199-221 1-23 (183)
270 KOG2739 Leucine-rich acidic nu 95.2 0.0097 2.1E-07 63.0 2.0 41 585-625 60-102 (260)
271 PRK15455 PrkA family serine pr 95.2 0.022 4.7E-07 67.5 5.1 53 172-224 75-130 (644)
272 PF01583 APS_kinase: Adenylyls 95.2 0.031 6.8E-07 55.6 5.4 36 197-232 2-37 (156)
273 KOG4579 Leucine-rich repeat (L 95.2 0.0016 3.6E-08 61.7 -3.4 45 771-815 90-134 (177)
274 PF13604 AAA_30: AAA domain; P 95.2 0.057 1.2E-06 56.6 7.7 105 197-318 18-133 (196)
275 COG2812 DnaX DNA polymerase II 95.1 0.15 3.2E-06 60.5 11.6 186 170-369 13-212 (515)
276 KOG1947 Leucine rich repeat pr 95.1 0.0031 6.6E-08 76.1 -2.5 98 680-792 268-373 (482)
277 cd01121 Sms Sms (bacterial rad 95.0 0.11 2.4E-06 59.9 9.9 49 183-232 69-117 (372)
278 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.032 7E-07 59.8 5.2 124 197-322 30-205 (254)
279 cd03238 ABC_UvrA The excision 95.0 0.062 1.3E-06 55.1 7.1 125 197-331 21-162 (176)
280 COG4608 AppF ABC-type oligopep 94.9 0.067 1.5E-06 57.5 7.4 144 196-343 38-199 (268)
281 KOG0734 AAA+-type ATPase conta 94.9 0.091 2E-06 60.6 8.8 151 171-346 302-484 (752)
282 PRK14722 flhF flagellar biosyn 94.9 0.21 4.6E-06 57.2 11.8 37 196-232 136-174 (374)
283 PRK04132 replication factor C 94.9 0.34 7.4E-06 61.1 14.5 149 205-373 574-727 (846)
284 PRK05480 uridine/cytidine kina 94.9 0.025 5.4E-07 60.0 4.1 27 195-221 4-30 (209)
285 COG0572 Udk Uridine kinase [Nu 94.9 0.03 6.6E-07 58.5 4.5 30 195-224 6-35 (218)
286 PRK05022 anaerobic nitric oxid 94.9 0.12 2.6E-06 62.6 10.4 51 171-222 185-235 (509)
287 cd01857 HSR1_MMR1 HSR1/MMR1. 94.9 0.2 4.3E-06 49.5 10.2 51 42-94 3-53 (141)
288 cd01129 PulE-GspE PulE/GspE Th 94.9 0.092 2E-06 57.7 8.5 106 177-298 63-169 (264)
289 KOG2228 Origin recognition com 94.8 0.28 6E-06 54.0 11.7 175 171-346 22-219 (408)
290 cd03222 ABC_RNaseL_inhibitor T 94.8 0.1 2.2E-06 53.6 8.2 114 197-331 25-146 (177)
291 cd01123 Rad51_DMC1_radA Rad51_ 94.8 0.071 1.5E-06 57.7 7.5 38 195-232 17-60 (235)
292 cd01393 recA_like RecA is a b 94.8 0.12 2.6E-06 55.5 9.2 47 185-232 8-60 (226)
293 PRK03839 putative kinase; Prov 94.8 0.023 4.9E-07 58.8 3.4 24 199-222 2-25 (180)
294 PTZ00301 uridine kinase; Provi 94.7 0.028 6E-07 59.4 3.9 29 197-225 3-31 (210)
295 PRK08233 hypothetical protein; 94.7 0.024 5.3E-07 58.5 3.5 26 197-222 3-28 (182)
296 PRK10416 signal recognition pa 94.7 0.2 4.4E-06 56.5 11.0 29 196-224 113-141 (318)
297 TIGR01420 pilT_fam pilus retra 94.7 0.068 1.5E-06 61.3 7.3 110 197-318 122-232 (343)
298 TIGR01817 nifA Nif-specific re 94.7 0.26 5.6E-06 60.3 12.8 51 170-221 193-243 (534)
299 PRK13531 regulatory ATPase Rav 94.7 0.048 1E-06 63.9 5.9 46 172-222 19-64 (498)
300 cd00983 recA RecA is a bacter 94.7 0.13 2.8E-06 57.7 9.2 49 183-232 41-90 (325)
301 COG0464 SpoVK ATPases of the A 94.6 0.085 1.8E-06 63.9 8.4 154 172-347 241-424 (494)
302 PF07726 AAA_3: ATPase family 94.6 0.02 4.4E-07 54.5 2.3 28 200-227 2-29 (131)
303 PRK04040 adenylate kinase; Pro 94.6 0.035 7.5E-07 57.7 4.3 25 198-222 3-27 (188)
304 TIGR00235 udk uridine kinase. 94.6 0.031 6.7E-07 59.2 4.0 28 195-222 4-31 (207)
305 PRK06762 hypothetical protein; 94.6 0.03 6.6E-07 56.9 3.7 25 197-221 2-26 (166)
306 cd03216 ABC_Carb_Monos_I This 94.6 0.12 2.6E-06 52.4 8.1 123 197-330 26-155 (163)
307 cd02019 NK Nucleoside/nucleoti 94.6 0.03 6.4E-07 47.7 3.0 23 199-221 1-23 (69)
308 PF08937 DUF1863: MTH538 TIR-l 94.5 0.075 1.6E-06 51.7 6.1 84 1-89 5-105 (130)
309 COG2607 Predicted ATPase (AAA+ 94.5 0.38 8.3E-06 50.5 11.3 119 169-316 56-183 (287)
310 PF00910 RNA_helicase: RNA hel 94.5 0.024 5.2E-07 53.1 2.4 26 200-225 1-26 (107)
311 KOG0728 26S proteasome regulat 94.5 0.31 6.7E-06 51.0 10.5 147 174-346 147-331 (404)
312 PRK00625 shikimate kinase; Pro 94.5 0.03 6.5E-07 57.3 3.3 24 199-222 2-25 (173)
313 PRK12723 flagellar biosynthesi 94.4 0.4 8.6E-06 55.5 12.7 27 196-222 173-199 (388)
314 cd03223 ABCD_peroxisomal_ALDP 94.4 0.088 1.9E-06 53.6 6.6 123 197-331 27-161 (166)
315 PF03215 Rad17: Rad17 cell cyc 94.4 0.47 1E-05 57.1 13.6 59 172-232 18-78 (519)
316 PRK00131 aroK shikimate kinase 94.3 0.036 7.8E-07 56.7 3.5 26 197-222 4-29 (175)
317 PRK08356 hypothetical protein; 94.3 0.19 4.1E-06 52.6 9.0 22 197-218 5-26 (195)
318 cd03240 ABC_Rad50 The catalyti 94.3 0.15 3.2E-06 53.9 8.2 21 198-218 23-43 (204)
319 PRK12727 flagellar biosynthesi 94.3 0.36 7.8E-06 57.3 12.0 29 196-224 349-377 (559)
320 PTZ00088 adenylate kinase 1; P 94.3 0.073 1.6E-06 57.0 5.9 22 200-221 9-30 (229)
321 PRK09354 recA recombinase A; P 94.2 0.25 5.5E-06 55.9 10.2 49 183-232 46-95 (349)
322 PRK06217 hypothetical protein; 94.2 0.16 3.5E-06 52.6 8.2 24 199-222 3-26 (183)
323 PRK13947 shikimate kinase; Pro 94.2 0.036 7.8E-07 56.6 3.2 25 199-223 3-27 (171)
324 TIGR02012 tigrfam_recA protein 94.2 0.11 2.4E-06 58.2 7.3 38 195-232 53-90 (321)
325 TIGR03574 selen_PSTK L-seryl-t 94.2 0.11 2.5E-06 56.7 7.3 25 200-224 2-26 (249)
326 TIGR00708 cobA cob(I)alamin ad 94.1 0.29 6.4E-06 49.6 9.5 118 197-316 5-140 (173)
327 TIGR01360 aden_kin_iso1 adenyl 94.1 0.043 9.3E-07 57.0 3.6 26 196-221 2-27 (188)
328 cd03247 ABCC_cytochrome_bd The 94.1 0.19 4E-06 51.8 8.3 121 197-331 28-170 (178)
329 cd03115 SRP The signal recogni 94.0 0.36 7.7E-06 49.4 10.3 26 199-224 2-27 (173)
330 PRK06547 hypothetical protein; 94.0 0.05 1.1E-06 55.6 3.9 27 195-221 13-39 (172)
331 KOG0651 26S proteasome regulat 94.0 0.2 4.4E-06 54.3 8.4 30 196-225 165-194 (388)
332 PRK05986 cob(I)alamin adenolsy 94.0 0.39 8.4E-06 49.5 10.2 119 196-316 21-158 (191)
333 PRK12726 flagellar biosynthesi 94.0 0.86 1.9E-05 52.0 13.8 38 195-232 204-241 (407)
334 KOG2004 Mitochondrial ATP-depe 94.0 0.053 1.2E-06 64.7 4.4 53 173-225 411-466 (906)
335 PF08433 KTI12: Chromatin asso 94.0 0.13 2.9E-06 56.4 7.4 26 198-223 2-27 (270)
336 KOG0733 Nuclear AAA ATPase (VC 94.0 0.32 6.9E-06 57.4 10.5 127 197-346 545-692 (802)
337 COG4088 Predicted nucleotide k 94.0 0.03 6.5E-07 57.0 2.0 29 198-226 2-30 (261)
338 COG0488 Uup ATPase components 94.0 0.21 4.6E-06 60.1 9.6 129 198-332 349-511 (530)
339 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.13 2.9E-06 51.7 6.9 123 198-331 26-154 (157)
340 PF00437 T2SE: Type II/IV secr 94.0 0.044 9.6E-07 60.7 3.6 125 173-315 104-231 (270)
341 KOG1947 Leucine rich repeat pr 93.9 0.0059 1.3E-07 73.6 -3.8 129 566-714 187-330 (482)
342 COG2884 FtsE Predicted ATPase 93.9 0.21 4.5E-06 50.6 7.7 54 268-323 145-204 (223)
343 cd03230 ABC_DR_subfamily_A Thi 93.9 0.15 3.2E-06 52.3 7.1 125 197-330 26-168 (173)
344 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.19 4.1E-06 54.7 8.3 25 197-221 25-49 (246)
345 KOG1051 Chaperone HSP104 and r 93.8 0.64 1.4E-05 58.5 13.5 106 173-291 562-673 (898)
346 PRK00889 adenylylsulfate kinas 93.8 0.084 1.8E-06 54.2 5.2 28 196-223 3-30 (175)
347 TIGR02858 spore_III_AA stage I 93.8 0.16 3.5E-06 55.8 7.6 119 195-320 109-233 (270)
348 cd01855 YqeH YqeH. YqeH is an 93.8 0.45 9.8E-06 49.5 10.7 40 176-220 111-150 (190)
349 PF00406 ADK: Adenylate kinase 93.8 0.049 1.1E-06 54.5 3.3 20 202-221 1-20 (151)
350 cd02028 UMPK_like Uridine mono 93.8 0.069 1.5E-06 55.1 4.5 25 199-223 1-25 (179)
351 PLN02796 D-glycerate 3-kinase 93.8 0.29 6.2E-06 55.2 9.5 29 195-223 98-126 (347)
352 PRK09270 nucleoside triphospha 93.7 0.093 2E-06 56.5 5.5 30 195-224 31-60 (229)
353 cd01130 VirB11-like_ATPase Typ 93.7 0.059 1.3E-06 56.0 3.8 92 197-297 25-119 (186)
354 PRK03846 adenylylsulfate kinas 93.7 0.096 2.1E-06 55.0 5.4 37 195-231 22-58 (198)
355 cd01135 V_A-ATPase_B V/A-type 93.7 0.18 3.9E-06 55.0 7.5 91 198-292 70-180 (276)
356 cd03228 ABCC_MRP_Like The MRP 93.7 0.3 6.5E-06 49.9 8.9 124 197-330 28-167 (171)
357 PRK15429 formate hydrogenlyase 93.7 0.16 3.6E-06 64.0 8.3 50 171-221 374-423 (686)
358 PRK06067 flagellar accessory p 93.6 0.22 4.9E-06 53.8 8.3 47 185-232 14-60 (234)
359 cd00227 CPT Chloramphenicol (C 93.6 0.059 1.3E-06 55.4 3.5 25 198-222 3-27 (175)
360 cd03246 ABCC_Protease_Secretio 93.6 0.23 5.1E-06 50.8 8.0 126 197-331 28-169 (173)
361 TIGR03499 FlhF flagellar biosy 93.6 0.23 5E-06 55.2 8.4 28 196-223 193-220 (282)
362 PRK05439 pantothenate kinase; 93.5 0.1 2.2E-06 58.2 5.5 39 185-223 74-112 (311)
363 TIGR03596 GTPase_YlqF ribosome 93.5 0.56 1.2E-05 52.1 11.4 23 197-219 118-140 (276)
364 KOG1514 Origin recognition com 93.5 0.25 5.5E-06 59.3 8.8 138 171-313 394-546 (767)
365 COG1428 Deoxynucleoside kinase 93.5 0.059 1.3E-06 55.6 3.2 26 197-222 4-29 (216)
366 cd02027 APSK Adenosine 5'-phos 93.4 0.36 7.8E-06 48.1 8.7 24 199-222 1-24 (149)
367 cd01394 radB RadB. The archaea 93.4 0.15 3.3E-06 54.4 6.5 48 184-232 7-54 (218)
368 KOG1969 DNA replication checkp 93.4 0.17 3.6E-06 60.9 7.1 74 195-290 324-399 (877)
369 PF00560 LRR_1: Leucine Rich R 93.4 0.027 5.8E-07 36.1 0.3 21 782-802 1-21 (22)
370 PRK14723 flhF flagellar biosyn 93.4 0.88 1.9E-05 56.7 13.5 26 197-222 185-210 (767)
371 TIGR00416 sms DNA repair prote 93.3 0.33 7.1E-06 57.7 9.6 51 181-232 79-129 (454)
372 TIGR02237 recomb_radB DNA repa 93.3 0.12 2.6E-06 54.8 5.5 38 195-232 10-47 (209)
373 cd02024 NRK1 Nicotinamide ribo 93.3 0.057 1.2E-06 55.8 2.8 23 199-221 1-23 (187)
374 cd02025 PanK Pantothenate kina 93.3 0.058 1.3E-06 57.6 3.0 24 199-222 1-24 (220)
375 PRK13949 shikimate kinase; Pro 93.3 0.064 1.4E-06 54.7 3.1 24 199-222 3-26 (169)
376 cd02023 UMPK Uridine monophosp 93.3 0.055 1.2E-06 56.8 2.8 23 199-221 1-23 (198)
377 PF03205 MobB: Molybdopterin g 93.3 0.14 3E-06 50.5 5.3 35 198-232 1-36 (140)
378 PF00154 RecA: recA bacterial 93.3 0.26 5.6E-06 55.2 8.1 99 183-291 39-144 (322)
379 PRK06995 flhF flagellar biosyn 93.3 0.89 1.9E-05 54.0 12.9 27 196-222 255-281 (484)
380 PRK11823 DNA repair protein Ra 93.2 0.37 8E-06 57.2 9.9 50 182-232 66-115 (446)
381 COG0465 HflB ATP-dependent Zn 93.2 0.46 1E-05 57.2 10.6 154 169-347 146-334 (596)
382 PRK12678 transcription termina 93.2 0.12 2.5E-06 61.3 5.4 93 197-292 416-517 (672)
383 cd00464 SK Shikimate kinase (S 93.2 0.071 1.5E-06 53.3 3.3 23 200-222 2-24 (154)
384 PRK12337 2-phosphoglycerate ki 93.2 0.13 2.8E-06 60.0 5.7 27 196-222 254-280 (475)
385 COG1875 NYN ribonuclease and A 93.2 0.15 3.2E-06 56.6 5.7 35 279-316 352-388 (436)
386 KOG0729 26S proteasome regulat 93.2 0.12 2.6E-06 54.4 4.9 57 173-234 177-243 (435)
387 KOG0652 26S proteasome regulat 93.2 1.8 3.9E-05 45.8 13.2 53 171-223 169-231 (424)
388 KOG2035 Replication factor C, 93.1 2 4.3E-05 46.3 13.7 182 172-370 12-221 (351)
389 TIGR00150 HI0065_YjeE ATPase, 93.1 0.13 2.8E-06 49.9 4.7 25 197-221 22-46 (133)
390 PRK13948 shikimate kinase; Pro 93.1 0.076 1.7E-06 54.7 3.4 28 195-222 8-35 (182)
391 cd00071 GMPK Guanosine monopho 93.1 0.062 1.3E-06 52.8 2.6 27 199-225 1-27 (137)
392 cd02020 CMPK Cytidine monophos 93.0 0.071 1.5E-06 52.7 3.0 23 199-221 1-23 (147)
393 PRK13946 shikimate kinase; Pro 93.0 0.072 1.6E-06 55.3 3.1 26 197-222 10-35 (184)
394 TIGR02322 phosphon_PhnN phosph 93.0 0.076 1.6E-06 54.8 3.3 25 198-222 2-26 (179)
395 cd00544 CobU Adenosylcobinamid 93.0 0.51 1.1E-05 48.1 9.1 79 200-287 2-82 (169)
396 TIGR02788 VirB11 P-type DNA tr 93.0 0.17 3.7E-06 57.1 6.3 112 196-317 143-254 (308)
397 PF10236 DAP3: Mitochondrial r 93.0 1.9 4E-05 48.7 14.5 48 327-374 258-306 (309)
398 cd03233 ABC_PDR_domain1 The pl 93.0 0.38 8.3E-06 50.6 8.6 27 196-222 32-58 (202)
399 PRK12597 F0F1 ATP synthase sub 93.0 0.21 4.6E-06 58.7 7.1 91 197-291 143-250 (461)
400 PRK10751 molybdopterin-guanine 92.9 0.098 2.1E-06 53.2 3.8 28 196-223 5-32 (173)
401 TIGR00554 panK_bact pantothena 92.9 0.15 3.2E-06 56.6 5.5 28 195-222 60-87 (290)
402 PRK09280 F0F1 ATP synthase sub 92.9 0.28 6.2E-06 57.5 8.0 92 197-291 144-251 (463)
403 PRK05973 replicative DNA helic 92.8 0.18 4E-06 54.0 5.9 37 196-232 63-99 (237)
404 PHA02244 ATPase-like protein 92.8 0.32 6.9E-06 55.2 8.0 46 173-223 96-145 (383)
405 TIGR00390 hslU ATP-dependent p 92.8 0.14 3.1E-06 58.8 5.4 53 173-225 12-75 (441)
406 KOG2123 Uncharacterized conser 92.8 0.0069 1.5E-07 64.1 -4.8 84 589-696 18-103 (388)
407 cd01122 GP4d_helicase GP4d_hel 92.8 0.56 1.2E-05 51.9 10.0 52 196-254 29-81 (271)
408 PRK13975 thymidylate kinase; P 92.7 0.099 2.1E-06 54.7 3.7 26 198-223 3-28 (196)
409 PRK10463 hydrogenase nickel in 92.7 0.21 4.6E-06 55.0 6.2 40 184-226 94-133 (290)
410 COG1066 Sms Predicted ATP-depe 92.7 0.55 1.2E-05 53.3 9.4 97 181-287 78-177 (456)
411 PRK05057 aroK shikimate kinase 92.6 0.094 2E-06 53.7 3.3 26 197-222 4-29 (172)
412 PRK14721 flhF flagellar biosyn 92.6 1.2 2.6E-05 52.0 12.6 26 196-221 190-215 (420)
413 cd02021 GntK Gluconate kinase 92.6 0.083 1.8E-06 52.7 2.8 23 199-221 1-23 (150)
414 PTZ00494 tuzin-like protein; P 92.6 1.2 2.5E-05 51.1 11.8 207 125-345 304-543 (664)
415 KOG1532 GTPase XAB1, interacts 92.6 0.11 2.3E-06 55.3 3.5 41 195-236 17-57 (366)
416 PF03308 ArgK: ArgK protein; 92.6 0.37 8E-06 51.7 7.6 41 183-224 16-56 (266)
417 KOG0924 mRNA splicing factor A 92.6 0.85 1.8E-05 54.3 11.1 25 196-220 370-395 (1042)
418 PF00158 Sigma54_activat: Sigm 92.6 0.13 2.9E-06 52.3 4.3 45 175-220 1-45 (168)
419 KOG1970 Checkpoint RAD17-RFC c 92.6 0.59 1.3E-05 54.7 9.8 42 180-222 89-135 (634)
420 TIGR02238 recomb_DMC1 meiotic 92.6 0.38 8.1E-06 54.2 8.2 66 183-255 83-154 (313)
421 COG0468 RecA RecA/RadA recombi 92.6 0.45 9.7E-06 52.3 8.5 38 195-232 58-95 (279)
422 PRK05201 hslU ATP-dependent pr 92.6 0.19 4.1E-06 57.9 5.8 53 173-225 15-78 (443)
423 cd03283 ABC_MutS-like MutS-lik 92.5 0.55 1.2E-05 49.3 9.0 23 198-220 26-48 (199)
424 PRK14526 adenylate kinase; Pro 92.5 0.21 4.5E-06 52.9 5.8 22 200-221 3-24 (211)
425 TIGR01351 adk adenylate kinase 92.5 0.2 4.4E-06 53.1 5.9 22 200-221 2-23 (210)
426 COG0703 AroK Shikimate kinase 92.5 0.1 2.2E-06 52.6 3.2 28 198-225 3-30 (172)
427 PF03266 NTPase_1: NTPase; In 92.5 0.15 3.2E-06 51.9 4.5 24 200-223 2-25 (168)
428 PRK14529 adenylate kinase; Pro 92.5 0.37 8E-06 51.3 7.6 90 200-296 3-95 (223)
429 TIGR01039 atpD ATP synthase, F 92.5 0.51 1.1E-05 55.3 9.3 93 197-292 143-251 (461)
430 PLN03046 D-glycerate 3-kinase; 92.5 0.34 7.4E-06 55.6 7.6 29 195-223 210-238 (460)
431 TIGR02782 TrbB_P P-type conjug 92.4 0.26 5.6E-06 55.2 6.7 88 198-296 133-222 (299)
432 PF00625 Guanylate_kin: Guanyl 92.4 0.11 2.4E-06 53.8 3.4 34 197-230 2-35 (183)
433 PRK14493 putative bifunctional 92.4 0.17 3.6E-06 55.8 4.9 34 198-232 2-35 (274)
434 COG0541 Ffh Signal recognition 92.3 5.6 0.00012 45.9 16.9 42 182-223 79-126 (451)
435 KOG0727 26S proteasome regulat 92.3 0.19 4.1E-06 52.6 4.8 52 173-224 155-216 (408)
436 PRK14530 adenylate kinase; Pro 92.3 0.11 2.3E-06 55.4 3.3 23 199-221 5-27 (215)
437 PRK12339 2-phosphoglycerate ki 92.3 0.13 2.7E-06 53.9 3.7 25 197-221 3-27 (197)
438 COG0055 AtpD F0F1-type ATP syn 92.3 0.32 6.9E-06 54.1 6.8 101 197-301 147-268 (468)
439 cd02034 CooC The accessory pro 92.2 0.28 6E-06 46.6 5.7 32 200-231 2-33 (116)
440 PF08423 Rad51: Rad51; InterP 92.2 0.27 5.8E-06 53.8 6.4 64 184-254 26-95 (256)
441 COG1936 Predicted nucleotide k 92.2 0.1 2.2E-06 52.1 2.7 20 199-218 2-21 (180)
442 TIGR03263 guanyl_kin guanylate 92.2 0.096 2.1E-06 54.0 2.7 24 198-221 2-25 (180)
443 PF06309 Torsin: Torsin; Inte 92.2 0.28 6E-06 46.7 5.5 39 182-220 38-76 (127)
444 COG1124 DppF ABC-type dipeptid 92.2 0.13 2.7E-06 54.3 3.5 23 197-219 33-55 (252)
445 COG0563 Adk Adenylate kinase a 92.2 0.11 2.4E-06 53.3 3.1 23 199-221 2-24 (178)
446 PRK06002 fliI flagellum-specif 92.1 0.19 4.1E-06 58.7 5.3 24 197-220 165-188 (450)
447 cd01132 F1_ATPase_alpha F1 ATP 92.1 0.3 6.6E-06 53.2 6.5 92 198-296 70-180 (274)
448 COG0003 ArsA Predicted ATPase 92.1 0.27 5.8E-06 55.3 6.2 35 197-231 2-36 (322)
449 PF12775 AAA_7: P-loop contain 92.1 0.17 3.7E-06 55.9 4.6 35 183-221 23-57 (272)
450 PRK03731 aroL shikimate kinase 92.1 0.12 2.6E-06 52.8 3.2 24 199-222 4-27 (171)
451 COG3640 CooC CO dehydrogenase 92.1 0.24 5.2E-06 51.9 5.3 26 199-224 2-27 (255)
452 COG1102 Cmk Cytidylate kinase 92.0 0.12 2.6E-06 50.8 3.0 24 199-222 2-25 (179)
453 TIGR00176 mobB molybdopterin-g 92.0 0.18 3.9E-06 50.6 4.4 26 199-224 1-26 (155)
454 PF00006 ATP-synt_ab: ATP synt 92.0 0.24 5.3E-06 52.4 5.5 86 198-291 16-118 (215)
455 PRK04182 cytidylate kinase; Pr 91.9 0.13 2.8E-06 52.9 3.3 24 199-222 2-25 (180)
456 PRK15115 response regulator Gl 91.9 11 0.00024 44.9 20.3 48 173-221 134-181 (444)
457 COG1763 MobB Molybdopterin-gua 91.9 0.15 3.2E-06 51.1 3.5 36 197-232 2-37 (161)
458 COG0529 CysC Adenylylsulfate k 91.9 0.25 5.4E-06 49.4 5.0 34 195-228 21-54 (197)
459 TIGR01313 therm_gnt_kin carboh 91.9 0.1 2.2E-06 52.8 2.5 22 200-221 1-22 (163)
460 PRK08972 fliI flagellum-specif 91.8 0.44 9.5E-06 55.5 7.7 87 197-291 162-265 (444)
461 PRK13765 ATP-dependent proteas 91.8 0.22 4.7E-06 61.3 5.6 78 168-256 26-104 (637)
462 PRK00300 gmk guanylate kinase; 91.8 0.12 2.7E-06 54.5 3.0 26 197-222 5-30 (205)
463 PF01078 Mg_chelatase: Magnesi 91.8 0.19 4.2E-06 52.3 4.3 43 172-219 2-44 (206)
464 PRK09563 rbgA GTPase YlqF; Rev 91.8 1.3 2.8E-05 49.5 11.3 24 197-220 121-144 (287)
465 PRK13768 GTPase; Provisional 91.7 0.23 4.9E-06 54.4 5.1 28 197-224 2-29 (253)
466 PRK08927 fliI flagellum-specif 91.7 0.32 6.8E-06 56.8 6.5 27 196-222 157-183 (442)
467 PRK08149 ATP synthase SpaL; Va 91.7 0.31 6.8E-06 56.8 6.4 89 196-292 150-255 (428)
468 KOG2123 Uncharacterized conser 91.7 0.012 2.6E-07 62.3 -4.5 43 777-819 59-103 (388)
469 COG0542 clpA ATP-binding subun 91.7 0.23 4.9E-06 61.5 5.5 153 172-346 169-346 (786)
470 PRK15453 phosphoribulokinase; 91.6 0.26 5.5E-06 53.9 5.2 28 195-222 3-30 (290)
471 PRK09519 recA DNA recombinatio 91.6 0.73 1.6E-05 57.6 9.7 49 183-232 46-95 (790)
472 COG0488 Uup ATPase components 91.5 0.46 9.9E-06 57.3 7.8 57 270-332 163-225 (530)
473 PRK10078 ribose 1,5-bisphospho 91.5 0.12 2.6E-06 53.8 2.5 24 198-221 3-26 (186)
474 TIGR00764 lon_rel lon-related 91.5 0.26 5.7E-06 60.7 5.9 59 171-234 16-75 (608)
475 TIGR02524 dot_icm_DotB Dot/Icm 91.5 0.31 6.8E-06 55.9 6.1 95 197-297 134-231 (358)
476 PLN02318 phosphoribulokinase/u 91.5 0.2 4.3E-06 60.0 4.5 27 195-221 63-89 (656)
477 PF08298 AAA_PrkA: PrkA AAA do 91.5 0.25 5.5E-06 55.4 5.1 53 172-224 60-115 (358)
478 COG0194 Gmk Guanylate kinase [ 91.4 0.19 4.2E-06 50.9 3.7 25 197-221 4-28 (191)
479 COG3854 SpoIIIAA ncharacterize 91.4 0.51 1.1E-05 49.2 6.7 112 195-314 135-251 (308)
480 cd01983 Fer4_NifH The Fer4_Nif 91.3 0.24 5.1E-06 44.7 4.1 25 199-223 1-25 (99)
481 COG1703 ArgK Putative periplas 91.3 0.45 9.8E-06 51.7 6.6 54 184-239 39-92 (323)
482 cd03116 MobB Molybdenum is an 91.3 0.3 6.5E-06 49.2 5.1 27 198-224 2-28 (159)
483 cd01125 repA Hexameric Replica 91.3 0.96 2.1E-05 49.0 9.5 24 199-222 3-26 (239)
484 PRK13695 putative NTPase; Prov 91.3 0.23 4.9E-06 51.0 4.3 33 199-231 2-35 (174)
485 PF13504 LRR_7: Leucine rich r 91.2 0.11 2.3E-06 31.0 1.0 17 781-797 1-17 (17)
486 PLN02200 adenylate kinase fami 91.2 0.19 4.1E-06 54.2 3.8 26 196-221 42-67 (234)
487 PRK14738 gmk guanylate kinase; 91.2 0.15 3.3E-06 53.9 3.0 26 195-220 11-36 (206)
488 TIGR02902 spore_lonB ATP-depen 91.2 0.28 6.1E-06 59.6 5.7 49 170-221 62-110 (531)
489 KOG0743 AAA+-type ATPase [Post 91.2 2.1 4.5E-05 49.4 12.0 25 198-222 236-260 (457)
490 PLN02348 phosphoribulokinase 91.2 0.21 4.5E-06 57.2 4.1 29 195-223 47-75 (395)
491 TIGR00455 apsK adenylylsulfate 91.2 0.88 1.9E-05 47.1 8.7 28 195-222 16-43 (184)
492 PRK05342 clpX ATP-dependent pr 91.2 0.29 6.3E-06 57.2 5.5 52 174-225 72-136 (412)
493 cd01136 ATPase_flagellum-secre 91.2 0.42 9.1E-06 53.8 6.5 26 197-222 69-94 (326)
494 KOG0726 26S proteasome regulat 91.1 0.23 5.1E-06 53.1 4.2 55 171-225 183-247 (440)
495 TIGR02173 cyt_kin_arch cytidyl 91.1 0.17 3.7E-06 51.5 3.3 23 199-221 2-24 (171)
496 PF14532 Sigma54_activ_2: Sigm 91.1 0.12 2.6E-06 50.7 2.1 46 176-222 1-46 (138)
497 PRK09435 membrane ATPase/prote 91.1 0.52 1.1E-05 53.4 7.2 30 195-224 54-83 (332)
498 TIGR03878 thermo_KaiC_2 KaiC d 91.1 0.33 7.2E-06 53.3 5.6 38 195-232 34-71 (259)
499 TIGR03600 phage_DnaB phage rep 91.1 2.2 4.7E-05 50.6 12.9 71 175-254 174-245 (421)
500 PRK13657 cyclic beta-1,2-gluca 91.0 0.33 7.2E-06 60.3 6.3 24 197-220 361-384 (588)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.3e-143 Score=1392.34 Aligned_cols=982 Identities=35% Similarity=0.562 Sum_probs=826.7
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
+||||+|||++|++|||+||.++||+||+|++ ++||+.|+++|++||++|||||||||+|||+|+||||||++||+|++
T Consensus 17 ~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~-~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~ 95 (1153)
T PLN03210 17 PSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKE 95 (1153)
T ss_pred eeCCCcccccCHHHHHHHHHHHCCCeEEccCC-ccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeEEeeeccccccccccccchHHHHHHHhhcCChhHHHHHHHHHHHhhhccCCCCCCC-CChHHHHHHHHHHHh
Q 047103 81 ANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMVQKWRDELTETSHLAGHESTKF-RNDALLIDKIVEDVL 159 (1095)
Q Consensus 81 ~~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~~~~~~~w~~aL~~va~~~g~~~~~~-~~e~~~i~~iv~~v~ 159 (1095)
+.|++|+||||+|||||||+|+|+||+||++|+++ +..+++++||+||++||+++|| ++++ .+|+++|++||++|+
T Consensus 96 ~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~-~~~~~~~E~~~i~~Iv~~v~ 172 (1153)
T PLN03210 96 ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY-HSQNWPNEAKMIEEIANDVL 172 (1153)
T ss_pred hcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce-ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999874 4678999999999999999999 7776 489999999999999
Q ss_pred hcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEec--ccc
Q 047103 160 KNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADV--RRN 237 (1095)
Q Consensus 160 ~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v--~~~ 237 (1095)
+++ ..+++.+.+++|||++++++|..+|..+. +++++||||||||+||||||+++|+++..+|++.+|+..+ +..
T Consensus 173 ~~l--~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 173 GKL--NLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred Hhh--ccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 999 77788888999999999999999998766 7899999999999999999999999999999999998642 111
Q ss_pred ---cCC-----CCCHHHHHHHHHHHhc-CCCccccCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCE
Q 047103 238 ---SGT-----GGGLEHLQKQILSTIL-SEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 238 ---~~~-----~~~l~~l~~~ll~~l~-~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsr 308 (1095)
... ......++++++.++. ....... ....++++|++||+||||||||+..+|+.+.+...|+++||+
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcE
Confidence 100 0113456777777743 2222221 124588999999999999999999999999998899999999
Q ss_pred EEEEeCchHHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc
Q 047103 309 IIITTRDKRVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH 388 (1095)
Q Consensus 309 IIiTTR~~~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~ 388 (1095)
||||||+++++..++++++|+|+.|+++|||+||+++||++..+++++++++++|+++|+|+|||++++|+.|++++..+
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 99999999999988889999999999999999999999998888888999999999999999999999999999876543
Q ss_pred ----------------------ccCCCCH-HHHHHhhhhhcccCCCCHHHHHHHhhccC-CCc--cceeccCCceeEeCC
Q 047103 389 ----------------------CFNDLTF-EAKNIFLDIACFFEGEDKDFVMRVLDDFV-SPE--LDVLIDKSLVTILDN 442 (1095)
Q Consensus 389 ----------------------sy~~L~~-~~k~~fl~~a~f~~~~~~~~v~~~l~~~~-~~~--l~~L~~~sLi~~~~~ 442 (1095)
||++|++ .+|.||++|||||.+.+.+.+..+++.++ .++ ++.|+++|||++..+
T Consensus 407 W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~ 486 (1153)
T PLN03210 407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486 (1153)
T ss_pred HHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCC
Confidence 9999976 59999999999999999999999999887 444 999999999999999
Q ss_pred EEEeeHHHHHHHHHHHhhccccCCCCcccccccccccceeccccccceeeeeecccCCCccccccccccccCCccceeee
Q 047103 443 RLQMHDLLQEMGREIVRKESNEEPGKRSRLWDHRDVSRVLKYNKGTDKIKGIFLDLSNKTDIHLTCGAFKNMPNLRLLKF 522 (1095)
Q Consensus 443 ~~~mHdll~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~~~~~~~v~~i~ldls~~~~~~i~~~~f~~m~~Lr~L~l 522 (1095)
+++|||++|+||++|+++++ .+|++|+|+|+++||++++..++|++.+++|++|++....+.+...+|.+|++|++|++
T Consensus 487 ~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 487 IVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred eEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 99999999999999999997 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC--------------------------CCCCcceeecccC
Q 047103 523 YVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE--------------------------DKAPKLKYIDLNH 576 (1095)
Q Consensus 523 ~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--------------------------~~l~~L~~L~Ls~ 576 (1095)
+.+.+.. ......+++.++.++|.+||+|+|.+|+++.+ ..+++|+.|+|++
T Consensus 566 ~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 566 YTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 8765431 12234678889999999999999999887655 4678899999999
Q ss_pred CCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCcc
Q 047103 577 SSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPR 655 (1095)
Q Consensus 577 n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~ 655 (1095)
|..++.+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|+.++.+|..+ ++++|+ +.+++|..+..+|.
T Consensus 644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 9888999999999999999999999999999999999999999999999999999877 599999 99999999999999
Q ss_pred ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCC-------ccccccCCCCCCCEEEccCcccccccccccccc
Q 047103 656 ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLK-------SLSTNICKLKSLRSLHLAFCEQLGKEASNIKEL 728 (1095)
Q Consensus 656 ~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~-------~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~l 728 (1095)
...+|+.|+|++|.++.+|..+ .+++|+.|++.++.... ..|......++|+.|+|++|...+ .+
T Consensus 723 ~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-------~l 794 (1153)
T PLN03210 723 ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-------EL 794 (1153)
T ss_pred ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-------cc
Confidence 9999999999999999999876 68899999998754321 111122345789999999986554 67
Q ss_pred CccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCE
Q 047103 729 PSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKW 808 (1095)
Q Consensus 729 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~ 808 (1095)
|.+++++++|+.|+|++|..++.+|..+ ++++|+.|+++++..+.......++|+.|+|++|.++.+|.++..+++|+.
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 8889999999999999999999999876 789999998877544333223357899999999999999999999999999
Q ss_pred EeccCCCCcccCCCCCC---CccceeecccCccCcccCC--CCcc---------------hhhhhhhhhhhhhhhccccc
Q 047103 809 LHLFDCIMLQSSLPELP---PHLVMLDARNCKRLQSLPE--LPSC---------------LEALDASVVETLSNHTSESN 868 (1095)
Q Consensus 809 L~L~~c~~l~~~lp~l~---~sL~~L~l~~c~~L~~lp~--~~~~---------------l~~l~~~c~~~L~~~~~~~~ 868 (1095)
|+|++|+.+.. +|..+ ++|+.|++.+|++|+.++. .|.. ....+.+|++ |.+.+.
T Consensus 874 L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~-L~~~a~--- 948 (1153)
T PLN03210 874 LDMNGCNNLQR-VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFN-LDQEAL--- 948 (1153)
T ss_pred EECCCCCCcCc-cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccC-CCchhh---
Confidence 99999999988 66543 6788889999999987652 2211 1223566766 555441
Q ss_pred cccCCcccccCCCCceeeecCCCCCCCCccccCCCCeeE-EecCCCCCCCccceEEEEEEEeeCCCCC-CCceEEEEEEE
Q 047103 869 MFLSPFIFEFDKPRGISFCLPGSEIPELFSNRSLGSSIT-IQLPHRCGNKFFIGFAINVVIEIDSDHD-NTSCVFRVGCK 946 (1095)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~~i~-i~lp~~~~~~~~~gf~~c~v~~~~~~~~-~~~~~~~~~~~ 946 (1095)
++. ......+++||.++|+||.||+.|++++ |++|+.|++..|.||++|+|+++..... ...+.+.|.|+
T Consensus 949 -l~~-------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~ 1020 (1153)
T PLN03210 949 -LQQ-------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCR 1020 (1153)
T ss_pred -hcc-------cccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEE
Confidence 111 1112347899999999999999999998 9999999988899999999999854332 34678899999
Q ss_pred ECCCceEEEeecCCCccccCcEEEEEeccccccC---CCCC-CCCC--CcccceeEEEEEEEEEeccCCCCccEEEeeec
Q 047103 947 FGSNHQYFFELFDNAGFNSNHVMLGLYPCWNIGI---GLPD-GDNG--GHQAAAALSFDFLIQYWSDFGKGHHKVKCCGV 1020 (1095)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~v~~cG~ 1020 (1095)
|++.++..++ ...++|+|++|..+.++.+ .++. .++. ......+++++|.+.. ....++||+|||
T Consensus 1021 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~~~~cg~ 1091 (1153)
T PLN03210 1021 FIDRLGNHFD-----SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTN----KNSQLKLKGCGI 1091 (1153)
T ss_pred EECCCCCccc-----cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEec----CCCCeEEEeeeE
Confidence 9875443321 2356788877776543321 1121 1111 0111234445554331 123479999999
Q ss_pred eEEecCC
Q 047103 1021 SPVYANP 1027 (1095)
Q Consensus 1021 ~~~y~~~ 1027 (1095)
+++|..+
T Consensus 1092 ~~~~~~~ 1098 (1153)
T PLN03210 1092 RLSEDDS 1098 (1153)
T ss_pred EEeccCC
Confidence 9999543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-56 Score=545.95 Aligned_cols=594 Identities=24% Similarity=0.300 Sum_probs=385.9
Q ss_pred ccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH---HhcCCCceEEEEecccccCCCCCHHHHHHHHH
Q 047103 176 VGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ---FSGGFEGTCFVADVRRNSGTGGGLEHLQKQIL 252 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~---~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll 252 (1095)
||.+..++++.+.|..+. ..++||+||||+||||||+.++|+ +.++|+.++||.+.. . ++...++++|+
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk----~-f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK----E-FTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc----c-ccHHhHHHHHH
Confidence 999999999999998755 499999999999999999999994 679999999998543 3 88899999999
Q ss_pred HHhcCCCcccc---CCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHh-cCcceEE
Q 047103 253 STILSEKLEVA---GPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEK-FGVKKIY 328 (1095)
Q Consensus 253 ~~l~~~~~~~~---~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~ 328 (1095)
..++....... .......+.+.|+.||+||||||||+..+|+.+..++|....||||++|||++.|+.. +++...+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 98776443332 2355677899999999999999999999999999999998899999999999999998 8999999
Q ss_pred EccCCChhHHHHHHHHhhhcc-CCCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc-------------------
Q 047103 329 RVNGLQFDVALEQFCNYAFKE-NRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH------------------- 388 (1095)
Q Consensus 329 ~v~~L~~~ea~~Lf~~~af~~-~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~------------------- 388 (1095)
+++.|+.+|||+||++.||.. ....+.++++|++++++|+|+|||+.++|+.|+.|....
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 999999999999999999976 333355899999999999999999999999999887653
Q ss_pred -----------ccCCCCHHHHHHhhhhhcccCCCCH--HHHHHHhhccC--CC-------------ccceeccCCceeEe
Q 047103 389 -----------CFNDLTFEAKNIFLDIACFFEGEDK--DFVMRVLDDFV--SP-------------ELDVLIDKSLVTIL 440 (1095)
Q Consensus 389 -----------sy~~L~~~~k~~fl~~a~f~~~~~~--~~v~~~l~~~~--~~-------------~l~~L~~~sLi~~~ 440 (1095)
|||.|+++.|.||+|||.||+++.+ +.+...|.+.| .+ ++.+|+.++|+...
T Consensus 393 ~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~ 472 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEE 472 (889)
T ss_pred hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999955 55666666555 11 19999999999987
Q ss_pred C-----CEEEeeHHHHHHHHHHHhhccccCCCCcccccccccccceeccccccceeeeeecccCCCccccccccccccCC
Q 047103 441 D-----NRLQMHDLLQEMGREIVRKESNEEPGKRSRLWDHRDVSRVLKYNKGTDKIKGIFLDLSNKTDIHLTCGAFKNMP 515 (1095)
Q Consensus 441 ~-----~~~~mHdll~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~~~~~~~v~~i~ldls~~~~~~i~~~~f~~m~ 515 (1095)
. ..++|||+++|||.+++.+....+.. .. .....+... ..-.....
T Consensus 473 ~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~i---------v~~~~~~~~-----------------~~~~~~~~ 523 (889)
T KOG4658|consen 473 RDEGRKETVKMHDVVREMALWIASDFGKQEEN---QI---------VSDGVGLSE-----------------IPQVKSWN 523 (889)
T ss_pred ccccceeEEEeeHHHHHHHHHHhccccccccc---eE---------EECCcCccc-----------------cccccchh
Confidence 4 68999999999999999855432211 00 000000000 00011113
Q ss_pred ccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCC-------CCCCCCCCcceeecccCCCCccccCC-CC
Q 047103 516 NLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYP-------LKNEDKAPKLKYIDLNHSSNLTRIPE-PS 587 (1095)
Q Consensus 516 ~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-------l~~l~~l~~L~~L~Ls~n~~l~~~p~-~~ 587 (1095)
..|...+.+|.+..++..... | +|+.|-+.++. ...+..++.|++|||++|.....+|. ++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~----------~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSEN----------P-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred heeEEEEeccchhhccCCCCC----------C-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 345555555544333221100 0 23333222221 11134556666666666665666664 55
Q ss_pred CCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecC
Q 047103 588 ETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRH 667 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~ 667 (1095)
.+.+|++|+|++.. +..+|..+++|++|.+||+..+..+..+|.....|.+|+ +|.+..
T Consensus 593 ~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr--------------------~L~l~~ 651 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR--------------------VLRLPR 651 (889)
T ss_pred hhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc--------------------EEEeec
Confidence 56666666666533 345666666666666666666555555544444444444 444333
Q ss_pred CCCc---cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEec
Q 047103 668 TPIE---EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLM 744 (1095)
Q Consensus 668 n~i~---~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~ 744 (1095)
.... ..-..+.++.+|+.|....... .+-..+..++.|..+...-+.. + ......+.++..+.+|+.|.+.
T Consensus 652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~-~---~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 652 SALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE-G---CSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred cccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc-c---cccceeecccccccCcceEEEE
Confidence 3211 0111234455555555543222 1111122333333221111100 0 1223455667888899999999
Q ss_pred CCCCCCCCCcccCC------CccccccccCCC--cccCcccCCCCCCCeeeCCCCCCcc-cCcccCCCC----------C
Q 047103 745 GCTKLGSLPESLGN------LKALEFLSAAGI--IKIPRDIGCLSSLVELDLSRNNFES-LPSGISHLS----------R 805 (1095)
Q Consensus 745 ~~~~~~~lp~~l~~------L~~L~~L~l~~~--~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~L~----------~ 805 (1095)
+|............ +++|..+...++ ...+.+....++|+.|.+..+.... +.+....+. +
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK 805 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence 88876543322221 223333322222 2334445667899999999886553 222222222 2
Q ss_pred CCEE-eccCC---CCcccCCCCCCCccceeecccCccCcccCCC
Q 047103 806 LKWL-HLFDC---IMLQSSLPELPPHLVMLDARNCKRLQSLPEL 845 (1095)
Q Consensus 806 L~~L-~L~~c---~~l~~~lp~l~~sL~~L~l~~c~~L~~lp~~ 845 (1095)
+..+ .+.+. +.+.. .|-..+.|..+.+..||++..+|..
T Consensus 806 ~~~l~~~~~l~~l~~i~~-~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 806 LEGLRMLCSLGGLPQLYW-LPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cccceeeecCCCCceeEe-cccCccchhheehhcCcccccCccc
Confidence 3333 12222 22222 2222256888889999999888854
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=341.48 Aligned_cols=144 Identities=30% Similarity=0.499 Sum_probs=134.5
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
|||||+|||++|++|||++|+++||+||+|++++++|+.|.++|.+||++|+++|||||++||+|+|||+||++||+|+
T Consensus 31 ISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~- 109 (187)
T PLN03194 31 INHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK- 109 (187)
T ss_pred EeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCeEEeEEeeecccccccc-ccccchHHHHHHHhhcCChhHHHHHHHHHHHhhhccCCCCCC--CCChHHHHHHHHHH
Q 047103 81 ANDQIVIPVFYNVSPFSVRHQ-TGIFGDAFVKFGQQFREKPEMVQKWRDELTETSHLAGHESTK--FRNDALLIDKIVED 157 (1095)
Q Consensus 81 ~~~~~v~pvfy~v~ps~vr~q-~g~~~~~f~~~~~~~~~~~~~~~~w~~aL~~va~~~g~~~~~--~~~e~~~i~~iv~~ 157 (1095)
++|+||||+|+|+|||+| .|. ...+++++||+||++||+++|+ +.. +++|+++|++||+.
T Consensus 110 ---~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~-~~~~~~~~e~e~i~~iv~~ 172 (187)
T PLN03194 110 ---KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGL-TFDSLKGNWSEVVTMASDA 172 (187)
T ss_pred ---CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccc-cCCCCCCCHHHHHHHHHHH
Confidence 479999999999999997 443 2458999999999999999998 553 57899999999999
Q ss_pred Hhhcc
Q 047103 158 VLKNL 162 (1095)
Q Consensus 158 v~~~l 162 (1095)
|.++|
T Consensus 173 v~k~l 177 (187)
T PLN03194 173 VIKNL 177 (187)
T ss_pred HHHHH
Confidence 99988
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-34 Score=322.16 Aligned_cols=241 Identities=31% Similarity=0.426 Sum_probs=190.1
Q ss_pred chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH--HhcCCCceEEEEecccccCCCCCHHHHHHHHHHHh
Q 047103 178 LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ--FSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI 255 (1095)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~--~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l 255 (1095)
||.++++|.+.|.... ++.++|+|+||||+||||||+++|++ +..+|+.++|+..... .....+.+.|+.++
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccccccccccc
Confidence 6889999999998866 78999999999999999999999988 8899999999974432 45578889999988
Q ss_pred cCCCccc----cCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCc-ceEEEc
Q 047103 256 LSEKLEV----AGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGV-KKIYRV 330 (1095)
Q Consensus 256 ~~~~~~~----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-~~~~~v 330 (1095)
....... +.....+.+++.|.++++||||||||+...|+.+...++.+..||+||||||+..++..++. ...|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 7663322 22335677889999999999999999999999998888877889999999999999877654 679999
Q ss_pred cCCChhHHHHHHHHhhhccC-CCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc---------------------
Q 047103 331 NGLQFDVALEQFCNYAFKEN-RCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH--------------------- 388 (1095)
Q Consensus 331 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~--------------------- 388 (1095)
++|+.+||++||++.++... .......+.+++|+++|+|+|||++++|++|+.+....
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998765 33456678899999999999999999999995543211
Q ss_pred --------ccCCCCHHHHHHhhhhhcccCCCC--HHHHHHHhhccC
Q 047103 389 --------CFNDLTFEAKNIFLDIACFFEGED--KDFVMRVLDDFV 424 (1095)
Q Consensus 389 --------sy~~L~~~~k~~fl~~a~f~~~~~--~~~v~~~l~~~~ 424 (1095)
||+.|+++.|+||+++|+||.+.. .+.+..+|.+.|
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 999999999999999999999875 677888887654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.9e-27 Score=310.75 Aligned_cols=363 Identities=21% Similarity=0.274 Sum_probs=227.5
Q ss_pred cCCCCcccccccccccceeccccccceeeeeecccCCCccccccccccccCCccceeeecCCccc-ccccCCcceecCCC
Q 047103 464 EEPGKRSRLWDHRDVSRVLKYNKGTDKIKGIFLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFT-FIPIASSKVHLDQG 542 (1095)
Q Consensus 464 ~~~~~~srl~~~~~i~~~l~~~~~~~~v~~i~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~-~i~~~~~~~~~~~~ 542 (1095)
.+|.++.+.|+..+.+......+....-+...+|++.+......+.+|..+++|+.|++++|.++ .+|. +
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~---------~ 112 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD---------D 112 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCCh---------H
Confidence 35666667786554333332222222224556777777665566788999999999999999875 2332 2
Q ss_pred CCCCCCCcceEEcccCCCCCC---CCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcce
Q 047103 543 LDYLPKELRYLHWHQYPLKNE---DKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGN 618 (1095)
Q Consensus 543 l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 618 (1095)
+..-..+|++|++++|.+... ..+++|++|+|++|.+...+|. ++.+++|++|+|++|...+.+|..++++++|++
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 222224788888887766432 4567788888888877666664 777788888888887777777777888888888
Q ss_pred EeccCCCCCcccCCcccccccce-eeccCCcccCCCccc---cCCceEEEecCCCCc-cccCccCCCCCCcEEeccCCCC
Q 047103 619 LSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPRI---SGNVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYS 693 (1095)
Q Consensus 619 L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~---~~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~ 693 (1095)
|+|++|.....+|..++.+++|+ +.+.++.....+|.. ..+|++|++++|.+. .+|..++++++|+.|+|++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 88888777777777777777777 777776655556643 345677777777776 5677777777777777777777
Q ss_pred CCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccccc--------
Q 047103 694 LKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFL-------- 765 (1095)
Q Consensus 694 l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L-------- 765 (1095)
.+.+|..+.++++|++|++++|.+.+. +|..+.++++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGE-------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccC-------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 777777777777777777777766553 33334444555555555555544444444445555544
Q ss_pred ----------------ccCCC---cccCcccCCCCCCCeeeCCCCCCc-ccCcccCCCCCCCEEeccCCCCcccCCCCC-
Q 047103 766 ----------------SAAGI---IKIPRDIGCLSSLVELDLSRNNFE-SLPSGISHLSRLKWLHLFDCIMLQSSLPEL- 824 (1095)
Q Consensus 766 ----------------~l~~~---~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l- 824 (1095)
++++. ..+|..+..+++|+.|++++|++. .+|..+..+++|+.|+|++|+.... +|..
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~p~~~ 424 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LPSEF 424 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-CChhH
Confidence 43331 123444444445555555555444 3444555556666666666654433 3331
Q ss_pred --CCccceeecccCccCcccC
Q 047103 825 --PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 825 --~~sL~~L~l~~c~~L~~lp 843 (1095)
.++|+.|++++|.....+|
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred hcCCCCCEEECcCCcccCccC
Confidence 2456666666665444333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=292.57 Aligned_cols=338 Identities=23% Similarity=0.266 Sum_probs=209.5
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCC-----CCCCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLK-----NEDKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-----~l~~l~~L 569 (1095)
.+|++.+......+..|..+++|+.|++++|.+.. .++..+..++ +|++|++++|.+. .+..+++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--------KIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccc--------cCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCc
Confidence 45666665555556677788888888888776542 1222333333 6777777777643 23667777
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCC
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSEC 647 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c 647 (1095)
+.|+|++|.+...+|. ++.+++|++|+|++|...+.+|..++++++|++|+|++|.....+|..+..+++|+ +.+++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 8888877777666664 67777888888887777777777777788888888877776667777777777777 777776
Q ss_pred cccCCCccc---cCCceEEEecCCCCc-cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 648 VNLSEFPRI---SGNVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 648 ~~L~~~p~~---~~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
.....+|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 655555543 346677777777776 5666677777777888877777777777777777777777777776653332
Q ss_pred cc-----------------cccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCC---cccCcccCCCCCC
Q 047103 724 NI-----------------KELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGI---IKIPRDIGCLSSL 783 (1095)
Q Consensus 724 ~i-----------------~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~---~~lp~~l~~l~~L 783 (1095)
.+ ..+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+++++ ..+|..+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 11 123334444555555555555555555555555555555544332 1234444455555
Q ss_pred CeeeCCCCCCc-ccCcccCCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCccCcccC
Q 047103 784 VELDLSRNNFE-SLPSGISHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 784 ~~L~Ls~n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L~~lp 843 (1095)
+.|+|++|.+. .+|.. ...++|+.|++++|+.... +|.. .++|+.|++++|.....+|
T Consensus 455 ~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 455 QMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred cEEECcCceeeeecCcc-cccccceEEECcCCccCCc-cChhhhhhhccCEEECcCCcceeeCC
Confidence 55555555554 23322 2335556666665544333 3332 2456666666665554554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=242.66 Aligned_cols=287 Identities=28% Similarity=0.349 Sum_probs=216.6
Q ss_pred CCCCCCCCcceEEcccCCCCC------CCCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCcccc-ccccCCC
Q 047103 542 GLDYLPKELRYLHWHQYPLKN------EDKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIP-SYIQNFN 614 (1095)
Q Consensus 542 ~l~~l~~~Lr~L~l~~~~l~~------l~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~ 614 (1095)
.+..+| .||.+....|.++. +-.+..|..||||+|++......+....|+-+|+|++|++ ..+| +-+-+|+
T Consensus 73 ELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLT 150 (1255)
T ss_pred hhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhH
Confidence 344555 67777777776543 3567888899999986444333588888999999988765 4455 4556888
Q ss_pred CcceEeccCCCCCcccCCcccccccce-eeccCCcc----cCCCccccCCceEEEecCCCCc--cccCccCCCCCCcEEe
Q 047103 615 NLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVN----LSEFPRISGNVVELKLRHTPIE--EVPSSIDCLPDLETLE 687 (1095)
Q Consensus 615 ~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~----L~~~p~~~~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~ 687 (1095)
.|-+|||++ +.+..+|+.+..|..|+ |.+++.+- |..+|. +.+|+.|++++++-+ .+|.++..+.+|..+|
T Consensus 151 DLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 151 DLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 999999987 56788888888888888 77777652 334443 456788888888755 7899999999999999
Q ss_pred ccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccccccc
Q 047103 688 MSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSA 767 (1095)
Q Consensus 688 Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l 767 (1095)
||.| .+..+|+.+.++++|+.|+||+|.+. ++....+...+|++|+|+.|++ ..+|..++.|+.|+.|..
T Consensus 229 lS~N-~Lp~vPecly~l~~LrrLNLS~N~it--------eL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 229 LSEN-NLPIVPECLYKLRNLRRLNLSGNKIT--------ELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred cccc-CCCcchHHHhhhhhhheeccCcCcee--------eeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHh
Confidence 9875 46788888899999999999987654 4444556677888888888764 467888888888888855
Q ss_pred CC----CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCC---CCCccceeecccCccCc
Q 047103 768 AG----IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPE---LPPHLVMLDARNCKRLQ 840 (1095)
Q Consensus 768 ~~----~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~---l~~sL~~L~l~~c~~L~ 840 (1095)
++ ...+|+.++.+.+|+.+..++|+++-+|.++..|..|+.|.|+.|+.++ +|+ +.+.|+.||+.+++.|.
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT--LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT--LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee--chhhhhhcCCcceeeccCCcCcc
Confidence 54 2358888888888888888888888888888888888888888776554 555 45788888888888887
Q ss_pred ccCC
Q 047103 841 SLPE 844 (1095)
Q Consensus 841 ~lp~ 844 (1095)
.-|.
T Consensus 377 MPPK 380 (1255)
T KOG0444|consen 377 MPPK 380 (1255)
T ss_pred CCCC
Confidence 6654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-23 Score=229.31 Aligned_cols=324 Identities=22% Similarity=0.205 Sum_probs=211.7
Q ss_pred eecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCc
Q 047103 494 IFLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPK 568 (1095)
Q Consensus 494 i~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~ 568 (1095)
-.+|+++|...++....|.+++||+.+++..|.++.+|.- ......|..|++.+|.+.+. +.++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f----------~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF----------GHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc----------cccccceeEEeeeccccccccHHHHHhHhh
Confidence 3589999999999999999999999999999999988863 22233577777777776554 66788
Q ss_pred ceeecccCCCCccc-cCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccC
Q 047103 569 LKYIDLNHSSNLTR-IPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSE 646 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~-~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~ 646 (1095)
|+.||||.|.+... .|.|..-.+|++|+|++|.+...-...|..|.+|.+|.|+.|.....-+..|.+|+.|+ |.+..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 88888888844332 23477777888888888887777667788888888888887544433334444577777 54433
Q ss_pred CcccCCC--c--cccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccc
Q 047103 647 CVNLSEF--P--RISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKE 721 (1095)
Q Consensus 647 c~~L~~~--p--~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~ 721 (1095)
+.++.. . ..+.+|+.|.|..|.|..+.++ |..+.++++|+|+.|+....-..++.+|++|+.|+||+|.+....
T Consensus 231 -N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 231 -NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred -cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 222211 1 2334567777777777777665 566777777777777666655666677777777777776554421
Q ss_pred cccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCc-ccCCCCCCCeeeCCCCCCc-ccC
Q 047103 722 ASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPR-DIGCLSSLVELDLSRNNFE-SLP 797 (1095)
Q Consensus 722 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~-~l~~l~~L~~L~Ls~n~l~-~lp 797 (1095)
+++....++|+.|+|++|.+...-+.+|..|..|+.|+++. +..+.+ .+..+++|++|||++|.++ .+.
T Consensus 310 -------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 310 -------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred -------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 23455667777777777777666666666677777665554 223332 3455666666666666655 121
Q ss_pred ---cccCCCCCCCEEeccCCCCcccCCCC----CCCccceeecccCc
Q 047103 798 ---SGISHLSRLKWLHLFDCIMLQSSLPE----LPPHLVMLDARNCK 837 (1095)
Q Consensus 798 ---~~l~~L~~L~~L~L~~c~~l~~~lp~----l~~sL~~L~l~~c~ 837 (1095)
..+..|++|+.|.+.+|+ +++ +|. -.++|+.|++.+|.
T Consensus 383 Daa~~f~gl~~LrkL~l~gNq-lk~-I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQ-LKS-IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhccchhhhheeecCce-eee-cchhhhccCcccceecCCCCc
Confidence 234556666666666663 333 332 12566666666665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.5e-22 Score=225.76 Aligned_cols=290 Identities=21% Similarity=0.277 Sum_probs=229.1
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC----CCCCcceeecccCCCCccccCC-
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE----DKAPKLKYIDLNHSSNLTRIPE- 585 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l----~~l~~L~~L~Ls~n~~l~~~p~- 585 (1095)
++.++.||.+.+..|++.. .-+|.++..+- .|..|+++.|.++.. ...+++-+|+||+|++ ..+|.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKn-------sGiP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~ 144 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKN-------SGIPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNS 144 (1255)
T ss_pred hccchhhHHHhhhcccccc-------CCCCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCch
Confidence 4556667777777666531 11233344443 778888888877653 5678899999999954 45564
Q ss_pred -CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCc-ccCCCccc---cCC
Q 047103 586 -PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECV-NLSEFPRI---SGN 659 (1095)
Q Consensus 586 -~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~-~L~~~p~~---~~~ 659 (1095)
|-+++.|-+|||++|. +..+|+.+..|.+|++|+|++|.....--..+..+++|+ |.+++-. -+..+|.. +.|
T Consensus 145 lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 7899999999999865 677888899999999999999875432112222367777 6666654 34467754 457
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
|..++|+.|++..+|..+.++++|+.|+||+|.+. .+....+...+|++|++|.|++ ..+|..+..|++|+
T Consensus 224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL--------t~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL--------TVLPDAVCKLTKLT 294 (1255)
T ss_pred hhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh--------ccchHHHhhhHHHH
Confidence 88999999999999999999999999999998754 4555567788999999999754 46899999999999
Q ss_pred EEEecCCCCC-CCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 740 ELQLMGCTKL-GSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 740 ~L~L~~~~~~-~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
.|.+.+|++. .-+|+.++.|..|+.+...+ +.-+|+.++.+..|+.|.|+.|.+.++|..|.-|+.|+.|++..|++
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 9999999876 44899999999999995544 56689999999999999999999999999999999999999999999
Q ss_pred ccc
Q 047103 817 LQS 819 (1095)
Q Consensus 817 l~~ 819 (1095)
+--
T Consensus 375 LVM 377 (1255)
T KOG0444|consen 375 LVM 377 (1255)
T ss_pred ccC
Confidence 864
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.3e-19 Score=237.47 Aligned_cols=280 Identities=30% Similarity=0.453 Sum_probs=221.2
Q ss_pred CCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCC-C---CCCCCCCcceeecccCCCCccccCC-CCC
Q 047103 514 MPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYP-L---KNEDKAPKLKYIDLNHSSNLTRIPE-PSE 588 (1095)
Q Consensus 514 m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l---~~l~~l~~L~~L~Ls~n~~l~~~p~-~~~ 588 (1095)
..+|+.|++.+|.+..++ .++..++ .|++|+++++. + ..+..+++|+.|+|++|..+..+|. +..
T Consensus 610 ~~~L~~L~L~~s~l~~L~---------~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLW---------DGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred ccCCcEEECcCccccccc---------cccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc
Confidence 455666666655554333 2333444 79999998753 3 3456789999999999988888886 799
Q ss_pred CccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCccc--cCCceEEEe
Q 047103 589 TPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPRI--SGNVVELKL 665 (1095)
Q Consensus 589 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~--~~~L~~L~L 665 (1095)
+++|+.|++++|..+..+|..+ ++++|++|+|++|..++.+|... .+|+ +.+.+ +.+..+|.. ..+|.+|.+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLDLDE-TAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCeeecCC-Cccccccccccccccccccc
Confidence 9999999999999999999876 89999999999999999888653 4556 55544 447777764 357788888
Q ss_pred cCCCCccccCc--------cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCC
Q 047103 666 RHTPIEEVPSS--------IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737 (1095)
Q Consensus 666 ~~n~i~~lp~~--------i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~ 737 (1095)
.++....++.. ....++|+.|+|++|.....+|..++++++|+.|+|++|..++ .+|..+ ++++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-------~LP~~~-~L~s 826 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-------TLPTGI-NLES 826 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-------eeCCCC-Cccc
Confidence 77544333221 2345789999999999999999999999999999999997666 455544 6899
Q ss_pred CCEEEecCCCCCCCCCcccCCCccccccccC--CCcccCcccCCCCCCCeeeCCC-CCCcccCcccCCCCCCCEEeccCC
Q 047103 738 LRELQLMGCTKLGSLPESLGNLKALEFLSAA--GIIKIPRDIGCLSSLVELDLSR-NNFESLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~--~~~~lp~~l~~l~~L~~L~Ls~-n~l~~lp~~l~~L~~L~~L~L~~c 814 (1095)
|+.|+|++|..+..+|... ++|+.|+++ ++..+|.++..+++|+.|+|++ +++..+|..+..+++|+.|++++|
T Consensus 827 L~~L~Ls~c~~L~~~p~~~---~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDIS---TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cCEEECCCCCccccccccc---cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 9999999999988888654 456666554 4778999999999999999999 478899999999999999999999
Q ss_pred CCccc
Q 047103 815 IMLQS 819 (1095)
Q Consensus 815 ~~l~~ 819 (1095)
..+..
T Consensus 904 ~~L~~ 908 (1153)
T PLN03210 904 GALTE 908 (1153)
T ss_pred ccccc
Confidence 98875
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.4e-22 Score=216.82 Aligned_cols=216 Identities=23% Similarity=0.287 Sum_probs=129.4
Q ss_pred ccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC----CCCCcceeecccCCCCccccCC
Q 047103 510 AFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE----DKAPKLKYIDLNHSSNLTRIPE 585 (1095)
Q Consensus 510 ~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l----~~l~~L~~L~Ls~n~~l~~~p~ 585 (1095)
+..++..++.|+.++|++..+|. .+..++ +++.|+.+.+.+..+ ..+-.|..|+..+|++.+..++
T Consensus 86 aig~l~~l~~l~vs~n~ls~lp~---------~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSELPE---------QIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred HHHHHHHHHHhhcccchHhhccH---------HHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH
Confidence 34444555555555555444443 222222 566677777665554 5566777777777777666667
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccC--CceEE
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISG--NVVEL 663 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~--~L~~L 663 (1095)
+..+..|..|++.+|......|..+. ++.|++||... +.++.+|+.++.+.+|.+....-+++..+|++.+ .|.+|
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence 77777788888877765544444443 77888887766 5677778878878887744444456666665544 24556
Q ss_pred EecCCCCccccCccC-CCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEE
Q 047103 664 KLRHTPIEEVPSSID-CLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQ 742 (1095)
Q Consensus 664 ~L~~n~i~~lp~~i~-~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~ 742 (1095)
+++.|.|+.+|.... ++++|..|||.+|+ ++..|..++-+.+|..|++|+|.+ ..+|.+++++ .|+.|.
T Consensus 234 h~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~i--------s~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 234 HVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDI--------SSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCcc--------ccCCcccccc-eeeehh
Confidence 666666665555543 55666666666543 445555555566666666655432 2355555555 555555
Q ss_pred ecCCC
Q 047103 743 LMGCT 747 (1095)
Q Consensus 743 L~~~~ 747 (1095)
+.||+
T Consensus 304 leGNP 308 (565)
T KOG0472|consen 304 LEGNP 308 (565)
T ss_pred hcCCc
Confidence 55554
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.6e-21 Score=215.40 Aligned_cols=259 Identities=19% Similarity=0.125 Sum_probs=175.5
Q ss_pred CCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-ee
Q 047103 566 APKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-IN 643 (1095)
Q Consensus 566 l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~ 643 (1095)
-.+|++|+|++|.+...-. .|..+.+|..|.|+.|.+....+.+|.+|++|+.|+|..|..-..--..|..|++|+ +.
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 3566777777766554332 366666777777777666555556666677777777766432221122344555555 33
Q ss_pred ccCCcccCCCc----cccCCceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 644 CSECVNLSEFP----RISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 644 l~~c~~L~~~p----~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
+.. +.+..+- -.+.++++|+|..|++..+.. ++.+|+.|+.|+|+.|.+...-+++....++|+.|+|++|.+.
T Consensus 252 lqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 332 2222222 234567888888888887765 4678888999999988888777777788888999999887654
Q ss_pred ccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCc------ccCcccCCCCCCCeeeCCCCC
Q 047103 719 GKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGII------KIPRDIGCLSSLVELDLSRNN 792 (1095)
Q Consensus 719 ~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~------~lp~~l~~l~~L~~L~Ls~n~ 792 (1095)
... +.++..|..|+.|+|+.|.+...--..|..+++|+.|++.+.. .-...+..+++|+.|.|.+|+
T Consensus 331 ~l~-------~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 331 RLD-------EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred cCC-------hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 421 2356678888888898888777666678888888888777632 233446778999999999999
Q ss_pred CcccCc-ccCCCCCCCEEeccCCCCcccCCCCCC--Cccceeec
Q 047103 793 FESLPS-GISHLSRLKWLHLFDCIMLQSSLPELP--PHLVMLDA 833 (1095)
Q Consensus 793 l~~lp~-~l~~L~~L~~L~L~~c~~l~~~lp~l~--~sL~~L~l 833 (1095)
+..+|. .+..|++|++|+|.+|..... -|..+ -.|+.|.+
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSI-q~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASI-QPNAFEPMELKELVM 446 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceee-cccccccchhhhhhh
Confidence 998886 678899999999998876544 33322 34555544
No 13
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=5.1e-21 Score=189.63 Aligned_cols=131 Identities=31% Similarity=0.516 Sum_probs=117.2
Q ss_pred CCcccccccCcchHHHHHHHhhC--CCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhc
Q 047103 1 METTGEDTRVIFISHLYAALCRK--KIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDC 78 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~--gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~ 78 (1095)
|||+|.|++..|++||..+|++. |+++|++++|+.+|..+..++.+||++||++|+|||++|++|.||+.||..++++
T Consensus 3 isy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~ 82 (141)
T PF01582_consen 3 ISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALER 82 (141)
T ss_dssp EEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhh
Confidence 58999777899999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC--CeEEeEEeeecccccc-ccccccchHHHHHHHhhcCC--hhHHHHHHHHHH
Q 047103 79 KKAND--QIVIPVFYNVSPFSVR-HQTGIFGDAFVKFGQQFREK--PEMVQKWRDELT 131 (1095)
Q Consensus 79 ~~~~~--~~v~pvfy~v~ps~vr-~q~g~~~~~f~~~~~~~~~~--~~~~~~w~~aL~ 131 (1095)
..+.+ ++|+||||+|.|++|+ +|.+.|+.+|..+..-.+.. ..+...|++++.
T Consensus 83 ~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 83 LLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred ccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 87655 8999999999999999 79999999998887655443 578899998875
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=1.2e-19 Score=194.53 Aligned_cols=285 Identities=23% Similarity=0.297 Sum_probs=200.9
Q ss_pred ccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcceeecccCCCCccc
Q 047103 508 CGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKLKYIDLNHSSNLTR 582 (1095)
Q Consensus 508 ~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L~~L~Ls~n~~l~~ 582 (1095)
|..++.|.+|..|++.+|++..+|.-. .- ..|..||...|.++-+ +++++|.+|||..|+ +++
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~----------gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke 266 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFP----------GC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKE 266 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCC----------cc-HHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-ccc
Confidence 334455555555555555554444210 00 1466677777766554 688999999999985 555
Q ss_pred cCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcc---------------------------
Q 047103 583 IPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNI--------------------------- 634 (1095)
Q Consensus 583 ~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i--------------------------- 634 (1095)
.|+ ++.+.+|++||+++|. +..+|.++++| +|+.|-+.||..-+ +-..+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred CchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 665 8888999999998865 45678889999 99999998875321 10000
Q ss_pred ---------------cccccce-eeccCCcccCCCcccc------CCceEEEecCCCCccccCccCCCCCCcEEeccCCC
Q 047103 635 ---------------HFVSSIK-INCSECVNLSEFPRIS------GNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCY 692 (1095)
Q Consensus 635 ---------------~~l~~L~-l~l~~c~~L~~~p~~~------~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~ 692 (1095)
..+.+.+ +.++ -..++.+|... .-++..++++|++.++|..+..++.+.+.-+..++
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s-~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVS-DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhccc-ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 0111111 1111 11222333211 12467788888888888887777777776666667
Q ss_pred CCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccccc--ccCCC
Q 047103 693 SLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFL--SAAGI 770 (1095)
Q Consensus 693 ~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L--~l~~~ 770 (1095)
..+.+|..++.+++|..|+|++|.+ ..+|..++.+..|+.|+++.|. ...+|..+-.+..|+.+ +.+.+
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~L--------n~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLL--------NDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred ccccchHHHHhhhcceeeecccchh--------hhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccc
Confidence 7888999999999999999998643 3688889999999999999985 34567666666667766 33457
Q ss_pred cccCcc-cCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCc
Q 047103 771 IKIPRD-IGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 771 ~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l 817 (1095)
+.++.+ +.++.+|.+|||.+|.+..+|+.++++++|++|.|++|+.-
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 788776 99999999999999999999999999999999999999864
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=2.7e-18 Score=201.73 Aligned_cols=331 Identities=23% Similarity=0.261 Sum_probs=206.4
Q ss_pred eeeeecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC----CCC
Q 047103 491 IKGIFLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE----DKA 566 (1095)
Q Consensus 491 v~~i~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l----~~l 566 (1095)
++-..+|++++....++ .....+..|+.|.++.|.|...|..... -+.|.+|.+.++.+.++ ..+
T Consensus 45 v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~----------~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIRSVPSSCSN----------MRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred eeeEEeeccccccccCC-chhhhHHHHhhcccchhhHhhCchhhhh----------hhcchhheeccchhhcCchhHHhh
Confidence 34445566655444332 2344555666666666665544421111 13677777777776655 467
Q ss_pred CcceeecccCCCCccccCCCCCCccccEeeccCC-------------------ccCccccccccCCCCcceEeccCCCCC
Q 047103 567 PKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNC-------------------TGLALIPSYIQNFNNLGNLSLEGCESL 627 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~-------------------~~l~~lp~~i~~L~~L~~L~L~~c~~l 627 (1095)
++|++|++++|.+....+.+..++.++.+..++| .....++..+.++.+ .|+|++|...
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 7888888888865544333444444444444444 334444444455544 4777765544
Q ss_pred cccCCcccccccce---------------------eeccCCcccCCCcc-ccCCceEEEecCCCCccccCccCCCCCCcE
Q 047103 628 RCFPQNIHFVSSIK---------------------INCSECVNLSEFPR-ISGNVVELKLRHTPIEEVPSSIDCLPDLET 685 (1095)
Q Consensus 628 ~~lp~~i~~l~~L~---------------------l~l~~c~~L~~~p~-~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~ 685 (1095)
. + .+..+..|+ +....|...+..+. ...+|+.++++.|.++.+|++++.+.+|+.
T Consensus 192 ~-~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 192 V-L--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEA 268 (1081)
T ss_pred h-h--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceE
Confidence 1 1 111222222 22222222222221 234788999999999999999999999999
Q ss_pred EeccCCCCC----------------------CccccccCCCCCCCEEEccCcccccccccc------------------c
Q 047103 686 LEMSNCYSL----------------------KSLSTNICKLKSLRSLHLAFCEQLGKEASN------------------I 725 (1095)
Q Consensus 686 L~Ls~~~~l----------------------~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~------------------i 725 (1095)
|+..+|.+. ..+|.....+++|++|+|..|.+... |.. +
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSL-PDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccccc-chHHHhhhhHHHHHHhhhhccc
Confidence 998887652 23556667788899999888765432 211 1
Q ss_pred cccC-------------------------ccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccC
Q 047103 726 KELP-------------------------SSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIG 778 (1095)
Q Consensus 726 ~~lp-------------------------~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~ 778 (1095)
..+| ..+.++++|+.|+|++|.+.......+.++..|+.|++++ +..+|..+.
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva 427 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA 427 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH
Confidence 1111 1234566788888887765544444567777777776665 566887788
Q ss_pred CCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCC-CC-CccceeecccCccC
Q 047103 779 CLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPE-LP-PHLVMLDARNCKRL 839 (1095)
Q Consensus 779 ~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~-l~-~sL~~L~l~~c~~L 839 (1095)
.++.|++|...+|++..+| .+..+++|+.+||+.|......+|. +| ++|++||+++|+.+
T Consensus 428 ~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 8888888888888888888 7888999999999988765554554 57 89999999999853
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.5e-16 Score=190.78 Aligned_cols=252 Identities=21% Similarity=0.229 Sum_probs=157.4
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCC-CCCcceeec
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNED-KAPKLKYID 573 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~-~l~~L~~L~ 573 (1095)
.+|++.+....+++... .+|+.|.+.+|+++.+|. +|++|++|++++|.++.+. ..++|+.|+
T Consensus 205 ~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~-------------lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~ 268 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA-------------LPPELRTLEVSGNQLTSLPVLPPGLLELS 268 (788)
T ss_pred EEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCC-------------CCCCCcEEEecCCccCcccCcccccceee
Confidence 45777776666655433 378889999988876653 2457888888888877764 346788888
Q ss_pred ccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCC
Q 047103 574 LNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSE 652 (1095)
Q Consensus 574 Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~ 652 (1095)
|++|.+ ..+|. ...+|+.|+|++|... .+|. .+++|+.|+|++| .+..+|.... +|+ +.+.+ +.+..
T Consensus 269 Ls~N~L-~~Lp~--lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~-N~L~~ 336 (788)
T PRK15387 269 IFSNPL-THLPA--LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN-QLASLPALPS---ELCKLWAYN-NQLTS 336 (788)
T ss_pred ccCCch-hhhhh--chhhcCEEECcCCccc-cccc---cccccceeECCCC-ccccCCCCcc---ccccccccc-Ccccc
Confidence 888753 34444 2356778888887543 4554 2467888888876 3444554322 233 33333 44555
Q ss_pred CccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccc
Q 047103 653 FPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSI 732 (1095)
Q Consensus 653 ~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l 732 (1095)
+|..+.+|+.|+|++|.|+.+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+.+ +|..
T Consensus 337 LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~--------LP~l- 400 (788)
T PRK15387 337 LPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS--------LPVL- 400 (788)
T ss_pred ccccccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC--------CCCc-
Confidence 666556666777777777666653 245566666665543 34542 2456666666654432 2221
Q ss_pred cCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEecc
Q 047103 733 ENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLF 812 (1095)
Q Consensus 733 ~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~ 812 (1095)
.++|+.|++++|.+. .+|.. +.+|+.|+|++|+|+.+|..+.++++|+.|+|+
T Consensus 401 --~s~L~~LdLS~N~Ls----------------------sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 401 --PSELKELMVSGNRLT----------------------SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred --ccCCCEEEccCCcCC----------------------CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 245666666666543 23321 245777888888888888888888888888888
Q ss_pred CCCCc
Q 047103 813 DCIML 817 (1095)
Q Consensus 813 ~c~~l 817 (1095)
+|+..
T Consensus 454 ~N~Ls 458 (788)
T PRK15387 454 GNPLS 458 (788)
T ss_pred CCCCC
Confidence 88754
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1e-15 Score=186.84 Aligned_cols=230 Identities=21% Similarity=0.256 Sum_probs=172.7
Q ss_pred cccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCC-CCcceeecc
Q 047103 496 LDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDK-APKLKYIDL 574 (1095)
Q Consensus 496 ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~-l~~L~~L~L 574 (1095)
++++.+....++. .+++|+.|++++|+|+.+|. +|..|+.|++.+|.+..+.. +.+|+.|+|
T Consensus 227 L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~-------------lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L 289 (788)
T PRK15387 227 LVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV-------------LPPGLLELSIFSNPLTHLPALPSGLCKLWI 289 (788)
T ss_pred EEccCCcCCCCCC----CCCCCcEEEecCCccCcccC-------------cccccceeeccCCchhhhhhchhhcCEEEC
Confidence 4555565555543 35899999999999987663 34589999999999887744 357999999
Q ss_pred cCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCC
Q 047103 575 NHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEF 653 (1095)
Q Consensus 575 s~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~ 653 (1095)
++|++ ..+|. .+++|+.|+|++|... .+|.. ..+|+.|++++|. +..+|.. ..+|+ |.+++ ++++.+
T Consensus 290 s~N~L-t~LP~--~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~-N~Ls~L 357 (788)
T PRK15387 290 FGNQL-TSLPV--LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSD-NQLASL 357 (788)
T ss_pred cCCcc-ccccc--cccccceeECCCCccc-cCCCC---cccccccccccCc-ccccccc---ccccceEecCC-CccCCC
Confidence 99965 45564 3578999999998655 45553 2468888999865 4567752 24677 67765 688899
Q ss_pred ccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcccc
Q 047103 654 PRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIE 733 (1095)
Q Consensus 654 p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~ 733 (1095)
|..+.+|+.|++++|.|+.+|.. .++|+.|+|++|.+. .+|.. .++|+.|++++|.+.+ +|..
T Consensus 358 P~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss--------IP~l-- 420 (788)
T PRK15387 358 PTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS--------LPML-- 420 (788)
T ss_pred CCCCcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC--------CCcc--
Confidence 99889999999999999999864 357999999998765 46653 4689999999987543 4432
Q ss_pred CCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc
Q 047103 734 NLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 734 ~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
..+|+.|++++|.+ ..+|..+..+++|+.|+|++|.|+
T Consensus 421 -~~~L~~L~Ls~NqL----------------------t~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 421 -PSGLLSLSVYRNQL----------------------TRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -hhhhhhhhhccCcc----------------------cccChHHhhccCCCeEECCCCCCC
Confidence 24577788887764 345666777889999999999988
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.63 E-value=5.4e-16 Score=153.81 Aligned_cols=132 Identities=33% Similarity=0.563 Sum_probs=113.0
Q ss_pred CCccc-ccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhcc
Q 047103 1 METTG-EDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCK 79 (1095)
Q Consensus 1 ~sfrg-~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~ 79 (1095)
|||++ +++++.|+.+|..+|.+.|+.+|.|+. ...|.... ++.+||++|++.|+|+|++|..|.||..|+..++++.
T Consensus 6 ISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~-~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~ 83 (140)
T smart00255 6 ISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF-EPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENA 83 (140)
T ss_pred EECCCCHHHHHHHHHHHHHHhhcCCcEEEecCc-ccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHH
Confidence 68999 678899999999999999999999987 44444444 9999999999999999999999999999999999987
Q ss_pred cc-CCCeEEeEEeeeccccccccccccchHHHHHHHhhcCChhHHHHHHHHHHHhhh
Q 047103 80 KA-NDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMVQKWRDELTETSH 135 (1095)
Q Consensus 80 ~~-~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~~~~~~~w~~aL~~va~ 135 (1095)
.+ ..+.|+||+|+..|+++..+.+.++.++..+..++.....+ +.|+.++..+++
T Consensus 84 ~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 84 LEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 54 56799999999999999999999999998875544444333 789998887653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=5e-15 Score=182.12 Aligned_cols=221 Identities=18% Similarity=0.287 Sum_probs=106.9
Q ss_pred CCcceEEcccCCCCCCC--CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCC
Q 047103 548 KELRYLHWHQYPLKNED--KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCE 625 (1095)
Q Consensus 548 ~~Lr~L~l~~~~l~~l~--~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 625 (1095)
..|+.|++++|.++.+. ...+|+.|+|++|.+. .+|. .-.++|+.|+|++|... .+|..+. ++|+.|+|++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCCh-hhhccccEEECcCCccC-cCChhHh--CCCCEEECcCC-
Confidence 34555555555554441 2245666666666433 3443 11235666777666543 4555443 35666777653
Q ss_pred CCcccCCcccccccce-eeccCCcccCCCccc-cCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCC
Q 047103 626 SLRCFPQNIHFVSSIK-INCSECVNLSEFPRI-SGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICK 703 (1095)
Q Consensus 626 ~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~-~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~ 703 (1095)
.+..+|..+. .+|+ |.+++| +++.+|.. ..+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+.
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~- 345 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-SLPASLP- 345 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccc-cCChhhc-
Confidence 3445554432 2344 333332 33333321 2245555555555555554332 45555555555433 2444332
Q ss_pred CCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCC
Q 047103 704 LKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSL 783 (1095)
Q Consensus 704 L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L 783 (1095)
++|+.|++++|.+. .+|..+ .++|+.|+|++|.+. .+|..+. .+|
T Consensus 346 -~sL~~L~Ls~N~L~--------~LP~~l--p~~L~~LdLs~N~Lt----------------------~LP~~l~--~sL 390 (754)
T PRK15370 346 -PELQVLDVSKNQIT--------VLPETL--PPTITTLDVSRNALT----------------------NLPENLP--AAL 390 (754)
T ss_pred -CcccEEECCCCCCC--------cCChhh--cCCcCEEECCCCcCC----------------------CCCHhHH--HHH
Confidence 45555555555432 122222 134555555555433 2232221 246
Q ss_pred CeeeCCCCCCcccCccc----CCCCCCCEEeccCCCC
Q 047103 784 VELDLSRNNFESLPSGI----SHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 784 ~~L~Ls~n~l~~lp~~l----~~L~~L~~L~L~~c~~ 816 (1095)
+.|++++|+|+.+|..+ ..++++..|+|.+|+.
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 66666666666655433 2345566666666654
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=2.3e-16 Score=185.71 Aligned_cols=294 Identities=26% Similarity=0.351 Sum_probs=210.7
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCccee
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKY 571 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~ 571 (1095)
.+|+.++.... -....+.+|+.|....|++..+.. --.+|+.|+.+.|++..+ ..-.+|++
T Consensus 182 ~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~-------------~g~~l~~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 182 QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEI-------------SGPSLTALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred eeecccchhhh---hhhhhccchhhhhhhhcccceEEe-------------cCcchheeeeccCcceeecccccccccee
Confidence 46666665442 234456677777777776654322 112677777777777655 23357888
Q ss_pred ecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcc
Q 047103 572 IDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVN 649 (1095)
Q Consensus 572 L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~ 649 (1095)
+++++|++ ..+|+ ++.+.+|+.|+...|.. ..+|..+..+++|+.|++..| .++.+|.....+++|+ |++ .-++
T Consensus 246 ~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL-~~N~ 321 (1081)
T KOG0618|consen 246 LDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL-QSNN 321 (1081)
T ss_pred eecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee-hhcc
Confidence 88888854 44444 67888888888887665 677777888888888888774 4666777677777777 444 3456
Q ss_pred cCCCccccC-----CceEEEecCCCCccccCcc-CCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 650 LSEFPRISG-----NVVELKLRHTPIEEVPSSI-DCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 650 L~~~p~~~~-----~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
|..+|...- .+..|+.+.|.+..+|..= ..++.|+.|++.+|.+....-+.+.+.++|+.|+|++|.+.
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~----- 396 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN----- 396 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-----
Confidence 666665321 2455666777777777432 34677999999999888877777888999999999997543
Q ss_pred cccccCc-cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCc--ccCc
Q 047103 724 NIKELPS-SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFE--SLPS 798 (1095)
Q Consensus 724 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~ 798 (1095)
.+|. .+.++..|+.|+|+||.+ ..+|..+..+..|++|..++ +..+| .+..++.|+.+|||.|+++ .+|.
T Consensus 397 ---~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 397 ---SFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred ---cCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhh
Confidence 4554 467889999999999875 56778899999999995554 55678 7889999999999999998 4554
Q ss_pred ccCCCCCCCEEeccCCCCccc
Q 047103 799 GISHLSRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 799 ~l~~L~~L~~L~L~~c~~l~~ 819 (1095)
.... ++|++|+|++|..+..
T Consensus 472 ~~p~-p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 472 ALPS-PNLKYLDLSGNTRLVF 491 (1081)
T ss_pred hCCC-cccceeeccCCccccc
Confidence 4333 8999999999987544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=7.1e-14 Score=172.02 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=37.0
Q ss_pred CCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCCCCccceeecccCccCcccC
Q 047103 781 SSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 781 ~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~~L~~lp 843 (1095)
++|+.|+|++|+|+.+|..+. ++|+.|+|++|.. ....+.++.+|+.|++++|. |..+|
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~-L~~LP 404 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL-TNLPENLPAALQIMQASRNN-LVRLP 404 (754)
T ss_pred CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCC-cccCc
Confidence 567777777777777776542 5677777777743 33123455667777777764 44554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.5e-15 Score=143.99 Aligned_cols=171 Identities=32% Similarity=0.449 Sum_probs=145.7
Q ss_pred CCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCC
Q 047103 658 GNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~ 737 (1095)
.+++.|.|++|+++.+|..|..+.+|+.|++++|+ ++.+|.++..++.|+.|+++-|.+ ..+|..|+.++.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl--------~~lprgfgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL--------NILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh--------hcCccccCCCch
Confidence 35678999999999999999999999999999865 678899999999999999987543 357889999999
Q ss_pred CCEEEecCCCCCC-CCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCC
Q 047103 738 LRELQLMGCTKLG-SLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 738 L~~L~L~~~~~~~-~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c 814 (1095)
|+.|+|..|++.. .+|..|..++.|+-|.+.. ..-+|..++.+++|+.|.+..|.+-++|..++.|+.|+.|.+.+|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 9999999888764 5888888888888875554 566999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCccceeecccCccCccc
Q 047103 815 IMLQSSLPELPPHLVMLDARNCKRLQSL 842 (1095)
Q Consensus 815 ~~l~~~lp~l~~sL~~L~l~~c~~L~~l 842 (1095)
+ +..+||-|-.|++.+.+....+
T Consensus 184 r-----l~vlppel~~l~l~~~k~v~r~ 206 (264)
T KOG0617|consen 184 R-----LTVLPPELANLDLVGNKQVMRM 206 (264)
T ss_pred e-----eeecChhhhhhhhhhhHHHHhh
Confidence 6 4556777777777776654444
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.2e-14 Score=156.63 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=67.3
Q ss_pred eecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCc
Q 047103 494 IFLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPK 568 (1095)
Q Consensus 494 i~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~ 568 (1095)
..+++..|.+..|++.+|+.+++||.|+|++|.|+.|.. ..+..++.-++.+..++|.++.+ ..|..
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p--------~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP--------DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcCh--------HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 456777888999999999999999999999999886644 23333332223333333444433 34444
Q ss_pred ceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCC
Q 047103 569 LKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGC 624 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 624 (1095)
|+.|.+.-|+..-...+ |..+++|..|.+-+|..-..-..++..+..++++.+..|
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 44444444433222222 444455555555444332222224444555555544443
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=5.7e-15 Score=141.58 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=100.4
Q ss_pred CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 565 KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
.+.+++.|.||+|++....|.+..+.+|+.|++++|+ +..+|.+++.|++|++|++.-
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm--------------------- 88 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM--------------------- 88 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch---------------------
Confidence 4445555666666555555555555555555555443 334455555555555555543
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCC-ccccccCCCCCCCEEEccCccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLK-SLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~-~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
|.+..+|.+|+.++.|+.|||..|++.+ .+|..|..++.|+-|+|+.|
T Consensus 89 -----------------------nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-------- 137 (264)
T KOG0617|consen 89 -----------------------NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-------- 137 (264)
T ss_pred -----------------------hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC--------
Confidence 3333445555566666666666655443 45666666666666666653
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHL 803 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L 803 (1095)
.++-+|..++++++|+.|.+..|. +-++|..++.++.|++|.+.+|.++.+|..+.++
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdnd----------------------ll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDND----------------------LLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCc----------------------hhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 234456666666666666666554 3456778888999999999999999999876553
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=8.8e-14 Score=158.39 Aligned_cols=252 Identities=15% Similarity=0.073 Sum_probs=118.2
Q ss_pred CCcceeecccCCCCccc----cC-CCCCCccccEeeccCCccC------ccccccccCCCCcceEeccCCCCCcccCCcc
Q 047103 566 APKLKYIDLNHSSNLTR----IP-EPSETPNLDRMNLWNCTGL------ALIPSYIQNFNNLGNLSLEGCESLRCFPQNI 634 (1095)
Q Consensus 566 l~~L~~L~Ls~n~~l~~----~p-~~~~l~~L~~L~L~~~~~l------~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i 634 (1095)
+.+|+.|+|+++.+... ++ .+...++|++|+++++... ..++..+..+++|+.|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 33455555555543221 12 1344455666666555433 1123344555566666666655443333222
Q ss_pred ccccc---ce-eeccCCcccC--------CCccccCCceEEEecCCCCc-----cccCccCCCCCCcEEeccCCCCCC--
Q 047103 635 HFVSS---IK-INCSECVNLS--------EFPRISGNVVELKLRHTPIE-----EVPSSIDCLPDLETLEMSNCYSLK-- 695 (1095)
Q Consensus 635 ~~l~~---L~-l~l~~c~~L~--------~~p~~~~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~Ls~~~~l~-- 695 (1095)
..+.. |+ +.+++|.--. .++....+|++|++++|.++ .++..+..+++|++|++++|.+.+
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 22222 33 2222221100 00111134555555555554 223334445555555555555442
Q ss_pred --ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCccc
Q 047103 696 --SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKI 773 (1095)
Q Consensus 696 --~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~l 773 (1095)
.++..+..+++|++|++++|.+.+ .....++..+..+++|+.|++++|.+...-.. .+
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~-----------------~l 241 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTD---EGASALAETLASLKSLEVLNLGDNNLTDAGAA-----------------AL 241 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccCh---HHHHHHHHHhcccCCCCEEecCCCcCchHHHH-----------------HH
Confidence 122233344555555555554432 12222333344455555555555543321000 00
Q ss_pred Cccc-CCCCCCCeeeCCCCCCc-----ccCcccCCCCCCCEEeccCCCCcccC-------CCCCCCccceeecccCc
Q 047103 774 PRDI-GCLSSLVELDLSRNNFE-----SLPSGISHLSRLKWLHLFDCIMLQSS-------LPELPPHLVMLDARNCK 837 (1095)
Q Consensus 774 p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~L~~L~~L~L~~c~~l~~~-------lp~l~~sL~~L~l~~c~ 837 (1095)
...+ ...+.|+.|++++|.++ .+...+..+++|++|++++|..-... +....+.|+.|++.+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0111 12468888888888885 34445666788888888888654220 11112577777776654
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=3.5e-13 Score=153.39 Aligned_cols=242 Identities=23% Similarity=0.189 Sum_probs=137.7
Q ss_pred ecccCCCCc-cccCC-CCCCccccEeeccCCccCc----cccccccCCCCcceEeccCCCCCc------ccCCccccccc
Q 047103 572 IDLNHSSNL-TRIPE-PSETPNLDRMNLWNCTGLA----LIPSYIQNFNNLGNLSLEGCESLR------CFPQNIHFVSS 639 (1095)
Q Consensus 572 L~Ls~n~~l-~~~p~-~~~l~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~L~~c~~l~------~lp~~i~~l~~ 639 (1095)
|+|..+... ...+. +..+++|++|++++|.... .++..+...++|++|+++++...+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555443 12222 4566779999999988633 356667788889999999865431 12222333334
Q ss_pred ceeeccCCcccCCCccccCCceEEEecCCCCc-cccCccCCC---CCCcEEeccCCCCCC----ccccccCCC-CCCCEE
Q 047103 640 IKINCSECVNLSEFPRISGNVVELKLRHTPIE-EVPSSIDCL---PDLETLEMSNCYSLK----SLSTNICKL-KSLRSL 710 (1095)
Q Consensus 640 L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~-~lp~~i~~l---~~L~~L~Ls~~~~l~----~lp~~l~~L-~~L~~L 710 (1095)
|+.|++++|.+. ..+..+..+ ++|+.|++++|.... .+...+..+ ++|+.|
T Consensus 83 --------------------L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 83 --------------------LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------------------eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 455555555554 222222222 336666666655442 222233444 566666
Q ss_pred EccCccccccccccccccCccccCCCCCCEEEecCCCCCCC----CCcccCCCccccccccCCCc-------ccCcccCC
Q 047103 711 HLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGS----LPESLGNLKALEFLSAAGII-------KIPRDIGC 779 (1095)
Q Consensus 711 ~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~L~~L~~L~l~~~~-------~lp~~l~~ 779 (1095)
++++|.+.+. ....++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++.. .++..+..
T Consensus 143 ~L~~n~l~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 143 VLGRNRLEGA---SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred EcCCCcCCch---HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 6666655431 1122333444555666666666655432 22233444556665544321 24455677
Q ss_pred CCCCCeeeCCCCCCcc--c---Cccc-CCCCCCCEEeccCCCCcc-------cCCCCCCCccceeecccCc
Q 047103 780 LSSLVELDLSRNNFES--L---PSGI-SHLSRLKWLHLFDCIMLQ-------SSLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 780 l~~L~~L~Ls~n~l~~--l---p~~l-~~L~~L~~L~L~~c~~l~-------~~lp~l~~sL~~L~l~~c~ 837 (1095)
+++|+.|++++|.++. + ...+ ...+.|+.|++++|.... ..++.. ++|+.|++++|.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~ 289 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNK 289 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCC
Confidence 8999999999999873 1 1111 235899999999997531 112333 689999999987
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-13 Score=145.27 Aligned_cols=231 Identities=17% Similarity=0.156 Sum_probs=121.6
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCC-cccccccceeeccCCcccCCCc----cccCCc
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQ-NIHFVSSIKINCSECVNLSEFP----RISGNV 660 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~l~l~~c~~L~~~p----~~~~~L 660 (1095)
|+.+++|+.|||+.|.+...-|..|.+|++|..|-+.+++.++.+|. .+++|.+|++.+.+-+.+.-++ ..+.++
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 44444444444444444444444444444444444444444444442 2334444442111111221111 122344
Q ss_pred eEEEecCCCCccccC-ccCCCCCCcEEeccCCCCC------------CccccccCCCCCCCEEEccCcccccc-------
Q 047103 661 VELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSL------------KSLSTNICKLKSLRSLHLAFCEQLGK------- 720 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l------------~~lp~~l~~L~~L~~L~Ls~~~~~~~------- 720 (1095)
..|.+..|.+..++. .+..+..++.+.+..|... ...|..++...-..-..+.+.++...
T Consensus 167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 566677777777776 5677777777777665521 11222222222222222211111000
Q ss_pred ----cccc-------ccccC-ccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccC-cccCCCCCCCe
Q 047103 721 ----EASN-------IKELP-SSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIP-RDIGCLSSLVE 785 (1095)
Q Consensus 721 ----~~~~-------i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp-~~l~~l~~L~~ 785 (1095)
.|.. ....| ..|..|++|++|+|++|.+...-+.+|.++.+|+.|.+.. +..+. ..+.+++.|+.
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 0000 00111 1367888999999999988888888888888887775554 33332 23567778888
Q ss_pred eeCCCCCCccc-CcccCCCCCCCEEeccCCCC
Q 047103 786 LDLSRNNFESL-PSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 786 L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~ 816 (1095)
|+|.+|+|+.+ |..+..+.+|.+|+|-.|+.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88888888754 45667777778887776653
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.21 E-value=8.3e-12 Score=116.37 Aligned_cols=89 Identities=28% Similarity=0.474 Sum_probs=75.0
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
|||+++| +.|+..|.+.|++.|+++|.|. ++..|+.+..++.+||++|+..|+++|++|..|.||..|+..+.+
T Consensus 3 IS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--- 76 (102)
T PF13676_consen 3 ISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--- 76 (102)
T ss_dssp EEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC---
T ss_pred EEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH---
Confidence 6899999 6799999999999999999998 799999999999999999999999999999999999999998843
Q ss_pred cCCCeEEeEEeeeccccc
Q 047103 81 ANDQIVIPVFYNVSPFSV 98 (1095)
Q Consensus 81 ~~~~~v~pvfy~v~ps~v 98 (1095)
.++.|+||. +++.++
T Consensus 77 -~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 77 -RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp -TSESEEEEE--CSGGGS
T ss_pred -CCCEEEEEE--ECCcCC
Confidence 456799997 444443
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=1.5e-09 Score=141.85 Aligned_cols=271 Identities=12% Similarity=0.141 Sum_probs=170.5
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+|....++|-|+.-++.+... ...+++.|.|++|.||||++.....+ +..++|+. +.... .+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCccc---CCHHHH
Confidence 555667888888766666421 45789999999999999999997753 33688985 43322 234444
Q ss_pred HHHHHHHhcCCCcc----c-------cCCCch---HHHHhhhc--CCeEEEEecCCCChh------hHHHHhcCCCCCCC
Q 047103 248 QKQILSTILSEKLE----V-------AGPNIP---QFTKGRFR--CMKVLIVLDNVSKVG------QLEGLIGGLDQFGL 305 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~----~-------~~~~~~---~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~ 305 (1095)
...++..+...... . ...... ..+...+. ..+++|||||+.... .+..+... ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 45555554311110 0 001111 11222222 578999999996532 24444433 345
Q ss_pred CCEEEEEeCchHHH--HhcC-cceEEEcc----CCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeec
Q 047103 306 GSRIIITTRDKRVL--EKFG-VKKIYRVN----GLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMG 378 (1095)
Q Consensus 306 gsrIIiTTR~~~v~--~~~~-~~~~~~v~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 378 (1095)
+-++|||||...-. ..+. .....++. .|+.+|+.++|....... --.+...++.+.++|.|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHH
Confidence 67898999984211 1111 12345555 899999999997654211 123456789999999999998877
Q ss_pred cccccccc------------c-c---------ccCCCCHHHHHHhhhhhcccCCCCHHHHHHHhhccC-CCccceeccCC
Q 047103 379 SSLYQKSK------------T-H---------CFNDLTFEAKNIFLDIACFFEGEDKDFVMRVLDDFV-SPELDVLIDKS 435 (1095)
Q Consensus 379 ~~L~~~~~------------~-~---------sy~~L~~~~k~~fl~~a~f~~~~~~~~v~~~l~~~~-~~~l~~L~~~s 435 (1095)
..+..... . . .++.||+..++.++..|+++ ..+.+....+..... ...++.|.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 227 LSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQG 305 (903)
T ss_pred HHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCC
Confidence 65543221 1 1 47899999999999999986 555554444443222 12288999999
Q ss_pred ceeEe----CCEEEeeHHHHHHHHHHHhhc
Q 047103 436 LVTIL----DNRLQMHDLLQEMGREIVRKE 461 (1095)
Q Consensus 436 Li~~~----~~~~~mHdll~~~~~~i~~~e 461 (1095)
++... ...|.+|++++++.+.-...+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 86532 237999999999998876433
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=1.8e-10 Score=144.24 Aligned_cols=248 Identities=25% Similarity=0.335 Sum_probs=164.2
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCcc-Ccccc-ccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTG-LALIP-SYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~-l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
..+.+.+-+|. ...++.-...++|++|-+.+|.. +..++ ..|..++.|++|||++|..+..+|..|+.|-+|+
T Consensus 524 ~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr---- 598 (889)
T KOG4658|consen 524 SVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR---- 598 (889)
T ss_pred heeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh----
Confidence 34445554442 33344444555777887777763 34444 3467788888888888888888888888776655
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNI 725 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i 725 (1095)
+|+|+++.|+.+|.++++|..|.+|++..+..+..+|..+..|++|++|.+..-.... -
T Consensus 599 ----------------yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~ 657 (889)
T KOG4658|consen 599 ----------------YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----D 657 (889)
T ss_pred ----------------cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----c
Confidence 7788888899999999999999999999988888887777789999999997643111 1
Q ss_pred cccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccccc----cc--CCCcccCcccCCCCCCCeeeCCCCCCcccCc-
Q 047103 726 KELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFL----SA--AGIIKIPRDIGCLSSLVELDLSRNNFESLPS- 798 (1095)
Q Consensus 726 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L----~l--~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~- 798 (1095)
...-..+.++.+|+.|....... .+-..+..++.|..+ .. +.....+..+..+.+|+.|.+.++.+.+...
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 11222345666777666654432 111223334444432 21 2344466778888999999999988764322
Q ss_pred c-----cCC-CCCCCEEeccCCCCcccCCCC-CCCccceeecccCccCcccC
Q 047103 799 G-----ISH-LSRLKWLHLFDCIMLQSSLPE-LPPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 799 ~-----l~~-L~~L~~L~L~~c~~l~~~lp~-l~~sL~~L~l~~c~~L~~lp 843 (1095)
+ ... +++|..+.+.+|..+....+. .||+|+.|.+..|+.++.+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 1 111 456777777788776662222 57999999999999887764
No 31
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=6.3e-09 Score=106.07 Aligned_cols=141 Identities=19% Similarity=0.282 Sum_probs=85.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC------CceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF------EGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFT 271 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F------~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l 271 (1095)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..... .....+...|............. .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~-----~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDS-NNSRSLADLLFDQLPESIAPIEE-----LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhc-cccchHHHHHHHhhccchhhhHH-----HH
Confidence 5789999999999999999999875543 233343 34333222 11123444444333222111111 12
Q ss_pred Hh-hhcCCeEEEEecCCCChhh---------HHHHhcC-CCC-CCCCCEEEEEeCchHH---HHhcCcceEEEccCCChh
Q 047103 272 KG-RFRCMKVLIVLDNVSKVGQ---------LEGLIGG-LDQ-FGLGSRIIITTRDKRV---LEKFGVKKIYRVNGLQFD 336 (1095)
Q Consensus 272 ~~-~L~~kr~LlVLDdv~~~~~---------l~~l~~~-~~~-~~~gsrIIiTTR~~~v---~~~~~~~~~~~v~~L~~~ 336 (1095)
.. .-..++++||||++++... +..+... ++. ..++.+||||+|.... .........+++++|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 22 2256799999999976433 1222211 111 2568999999998876 233344468999999999
Q ss_pred HHHHHHHHh
Q 047103 337 VALEQFCNY 345 (1095)
Q Consensus 337 ea~~Lf~~~ 345 (1095)
+..+++.++
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999998665
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.90 E-value=2.5e-08 Score=117.09 Aligned_cols=232 Identities=14% Similarity=0.085 Sum_probs=138.0
Q ss_pred CCCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~ 246 (1095)
..++.++||+.++++|...+.... +.....+.|+|++|+||||+++.+++++..... ..+++. ... ..+...
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~----~~~~~~ 101 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQI----DRTRYA 101 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCc----CCCHHH
Confidence 356789999999999999985532 234456789999999999999999998765542 233332 221 135567
Q ss_pred HHHHHHHHhcCCCccccC---CCchHHHHhhhc--CCeEEEEecCCCChh------hHHHHhcCCCCCCCCCE--EEEEe
Q 047103 247 LQKQILSTILSEKLEVAG---PNIPQFTKGRFR--CMKVLIVLDNVSKVG------QLEGLIGGLDQFGLGSR--IIITT 313 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gsr--IIiTT 313 (1095)
+...++.++........+ .+..+.+.+.+. ++.++||||+++... .+..+...... .++++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 788888887652221111 223344555554 456899999998753 35555433222 23444 56666
Q ss_pred CchHHHHhcC-------cceEEEccCCChhHHHHHHHHhhh---ccCCCCc-chHHHHHHHHHHhCCCCcceeeecccc-
Q 047103 314 RDKRVLEKFG-------VKKIYRVNGLQFDVALEQFCNYAF---KENRCPK-DLIGHSWRVVRYAKGNPLALKVMGSSL- 381 (1095)
Q Consensus 314 R~~~v~~~~~-------~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~-~~~~l~~~i~~~~~GlPLal~~lg~~L- 381 (1095)
.+..+..... ....+.+++++.++..+++..++- .....++ .++.+++......|..+.|+.++-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6654433211 124678999999999999987762 2222222 223333333333455777766653221
Q ss_pred -c---cccccc------------------ccCCCCHHHHHHhhhhhcc
Q 047103 382 -Y---QKSKTH------------------CFNDLTFEAKNIFLDIACF 407 (1095)
Q Consensus 382 -~---~~~~~~------------------sy~~L~~~~k~~fl~~a~f 407 (1095)
. ++.... .+..||.++|..+..++..
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 111100 5778888888877766633
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.87 E-value=8.2e-09 Score=111.63 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=98.9
Q ss_pred cccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH------H
Q 047103 175 LVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL------Q 248 (1095)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l------~ 248 (1095)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+........ ..+..+ .
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHH
Confidence 689999999999998764 25678899999999999999999987443224444432211100 001111 1
Q ss_pred HH----HHHHhcCCCc-------cccCCCchHHHHhhhc--CCeEEEEecCCCChh-----------hHHHHhcCCCCCC
Q 047103 249 KQ----ILSTILSEKL-------EVAGPNIPQFTKGRFR--CMKVLIVLDNVSKVG-----------QLEGLIGGLDQFG 304 (1095)
Q Consensus 249 ~~----ll~~l~~~~~-------~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~l~~l~~~~~~~~ 304 (1095)
+. +...+..... ..........+.+.+. +++++||+||+.... .+..+.......
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ- 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-
Confidence 11 1111221111 0111122222333333 245999999997655 122233222222
Q ss_pred CCCEEEEEeCchHHHHh--------cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 305 LGSRIIITTRDKRVLEK--------FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 305 ~gsrIIiTTR~~~v~~~--------~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
..-.+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+.-.+..++|...+||+|..|.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 23345555555545433 2333459999999999999998864222 1001124455899999999998653
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=4.3e-08 Score=108.75 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=107.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh-
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR- 274 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 274 (1095)
...++.|+|++|+||||||+.+++.+...=-..+++.+ .. .+...+.+.+...++..............+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999986522111223221 11 455677778877765432211111111222222
Q ss_pred ----hcCCeEEEEecCCCChh--hHHHHhc---CCCCCCCCCEEEEEeCchHHHHhc----------CcceEEEccCCCh
Q 047103 275 ----FRCMKVLIVLDNVSKVG--QLEGLIG---GLDQFGLGSRIIITTRDKRVLEKF----------GVKKIYRVNGLQF 335 (1095)
Q Consensus 275 ----L~~kr~LlVLDdv~~~~--~l~~l~~---~~~~~~~gsrIIiTTR~~~v~~~~----------~~~~~~~v~~L~~ 335 (1095)
..++++++|+||++... .++.+.. ..........|++|.... ....+ .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 25678999999998754 3554432 111112223455555432 21111 1234678999999
Q ss_pred hHHHHHHHHhhhccCC--CCcchHHHHHHHHHHhCCCCcceeeecccc
Q 047103 336 DVALEQFCNYAFKENR--CPKDLIGHSWRVVRYAKGNPLALKVMGSSL 381 (1095)
Q Consensus 336 ~ea~~Lf~~~af~~~~--~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 381 (1095)
+|..+++...+-.... ...--.+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999876532211 112235778899999999999988887655
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.82 E-value=1.2e-07 Score=110.23 Aligned_cols=233 Identities=15% Similarity=0.148 Sum_probs=134.3
Q ss_pred CCCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC------ceEEEEecccccCCCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE------GTCFVADVRRNSGTGG 242 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~------~~~~v~~v~~~~~~~~ 242 (1095)
..++.++||++++++|...|.... +.....+.|+|++|+|||++++++++.+....+ ..+|+. ... ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~----~~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQI----LD 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCC----CC
Confidence 345689999999999999986521 134467899999999999999999997654322 233443 221 13
Q ss_pred CHHHHHHHHHHHhcC--CCccccC---CCchHHHHhhhc--CCeEEEEecCCCChh-----hHHHHhcCCCC-CC--CCC
Q 047103 243 GLEHLQKQILSTILS--EKLEVAG---PNIPQFTKGRFR--CMKVLIVLDNVSKVG-----QLEGLIGGLDQ-FG--LGS 307 (1095)
Q Consensus 243 ~l~~l~~~ll~~l~~--~~~~~~~---~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~~~-~~--~gs 307 (1095)
+...+...++.++.. ......+ .+..+.+.+.+. +++++||||+++... .+..+.....+ .. ..-
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456777788877631 1111111 112233444443 567899999998762 13343322111 11 223
Q ss_pred EEEEEeCchHHHHhcC-------cceEEEccCCChhHHHHHHHHhhh---ccCCCCcchHHHHHHHHHHhCCCCc-ceee
Q 047103 308 RIIITTRDKRVLEKFG-------VKKIYRVNGLQFDVALEQFCNYAF---KENRCPKDLIGHSWRVVRYAKGNPL-ALKV 376 (1095)
Q Consensus 308 rIIiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 376 (1095)
.+|.+|........+. ....+.+++.+.+|..+++..++- ......++..++..+++....|.|- |+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555555443322211 124688999999999999988763 2222223334455556666677763 3332
Q ss_pred eccc--cc---cccccc------------------ccCCCCHHHHHHhhhhhcc
Q 047103 377 MGSS--LY---QKSKTH------------------CFNDLTFEAKNIFLDIACF 407 (1095)
Q Consensus 377 lg~~--L~---~~~~~~------------------sy~~L~~~~k~~fl~~a~f 407 (1095)
+-.. +. +..... ...+||.++|.++..++..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 11 111000 5678899888877776643
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.79 E-value=2.3e-08 Score=113.08 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=141.8
Q ss_pred CCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQ 250 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ 250 (1095)
.++||++..++++..++.... ......+.++|++|+||||||+++++++...+. ++. .... .....+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~----~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPAL----EKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchh----cCchhHH-H
Confidence 579999999999998886421 133556789999999999999999998764331 111 1000 1111111 1
Q ss_pred HHHHhcCCCcc-cc-----CCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhc--
Q 047103 251 ILSTILSEKLE-VA-----GPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKF-- 322 (1095)
Q Consensus 251 ll~~l~~~~~~-~~-----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-- 322 (1095)
.+..+.....- ++ .....+.+...+.+.+..+|+|+..+..++.... .+..-|..|||...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHh
Confidence 22222211100 00 0111223444445555666666655544443211 2345566677765443221
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccc------ccc-ccc-------
Q 047103 323 GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLY------QKS-KTH------- 388 (1095)
Q Consensus 323 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~------~~~-~~~------- 388 (1095)
.....+++++++.+|..+++...+-.... .--.+....|++.|+|.|-.+..++..+. +.. ...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 12357899999999999999987743222 12245667899999999976554443321 111 110
Q ss_pred -----ccCCCCHHHHHHhh-hhhcccCC-CCHHHHHHHhhccC-CCc--cc-eeccCCceeEe
Q 047103 389 -----CFNDLTFEAKNIFL-DIACFFEG-EDKDFVMRVLDDFV-SPE--LD-VLIDKSLVTIL 440 (1095)
Q Consensus 389 -----sy~~L~~~~k~~fl-~~a~f~~~-~~~~~v~~~l~~~~-~~~--l~-~L~~~sLi~~~ 440 (1095)
.|.+|+..++..+. .++.+..+ ...+.+...+.... ..+ ++ .|++++||...
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 67888888887666 44555433 33444444443322 222 66 59999999643
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.77 E-value=2.3e-08 Score=113.90 Aligned_cols=255 Identities=15% Similarity=0.091 Sum_probs=142.3
Q ss_pred cCCCCCcccchhHHHHHHHhhhcc--CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCME--LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|...++++|++..++.+..++... .+...+.+.|+|++|+||||||+.+++.+...+. ++. ... ... . .
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~-~~~---~-~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA-LEK---P-G 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc-ccC---h-H
Confidence 345678999999999998888642 1234567889999999999999999998764331 111 110 011 1 1
Q ss_pred HHHHHHHHhcCCCcc-ccC-----CCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHH
Q 047103 247 LQKQILSTILSEKLE-VAG-----PNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLE 320 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~-~~~-----~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 320 (1095)
-...++..+.....- ++. ....+.+...+.+.+..+|+|+..+..++... + .+.+-|..|||...+..
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~---l---~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD---L---PPFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec---C---CCceEEeecCCcccCCH
Confidence 112222222211100 000 01112233333444445555544333322111 1 12345666777554432
Q ss_pred hc--CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccc------cccccc----
Q 047103 321 KF--GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLY------QKSKTH---- 388 (1095)
Q Consensus 321 ~~--~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~------~~~~~~---- 388 (1095)
.+ .....++++.++.++..+++.+.+-.... .--.+....|++.|+|.|-.+..+...+. ++....
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v 243 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIA 243 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 21 12357899999999999999988754322 22345678999999999965544433221 111111
Q ss_pred ---------ccCCCCHHHHHHhh-hhhcccCC-CCHHHHHHHhhccC-CCc--cc-eeccCCceeEe
Q 047103 389 ---------CFNDLTFEAKNIFL-DIACFFEG-EDKDFVMRVLDDFV-SPE--LD-VLIDKSLVTIL 440 (1095)
Q Consensus 389 ---------sy~~L~~~~k~~fl-~~a~f~~~-~~~~~v~~~l~~~~-~~~--l~-~L~~~sLi~~~ 440 (1095)
.+.+|+...+..+. .+..|..+ ...+.+...+.... ..+ ++ .|++.+||+..
T Consensus 244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 244 DKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 67788888888775 55555544 34555655554332 222 66 88888888643
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.1e-09 Score=123.69 Aligned_cols=124 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCC
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSEC 647 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c 647 (1095)
--...||+.|++.....+++.+..|+.|.|..|. ...+|..+.+|..|++|||+. +.+..+|..+..|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp--------- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP--------- 144 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc---------
Confidence 3445677777655444456667777777776654 345677777777777777776 34455555554332
Q ss_pred cccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFC 715 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~ 715 (1095)
|+.|-+++|+++.+|..++.+..|..|+.+.|. +..+|..++.+.+|+.|.+..|
T Consensus 145 ------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 145 ------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred ------------ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh
Confidence 345566666666666666655666666666543 2344444555555555555543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.3e-09 Score=116.79 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=112.2
Q ss_pred CCCcceeecccCCCCccccC---CCCCCccccEeeccCCccCc--cccccccCCCCcceEeccCCCCCcccCCccccccc
Q 047103 565 KAPKLKYIDLNHSSNLTRIP---EPSETPNLDRMNLWNCTGLA--LIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS 639 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p---~~~~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~ 639 (1095)
++.+|+.+.|.++... ..+ ....+++++.|||+.|-... .+-.....|++|+.|+|+.|....-..+..
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 3445555555544221 111 23455666666666543221 122334456666667666654322111100
Q ss_pred ceeeccCCcccCCCccccCCceEEEecCCCCc--cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccc
Q 047103 640 IKINCSECVNLSEFPRISGNVVELKLRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQ 717 (1095)
Q Consensus 640 L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~ 717 (1095)
-..+.+|+.|.|+.|.++ ++-..+..+|+|+.|+|..|.....-......+..|++|+|++|.+
T Consensus 193 --------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 193 --------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred --------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 012234456666666655 2333345567777777777754333333344566777777777665
Q ss_pred cccccccccccCccccCCCCCCEEEecCCCCCCC-CCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCccc
Q 047103 718 LGKEASNIKELPSSIENLEGLRELQLMGCTKLGS-LPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESL 796 (1095)
Q Consensus 718 ~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~l 796 (1095)
.... .-...+.++.|+.|+++.|.+... .|+ . +.-.-...+++|++|+++.|++..+
T Consensus 259 i~~~------~~~~~~~l~~L~~Lnls~tgi~si~~~d------------~----~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 259 IDFD------QGYKVGTLPGLNQLNLSSTGIASIAEPD------------V----ESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccc------cccccccccchhhhhccccCcchhcCCC------------c----cchhhhcccccceeeecccCccccc
Confidence 4421 112345666777777666553321 111 0 0001134678999999999999877
Q ss_pred Cc--ccCCCCCCCEEeccCCCCcc
Q 047103 797 PS--GISHLSRLKWLHLFDCIMLQ 818 (1095)
Q Consensus 797 p~--~l~~L~~L~~L~L~~c~~l~ 818 (1095)
+. .+..+++|+.|.+..|+.-.
T Consensus 317 ~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhccchhhhhhcccccccc
Confidence 64 46667888888877776543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=2.9e-08 Score=116.62 Aligned_cols=150 Identities=35% Similarity=0.463 Sum_probs=99.0
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGL 738 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L 738 (1095)
+|+.|++++|.+..+|..++.+++|+.|++++|.+ ..+|...+.+++|+.|++++|.+ ..+|..+..+..|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i--------~~l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKI--------SDLPPEIELLSAL 211 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCcc--------ccCchhhhhhhhh
Confidence 45677777777777776777777777777777653 34444444677777777777543 3455555555667
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCCC--cccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAGI--IKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~--~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
++|.+++|... ..+..+.++..+..|.+.+. ..++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++..
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 77777777522 23334555555555543332 3345677777888888888888888776 77788888888887765
Q ss_pred ccc
Q 047103 817 LQS 819 (1095)
Q Consensus 817 l~~ 819 (1095)
...
T Consensus 290 ~~~ 292 (394)
T COG4886 290 SNA 292 (394)
T ss_pred ccc
Confidence 443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.4e-07 Score=103.82 Aligned_cols=123 Identities=22% Similarity=0.343 Sum_probs=85.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
..+...-.||++|+||||||+.++......|...-=+ ..+++++.+.+-.. -+.+
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i~e~a----------------~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREIIEEA----------------RKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHHHHHH----------------HHHH
Confidence 4466677999999999999999999877766432211 15566655544221 2344
Q ss_pred hcCCeEEEEecCCC--ChhhHHHHhcCCCCCCCCCEEEE--EeCchHHH---HhcCcceEEEccCCChhHHHHHHHHh
Q 047103 275 FRCMKVLIVLDNVS--KVGQLEGLIGGLDQFGLGSRIII--TTRDKRVL---EKFGVKKIYRVNGLQFDVALEQFCNY 345 (1095)
Q Consensus 275 L~~kr~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~---~~~~~~~~~~v~~L~~~ea~~Lf~~~ 345 (1095)
..++|.+|.+|.|. +..|-+.|++.. ..|.-|+| ||.+.... ....-..+|++++|+.+|-.+++.+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 55889999999995 456677776554 46766766 77776431 11223479999999999999999883
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2.3e-07 Score=99.79 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=90.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
.+.+.|||.+|+|||+||+++++.+..+...+.|+... . ......+ +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~-------~~~~~~~--------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-K-------SQYFSPA--------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-H-------hhhhhHH--------------------HHhhcc
Confidence 35688999999999999999999876665566777521 0 0000011 111122
Q ss_pred CCeEEEEecCCCCh---hhHHH-HhcCCCCC-CCCCEEEEEeCc----------hHHHHhcCcceEEEccCCChhHHHHH
Q 047103 277 CMKVLIVLDNVSKV---GQLEG-LIGGLDQF-GLGSRIIITTRD----------KRVLEKFGVKKIYRVNGLQFDVALEQ 341 (1095)
Q Consensus 277 ~kr~LlVLDdv~~~---~~l~~-l~~~~~~~-~~gsrIIiTTR~----------~~v~~~~~~~~~~~v~~L~~~ea~~L 341 (1095)
+.-+|||||++.. .+|+. +...+... ..|+.+||+|.+ +++...++....++++++++++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2248999999863 33442 22212111 245666555443 36666666667999999999999999
Q ss_pred HHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 342 FCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 342 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
+.+.++...-. --.+...-+++++.|-.-+
T Consensus 170 L~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 170 LQRNAYQRGIE--LSDEVANFLLKRLDRDMHT 199 (229)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhccCCHHH
Confidence 99998754321 1234555666766655443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=3.8e-09 Score=119.55 Aligned_cols=164 Identities=28% Similarity=0.417 Sum_probs=119.7
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
|+.|.|..|.+..+|..+.++..|.+|+|+.|. +..+|..++.|+ |+.|-+++|++ +.+|..++.+..|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl--------~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL--------TSLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc--------ccCCcccccchhHH
Confidence 345667777777788888888888888888755 446666677666 77777777543 35677777777888
Q ss_pred EEEecCCCCCCCCCcccCCCccccccccC--CCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCc
Q 047103 740 ELQLMGCTKLGSLPESLGNLKALEFLSAA--GIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~~l~~L~~L~~L~l~--~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l 817 (1095)
.|+.+.|.+. .+|..++++.+|+.|+.. ++..+|..+.. -.|..||+|.|++..+|..+.++..|++|.|.+|+.
T Consensus 170 ~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL- 246 (722)
T KOG0532|consen 170 HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL- 246 (722)
T ss_pred Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCC-
Confidence 8888777643 456667788888877543 36678888773 468999999999999999999999999999999974
Q ss_pred ccCCCC-C-----CCccceeecccCc
Q 047103 818 QSSLPE-L-----PPHLVMLDARNCK 837 (1095)
Q Consensus 818 ~~~lp~-l-----~~sL~~L~l~~c~ 837 (1095)
++ .|. + --=.++|++.-|.
T Consensus 247 qS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 247 QS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CC-ChHHHHhccceeeeeeecchhcc
Confidence 33 332 1 1234678888884
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.5e-08 Score=105.97 Aligned_cols=197 Identities=21% Similarity=0.158 Sum_probs=129.5
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcc----cCCCccccCCc
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVN----LSEFPRISGNV 660 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~----L~~~p~~~~~L 660 (1095)
++-+.+|..+.++.|.--. +..-...-+.|+++...+ .-+...|.-+. ...+. .....-.- +...-.....|
T Consensus 210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~-s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHN-TTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchhh-eeceeecCchhheeeeec-ccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhh
Confidence 4566788888888875322 222222346777777765 33333222111 11111 10000000 00011223467
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCE
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRE 740 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~ 740 (1095)
++|+|++|.|+.+..++.-+|.++.|+++.|.+...- ++..|++|+.|+||+|.+.. +..+-..|.+.++
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~--------~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE--------CVGWHLKLGNIKT 356 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh--------hhhhHhhhcCEee
Confidence 8999999999999999999999999999998776542 37789999999999986554 3334456778899
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc--ccCCCCCCCEEeccCCCCcc
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS--GISHLSRLKWLHLFDCIMLQ 818 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~L~~L~~L~L~~c~~l~ 818 (1095)
|.|++|.+.. + +.++.+-+|..||+++|+|..+.. .+++||-|+.|.|.+||.-.
T Consensus 357 L~La~N~iE~-----L------------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIET-----L------------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhh-----h------------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9998876321 1 124456789999999999997654 78999999999999998543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=1.9e-07 Score=109.77 Aligned_cols=178 Identities=28% Similarity=0.380 Sum_probs=91.6
Q ss_pred CCCCcceeecccCCCCccccCCCCCCc-cccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPEPSETP-NLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK- 641 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~- 641 (1095)
..+..++.|++.++......+....+. +|+.|++++|. +..+|..++.+++|+.|++++|. +..+|...+.++.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 334556777777664433333344442 67777777654 33444556677777777777643 444444333344444
Q ss_pred eeccCCcccCCCcc---ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 642 INCSECVNLSEFPR---ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 642 l~l~~c~~L~~~p~---~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
+.+++ +.+..+|. ....|++|.+++|.+..++..+.+++++..|.+.+|.. ..++..++.+++|+.|++++|.+.
T Consensus 191 L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccc
Confidence 22222 23333333 22235555555555555555555555555555544332 222444555556666666654332
Q ss_pred ccccccccccCccccCCCCCCEEEecCCCCCCCCCc
Q 047103 719 GKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPE 754 (1095)
Q Consensus 719 ~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 754 (1095)
.++. ++.+.+|+.|+++++.+...+|.
T Consensus 269 --------~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 --------SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --------cccc-ccccCccCEEeccCccccccchh
Confidence 2232 55556666666666555544443
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.50 E-value=9.9e-07 Score=103.68 Aligned_cols=175 Identities=18% Similarity=0.274 Sum_probs=105.9
Q ss_pred CCCCCcccchhHHHH---HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLVGLNSRIEQ---IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
...+++||.+..+.. +..++.. .....+.++|++|+||||||+.+++.....|.. +..+ . .+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~-~~~~~ 76 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----T-SGVKD 76 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----c-ccHHH
Confidence 445679999887666 7777654 345678899999999999999999987654421 1111 0 22222
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEE--EeCchH--HHH
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIII--TTRDKR--VLE 320 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~--v~~ 320 (1095)
+. +++.... .....+++.+|++|+++.. .+.+.|...+. .|..++| ||.+.. +..
T Consensus 77 ir-~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 LR-EVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HH-HHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 22 2222210 0111346789999999864 45666665543 3555555 344332 111
Q ss_pred h-cCcceEEEccCCChhHHHHHHHHhhhccCCCC-cchHHHHHHHHHHhCCCCccee
Q 047103 321 K-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCP-KDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 321 ~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
. ..-...+++++++.++..+++.+.+-...... .-..+....+++.++|.+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~al 194 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRAL 194 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 1 12236899999999999999987653211111 1224566788899999886554
No 47
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.48 E-value=9.5e-07 Score=105.76 Aligned_cols=274 Identities=11% Similarity=0.152 Sum_probs=173.5
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+|....+.|-|..-+..+... .+.|.+.|..++|.|||||+-.... ....=..+.|+. ..+.. .+..+.
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls-lde~d---ndp~rF 82 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS-LDESD---NDPARF 82 (894)
T ss_pred CCCCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee-cCCcc---CCHHHH
Confidence 445567788887666555432 4689999999999999999999887 344456788986 33221 456677
Q ss_pred HHHHHHHhcCCCccc--------------cCCCchHHHHhhhc--CCeEEEEecCCCCh------hhHHHHhcCCCCCCC
Q 047103 248 QKQILSTILSEKLEV--------------AGPNIPQFTKGRFR--CMKVLIVLDNVSKV------GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~--------------~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~ 305 (1095)
...++..++.-.... ....+...+..-+. .++..+||||..-. ..++.+.... .+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CC
Confidence 777777765322111 11112222333222 35889999998432 2366666554 36
Q ss_pred CCEEEEEeCchHHHHh--cCc-ceEEEcc----CCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeec
Q 047103 306 GSRIIITTRDKRVLEK--FGV-KKIYRVN----GLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMG 378 (1095)
Q Consensus 306 gsrIIiTTR~~~v~~~--~~~-~~~~~v~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 378 (1095)
+-..|||||..--+.. +.+ +...++. .++.+|+-++|..... . +--..-++.+.+...|-+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l--~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L--PLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C--CCChHHHHHHHhhcccHHHHHHHHH
Confidence 7789999998732211 111 1233333 4889999999977641 1 1122345677888889888888777
Q ss_pred cccccccccc--------------------ccCCCCHHHHHHhhhhhcccCCCCHHHHHHHhhccC-CCccceeccCCce
Q 047103 379 SSLYQKSKTH--------------------CFNDLTFEAKNIFLDIACFFEGEDKDFVMRVLDDFV-SPELDVLIDKSLV 437 (1095)
Q Consensus 379 ~~L~~~~~~~--------------------sy~~L~~~~k~~fl~~a~f~~~~~~~~v~~~l~~~~-~~~l~~L~~~sLi 437 (1095)
-.+++....+ -++.||++.|.-++.+|++.. +.-+-...+....+ .+-+++|..++|+
T Consensus 235 La~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe~L~~~gLF 313 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLEELERRGLF 313 (894)
T ss_pred HHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHHHHHhCCCc
Confidence 6666222221 678899999999999988832 12222222222222 2228999999988
Q ss_pred eEe----CCEEEeeHHHHHHHHHHHhhc
Q 047103 438 TIL----DNRLQMHDLLQEMGREIVRKE 461 (1095)
Q Consensus 438 ~~~----~~~~~mHdll~~~~~~i~~~e 461 (1095)
-+. .+.|+.|.+..|+-+.-...+
T Consensus 314 l~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 314 LQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eeeecCCCceeehhHHHHHHHHhhhccc
Confidence 754 678999999999987765543
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.6e-08 Score=108.01 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCCCcceeecccCCCCccccCC--CCCCccccEeeccCCccCcc-ccccccCCCCcceEeccCCCCCcccCCcccccccc
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPE--PSETPNLDRMNLWNCTGLAL-IPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSI 640 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L 640 (1095)
..|++|+.|+|+.|++..-... -..+++|+.|.|++|..... +......+|+|+.|+|.+|..+..-...
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~------- 241 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS------- 241 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-------
Confidence 3455566666665544332221 12445555555555554322 1122234455555555554311110000
Q ss_pred eeeccCCcccCCCccccCCceEEEecCCCCcccc--CccCCCCCCcEEeccCCCCCCc-cccc-----cCCCCCCCEEEc
Q 047103 641 KINCSECVNLSEFPRISGNVVELKLRHTPIEEVP--SSIDCLPDLETLEMSNCYSLKS-LSTN-----ICKLKSLRSLHL 712 (1095)
Q Consensus 641 ~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~Ls~~~~l~~-lp~~-----l~~L~~L~~L~L 712 (1095)
...+..|++|+|++|.+-..+ ..++.++.|..|+++.|.+... .|+. ...+++|++|++
T Consensus 242 -------------~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 242 -------------TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred -------------hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence 012234556666666666555 2355666666666666544321 1221 223455555555
Q ss_pred cCccc
Q 047103 713 AFCEQ 717 (1095)
Q Consensus 713 s~~~~ 717 (1095)
+.|++
T Consensus 309 ~~N~I 313 (505)
T KOG3207|consen 309 SENNI 313 (505)
T ss_pred ccCcc
Confidence 55443
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=1.1e-08 Score=109.97 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=68.8
Q ss_pred cCCCCCCcEEeccCCCCCC----ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCC-
Q 047103 677 IDCLPDLETLEMSNCYSLK----SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGS- 751 (1095)
Q Consensus 677 i~~l~~L~~L~Ls~~~~l~----~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~- 751 (1095)
+..-++|+++...+|..-. .+...+...+.|+.+.++.|.+.. ..+.-+...+..+++|+.|+|..|.++..
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 3445677777777655322 222335556777777777665433 44444555667777788888777765433
Q ss_pred ---CCcccCCCccccccccCC--Ccc-----cCccc-CCCCCCCeeeCCCCCCc-----ccCcccCCCCCCCEEeccCCC
Q 047103 752 ---LPESLGNLKALEFLSAAG--IIK-----IPRDI-GCLSSLVELDLSRNNFE-----SLPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 752 ---lp~~l~~L~~L~~L~l~~--~~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~L~~L~~L~L~~c~ 815 (1095)
+...++.+++|+.|+++. +.. +-..+ ...|+|+.|.|.+|.++ .+-..+...+.|..|+|++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 222333444444443222 110 11111 22455555555555554 122233445555555555554
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=2.2e-07 Score=94.27 Aligned_cols=38 Identities=34% Similarity=0.377 Sum_probs=14.6
Q ss_pred CCCCCeeeCCCCCCcccCc--ccCCCCCCCEEeccCCCCc
Q 047103 780 LSSLVELDLSRNNFESLPS--GISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 780 l~~L~~L~Ls~n~l~~lp~--~l~~L~~L~~L~L~~c~~l 817 (1095)
+++|++|+|++|+|..+.. .+..+++|+.|+|.+||..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 4556666666666554332 3455666666666666643
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=6.1e-07 Score=110.73 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=63.5
Q ss_pred CcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccc
Q 047103 683 LETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKAL 762 (1095)
Q Consensus 683 L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L 762 (1095)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|.+.+.+|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-------~iP~~~~~l~~L~~LdLs~N~lsg~iP~-------- 484 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-------NIPPSLGSITSLEVLDLSYNSFNGSIPE-------- 484 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-------cCChHHhCCCCCCEEECCCCCCCCCCch--------
Confidence 4555666666556666666666666666666655544 3444455566666666666655544443
Q ss_pred cccccCCCcccCcccCCCCCCCeeeCCCCCCc-ccCcccCCC-CCCCEEeccCCCCccc
Q 047103 763 EFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE-SLPSGISHL-SRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 763 ~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~L-~~L~~L~L~~c~~l~~ 819 (1095)
.++.+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+..
T Consensus 485 -------------~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 485 -------------SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred -------------HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 3444556666666666666 566655442 4566677777765544
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=8.9e-07 Score=100.32 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=83.4
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGL 738 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L 738 (1095)
+++.|+++++.++.+|. -.++|+.|.+++|..+..+|..+ .++|++|++++|..+. .+|. +|
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-------sLP~------sL 114 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-------GLPE------SV 114 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-------cccc------cc
Confidence 45566666666666662 22356666666666666666543 2456666666653222 2332 24
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc---ccCcccCCC-CCCCEEeccCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE---SLPSGISHL-SRLKWLHLFDC 814 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~L-~~L~~L~L~~c 814 (1095)
+.|++.++... .+..+| ++|+.|.+.+++.. .+|. .| ++|++|++++|
T Consensus 115 e~L~L~~n~~~-------------------~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c 166 (426)
T PRK15386 115 RSLEIKGSATD-------------------SIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGC 166 (426)
T ss_pred ceEEeCCCCCc-------------------ccccCc------chHhheecccccccccccccc---ccCCcccEEEecCC
Confidence 44444332210 112223 24566666443211 1221 12 57888888888
Q ss_pred CCcccCCCCCCCccceeecccCc--cCccc-CCCCcchhhhhhhhhhhhhhhc
Q 047103 815 IMLQSSLPELPPHLVMLDARNCK--RLQSL-PELPSCLEALDASVVETLSNHT 864 (1095)
Q Consensus 815 ~~l~~~lp~l~~sL~~L~l~~c~--~L~~l-p~~~~~l~~l~~~c~~~L~~~~ 864 (1095)
..+.. .+.+|.+|+.|+++++. .++.. +.+|..+...+.+|+. +....
T Consensus 167 ~~i~L-P~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl~L~f~n~lk-L~~~~ 217 (426)
T PRK15386 167 SNIIL-PEKLPESLQSITLHIEQKTTWNISFEGFPDGLDIDLQNSVL-LSPDV 217 (426)
T ss_pred CcccC-cccccccCcEEEecccccccccCcccccccccEechhhhcc-cCHHH
Confidence 86643 44588899988887653 22211 2455555555666765 54443
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.34 E-value=5.9e-06 Score=89.01 Aligned_cols=172 Identities=13% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCCccc--chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHH
Q 047103 172 YNGLVG--LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 172 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~ 249 (1095)
.+++++ .+..++.+.+++.. ...+.+.|+|.+|+||||||+.++++........+|+. +.... .-..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~-------~~~~ 82 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA-------QADP 82 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH-------HhHH
Confidence 445552 44566777776542 34578889999999999999999998655444455554 21111 0001
Q ss_pred HHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh---h-HHHHhcCCCC-CCCCCEEEEEeCch--------
Q 047103 250 QILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG---Q-LEGLIGGLDQ-FGLGSRIIITTRDK-------- 316 (1095)
Q Consensus 250 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~-------- 316 (1095)
.++ ..+.. .-+||+||++... . .+.+...+.. ...+.+||+||+..
T Consensus 83 ~~~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 83 EVL--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred HHH--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 111 11122 2379999997543 2 2233322211 12344788888743
Q ss_pred -HHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeee
Q 047103 317 -RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 317 -~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
.+...+.....+++++++.++...++...+-.... .--.+..+.+++.+.|+|..+.-+
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 22223333468899999999999999776532211 112345567777888888765543
No 54
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=2.8e-06 Score=82.59 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=78.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC 277 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 277 (1095)
+++.|.|+-|+|||||++.++.+.. .-+..+|+. .. +.. ....... + ..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~-------~~~-~~~~~~~---------~---~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FD-------DPR-DRRLADP---------D---LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cC-------CHH-HHHHhhh---------h---hHHHHHHhhcc
Confidence 6889999999999999999998765 234445554 11 111 1100000 0 12224444444
Q ss_pred CeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHh------cCcceEEEccCCChhHH
Q 047103 278 MKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEK------FGVKKIYRVNGLQFDVA 338 (1095)
Q Consensus 278 kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~v~~L~~~ea 338 (1095)
++.+|+||+|.....|......+-..++..+||+|+.....+.. .|....+++.+|+-.|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78899999999888888777766655667899999998877643 13335789999988763
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=2.5e-06 Score=98.69 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=101.0
Q ss_pred CCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|++..+++|.+.+...- -...+-+.|+|++|+||||+|++++++....| +...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~----- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV----- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc-----
Confidence 344678999999999988764321 02245688999999999999999999876543 2211
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCch-HHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCC
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIP-QFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 302 (1095)
...+....... ..... ..++..-.....+|+||+++... .+..+...+..
T Consensus 189 ----~~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 ----GSELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----hHHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 00111111000 00000 11111112346799999997531 13334333332
Q ss_pred C--CCCCEEEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhhhccCCCC-cchHHHHHHHHHHhCCC
Q 047103 303 F--GLGSRIIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCP-KDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 303 ~--~~gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~Gl 370 (1095)
. ..+.+||.||...+. ......+..++++..+.++..++|..++.+..... .++ ..+++.+.|.
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~ 327 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGA 327 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCC
Confidence 2 245678888875433 22223467899999999999999998876543322 233 3455555554
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1e-06 Score=108.79 Aligned_cols=93 Identities=26% Similarity=0.423 Sum_probs=84.0
Q ss_pred CceEEEecCCCCc-cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCC
Q 047103 659 NVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737 (1095)
Q Consensus 659 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~ 737 (1095)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+ .+|..+++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-------~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-------SIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-------CCchHHhcCCC
Confidence 3678999999998 789899999999999999999999999999999999999999998887 46777899999
Q ss_pred CCEEEecCCCCCCCCCcccCC
Q 047103 738 LRELQLMGCTKLGSLPESLGN 758 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~ 758 (1095)
|+.|+|++|.+.+.+|..+..
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCEEECcCCcccccCChHHhh
Confidence 999999999999988876543
No 57
>PTZ00202 tuzin; Provisional
Probab=98.31 E-value=4.4e-06 Score=93.83 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=118.9
Q ss_pred hhhccCCCCCCCC---ChHHHHHHHHHHHhhcccc----cccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEec
Q 047103 133 TSHLAGHESTKFR---NDALLIDKIVEDVLKNLEK----ITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGM 205 (1095)
Q Consensus 133 va~~~g~~~~~~~---~e~~~i~~iv~~v~~~l~~----~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~Gm 205 (1095)
|+...|| ..++. .-+-..+-.++...+.+.+ ....|.+...|+||++++.++...|...+....+++.|.|+
T Consensus 216 v~~vF~w-n~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~ 294 (550)
T PTZ00202 216 VASVFGW-NFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGF 294 (550)
T ss_pred HHHHHHH-HHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECC
Confidence 4556777 66664 1122244455666665522 12456677899999999999999997544345679999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh-----c-CCe
Q 047103 206 GGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF-----R-CMK 279 (1095)
Q Consensus 206 gGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr 279 (1095)
+|+|||||++.+..... ..+++.|. .+...+.+.++.+|+...... ...+.+.|.+.+ . +++
T Consensus 295 ~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~Grt 362 (550)
T PTZ00202 295 RGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNGET 362 (550)
T ss_pred CCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999997654 22555444 356889999999988633222 122223333332 2 556
Q ss_pred EEEEec--CCCChhh-HHHHhcCCCCCCCCCEEEEEeCchHHHHhc---CcceEEEccCCChhHHHHHHHH
Q 047103 280 VLIVLD--NVSKVGQ-LEGLIGGLDQFGLGSRIIITTRDKRVLEKF---GVKKIYRVNGLQFDVALEQFCN 344 (1095)
Q Consensus 280 ~LlVLD--dv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~---~~~~~~~v~~L~~~ea~~Lf~~ 344 (1095)
.+||+- +=.+..- ..+. -.+.....-|.|++----+.+-... ---..|-++.++.++|.++-.+
T Consensus 363 PVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 363 PLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred EEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 666654 2222221 1111 1122223446777654433331111 1125789999999999988654
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=3.5e-07 Score=92.83 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=19.5
Q ss_pred CCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccc-cCCCCcceEeccCCC
Q 047103 566 APKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYI-QNFNNLGNLSLEGCE 625 (1095)
Q Consensus 566 l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~L~~c~ 625 (1095)
+.+|+.|+|++|. ++.++.+..+++|++|++++|.+.. ++..+ ..+++|++|+|++|.
T Consensus 41 l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp -TT--EEE-TTS---S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS-
T ss_pred hcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCc
Confidence 4566777777774 3445566667777777777665543 22223 346666666666543
No 59
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.28 E-value=5.9e-06 Score=104.61 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=163.2
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC--C-CCHHHHHHH
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT--G-GGLEHLQKQ 250 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~--~-~~l~~l~~~ 250 (1095)
.++||+.+++.|...+..-......++.+.|..|||||+|+++|...+..++. .|+..--..... + ..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHH
Confidence 37999999999999998766566789999999999999999999998765521 111100000000 0 112222223
Q ss_pred HHHH-------------------hcCCCccc----------cC----------CC--------chHHHHhhh-cCCeEEE
Q 047103 251 ILST-------------------ILSEKLEV----------AG----------PN--------IPQFTKGRF-RCMKVLI 282 (1095)
Q Consensus 251 ll~~-------------------l~~~~~~~----------~~----------~~--------~~~~l~~~L-~~kr~Ll 282 (1095)
+..+ ++...... .+ .. ....+.... +.|+..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3222 22211110 00 00 011122222 3459999
Q ss_pred EecCC-CChhh----HHHHhcCCCCCC-CCCEEE--EEeCch--HHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCC
Q 047103 283 VLDNV-SKVGQ----LEGLIGGLDQFG-LGSRII--ITTRDK--RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRC 352 (1095)
Q Consensus 283 VLDdv-~~~~~----l~~l~~~~~~~~-~gsrII--iTTR~~--~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~ 352 (1095)
|+||+ |-... ++.++....-+. .-..|. .|.+.. .+...-.....+.+.+|+..+..+|.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999 43322 444443332000 001222 233332 1111122336899999999999999877653222
Q ss_pred CcchHHHHHHHHHHhCCCCcceeeeccccccccccc------------------------------ccCCCCHHHHHHhh
Q 047103 353 PKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH------------------------------CFNDLTFEAKNIFL 402 (1095)
Q Consensus 353 ~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~------------------------------sy~~L~~~~k~~fl 402 (1095)
....+..+.|+++..|+|+-+..+-..+....--. -.+.||...++++-
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23346778999999999999998877776642110 45678999999999
Q ss_pred hhhcccCCCCHHHHHHHhhccCCCc----cceeccCCceeEe--------CC---EEEeeHHHHHHHHHHH
Q 047103 403 DIACFFEGEDKDFVMRVLDDFVSPE----LDVLIDKSLVTIL--------DN---RLQMHDLLQEMGREIV 458 (1095)
Q Consensus 403 ~~a~f~~~~~~~~v~~~l~~~~~~~----l~~L~~~sLi~~~--------~~---~~~mHdll~~~~~~i~ 458 (1095)
..||+-..++.+.+..+.+.....+ ++.|.....+..+ .. +--.||.+|+.+-...
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 9999999999888887776544111 4444433333211 11 1146788877765544
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=2e-07 Score=97.74 Aligned_cols=123 Identities=23% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCC
Q 047103 703 KLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCL 780 (1095)
Q Consensus 703 ~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l 780 (1095)
..+.|++|+||+|.+ +.+..++.-+|.++.|+++.|.+...-. +..|++|+.|++++ +.++..+-..+
T Consensus 282 TWq~LtelDLS~N~I--------~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI--------TQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccch--------hhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhh
Confidence 345566666665432 2333444445566666666655543322 45555555555544 23344444567
Q ss_pred CCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcc--c--CCCCCCCccceeecccCc
Q 047103 781 SSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQ--S--SLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 781 ~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~--~--~lp~l~~sL~~L~l~~c~ 837 (1095)
.+.++|.|++|.++++. +++.|-+|..|++++|+.-+ . .+..+ |-|+.|.+.+||
T Consensus 352 GNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCC
Confidence 78899999999988876 67888899999999986321 1 12222 567778888887
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=5.4e-06 Score=94.09 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=107.2
Q ss_pred ccccce-eeccCCcccCCCccccCCceEEEecC-CCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEcc
Q 047103 636 FVSSIK-INCSECVNLSEFPRISGNVVELKLRH-TPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLA 713 (1095)
Q Consensus 636 ~l~~L~-l~l~~c~~L~~~p~~~~~L~~L~L~~-n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls 713 (1095)
.+..+. |.+++| .++.+|..+.+|++|.+++ +.++.+|..+ .++|+.|++++|..+..+|. +|+.|+++
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 356666 788888 8999999889999999987 6677888755 36899999999977777775 47777776
Q ss_pred CccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCC
Q 047103 714 FCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNF 793 (1095)
Q Consensus 714 ~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l 793 (1095)
.+... .+..+|. +|+.|.+.++..... ..+|. .-.++|+.|++++|..
T Consensus 121 ~n~~~-----~L~~LPs------sLk~L~I~~~n~~~~-------------------~~lp~--~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 121 GSATD-----SIKNVPN------GLTSLSINSYNPENQ-------------------ARIDN--LISPSLKTLSLTGCSN 168 (426)
T ss_pred CCCCc-----ccccCcc------hHhheeccccccccc-------------------ccccc--ccCCcccEEEecCCCc
Confidence 54321 2345554 355666543221000 00110 0126899999999987
Q ss_pred cccCcccCCCCCCCEEeccCCC--CcccCCCCCCCccceeecccCccC
Q 047103 794 ESLPSGISHLSRLKWLHLFDCI--MLQSSLPELPPHLVMLDARNCKRL 839 (1095)
Q Consensus 794 ~~lp~~l~~L~~L~~L~L~~c~--~l~~~lp~l~~sL~~L~l~~c~~L 839 (1095)
..+|..+. .+|+.|+++.|. .+......+|+++ .|++.+|-.+
T Consensus 169 i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 169 IILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 77775544 589999998763 2222234677888 8999888543
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.19 E-value=1.6e-05 Score=91.21 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=105.0
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCc-eEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEG-TCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~-~~~v~~v~~~~~~~~~l~~ 246 (1095)
|...++++|++..++.+..++..+ ..+.+.++|+.|+||||+|+++++.+... +.. .+++. ..+.... ....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~ 84 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKY 84 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhh
Confidence 344578999999999999988653 34457899999999999999999986533 222 22332 2111100 0000
Q ss_pred HHH--HHHHHhcCCCccccCCCchHHHHhhh---------cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEe
Q 047103 247 LQK--QILSTILSEKLEVAGPNIPQFTKGRF---------RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITT 313 (1095)
Q Consensus 247 l~~--~ll~~l~~~~~~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT 313 (1095)
+.. .....++.. ..........+++.+ ...+-+||+||++... ..+.|...+.......++|+||
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 85 LVEDPRFAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred hhcCcchhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 000 000000000 000000011122111 1234479999997542 2333433333334557788877
Q ss_pred Cch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 314 RDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 314 R~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
... .+...+ .....+++.+++.++..+++...+-..... --.+....++++++|.+-.
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 543 222222 223578899999999998888765432221 1245566778888776544
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=1.3e-05 Score=79.20 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=70.2
Q ss_pred ccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHh
Q 047103 176 VGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI 255 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l 255 (1095)
+|++..++++...+... ..+.+.|+|.+|+||||+|+++++.+...-..++++. ..+.... ......+.. .
T Consensus 1 ~~~~~~~~~i~~~~~~~---~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~~~-~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP---PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELFGH-F 71 (151)
T ss_pred CchHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHhhh-h
Confidence 47888888888887653 3567889999999999999999998753333344443 2211110 000000000 0
Q ss_pred cCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-----hhHHHHhcCCCCC---CCCCEEEEEeCchH
Q 047103 256 LSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-----GQLEGLIGGLDQF---GLGSRIIITTRDKR 317 (1095)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~l~~l~~~~~~~---~~gsrIIiTTR~~~ 317 (1095)
............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000011223346789999999853 2233333333221 36778888888653
No 64
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.18 E-value=1e-05 Score=97.67 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=110.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-----CC--ceEEEEecccccCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGG-----FE--GTCFVADVRRNSGT 240 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-----F~--~~~~v~~v~~~~~~ 240 (1095)
..++.+.||++++++|...|...- .....++-|+|++|.|||+.++.|.+++... .. .++++. ...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---- 826 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---- 826 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc----
Confidence 345789999999999998886521 1234577899999999999999999876432 12 123332 211
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCC---CchHHHHhhhc---CCeEEEEecCCCChh--h---HHHHhcCCCCCCCCCEE
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGP---NIPQFTKGRFR---CMKVLIVLDNVSKVG--Q---LEGLIGGLDQFGLGSRI 309 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~---~kr~LlVLDdv~~~~--~---l~~l~~~~~~~~~gsrI 309 (1095)
......+...|..+|...... .+. .....+...+. ....+||||+|+... + +-.|.... ...+++|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKL 903 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKL 903 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeE
Confidence 134556677777776433221 122 12223333331 224589999997543 1 32222211 1245666
Q ss_pred EE--EeCchH--------HHHhcCcceEEEccCCChhHHHHHHHHhhhcc-CCCC-cchHHHHHHHHHHhCCCCcceeee
Q 047103 310 II--TTRDKR--------VLEKFGVKKIYRVNGLQFDVALEQFCNYAFKE-NRCP-KDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 310 Ii--TTR~~~--------v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~-~~~~-~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
+| +|.+.+ +...++. ..+..++.+.++-.+++..++-.. .... +.++-+|+.++...|..-.||.++
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 55 333222 2222222 235679999999999999887432 1112 223333443333334445555544
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=2.7e-05 Score=88.25 Aligned_cols=176 Identities=15% Similarity=0.193 Sum_probs=110.5
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh------cCCCceEEEEecccccCCCCCHH
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS------GGFEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~------~~F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
.++++|-+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+- .+.|...|.. .. . ....+.
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~-~~i~v~ 76 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--K-KSIGVD 76 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--C-CCCCHH
Confidence 357889998899999888653 2346778999999999999999999752 2334333322 10 1 113333
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEec-CCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHH-Hhc-
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLD-NVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVL-EKF- 322 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD-dv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~- 322 (1095)
++. ++.+.+.... ...++|++||=| |..+...++.|+..+....+++.+|++|.+.+.+ ...
T Consensus 77 ~ir-~~~~~~~~~p--------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 77 DIR-NIIEEVNKKP--------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHH-HHHHHHhcCc--------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 322 2222221110 112345555444 4456667888888887777889999888766432 221
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcce
Q 047103 323 GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 323 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 374 (1095)
.-...+++..++.++..+.+.... .. . -.+.+..++.+++|.|..+
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~-~~--~---~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKY-ND--I---KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHh-cC--C---CHHHHHHHHHHcCCCHHHH
Confidence 224689999999999988776543 11 1 1233567889999988644
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.7e-05 Score=88.80 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=109.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~ 249 (1095)
...++++|-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ..+.+.....+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~----------~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT----------SNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCCCHHHH
Confidence 45678999999999999888653 2346678999999999999999998764211000 00000001111
Q ss_pred HHHHHhcCCCcccc-----CCCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-
Q 047103 250 QILSTILSEKLEVA-----GPNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK- 316 (1095)
Q Consensus 250 ~ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~- 316 (1095)
++.......-...+ .....+.+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 11111000000000 000001111111 2345689999998754 4667776666555666777776554
Q ss_pred HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 317 RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 317 ~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
.+.... +-...+++++++.++..+.+...+-.... .--.+.+..+++.++|.|-.
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 333322 23468999999999999888776643221 11234556788888887753
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=5e-05 Score=81.96 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCCcccchh-HHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHH
Q 047103 172 YNGLVGLNS-RIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQ 250 (1095)
Q Consensus 172 ~~~~vGr~~-~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ 250 (1095)
.++|++-.. .+..+..+.. + .....+.|+|..|+|||+||+++++....+...+.|+. . .+....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~----------~~~~~~ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-L----------QAAAGR 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-H----------HHhhhh
Confidence 455665543 3333333322 1 22356999999999999999999998766655566664 1 111111
Q ss_pred HHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh---hHH-HHhcCCCC-CCCCCEEEEEeCch---------
Q 047103 251 ILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG---QLE-GLIGGLDQ-FGLGSRIIITTRDK--------- 316 (1095)
Q Consensus 251 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~-~l~~~~~~-~~~gsrIIiTTR~~--------- 316 (1095)
+.. ..+.+. +--+||+||+.... .++ .+..-+.. ...|..||+|++..
T Consensus 84 ~~~-----------------~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 84 LRD-----------------ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred HHH-----------------HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 111 111111 22489999996431 222 22211111 12466799999843
Q ss_pred HHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCC
Q 047103 317 RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKG 369 (1095)
Q Consensus 317 ~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 369 (1095)
++...++....+++++++.++-.+++.+++....- .--.+...-+++.+.|
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~r 196 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCC
Confidence 33333334568999999999999999987754321 1113444556666554
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.11 E-value=2.4e-05 Score=88.86 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=104.2
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh-cCCCceEEEEecccccCCCCCHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS-GGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~-~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
|...++++|-+..++.|..++..+ ....+-++|++|+||||+|+++++.+. ..|...+.-.+. +.. .+...+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGIDVV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHHHH
Confidence 445578999999888888877643 344567999999999999999999863 333322111111 111 233322
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-C
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-G 323 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~ 323 (1095)
... ...+....... -.++.-++|||+++... ..+.|...+......+++|+++... .+.... .
T Consensus 82 r~~-i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 82 RNK-IKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHH-HHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 222 22111100000 01345689999997643 3344443333335567787776543 222211 1
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 324 VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 324 ~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
....+++++++.++..+.+...+-..+.. --.+....+++.++|-.
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 23578999999999998888776432221 11345667888888754
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.7e-07 Score=101.06 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=95.6
Q ss_pred CceEEEecCCCCcc-----ccCccCCCCCCcEEeccCCCCCCc-------------cccccCCCCCCCEEEccCcccccc
Q 047103 659 NVVELKLRHTPIEE-----VPSSIDCLPDLETLEMSNCYSLKS-------------LSTNICKLKSLRSLHLAFCEQLGK 720 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~Ls~~~~l~~-------------lp~~l~~L~~L~~L~Ls~~~~~~~ 720 (1095)
.|+.|+|+.|.+.. +-.-+.++..|+.|.|.+|.+... ....+..-+.|+++...+|.+-.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen- 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN- 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-
Confidence 56777888877761 222356678888888888765321 11224456778888887776543
Q ss_pred ccccccccCccccCCCCCCEEEecCCCCCCC----CCcccCCCccccccccCCCc-------ccCcccCCCCCCCeeeCC
Q 047103 721 EASNIKELPSSIENLEGLRELQLMGCTKLGS----LPESLGNLKALEFLSAAGII-------KIPRDIGCLSSLVELDLS 789 (1095)
Q Consensus 721 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~L~~L~~L~l~~~~-------~lp~~l~~l~~L~~L~Ls 789 (1095)
..-+.+...+...+.|+.+.+..|.+... +...+..+++|+.|++..+. .+...+..+++|+.|+++
T Consensus 172 --~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 172 --GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred --ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 22233444566677888888887765422 22334556666666555422 133344455566666666
Q ss_pred CCCCcc-----cCccc-CCCCCCCEEeccCCCCcccCCCC------CCCccceeecccCc
Q 047103 790 RNNFES-----LPSGI-SHLSRLKWLHLFDCIMLQSSLPE------LPPHLVMLDARNCK 837 (1095)
Q Consensus 790 ~n~l~~-----lp~~l-~~L~~L~~L~L~~c~~l~~~lp~------l~~sL~~L~l~~c~ 837 (1095)
+|.++. +-..+ ...|+|+.|.+.+|.......-. --|.|..|++++|.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 665541 11111 23556666666666433220000 02455666666655
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=1.7e-05 Score=94.59 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=111.2
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh--cCCCceEEEEecccccCC--CCCH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS--GGFEGTCFVADVRRNSGT--GGGL 244 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~--~~F~~~~~v~~v~~~~~~--~~~l 244 (1095)
|...++++|-+..++.|...+.... -...+.++|++|+||||+|+.+++.+. +.+...|+.+........ ..++
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 3445689999999899988887542 345678999999999999999999764 223333443311000000 0000
Q ss_pred HHHHHHHHHHhcCCCccccCCCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc-h
Q 047103 245 EHLQKQILSTILSEKLEVAGPNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD-K 316 (1095)
Q Consensus 245 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~ 316 (1095)
. .+... ...+....+.+.+. ...++-++|+|+++.. ..++.|...+....+...+|++|.. .
T Consensus 88 ~--------el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 88 L--------EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred E--------Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0 00000 00000001111111 1234568899999754 4577777666554555566665543 3
Q ss_pred HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 317 RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 317 ~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
.+.... .....+++.+++.++..+.+.+.+-..... --.+....|++.++|.+--
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRD 213 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 332222 234689999999999999998877443321 1235567788888887743
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.09 E-value=2.6e-05 Score=81.01 Aligned_cols=173 Identities=18% Similarity=0.204 Sum_probs=94.0
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc--CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME--LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
-|...+++||-+..++.+.-++... .++...-+-.||++|+||||||+.+++.....|. +.. . ..... ..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i~k---~~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAIEK---AG 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC--S---CH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhhhh---HH
Confidence 3456789999999999887666532 2245677889999999999999999998876663 121 1 00111 11
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCC--hhhHHHHhcCCCC--------CCCCC--------
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSK--VGQLEGLIGGLDQ--------FGLGS-------- 307 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~--------~~~gs-------- 307 (1095)
++. .++. .++ ++-+|.+|.+.. ..+-+.|.+...+ .++++
T Consensus 91 dl~-~il~--------------------~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 91 DLA-AILT--------------------NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHH-HHHH--------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHH-HHHH--------------------hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 111 1111 122 244666788854 3333333332211 12222
Q ss_pred ---EEEEEeCchHHHHhc--CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 308 ---RIIITTRDKRVLEKF--GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 308 ---rIIiTTR~~~v~~~~--~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
-|=-|||...+..-+ ...-+.+++..+.+|-.++..+.|-.-+ -+-..+.+.+|++++.|-|-
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChH
Confidence 233588875554332 1234678999999999999988763322 13345778899999999995
No 72
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=2.7e-05 Score=93.50 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
.|...++++|.+..++++.+++..-. +...+.+.|+|++|+||||+|+++++++. |+..- + +.. .. ....
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-l-nas---d~-r~~~- 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-L-NAS---DQ-RTAD- 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-E-ccc---cc-ccHH-
Confidence 34456789999999999999986532 12367899999999999999999999863 22211 1 111 11 1112
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh------hHHHHhcCCCCCCCCCEEEEEeCchH-HH
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG------QLEGLIGGLDQFGLGSRIIITTRDKR-VL 319 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~-v~ 319 (1095)
....++...... ......++-+||+|+++... .++.+...+. ..+..||+|+.+.. ..
T Consensus 80 ~i~~~i~~~~~~-------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 80 VIERVAGEAATS-------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHHhhcc-------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 222222221100 00011357799999997642 2444443333 23345666664432 11
Q ss_pred H-h-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 320 E-K-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 320 ~-~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
. . -.....++++.++.++....+...+....... -.+....|++.++|-.-
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLR 197 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 1 1 12346789999999999888877664433211 13456677777777443
No 73
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.07 E-value=3e-05 Score=95.93 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=98.4
Q ss_pred cCCCCCcccchhHHH---HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHH
Q 047103 169 TDSYNGLVGLNSRIE---QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
|...++++|.+..+. .+...+.. +....+.++|++|+||||||+.+++.....|. .+..+ . .++.
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~---~~i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L---AGVK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h---hhhH
Confidence 344567899988775 45555543 44566789999999999999999998765552 12110 0 1222
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhhh--cCCeEEEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEE--eCchH--
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGRF--RCMKVLIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIIT--TRDKR-- 317 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiT--TR~~~-- 317 (1095)
.+. +++.. ..+.+ .+++.+|||||++. ..+.+.|...+ ..|+.++|+ |.+..
T Consensus 92 dir-~~i~~----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 92 DLR-AEVDR----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFE 151 (725)
T ss_pred HHH-HHHHH----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhh
Confidence 211 11111 11111 24577999999964 45566676543 345555553 44431
Q ss_pred HHHhc-CcceEEEccCCChhHHHHHHHHhhhcc-----CCCCcchHHHHHHHHHHhCCC
Q 047103 318 VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKE-----NRCPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 318 v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~Gl 370 (1095)
+.... .-...+.+++|+.++..+++.+.+-.. .....--.+....+++++.|.
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 21111 123579999999999999988755310 111111234556677777775
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=6e-05 Score=91.06 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=110.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+...+++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+.+-..-. .. . .+++.....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR--L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~----~~-----~-~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR--LHHAYLFTGTRGVGKTTLSRIFAKALNCETG----VT-----S-QPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCccC----CC-----C-CCCcccHHH
Confidence 3456789999999999999886532 2456679999999999999999987532100 00 0 001111112
Q ss_pred HHHHHHhcCCCccccC-----CCchHHHHhh-----hcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAG-----PNIPQFTKGR-----FRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~-----~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+.+...-......++. .+..+.+.+. ...+.-++|||+++... .++.|+..+.......++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 2221110000000000 0000111111 12344578899998654 3777776665445677888888776
Q ss_pred HHH-Hh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC-cceee
Q 047103 317 RVL-EK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP-LALKV 376 (1095)
Q Consensus 317 ~v~-~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~ 376 (1095)
+-. .. ..-...+.++.++.++..+.+.+.+-.+.. .--.+..+.|++.++|-. -|+..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 432 22 122468999999999999998876633221 112355667888888854 34433
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.1e-05 Score=92.21 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-C-Cc-eEEEEe-------------
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-F-EG-TCFVAD------------- 233 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F-~~-~~~v~~------------- 233 (1095)
....++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. . .. -|..+.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 456789999999999998886532 24556899999999999999999976432 1 00 011100
Q ss_pred --cccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEE
Q 047103 234 --VRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRI 309 (1095)
Q Consensus 234 --v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrI 309 (1095)
+.. ... .++..+ +++...+. ..-..+++-++|+|++... ...+.|+..+.......++
T Consensus 91 iEidA-as~-~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDA-ASR-TKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecc-ccc-cCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 000 000 112221 22222110 0112356678999999754 4577777666554556676
Q ss_pred EEEeCch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 310 IITTRDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 310 IiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
|++|.+. .+...+ .-...|++++|+.++..+.+.+.+-... ..-..+....|++.++|.|-
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 6665544 444332 2247899999999999999877653221 11223556778899999775
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.05 E-value=6.6e-05 Score=85.51 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=105.2
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...++++|+++.++.+..++... ..+.+.|+|..|+||||+|+.+++.+........++. ... +.. .+...+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~-~~~~~~~ 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDE-RGIDVIR 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccc-cchHHHH
Confidence 344567999999999999988653 2445789999999999999999998643321112222 100 111 1222222
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-Cc
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-GV 324 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~ 324 (1095)
..+........ .....+-++|+|+++... ..+.|...+....+.+++|+++... .+.... ..
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 22211110000 001235588999986542 3444444444444556777776432 221111 12
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 325 KKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 325 ~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
...+++++++.++....+...+-.... .--.+....+++.++|.+--
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 246899999999998888877643322 11244566778888887644
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.1e-07 Score=99.84 Aligned_cols=155 Identities=22% Similarity=0.295 Sum_probs=88.9
Q ss_pred CCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccC--Ccccccccce-eeccCCcccCC-----CccccC
Q 047103 587 SETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFP--QNIHFVSSIK-INCSECVNLSE-----FPRISG 658 (1095)
Q Consensus 587 ~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp--~~i~~l~~L~-l~l~~c~~L~~-----~p~~~~ 658 (1095)
+.+..|+.|.|+|++.-..+...+..-.+|+.|||+.|+.++... --+.+++.|+ |+++.|-.... +..+..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 444555555555555444444445555555555555554443211 1122344444 44444433321 123445
Q ss_pred CceEEEecCCCC----ccccCccCCCCCCcEEeccCCCCCCc-cccccCCCCCCCEEEccCccccccccccccccCcccc
Q 047103 659 NVVELKLRHTPI----EEVPSSIDCLPDLETLEMSNCYSLKS-LSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIE 733 (1095)
Q Consensus 659 ~L~~L~L~~n~i----~~lp~~i~~l~~L~~L~Ls~~~~l~~-lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~ 733 (1095)
+|+.|+|+|+.= ..+..-...+++|..|||++|..+.. .-..|.+++.|++|.++.|.... |+.+ -.+.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~----~~l~ 360 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETL----LELN 360 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHe----eeec
Confidence 677888877531 23333346789999999999876653 33446788999999999986432 2221 1356
Q ss_pred CCCCCCEEEecCCC
Q 047103 734 NLEGLRELQLMGCT 747 (1095)
Q Consensus 734 ~l~~L~~L~L~~~~ 747 (1095)
..++|.+|++.||-
T Consensus 361 s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCV 374 (419)
T ss_pred cCcceEEEEecccc
Confidence 77889999988865
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=9.4e-06 Score=79.15 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=70.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC-----CCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc-ccCCCchH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG-----FEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE-VAGPNIPQ 269 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-----F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~ 269 (1095)
+-+++.|+|.+|+||||+++.+++....+ -..++|+. .... .....+.+.++.+++..... .....+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSS----RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHH----SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCC----CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34688999999999999999999976543 23344554 3222 36788899999997765544 22233344
Q ss_pred HHHhhhcCC-eEEEEecCCCCh-h--hHHHHhcCCCCCCCCCEEEEEeCc
Q 047103 270 FTKGRFRCM-KVLIVLDNVSKV-G--QLEGLIGGLDQFGLGSRIIITTRD 315 (1095)
Q Consensus 270 ~l~~~L~~k-r~LlVLDdv~~~-~--~l~~l~~~~~~~~~gsrIIiTTR~ 315 (1095)
.+.+.+... ..+||+|+++.. . .++.+..-.. ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 566666544 459999999776 2 3555543333 566778877765
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.04 E-value=7.7e-06 Score=84.98 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=36.4
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.||||+++++++...|........+.+.|+|.+|+|||||.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999964333567999999999999999999999988766
No 80
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00011 Score=88.03 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=108.9
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-... +.. ..+++.....
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~------~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT------STPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC------CCCCccCHHH
Confidence 3456789999999999999887542 346778999999999999999998753211 000 0001111111
Q ss_pred HHHHHHhcCCCccccCC--CchHHHHhh--------hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAGP--NIPQFTKGR--------FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~--~~~~~l~~~--------L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+.+...-...-...+.. .-.+.+++. ..+++-++|+|+|... ...+.|+..+.....+.++|++|.+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 11111000000000000 000111111 1245568899999764 35666666555444566788877765
Q ss_pred H-HHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 317 R-VLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 317 ~-v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
. +... ......++++.++.++..+.+.+.+-..+. .--.+....|++.++|-+-
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLR 214 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 3 2211 233468999999999999888776643322 1223455678888888653
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00014 Score=86.48 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=108.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC-------ceEEEEe--------
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE-------GTCFVAD-------- 233 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~-------~~~~v~~-------- 233 (1095)
|....++||-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+-..-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 445678999999999988877553 22457889999999999999999997632110 0011100
Q ss_pred ----ccccc-CCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCC
Q 047103 234 ----VRRNS-GTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLG 306 (1095)
Q Consensus 234 ----v~~~~-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 306 (1095)
+.+.. ....++..+.. +++... ..-+.+++-++|+|+++.. ..++.|...+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 00000 00012222211 111100 0012345668999999864 4577777666655556
Q ss_pred CEEEE-EeCchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 307 SRIII-TTRDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 307 srIIi-TTR~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.++|+ ||+.+.+.... .....+++.+++.++..+.+...+-..+.. --.+....|++.++|.+-
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66654 55555554433 233678999999999999998887443321 123445668888887653
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=9.1e-07 Score=104.36 Aligned_cols=195 Identities=21% Similarity=0.232 Sum_probs=112.2
Q ss_pred CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 565 KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
.+..++.+++..|.+......+..+.+|+.|++.+|.+... ...+..+++|++|+|++|.... +.. +..|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~~----l~~l---- 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LEG----LSTL---- 139 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-ccc----hhhc----
Confidence 34556666677765444344577778888888877664433 3336678888888888754322 111 1111
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccc-cccCCCCCCCEEEccCccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLS-TNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
..|+.|++.+|.|+.++. +..+++|+.+++++|.+...-+ . +..+.+|+.+.+.+|.+...
T Consensus 140 -------------~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--- 201 (414)
T KOG0531|consen 140 -------------TLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--- 201 (414)
T ss_pred -------------cchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc---
Confidence 125677777777776654 3447777777777766554433 2 35566777777776654331
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCC--CCCeeeCCCCCCcccCcccC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLS--SLVELDLSRNNFESLPSGIS 801 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~--~L~~L~Ls~n~l~~lp~~l~ 801 (1095)
..+..+..+..+++..|.+...-+ +..+. .|+.+++++|.+..++..+.
T Consensus 202 ------~~~~~~~~l~~~~l~~n~i~~~~~-----------------------l~~~~~~~L~~l~l~~n~i~~~~~~~~ 252 (414)
T KOG0531|consen 202 ------EGLDLLKKLVLLSLLDNKISKLEG-----------------------LNELVMLHLRELYLSGNRISRSPEGLE 252 (414)
T ss_pred ------cchHHHHHHHHhhcccccceeccC-----------------------cccchhHHHHHHhcccCcccccccccc
Confidence 112222333333444433221111 11122 37778888888877766677
Q ss_pred CCCCCCEEeccCCCC
Q 047103 802 HLSRLKWLHLFDCIM 816 (1095)
Q Consensus 802 ~L~~L~~L~L~~c~~ 816 (1095)
.+..+..|++.++..
T Consensus 253 ~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRI 267 (414)
T ss_pred ccccccccchhhccc
Confidence 777778887777654
No 83
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.00 E-value=7.8e-05 Score=86.74 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=90.9
Q ss_pred CCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|++..++++.+.+...- -...+-|.++|++|+|||++|++++++....| +...
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~----- 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV----- 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEee-----
Confidence 344678999999999988763311 02356688999999999999999999865432 2211
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchH-HHHhhhcCCeEEEEecCCCChh-------------h---HHHHhcCCCC
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQ-FTKGRFRCMKVLIVLDNVSKVG-------------Q---LEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~-------------~---l~~l~~~~~~ 302 (1095)
...+.... .+. ...... .+...-.....+|+|||++... . +..+...+..
T Consensus 198 ----~~~l~~~~---~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 198 ----GSELVQKF---IGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred ----hHHHhHhh---ccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 00111100 000 000101 1111112346789999997531 1 2233333322
Q ss_pred C--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhhhc
Q 047103 303 F--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAFK 348 (1095)
Q Consensus 303 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af~ 348 (1095)
+ ..+.+||.||...+.+.. -..+..++++..+.++..++|..++.+
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 2 234567777765443221 124568999999999999999987744
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.00 E-value=3.8e-05 Score=83.15 Aligned_cols=148 Identities=16% Similarity=0.296 Sum_probs=89.9
Q ss_pred CCCCCcccchhHHHH---HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLVGLNSRIEQ---IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
...+++||-+..+.+ |.+++.. +....+.+||++|.||||||+.+.+.-+.+ ...||. ..... .+...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~--Syrfve-lSAt~---a~t~d 205 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVE-LSATN---AKTND 205 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEE-Eeccc---cchHH
Confidence 334566666554433 2333332 567778899999999999999999864433 134554 22111 22222
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCC--ChhhHHHHhcCCCCCCCCCEEEE--EeCchHH---H
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVS--KVGQLEGLIGGLDQFGLGSRIII--TTRDKRV---L 319 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v---~ 319 (1095)
+ +.++++-. -...+..+|..|.+|.|. +..|-+.+++. ...|+-++| ||.+... .
T Consensus 206 v-R~ife~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 V-RDIFEQAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred H-HHHHHHHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 2 22322211 112356678999999995 44555555443 457777776 7777643 1
Q ss_pred HhcCcceEEEccCCChhHHHHHHHH
Q 047103 320 EKFGVKKIYRVNGLQFDVALEQFCN 344 (1095)
Q Consensus 320 ~~~~~~~~~~v~~L~~~ea~~Lf~~ 344 (1095)
..+.-..++.++.|+.++-..++.+
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHH
Confidence 1233457899999999999888877
No 85
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=7.2e-06 Score=68.23 Aligned_cols=58 Identities=33% Similarity=0.461 Sum_probs=43.2
Q ss_pred CceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcc
Q 047103 659 NVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCE 716 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~ 716 (1095)
+|+.|++++|.++.+|. .+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56778888888888775 46778888888888777766656667777777777777764
No 86
>PRK09087 hypothetical protein; Validated
Probab=97.99 E-value=7.3e-05 Score=80.07 Aligned_cols=136 Identities=11% Similarity=0.101 Sum_probs=82.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
.+.+.|||..|+|||+|+++++.... ..|+.. ..+..++... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~----------------~~---- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA----------------AA---- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh----------------hh----
Confidence 45689999999999999999887632 224431 1111122111 11
Q ss_pred CCeEEEEecCCCCh----hhHHHHhcCCCCCCCCCEEEEEeCc---------hHHHHhcCcceEEEccCCChhHHHHHHH
Q 047103 277 CMKVLIVLDNVSKV----GQLEGLIGGLDQFGLGSRIIITTRD---------KRVLEKFGVKKIYRVNGLQFDVALEQFC 343 (1095)
Q Consensus 277 ~kr~LlVLDdv~~~----~~l~~l~~~~~~~~~gsrIIiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~Lf~ 343 (1095)
+ -+|++||+... +.+-.+..... ..|..||+|++. +++...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999532 22333332222 346679998873 3445555566899999999999999998
Q ss_pred HhhhccCCCCcchHHHHHHHHHHhCCCCcce
Q 047103 344 NYAFKENRCPKDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 344 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 374 (1095)
+++-...- .--++...-|++.+.|..-++
T Consensus 164 ~~~~~~~~--~l~~ev~~~La~~~~r~~~~l 192 (226)
T PRK09087 164 KLFADRQL--YVDPHVVYYLVSRMERSLFAA 192 (226)
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhhhhHHHH
Confidence 88733211 112455556666666555443
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=9.9e-05 Score=88.11 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=110.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-CceEEEEecccccCCCCCHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-EGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+...+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+-..= +.. ......+++...-
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~------~g~~~~PCG~C~s 83 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE------GGITAQPCGQCRA 83 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc------ccCCCCCCcccHH
Confidence 3456789999999999999987542 345678999999999999999998763210 000 0000000111111
Q ss_pred HHHHHHHhcCCCccccC-----CCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeC-
Q 047103 248 QKQILSTILSEKLEVAG-----PNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTR- 314 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~-----~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR- 314 (1095)
.+.|...-......++. .+..+.+.+. ..++.-++|+|+++.. ...+.|+..+.....+.++|++|.
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 22221110000000000 0000111111 1344568999999765 457777777665455666555554
Q ss_pred chHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcce
Q 047103 315 DKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 315 ~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 374 (1095)
...+...+ .-...|.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-.
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 44444332 223688999999999998887765332211 12344567889999988543
No 88
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00022 Score=81.69 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=123.5
Q ss_pred CCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCc--eEEEEecccccCCCCCHHHH
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEG--TCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~--~~~v~~v~~~~~~~~~l~~l 247 (1095)
.++.+.+|+++++++...|..-- +....-+.|+|..|.|||+.++.+++++...... ++++. .... ....++
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~----~t~~~i 89 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLEL----RTPYQV 89 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeC----CCHHHH
Confidence 34559999999999998876532 1223348899999999999999999988665433 45653 3222 567788
Q ss_pred HHHHHHHhcCC-CccccCCCchHHHHhhhc--CCeEEEEecCCCChhh-----HHHHhcCCCCCCCCCEEEE--EeCchH
Q 047103 248 QKQILSTILSE-KLEVAGPNIPQFTKGRFR--CMKVLIVLDNVSKVGQ-----LEGLIGGLDQFGLGSRIII--TTRDKR 317 (1095)
Q Consensus 248 ~~~ll~~l~~~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrIIi--TTR~~~ 317 (1095)
...|+.+++.. .......+..+.+.+.+. ++.+++|||+++.... +-.|....... .++|++ .+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 88998887522 112233334455666654 4789999999976432 33443332222 455443 444443
Q ss_pred HHHh--------cCcceEEEccCCChhHHHHHHHHhh---hccCCCCcchHHHHHHHHHHhCC-CCcceeee
Q 047103 318 VLEK--------FGVKKIYRVNGLQFDVALEQFCNYA---FKENRCPKDLIGHSWRVVRYAKG-NPLALKVM 377 (1095)
Q Consensus 318 v~~~--------~~~~~~~~v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~G-lPLal~~l 377 (1095)
+... ++.. .+..++-+.+|-.+.+..++ |......++..+++..++..-+| .-.|+.++
T Consensus 168 ~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 168 FLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 3222 2332 36778888888888887765 55555555555666665555554 44454444
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0002 Score=85.65 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=105.1
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC---------------------CCce
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG---------------------FEGT 228 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---------------------F~~~ 228 (1095)
...+++||-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45678999999999999888653 234567899999999999999999875421 1111
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCC
Q 047103 229 CFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLG 306 (1095)
Q Consensus 229 ~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 306 (1095)
..+. . ... .++..+ ++++..+.. .-..+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieid-a---as~-~gvd~i-r~ii~~~~~---------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID-A---ASR-TGVEET-KEILDNIQY---------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee-c---ccc-cCHHHH-HHHHHHHHh---------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 0 000 122211 122211100 012345668999999754 4466776666554456
Q ss_pred CEEEEEeCch-HHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 307 SRIIITTRDK-RVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 307 srIIiTTR~~-~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
.++|++|.+. .+... ..-...+++++++.++..+.+...+-..+ . .--.+....+++.++|-+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i-~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I-NSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHcCCCH
Confidence 6666555443 34423 22347899999999998877776542222 1 122344557788888754
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.93 E-value=0.00012 Score=78.23 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=89.8
Q ss_pred HhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccC
Q 047103 187 PLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAG 264 (1095)
Q Consensus 187 ~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~ 264 (1095)
..+....+.....+-|||..|.|||.|.+++++.+..... .++|+. .......+...+...
T Consensus 24 ~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~------ 86 (219)
T PF00308_consen 24 KAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG------ 86 (219)
T ss_dssp HHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT------
T ss_pred HHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc------
Confidence 3343333234556789999999999999999998765443 344543 334555555544331
Q ss_pred CCchHHHHhhhcCCeEEEEecCCCChh---hHH----HHhcCCCCCCCCCEEEEEeCch---------HHHHhcCcceEE
Q 047103 265 PNIPQFTKGRFRCMKVLIVLDNVSKVG---QLE----GLIGGLDQFGLGSRIIITTRDK---------RVLEKFGVKKIY 328 (1095)
Q Consensus 265 ~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~----~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~ 328 (1095)
....+++.++.-. +|++|||+... .|+ .+...+. ..|-+||+|++.. ++...+...-++
T Consensus 87 --~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~ 161 (219)
T PF00308_consen 87 --EIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVV 161 (219)
T ss_dssp --SHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEE
T ss_pred --cchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchh
Confidence 1222555555433 67889996532 122 1221111 3466899999544 233344456789
Q ss_pred EccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCC
Q 047103 329 RVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKG 369 (1095)
Q Consensus 329 ~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 369 (1095)
++++++.++..+++.++|-...-. --++++.-+++.+.+
T Consensus 162 ~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 162 ELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRR 200 (219)
T ss_dssp EE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcC
Confidence 999999999999999888543221 123444555555544
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00023 Score=84.26 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=105.4
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC----CC-----------------c
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG----FE-----------------G 227 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~----F~-----------------~ 227 (1095)
|...+++||.+...+.+...+..+. -...+.++|++|+||||+|+.+++.+... +. .
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~--l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS--ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 4456789999888888887776432 23567899999999999999999875321 00 0
Q ss_pred eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCC
Q 047103 228 TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 228 ~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 305 (1095)
...+. . +.. .++..+. ++...... ....+++-++|+|+++.. .+.+.|+..+.....
T Consensus 88 v~el~---a-a~~-~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 88 VIELD---A-ASN-RGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred cEEEe---C-ccc-CCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11110 0 000 2222221 22211110 012245668999999754 345666666554334
Q ss_pred CCEEEEEeCc-hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCC-CCcceeeec
Q 047103 306 GSRIIITTRD-KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKG-NPLALKVMG 378 (1095)
Q Consensus 306 gsrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G-lPLal~~lg 378 (1095)
...+|++|.+ ..+.... .....+++.+++.++....+...+-.... .--.+....|+++++| ++.|+..+-
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4454444443 3343332 23468999999999988888777643221 1123455667776654 455554443
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.93 E-value=0.00015 Score=78.31 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
..+.+.|+|+.|+|||+||+++++....+-..+.|+. +... .....+ +.+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~~--------------------~~~~~ 95 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVPE--------------------VLEGM 95 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhHH--------------------HHHHh
Confidence 3467889999999999999999998765544455654 1110 000001 11111
Q ss_pred cCCeEEEEecCCCCh---hhHHH----HhcCCCCCCCC-CEEEEEeCch---------HHHHhcCcceEEEccCCChhHH
Q 047103 276 RCMKVLIVLDNVSKV---GQLEG----LIGGLDQFGLG-SRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVA 338 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~---~~l~~----l~~~~~~~~~g-srIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea 338 (1095)
.. --+|++||+... .+|+. +..... ..| .++|+||+.. ++...+....+++++++++++-
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 11 137889999653 23332 221111 123 3789998754 3444455567999999999999
Q ss_pred HHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 339 LEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 339 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.+++.++|-...- .--++...-+++.+.|-.-
T Consensus 173 ~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 173 LQALQLRARLRGF--ELPEDVGRFLLKRLDREMR 204 (235)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHH
Confidence 9999876643211 1123455566666665443
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.92 E-value=0.00018 Score=83.36 Aligned_cols=182 Identities=13% Similarity=0.138 Sum_probs=109.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC----CC-----------------c
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG----FE-----------------G 227 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~----F~-----------------~ 227 (1095)
|...++++|.+..++.+.+.+..+ .-...+-++|++|+||||+|+.+...+... ++ .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345678999999999999988653 234577899999999999999999876421 11 0
Q ss_pred eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCC
Q 047103 228 TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 228 ~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 305 (1095)
..++... .. .+... .+++...+... -..+++-++|+|+++.. ...+.+...+....+
T Consensus 88 ~~~~~~~----~~-~~~~~-~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 88 VIEIDAA----SN-NGVDD-IREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred EEEeecc----cc-CCHHH-HHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 1111100 00 11111 11222221100 01234558889998654 446666666654455
Q ss_pred CCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 306 GSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 306 gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
...+|++|.+.+ +...+ .....+++++++.++..+.+...+-..... --.+.+..+++.++|.|..+.
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~ 216 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDAL 216 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHH
Confidence 667777765554 33322 223578899999999988888766433221 113566778888998886543
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1e-07 Score=100.04 Aligned_cols=172 Identities=22% Similarity=0.318 Sum_probs=110.8
Q ss_pred CceEEEecCCCCc--cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCC
Q 047103 659 NVVELKLRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLE 736 (1095)
Q Consensus 659 ~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~ 736 (1095)
.+++|+|+.+.|+ .+..-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.|+-.... .+ .--+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--~~---~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--AL---QLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--HH---HHHHHhhh
Confidence 4677778777776 33333566777888888887777666666777778888888877544321 11 11256677
Q ss_pred CCCEEEecCCCCCCCCCcc-cCC-CccccccccCCCcc------cCcccCCCCCCCeeeCCCCC-Cc-ccCcccCCCCCC
Q 047103 737 GLRELQLMGCTKLGSLPES-LGN-LKALEFLSAAGIIK------IPRDIGCLSSLVELDLSRNN-FE-SLPSGISHLSRL 806 (1095)
Q Consensus 737 ~L~~L~L~~~~~~~~lp~~-l~~-L~~L~~L~l~~~~~------lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~L~~L 806 (1095)
.|..|+|+.|......-.. ..+ -+.|..|++++... +..-...+++|..||||+|. ++ .+-..+.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 7888888877755432111 111 13455555555321 22223578999999999984 33 333457789999
Q ss_pred CEEeccCCCCcccCCCCC------CCccceeecccCcc
Q 047103 807 KWLHLFDCIMLQSSLPEL------PPHLVMLDARNCKR 838 (1095)
Q Consensus 807 ~~L~L~~c~~l~~~lp~l------~~sL~~L~l~~c~~ 838 (1095)
++|.++.|..+ +|+. .|+|.+|++.+|-+
T Consensus 341 ~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcCC---ChHHeeeeccCcceEEEEeccccC
Confidence 99999999753 3331 37999999999853
No 95
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=1.2e-05 Score=66.84 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=48.9
Q ss_pred CcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCC
Q 047103 567 PKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCE 625 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 625 (1095)
++|++|+|++|++....+. |.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5788999999955443333 7899999999999988877777889999999999999875
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00017 Score=87.16 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=105.4
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+-..-... + .+++.....
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~---------~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-G---------EPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-C---------CCCcccHHH
Confidence 345678999999999999998753 2345788999999999999999998653210000 0 000000111
Q ss_pred HHHHHHhcCCCccccC--CCchHHHHhh--------hcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAG--PNIPQFTKGR--------FRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~--~~~~~~l~~~--------L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+.+...-.......+. ..-.+.+++. ..+++-++|+|+++... ..+.|+..+.......++|++|.+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 1110000000000000 0000011111 12455688999997654 3555555544334556777777554
Q ss_pred H-HHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 317 R-VLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 317 ~-v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
. +... .+....+++..++.++..+.+.+.+-..+. .--.+....|++.++|.+.-
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHH
Confidence 3 2222 122356788899999998888776633222 11234567888888887643
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.90 E-value=1.3e-05 Score=90.13 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=61.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccC-------CCch
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAG-------PNIP 268 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-------~~~~ 268 (1095)
-...+|+|++|+||||||+.+|+.+.. +|+.++|+..+++.. ..+.+++++++..+-....+... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998754 799999998776632 36778888886432211111100 0011
Q ss_pred HHHHhh-hcCCeEEEEecCCCChhh
Q 047103 269 QFTKGR-FRCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 269 ~~l~~~-L~~kr~LlVLDdv~~~~~ 292 (1095)
+..+.. -.+++++|++|++.....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHH
Confidence 111111 357899999999965544
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=97.86 E-value=0.00025 Score=76.61 Aligned_cols=144 Identities=14% Similarity=0.225 Sum_probs=84.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
...+.|||..|+|||.||+++++.+..+-..++|+. . ..+.... ..+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~----------~~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-L----------AELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-H----------HHHHhhh-----------------HHHHHhhh
Confidence 367889999999999999999998765444566664 1 1111110 01333333
Q ss_pred CCeEEEEecCCCCh---hhHHH-HhcCCCC-CCCCCEEEEEeCchH---------HHHhcCcceEEEccCCChhHHHHHH
Q 047103 277 CMKVLIVLDNVSKV---GQLEG-LIGGLDQ-FGLGSRIIITTRDKR---------VLEKFGVKKIYRVNGLQFDVALEQF 342 (1095)
Q Consensus 277 ~kr~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~ea~~Lf 342 (1095)
+-. +||+||+... .+|+. +..-+.. ...|.+||+|++... +...++...++++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 223 6788999632 23332 2222211 134668888887432 2223334468999999999999999
Q ss_pred HHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 343 CNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 343 ~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
..++....-. --.+...-+++++.|-.
T Consensus 176 ~~ka~~~~~~--l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 176 QLRASRRGLH--LTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhcCCCH
Confidence 8776443211 11355556666665543
No 99
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=9.6e-05 Score=86.08 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=107.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC---ceEEEEecccccCCCCCHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE---GTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~---~~~~v~~v~~~~~~~~~l~ 245 (1095)
|...+++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+-..-. ..|..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C------------- 78 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC------------- 78 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC-------------
Confidence 3456789999999999988887532 2346789999999999999999987542210 001111
Q ss_pred HHHHHHHHHhcCCCccc-----cCCCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe
Q 047103 246 HLQKQILSTILSEKLEV-----AGPNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT 313 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 313 (1095)
.-...+.......-... .+.+..+.+.+. ..++.-++|+|+++.. ..++.|+..+........+|.+|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 00111111100000000 000011111111 2345668999999754 45778777665433445555444
Q ss_pred -CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 314 -RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 314 -R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
....+.... .-...|.+..++.++..+.+.+.+-..+. .--.+....|++.++|-+-
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 444443332 22357999999999988888776643221 1124556788899988773
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.85 E-value=0.00029 Score=73.49 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=89.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC---------------------CCceEEEEecccccCCCCCHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG---------------------FEGTCFVADVRRNSGTGGGLEHLQKQILSTI 255 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~---------------------F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l 255 (1095)
...+.++|+.|+||||+|+.+.+.+-.. +....++... ... .+...+. ++...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~-~~~~~i~-~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS-IKVDQVR-ELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc-CCHHHHH-HHHHHH
Confidence 3678899999999999999999986431 1111222100 000 1221111 122221
Q ss_pred cCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-CcceEEEcc
Q 047103 256 LSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-GVKKIYRVN 331 (1095)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~ 331 (1095)
.. .-..+.+-++|+|+++... ..+.|+..+....+.+.+|++|++. .+.... .....+++.
T Consensus 89 ~~---------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 89 SR---------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred cc---------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 10 0012346688999997643 4666666665555667777777654 332222 223689999
Q ss_pred CCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 332 GLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 332 ~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
+++.++..+.+..+ + . -.+.+..+++.++|.|..
T Consensus 154 ~~~~~~~~~~l~~~--g---i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 154 PLSEEALLQWLIRQ--G---I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCHHHHHHHHHHc--C---C---CHHHHHHHHHHcCCCccc
Confidence 99999998888776 1 1 135677899999998864
No 101
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00044 Score=79.29 Aligned_cols=200 Identities=14% Similarity=0.080 Sum_probs=111.0
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc-C-CCceEEEEecccccCCCCCHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG-G-FEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~-~-F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
.|....+++|-+...+.+.+.+..+. -...+.++|+.|+||||+|..+++.+-. . ......-... ..... .+-.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r--l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~-~~~c 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR--LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAI-DPDH 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccC-CCCC
Confidence 44566789999999999998887642 3456889999999999999999987532 1 1100000000 00000 0001
Q ss_pred HHHHHHHHHhcCCCccc-----c-C----CCc-hHHH---Hhhhc-----CCeEEEEecCCCCh--hhHHHHhcCCCCCC
Q 047103 246 HLQKQILSTILSEKLEV-----A-G----PNI-PQFT---KGRFR-----CMKVLIVLDNVSKV--GQLEGLIGGLDQFG 304 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~-----~-~----~~~-~~~l---~~~L~-----~kr~LlVLDdv~~~--~~l~~l~~~~~~~~ 304 (1095)
...+.+...-...-... + + ..+ .+.+ .+.+. +.+.++|+||++.. ...+.|+..+....
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 11121111100000000 0 0 000 1122 22222 34668999999754 34566655554444
Q ss_pred CCCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeee
Q 047103 305 LGSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 305 ~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
.+..+|++|.+.+ +.... .-...+.+.+++.++..+++...... .. .+....++..++|.|+....+
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5667777777664 33222 23468999999999999999876411 11 122257889999999865443
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00017 Score=86.29 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=104.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. . .+++-....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r--l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~-----~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK--LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G-----DCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C-----CCCcccHHH
Confidence 4456789999999999998886532 246788999999999999999998763210 110 0 001111112
Q ss_pred HHHHHHhcCCCccccCC-----CchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe-Cc
Q 047103 249 KQILSTILSEKLEVAGP-----NIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT-RD 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~-----~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~ 315 (1095)
+.+.......-...++. +..+.+.+. ...++-++|+|+++.. ..++.|+..+........+|++| ..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 22211100000000000 000111111 1122335999999763 44666665554434455665555 43
Q ss_pred hHHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 316 KRVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 316 ~~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..+... ......+++.+++.++....+...+-.... .--.+.+..+++.++|-+-
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 344332 223468899999999999888776533221 1113456678888888553
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00027 Score=81.78 Aligned_cols=177 Identities=11% Similarity=0.114 Sum_probs=105.2
Q ss_pred CCCcccchhHHHHHHHhhhccCC-------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC------------------
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELS-------DTVQIVGIWGMGGIGKITLATAIFNQFSGGFE------------------ 226 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~------------------ 226 (1095)
.++++|-+..++.+...+..... .-.+-+.++|+.|+||||+|+.++..+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35788999999999998876420 13567889999999999999999986532211
Q ss_pred --ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCC
Q 047103 227 --GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQ 302 (1095)
Q Consensus 227 --~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~ 302 (1095)
...++.- .... .++.++. ++.+.+.. .-..+++-++|+|+++... ..+.|+..+..
T Consensus 84 hpD~~~i~~---~~~~-i~i~~iR-~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAP---EGLS-IGVDEVR-ELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEecc---cccc-CCHHHHH-HHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 1111110 0000 1122211 11111110 0012334477779997643 34556555554
Q ss_pred CCCCCEEEEEeCch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 303 FGLGSRIIITTRDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 303 ~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
..++..+|++|.+. .+...+ .-...+.++.++.++..+.+.... + . ..+.+..++..++|.|....
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~----~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V----DPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C----CHHHHHHHHHHcCCCHHHHH
Confidence 45667777776664 344332 224689999999999998886432 1 1 13456778999999986543
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00021 Score=81.20 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=88.5
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
.|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| ..+. ... .....+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i 84 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFV 84 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHH
Confidence 3455678999999999999988753 3356777899999999999999999764322 2222 111 112222
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh---hhHHHHhcCCCCCCCCCEEEEEeCchHHH-Hhc-
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV---GQLEGLIGGLDQFGLGSRIIITTRDKRVL-EKF- 322 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~- 322 (1095)
...+...... ..+...+-++|+||++.. ...+.+...+.....+.++|+||.....+ ..+
T Consensus 85 ~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 85 RNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 2222111100 001123457889999755 22233333233345677899888754321 111
Q ss_pred CcceEEEccCCChhHHHHHHHH
Q 047103 323 GVKKIYRVNGLQFDVALEQFCN 344 (1095)
Q Consensus 323 ~~~~~~~v~~L~~~ea~~Lf~~ 344 (1095)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 2224677888888888777654
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00044 Score=81.63 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=107.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC---------------------CCc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG---------------------FEG 227 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---------------------F~~ 227 (1095)
|...+++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-.. +..
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 3456789999999998988876532 23578899999999999999998854211 111
Q ss_pred eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCC
Q 047103 228 TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 228 ~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 305 (1095)
+..+.. +.. .++..+. ++++..... -..+++-++|+|++... ...+.|+..+....+
T Consensus 87 v~eida----as~-~~vddIR-~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 87 VIEIDA----ASN-TSVDDIK-VILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEEec----ccC-CCHHHHH-HHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 111110 001 2222221 122111100 01234557999999654 346666666655556
Q ss_pred CCEEEEEeC-chHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 306 GSRIIITTR-DKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 306 gsrIIiTTR-~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..++|++|. .+.+...+ .....+++..++.++..+.+...+-..+.. --.+....|++.++|-+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 677776654 34444332 234688999999999998888776443221 123445678888887664
No 106
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.79 E-value=2.3e-05 Score=84.64 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=60.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHHHHHHHHHH-----hcCCCccc--cCCCc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEHLQKQILST-----ILSEKLEV--AGPNI 267 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-----l~~~~~~~--~~~~~ 267 (1095)
.-..++|.|++|+|||||++.+|+.+.. +|+.++|+..+.+. +.++.++++.+... ++...... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3457899999999999999999998643 68999999876543 25788889888333 22211110 00011
Q ss_pred hHHHHh-hhcCCeEEEEecCCCChh
Q 047103 268 PQFTKG-RFRCMKVLIVLDNVSKVG 291 (1095)
Q Consensus 268 ~~~l~~-~L~~kr~LlVLDdv~~~~ 291 (1095)
....+. +-.++++++++|++....
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhh
Confidence 111222 124789999999996543
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00024 Score=83.08 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=108.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|...++++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... .....|...+.+ +.+.-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~ 85 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECE 85 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCH
Confidence 3456789999998888888886532 23457899999999999999999976431 111111110000 011112
Q ss_pred HHHHHHHHhcCCCccccC-----CCchHHHHhhh-----cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe-
Q 047103 247 LQKQILSTILSEKLEVAG-----PNIPQFTKGRF-----RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT- 313 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT- 313 (1095)
..+.+.......-...++ .+....+.+.+ .+.+-++|+|+++.. ..++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 222222110000000000 01111122222 234568899999754 35667766665555667766655
Q ss_pred CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 314 RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 314 R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
+...+.... .....+++++++.++..+.+...+-.... .--.+.+..+++.++|.+-
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 444444332 12357889999999988888766522211 1224566778888888664
No 108
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.79 E-value=0.00023 Score=87.44 Aligned_cols=174 Identities=14% Similarity=0.067 Sum_probs=97.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc--CC---CceEEEEecccccCCCCC
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG--GF---EGTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~--~F---~~~~~v~~v~~~~~~~~~ 243 (1095)
+...++++|.+..++.+.+.+.. .....+.|+|++|+||||||+.+++.... .+ ...-|+..-.... . .+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~-~d 224 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-R-WD 224 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-c-CC
Confidence 44557899999999988777643 33557999999999999999999886531 12 1223443111000 0 11
Q ss_pred HHHHHHHH---------------HHHhcCCC-------------ccccC-----CCchHHHHhhhcCCeEEEEecCCCCh
Q 047103 244 LEHLQKQI---------------LSTILSEK-------------LEVAG-----PNIPQFTKGRFRCMKVLIVLDNVSKV 290 (1095)
Q Consensus 244 l~~l~~~l---------------l~~l~~~~-------------~~~~~-----~~~~~~l~~~L~~kr~LlVLDdv~~~ 290 (1095)
...+...+ +...+... .-.++ ...+..+.+.+.+++++++.|+.|..
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 11111111 11111000 00011 11244566677778888887766543
Q ss_pred h--hHHHHhcCCCCCCCCCEEEE--EeCchHHHH-hc-CcceEEEccCCChhHHHHHHHHhhh
Q 047103 291 G--QLEGLIGGLDQFGLGSRIII--TTRDKRVLE-KF-GVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 291 ~--~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~-~~-~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
. .|+.+...+....+...|+| ||++..... .+ .....+.+.+++.+|.++++.+.+-
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 3 36666555554445555555 666543211 11 1124678899999999999988663
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00019 Score=84.80 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=97.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
...+.|+|..|.|||+|++++++.+..... .++++. ...+...+...+.... ...+.+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 356889999999999999999997754322 334443 2345555555543211 111224444
Q ss_pred hcCCeEEEEecCCCChh---h-HHHHhcCCCC-CCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHHH
Q 047103 275 FRCMKVLIVLDNVSKVG---Q-LEGLIGGLDQ-FGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVALE 340 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~ 340 (1095)
++. .-+||+||+.... . .+.+..-+.. ...|..||+|+... .+...+...-+.++++++.++-.+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 3478889995432 1 2222221111 13445788886533 223334445688999999999999
Q ss_pred HHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeec
Q 047103 341 QFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMG 378 (1095)
Q Consensus 341 Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 378 (1095)
++.+++-.......--++...-|++.+.|.|-.+.-+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988743221112235667788888999887765443
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00029 Score=81.85 Aligned_cols=180 Identities=13% Similarity=0.197 Sum_probs=104.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--------CCceEEEEecccccCC
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--------FEGTCFVADVRRNSGT 240 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--------F~~~~~v~~v~~~~~~ 240 (1095)
|...++++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+... |...++- +.. ...
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccC
Confidence 445678999999999999988753 234678899999999999999998876431 2221111 110 000
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEe-CchH
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITT-RDKR 317 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~ 317 (1095)
.++..+. ++..++... -..+++-++|+|+++... .++.+...+........+|++| +...
T Consensus 88 -~~~~~i~-~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 88 -NSVDDIR-NLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred -CCHHHHH-HHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 2222222 222221100 012344579999987543 3666654443333445666555 3333
Q ss_pred HHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 318 VLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 318 v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
+... ......+++++++.++....+...+-..+.. --.+....+++.++|.+-
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 3222 1223578999999999998888777443321 113556677777777544
No 111
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00036 Score=84.82 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=109.0
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.... . ...+++.....
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~------~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----I------TATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----C------CCCCCCCCHHH
Confidence 3456789999999999998886532 2355789999999999999999987532210 0 00011222222
Q ss_pred HHHHHHhcCCCccccCC-----CchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAGP-----NIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~-----~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
++|...-...-...+.. +..+.+.+. ..+++-++|+|+++.. ...+.|+..+.......++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 22221100000000000 001111111 2345668999999754 45677766555444556666555544
Q ss_pred -HHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 317 -RVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 317 -~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.+... ..-...|.++.++.++..+.+.+.+-.... ....+....|++.++|.+-
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMR 215 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 44332 222478999999999999988776532221 1123445678888999765
No 112
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=1.1e-05 Score=90.14 Aligned_cols=236 Identities=23% Similarity=0.247 Sum_probs=152.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
...|.+.++|.|||||||++-.+.. +...|...+|+.+.....+. ..+.-.+...++-... .+......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~--~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQ--PGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccc--cchHHHHHHHHH
Confidence 4568899999999999999999998 88889877766655554332 2233333332322111 222333346777
Q ss_pred hcCCeEEEEecCCCChhh-HHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEccCCChh-HHHHHHHHhhhccC--
Q 047103 275 FRCMKVLIVLDNVSKVGQ-LEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVNGLQFD-VALEQFCNYAFKEN-- 350 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~~L~~~-ea~~Lf~~~af~~~-- 350 (1095)
..++|.++|+||-..... -..+...+....+.-.|+.|+|..... ..+..+.++.|+.. ++.++|...+-.-.
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 888999999999866432 223333333334555788898876432 23467889999874 89999987763211
Q ss_pred -CCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc--------------------------------ccCCCCHHH
Q 047103 351 -RCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH--------------------------------CFNDLTFEA 397 (1095)
Q Consensus 351 -~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~--------------------------------sy~~L~~~~ 397 (1095)
--.........+|.+...|.|+++...++..+.-.... ||.-|..-+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11123345677899999999999998887665433322 777788888
Q ss_pred HHHhhhhhcccCCCCHHHHHHHhhccCC--Cc------cceeccCCceeEe
Q 047103 398 KNIFLDIACFFEGEDKDFVMRVLDDFVS--PE------LDVLIDKSLVTIL 440 (1095)
Q Consensus 398 k~~fl~~a~f~~~~~~~~v~~~l~~~~~--~~------l~~L~~~sLi~~~ 440 (1095)
+-.|--++.|...++.+........... +. +..+++++++...
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 8888888888777766532222211111 21 7778888887654
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=9.3e-06 Score=95.84 Aligned_cols=221 Identities=17% Similarity=0.141 Sum_probs=113.7
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceeecccCCCCccccCCCC
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYIDLNHSSNLTRIPEPS 587 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~Ls~n~~l~~~p~~~ 587 (1095)
+..+++|..|++++|.|..+... +..++ +|++|++++|.+..+ ..++.|+.|++++| .+..++.+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~---------l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL---------LSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGN-LISDISGLE 159 (414)
T ss_pred cccccceeeeeccccchhhcccc---------hhhhh-cchheeccccccccccchhhccchhhheeccC-cchhccCCc
Confidence 45566677777777766544321 22222 566666666655444 44555666777776 344555566
Q ss_pred CCccccEeeccCCccCcccc-ccccCCCCcceEeccCCCCCcccCCcccccccce-e--eccCCcccCCCccccC-CceE
Q 047103 588 ETPNLDRMNLWNCTGLALIP-SYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-I--NCSECVNLSEFPRISG-NVVE 662 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l--~l~~c~~L~~~p~~~~-~L~~ 662 (1095)
.+++|+.+++++|.+...-+ . ...+.+|+.|.+.+|.....- .+..+..+. + .-.....+..++.... +|+.
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRE 236 (414)
T ss_pred cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccCcccchhHHHHH
Confidence 66777777777766544333 1 356666666667664432211 111111111 1 1111222222222111 2677
Q ss_pred EEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc-ccCCCCCCEE
Q 047103 663 LKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS-IENLEGLREL 741 (1095)
Q Consensus 663 L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~-l~~l~~L~~L 741 (1095)
+++++|.+..++..+..+.++..|++.++.....- .+.....+..+....+.+.... ...... ....+.++.+
T Consensus 237 l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 237 LYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE----AISQEYITSAAPTLVTL 310 (414)
T ss_pred HhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh----hhhcccccccccccccc
Confidence 88888888877766777777888887776543321 1233444555555554433210 011111 3445566666
Q ss_pred EecCCCCCCC
Q 047103 742 QLMGCTKLGS 751 (1095)
Q Consensus 742 ~L~~~~~~~~ 751 (1095)
.+.+++....
T Consensus 311 ~~~~~~~~~~ 320 (414)
T KOG0531|consen 311 TLELNPIRKI 320 (414)
T ss_pred ccccCccccc
Confidence 6666654443
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.74 E-value=0.00018 Score=77.48 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCCcc-cchhHH-HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 171 SYNGLV-GLNSRI-EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 171 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
..++|+ |..... ..+.++.. .. ...+.+.|+|..|+|||+||+++++.....=....++... .+.
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~-~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-----------~~~ 82 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GP-VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-----------SPL 82 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-cc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-----------HhH
Confidence 345555 544333 33444333 21 3356788999999999999999999764332234444311 111
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCC-CCCC-EEEEEeCchHH------
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQF-GLGS-RIIITTRDKRV------ 318 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~-~~gs-rIIiTTR~~~v------ 318 (1095)
..+ ... ...-+||+||++... +.+.+...+... ..|. .||+|++....
T Consensus 83 ~~~---------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 83 LAF---------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred HHH---------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 000 001 122368889996432 222232222111 2334 36666664321
Q ss_pred --HHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeecc
Q 047103 319 --LEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGS 379 (1095)
Q Consensus 319 --~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 379 (1095)
...+.....++++++++++-.+++...+-.... .--.+....+++...|.+..+..+-.
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 112222468899999998877777654322111 11235566777788888887665443
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.73 E-value=0.00027 Score=89.12 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 149 LLIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 149 ~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.++++...++..+. .+...+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++..
T Consensus 163 ~~l~~~~~~l~~~~-----r~~~l~~~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 163 DALEKYTVDLTEKA-----KNGKIDPLIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred hHHHHHhhhHHHHH-----hcCCCCcccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35566666655554 12344679999999999999886643 334569999999999999999998743
No 116
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00035 Score=79.71 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=112.8
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC----CCceEEEEecccccCCCCC
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG----FEGTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~----F~~~~~v~~v~~~~~~~~~ 243 (1095)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +..... ..+.+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--------~~~~~ 87 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--------ADPDP 87 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--------CCCCC
Confidence 4566788999999999999988754 234568899999999999999999976432 111100 00011
Q ss_pred HHHHHHHHHHH-------hc----CCCccc-cC--CCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCC
Q 047103 244 LEHLQKQILST-------IL----SEKLEV-AG--PNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQ 302 (1095)
Q Consensus 244 l~~l~~~ll~~-------l~----~~~~~~-~~--~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~ 302 (1095)
-....+.+... +. .+.... .. .+..+.+.+.+ .+++-++|+|+++... ..+.|+..+..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 11222222211 00 000000 00 01111233333 2356689999997643 35555555544
Q ss_pred CCCCCEEEEEe-CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeee
Q 047103 303 FGLGSRIIITT-RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 303 ~~~gsrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
......+|++| +...++... .-...+++.+++.++..+++...+.... -..+....+++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33445555544 443443332 2236899999999999999987432211 11344678899999999765433
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.72 E-value=0.00082 Score=76.52 Aligned_cols=267 Identities=10% Similarity=0.096 Sum_probs=149.1
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC-CCCCHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG-TGGGLEH 246 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~-~~~~l~~ 246 (1095)
.+.+.+..|.|...-+++.+.+... -..+.|.|+-.+|||||...+.++....=-.++++. ...... ...+...
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~----G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP----GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC----CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHH
Confidence 3445667889986666666666432 358899999999999999999988754322334553 433222 1134444
Q ss_pred HH----HHHHHHhcCCC-ccc-------cCCCchHHHHhhh-c--CCeEEEEecCCCChhh----HHHHhcCC-------
Q 047103 247 LQ----KQILSTILSEK-LEV-------AGPNIPQFTKGRF-R--CMKVLIVLDNVSKVGQ----LEGLIGGL------- 300 (1095)
Q Consensus 247 l~----~~ll~~l~~~~-~~~-------~~~~~~~~l~~~L-~--~kr~LlVLDdv~~~~~----l~~l~~~~------- 300 (1095)
.. ..+..+++... ... ........+.+.+ . +++++|++|+|+..-. .+.+.+.+
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 44 44444443321 000 1122233455433 2 5799999999975432 11111111
Q ss_pred CCCC-CCCEEEEEeCch--HHHHh-----cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 301 DQFG-LGSRIIITTRDK--RVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 301 ~~~~-~gsrIIiTTR~~--~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.... ..+-.+|...+. .+... ..+...++++.++.+|..+|...+-.. . -....+++...+||+|-
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHH
Confidence 0000 111122222211 11111 234568899999999999999877422 1 12227889999999999
Q ss_pred ceeeeccccccccccc------------ccCCCCHHHHHHhhhhhcccCCCCHHHHHHHhhccC----CCc-cceeccCC
Q 047103 373 ALKVMGSSLYQKSKTH------------CFNDLTFEAKNIFLDIACFFEGEDKDFVMRVLDDFV----SPE-LDVLIDKS 435 (1095)
Q Consensus 373 al~~lg~~L~~~~~~~------------sy~~L~~~~k~~fl~~a~f~~~~~~~~v~~~l~~~~----~~~-l~~L~~~s 435 (1095)
-+..++..+....... .| +++.+.+.-.+.-- ..-.+.+..++.+.. .+. ...|...|
T Consensus 235 Lv~~~~~~l~~~~~~~~~l~~~a~~~~~~~---~~hL~~l~~~L~~~--~~L~~~~~~il~~~~~~~~~~~~~~~L~~~G 309 (331)
T PF14516_consen 235 LVQKACYLLVEEQITLEQLLEEAITDNGIY---NDHLDRLLDRLQQN--PELLEAYQQILFSGEPVDLDSDDIYKLESLG 309 (331)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhcccH---HHHHHHHHHHHccC--HHHHHHHHHHHhCCCCcccChHHHHHHHHCC
Confidence 9888888886643322 11 23444444443111 111233444555432 111 77888999
Q ss_pred ceeEeCCEEEeeHHH
Q 047103 436 LVTILDNRLQMHDLL 450 (1095)
Q Consensus 436 Li~~~~~~~~mHdll 450 (1095)
||...++.+..+.-+
T Consensus 310 LV~~~~~~~~~~n~i 324 (331)
T PF14516_consen 310 LVKRDGNQLEVRNPI 324 (331)
T ss_pred eEEEeCCEEEEEcHH
Confidence 999988888766433
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00067 Score=82.36 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
...+++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-.. -+.. ......+++.....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~------~~~~~~pCg~C~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ------GGITATPCGVCQAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc------cCCCCCCCCccHHH
Confidence 456789999988888998887642 34677899999999999999998865310 0000 00000012222222
Q ss_pred HHHHHHhcCCCccccCC--CchHHHHhhh--------cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc-
Q 047103 249 KQILSTILSEKLEVAGP--NIPQFTKGRF--------RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD- 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~--~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~- 315 (1095)
+.+...-...-...+.. .-.+.+++.+ .++.-++|+|+|+.. ...+.|+..+.......++|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 22211100000000000 0011122211 233457899999764 4577777666554455666666544
Q ss_pred hHHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 316 KRVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 316 ~~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..+... ..-...++++.++.++..+.+.+.+-..+.. --.+....|++.++|-+-
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR 220 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMR 220 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 334322 2234789999999999988888766333221 123455677888887653
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00053 Score=82.70 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=105.1
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC---------------------Cce
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF---------------------EGT 228 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F---------------------~~~ 228 (1095)
...+++||-+..++.+..++..+. -...+.++|+.|+||||+|+.++..+-... ...
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 456789999999999999887532 245678999999999999999998763211 011
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCC
Q 047103 229 CFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLG 306 (1095)
Q Consensus 229 ~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~g 306 (1095)
.++. . ... .++..+ ++++..... .-..+++-++|+|+++... ..+.|+..+......
T Consensus 91 ~ei~---~-~~~-~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD---A-ASN-TQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee---c-ccc-CCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1110 0 000 112111 122221110 0112456689999998654 366666666554456
Q ss_pred CEEEEEeCch-HHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 307 SRIIITTRDK-RVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 307 srIIiTTR~~-~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..+|++|.+. .+... ..-...++++.++.++..+.+.+.+-..+. ....+....+++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 6677666544 33222 112357899999999988888765532221 1123445677888888664
No 120
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=2.1e-06 Score=94.77 Aligned_cols=253 Identities=18% Similarity=0.256 Sum_probs=126.4
Q ss_pred CCCCcceeecccCCCCccccCC---CCCCccccEeeccCCccCcccc--ccccCCCCcceEeccCCCCCcc--cCCcccc
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPE---PSETPNLDRMNLWNCTGLALIP--SYIQNFNNLGNLSLEGCESLRC--FPQNIHF 636 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~L~~c~~l~~--lp~~i~~ 636 (1095)
..+++++.|++.+|..++...- -..+++|++|+|..|..+.... .-...+++|++|++++|..+.. +..-..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 5677888888888875554332 2467888888888877655432 1234678889999998877664 1011112
Q ss_pred cccce-eeccCCcccCC--C---ccccCCceEEEecCCC-Ccccc--CccCCCCCCcEEeccCCCCCCcccc--ccCCCC
Q 047103 637 VSSIK-INCSECVNLSE--F---PRISGNVVELKLRHTP-IEEVP--SSIDCLPDLETLEMSNCYSLKSLST--NICKLK 705 (1095)
Q Consensus 637 l~~L~-l~l~~c~~L~~--~---p~~~~~L~~L~L~~n~-i~~lp--~~i~~l~~L~~L~Ls~~~~l~~lp~--~l~~L~ 705 (1095)
...++ +...||..+.. + -.....+..+++..+. ++... ..-..+..|+.|+.++|...+..+- -..+..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 33333 33334443320 0 0011112333333321 22111 0013355666666666655443221 123456
Q ss_pred CCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCe
Q 047103 706 SLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVE 785 (1095)
Q Consensus 706 ~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~ 785 (1095)
+|+.|-+++|+..+.. .++.+ -.+.+.|+.|++.+|...... .+-..-.+++.|+.
T Consensus 321 ~L~~l~l~~c~~fsd~--~ft~l---~rn~~~Le~l~~e~~~~~~d~-------------------tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDR--GFTML---GRNCPHLERLDLEECGLITDG-------------------TLASLSRNCPRLRV 376 (483)
T ss_pred ceEEEeccccchhhhh--hhhhh---hcCChhhhhhcccccceehhh-------------------hHhhhccCCchhcc
Confidence 6666666666543321 11111 123455555555554422111 01111245677788
Q ss_pred eeCCCCCCc------ccCcccCCCCCCCEEeccCCCCcccCCCC-C--CCccceeecccCccCc
Q 047103 786 LDLSRNNFE------SLPSGISHLSRLKWLHLFDCIMLQSSLPE-L--PPHLVMLDARNCKRLQ 840 (1095)
Q Consensus 786 L~Ls~n~l~------~lp~~l~~L~~L~~L~L~~c~~l~~~lp~-l--~~sL~~L~l~~c~~L~ 840 (1095)
|.|++|.+. .+...-..+..|..|.|++|+.+....-+ + -++|+.+++.+|....
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 877776433 12333455677888899998875541111 1 1355555555555443
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00047 Score=83.84 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=109.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-......- . .....+++...-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr--i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~-~~~~~~cg~c~~C 92 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR--IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----G-GPTIDLCGVGEHC 92 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----C-CCccccCcccHHH
Confidence 3456789999999999999887542 3456789999999999999999997643221000 0 0000001111112
Q ss_pred HHHHHHhcCCCcccc-----CCCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEe-Cc
Q 047103 249 KQILSTILSEKLEVA-----GPNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITT-RD 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~ 315 (1095)
+.+...-...-...+ +.+..+.+.+.+ ..++-++|+|+++... ..+.|+..+....+.+++|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 222221110000000 000011111111 2334568999996543 4666666555445666766555 44
Q ss_pred hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 316 KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 316 ~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
..+...+ .-...+++..++.++..+.+.+.+-.... .--.+....|++.++|-+.-
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRD 229 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 4444332 23468899999999999888877633321 11235566788888887643
No 122
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.00053 Score=81.25 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=93.3
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-----CceEEEE
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-----EGTCFVA 232 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-----~~~~~v~ 232 (1095)
|.....++.|.+..++++.+.+...- -...+-+.++|++|.|||++|+++++.+...+ ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 33445678899999999888764210 02345688999999999999999999876542 2344443
Q ss_pred eccccc--CCCC-CHHHHHHHHHHHhcCCCccccCCCchHHHHhh-hcCCeEEEEecCCCChh---------h-----HH
Q 047103 233 DVRRNS--GTGG-GLEHLQKQILSTILSEKLEVAGPNIPQFTKGR-FRCMKVLIVLDNVSKVG---------Q-----LE 294 (1095)
Q Consensus 233 ~v~~~~--~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----l~ 294 (1095)
+.... .... ......+.++. ..+.. -.+++++|++|+++... + +.
T Consensus 257 -v~~~eLl~kyvGete~~ir~iF~----------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 257 -IKGPELLNKYVGETERQIRLIFQ----------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred -ccchhhcccccchHHHHHHHHHH----------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 21100 0000 00011111111 12211 12468999999997431 1 23
Q ss_pred HHhcCCCCCC--CCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 295 GLIGGLDQFG--LGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 295 ~l~~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.++..++... .+..||.||-..+.+.. -..+..++++..+.++..++|..+.
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 4444443222 33445556654443221 1346679999999999999998875
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.66 E-value=0.00044 Score=76.15 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=80.5
Q ss_pred CcccchhHHHHHHHhhhc------------cCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccC
Q 047103 174 GLVGLNSRIEQIKPLLCM------------ELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSG 239 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~------------~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~ 239 (1095)
.++|.+..+++|.++... ........+.++|++|+||||+|+.+++.+... -....++. ++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 477777666666543211 011345677899999999999999999875321 11112222 10
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC-CeEEEEecCCCC----------hhhHHHHhcCCCCCCCCCE
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC-MKVLIVLDNVSK----------VGQLEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~----------~~~l~~l~~~~~~~~~gsr 308 (1095)
-..+ .....+. . ...+++.+.. ..-+|++|+++. .++++.+..........-.
T Consensus 82 ----~~~l----~~~~~g~----~----~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 82 ----RADL----VGEYIGH----T----AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred ----HHHh----hhhhccc----h----HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 0111 1110000 0 0111222211 124788999964 2345666655544333335
Q ss_pred EEEEeCchHH----------HHhcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 309 IIITTRDKRV----------LEKFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 309 IIiTTR~~~v----------~~~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
+|+++...+. ... ....++++.++.+|-.+++.+.+-
T Consensus 146 vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHH
Confidence 5555543322 112 235688999999999999987663
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.00042 Score=80.88 Aligned_cols=156 Identities=22% Similarity=0.313 Sum_probs=91.1
Q ss_pred CCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
....++.|.+..+++|.+.+...- -...+-+.++|++|.|||++|+++++.....| +....
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f-----i~V~~---- 250 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF-----LRVVG---- 250 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EEEec----
Confidence 344678899999999988774311 02345678999999999999999999876554 21110
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCC-chHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCC
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPN-IPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 302 (1095)
..+ .... ++. ... +...+.......+.+|+||+++... .+..++..+..
T Consensus 251 --seL---~~k~---~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 251 --SEL---IQKY---LGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred --chh---hhhh---cch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 000 0000 000 000 0111222223456788889875321 12223322222
Q ss_pred C--CCCCEEEEEeCchHHHHhc-----CcceEEEccCCChhHHHHHHHHhhhc
Q 047103 303 F--GLGSRIIITTRDKRVLEKF-----GVKKIYRVNGLQFDVALEQFCNYAFK 348 (1095)
Q Consensus 303 ~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~v~~L~~~ea~~Lf~~~af~ 348 (1095)
+ ..+-+||.||...+.+... ..+..++++..+.++..++|..++-+
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 2356788888766554331 34578999999999999999887643
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00039 Score=82.12 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=86.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
...+.|||.+|+|||+||+++++.+..+.. .+.|+. ...+..++...+.... ...+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~~--------~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEGK--------LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhccc--------HHHHHHH
Confidence 446899999999999999999998766543 344443 2234444444443211 1124444
Q ss_pred hcCCeEEEEecCCCChh-------hHHHHhcCCCCCCCCCEEEEEeC-chHHH--------HhcCcceEEEccCCChhHH
Q 047103 275 FRCMKVLIVLDNVSKVG-------QLEGLIGGLDQFGLGSRIIITTR-DKRVL--------EKFGVKKIYRVNGLQFDVA 338 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~-------~l~~l~~~~~~~~~gsrIIiTTR-~~~v~--------~~~~~~~~~~v~~L~~~ea 338 (1095)
++.+.-+||+||+.... .+-.+...+. ..|..||+||. ...-+ ..+....+.++++.+.+.-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 44344588999997431 1212221221 23457888874 33222 2233345889999999999
Q ss_pred HHHHHHhhhccCCCCcchHHHHHHHHHHhCCC
Q 047103 339 LEQFCNYAFKENRCPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 339 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 370 (1095)
.+++.+.+-..... --.+....|++.+.|.
T Consensus 269 ~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 269 KKIARKMLEIEHGE--LPEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHhccccC
Confidence 99998887432111 1134455555555553
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=1.5e-06 Score=101.19 Aligned_cols=125 Identities=26% Similarity=0.238 Sum_probs=84.4
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc-ccCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS-IENLEG 737 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~-l~~l~~ 737 (1095)
.|...+.+.|.+..+..++.-++.|+.|+|++|++...- .+..|+.|++|||+.|.+.. +|.. ...+ .
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~--------vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH--------VPQLSMVGC-K 233 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc--------ccccchhhh-h
Confidence 355667778888888888888888999999988765543 56778888888888875432 3321 1222 3
Q ss_pred CCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc--ccCCCCCCCEEeccCCC
Q 047103 738 LRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS--GISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~L~~L~~L~L~~c~ 815 (1095)
|+.|.|++|.+... ..+.++.+|+.|||+.|-|..... -+..|..|+.|.|.+||
T Consensus 234 L~~L~lrnN~l~tL-----------------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL-----------------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHHhh-----------------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777777653211 124566788888888887663321 35567788888888887
Q ss_pred Cc
Q 047103 816 ML 817 (1095)
Q Consensus 816 ~l 817 (1095)
.-
T Consensus 291 l~ 292 (1096)
T KOG1859|consen 291 LC 292 (1096)
T ss_pred cc
Confidence 53
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0014 Score=79.91 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=106.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|...+++||-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|...+.+ +.+...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~ 85 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECE 85 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCH
Confidence 345678999999999998888653 223558899999999999999999876321 111112111111 012222
Q ss_pred HHHHHHHHhcCCCccccC-----CCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEe-
Q 047103 247 LQKQILSTILSEKLEVAG-----PNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITT- 313 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT- 313 (1095)
..+.+...-...-...++ .+..+.+.+.+ .+.+-++|+|+++... ..+.|+..+....+.+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 222221110000000011 00111122222 2334578999997653 4666666555444556655554
Q ss_pred CchHHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 314 RDKRVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 314 R~~~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
+...+... ......+++..++.++....+...+-.... .--.+.+..+++.++|..
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSM 222 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCH
Confidence 44444433 233578999999999988777665532221 112345667888888744
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00064 Score=80.13 Aligned_cols=131 Identities=16% Similarity=0.176 Sum_probs=77.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
...+.|+|..|+|||+||+++++.+..+-..+.|+. ...+...+...+.... .+.++..++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~~--------~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSGE--------MQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcch--------HHHHHHHcc
Confidence 356789999999999999999998765434445553 2233444444443211 122444443
Q ss_pred CCeEEEEecCCCChhh----HHHHhcCCCC-CCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHHHHH
Q 047103 277 CMKVLIVLDNVSKVGQ----LEGLIGGLDQ-FGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVALEQF 342 (1095)
Q Consensus 277 ~kr~LlVLDdv~~~~~----l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~Lf 342 (1095)
. .-+|++||+..... .+.+...+.. ...|..||+||... .+...+....++++++++.++..+++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34778899854321 1122111110 01345788887542 22223334468999999999999999
Q ss_pred HHhhh
Q 047103 343 CNYAF 347 (1095)
Q Consensus 343 ~~~af 347 (1095)
.+++-
T Consensus 281 ~~k~~ 285 (445)
T PRK12422 281 ERKAE 285 (445)
T ss_pred HHHHH
Confidence 88773
No 129
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.61 E-value=0.00046 Score=82.26 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=88.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCc--eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEG--TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKG 273 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~--~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 273 (1095)
....+.|+|..|+|||+||+++++.+..++.. +.|+. ...+..++...+... ....+++
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~ 207 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKE 207 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHH
Confidence 34568899999999999999999998766532 33443 223334444443221 1122444
Q ss_pred hhcCCeEEEEecCCCChh----hHHHHhcCCCC-CCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHH
Q 047103 274 RFRCMKVLIVLDNVSKVG----QLEGLIGGLDQ-FGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVAL 339 (1095)
Q Consensus 274 ~L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~ 339 (1095)
.++. --+|||||+.... ..+.+...+.. ...|..||+||... .+...+....++++++++.++-.
T Consensus 208 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 4443 3478899995421 11222221110 12345688877643 12233444468999999999999
Q ss_pred HHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 340 EQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 340 ~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
+++...+-.... .--.+....|++.+.|..-
T Consensus 287 ~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 287 AILKKKAEEEGI--DLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHH
Confidence 999988743211 1123445556666655443
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00065 Score=83.34 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=110.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+...+++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+...... . ...+++.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~---~~~~c~~c~~c 80 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------P---KGRPCGTCEMC 80 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C---CCCCCccCHHH
Confidence 3445789999999999988886532 24567899999999999999999876421100 0 00002222233
Q ss_pred HHHHHHhcCCCccccC---C--CchHHHHhhh-----cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAG---P--NIPQFTKGRF-----RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~---~--~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+.+...........+. . +..+.+.+.+ ..++-++|+|+++.. +..+.|+..+....+...+|++|.+.
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 3333221111000110 0 0011111211 234568999999754 44666666555444566776666443
Q ss_pred -HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcce
Q 047103 317 -RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 317 -~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 374 (1095)
.+.... .....++++.++.++..+.+.+.+-..+.. --.+.+..+++.++|.+..+
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDA 218 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 343322 223578899999999888888776433221 12355678888998877543
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0013 Score=77.92 Aligned_cols=180 Identities=15% Similarity=0.255 Sum_probs=103.6
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC---C----ceE-------------
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF---E----GTC------------- 229 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F---~----~~~------------- 229 (1095)
...++++|-+..++.+...+..+. -...+.++|..|+||||+|+.+++.+-..= + ..|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~--i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR--AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 456789999999999999886532 236678999999999999999998763210 0 000
Q ss_pred EEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCC
Q 047103 230 FVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGS 307 (1095)
Q Consensus 230 ~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 307 (1095)
|+. +.. ... .++..+. ++...+. . .....++-++|+|+++.. ...+.|...+.......
T Consensus 92 ~~~-i~g-~~~-~gid~ir-~i~~~l~--------------~-~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLE-IDG-ASH-RGIEDIR-QINETVL--------------F-TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEE-eec-ccc-CCHHHHH-HHHHHHH--------------h-hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 110 000 000 1121111 1111110 0 001244567899998754 34555555554444566
Q ss_pred EEEEEeCc-hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 308 RIIITTRD-KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 308 rIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.+|++|.. ..+...+ .....++++.+++++..+.+...+-..+. .--.+.+..++++++|.+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 66666643 3333322 23467899999999988888776532221 1123456678888888553
No 132
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00085 Score=80.43 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=104.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC---------------------CCc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG---------------------FEG 227 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---------------------F~~ 227 (1095)
|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. |..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3456789999999999999997542 24567899999999999999999875321 111
Q ss_pred eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCC
Q 047103 228 TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 228 ~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 305 (1095)
...+.. ... .++..+ +++++.+.. .-..++.-++|+|+|+.. ...+.|+..+....+
T Consensus 90 ~~eida----as~-~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 90 LFEVDA----ASR-TKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEEcc----ccc-CCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 111110 000 222222 122222110 001234457889999764 456666665554455
Q ss_pred CCEEEEEeCch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 306 GSRIIITTRDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 306 gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..++|++|.+. .+.... .-...++++.++.++..+.+...+-..+.. -..+....+++.++|-+.
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR 215 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVR 215 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHH
Confidence 67777666554 333221 223578899999988777665554322211 112345577888888664
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.0016 Score=72.54 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=81.3
Q ss_pred CcccchhHHHHHHHhhhc------------cCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccC
Q 047103 174 GLVGLNSRIEQIKPLLCM------------ELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSG 239 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~------------~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~ 239 (1095)
.++|.+..+++|.++... .......-+.++|.+|.||||+|+.++..+... .....|+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~----- 97 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT----- 97 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-----
Confidence 467776666665543211 000122357799999999999999988865432 1112233311
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-----------hhHHHHhcCCCCCCCCCE
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-----------GQLEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsr 308 (1095)
.. ++...+.+.. .......++.. ..-+|+||++... +.++.|...+.....+-+
T Consensus 98 ----~~----~l~~~~~g~~----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 98 ----RD----DLVGQYIGHT----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ----HH----HHhHhhcccc----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 11 1222211110 00111112221 2358889999632 234555555544445556
Q ss_pred EEEEeCchHHHHhc--------CcceEEEccCCChhHHHHHHHHhh
Q 047103 309 IIITTRDKRVLEKF--------GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 309 IIiTTR~~~v~~~~--------~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
||.++.....-..+ .....+++++++.+|-.+++...+
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 66666543221111 124578999999999999988765
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.59 E-value=0.00065 Score=79.97 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=87.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
...+.|+|..|+|||+||+++++.+..+.. .++|+. ...+..++...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 456889999999999999999998866543 234443 223334444443321 11224444
Q ss_pred hcCCeEEEEecCCCChh---h-HHHHhcCCCC-CCCCCEEEEEeCch-H--------HHHhcCcceEEEccCCChhHHHH
Q 047103 275 FRCMKVLIVLDNVSKVG---Q-LEGLIGGLDQ-FGLGSRIIITTRDK-R--------VLEKFGVKKIYRVNGLQFDVALE 340 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~-~--------v~~~~~~~~~~~v~~L~~~ea~~ 340 (1095)
++. .-+|||||++... . .+.+...+.. ...|..||+||... . +...+....++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 2378899996431 1 1122211111 02345678877532 2 22223334578999999999999
Q ss_pred HHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 341 QFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 341 Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
++...+-.... .--++....|++.+.|..-
T Consensus 276 il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 276 ILQKKAEEEGL--ELPDEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHH
Confidence 99888743221 1124555566666666544
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.0018 Score=82.57 Aligned_cols=168 Identities=16% Similarity=0.188 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC---
Q 047103 149 LLIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF--- 225 (1095)
Q Consensus 149 ~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F--- 225 (1095)
..+++...++..+. .+...+.+|||+.+++++...|.... ..-+.++|.+|+||||||+.++.++....
T Consensus 168 ~~l~~~~~~L~~~~-----r~~~ld~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~ 239 (852)
T TIGR03345 168 SALDQYTTDLTAQA-----REGKIDPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPP 239 (852)
T ss_pred hhHHHHhhhHHHHh-----cCCCCCcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCc
Confidence 35566666655554 23345689999999999999886643 33456999999999999999999875432
Q ss_pred ---CceEEEEecccccC-C--CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------h
Q 047103 226 ---EGTCFVADVRRNSG-T--GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------Q 292 (1095)
Q Consensus 226 ---~~~~~v~~v~~~~~-~--~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------~ 292 (1095)
...+|..+...... . ...+..-.++++.. +++ ..++++|++|++.... +
T Consensus 240 ~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e----------------~~~--~~~~~ILfIDEih~l~~~g~~~~~ 301 (852)
T TIGR03345 240 ALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE----------------VKA--SPQPIILFIDEAHTLIGAGGQAGQ 301 (852)
T ss_pred cccCCeEEEeehhhhhcccccchHHHHHHHHHHHH----------------HHh--cCCCeEEEEeChHHhccCCCcccc
Confidence 12233222221110 0 01111111222211 111 1368899999885432 1
Q ss_pred HH---HHhcCCCCCCCC-CEEEEEeCchHHHHhc-------CcceEEEccCCChhHHHHHHHHh
Q 047103 293 LE---GLIGGLDQFGLG-SRIIITTRDKRVLEKF-------GVKKIYRVNGLQFDVALEQFCNY 345 (1095)
Q Consensus 293 l~---~l~~~~~~~~~g-srIIiTTR~~~v~~~~-------~~~~~~~v~~L~~~ea~~Lf~~~ 345 (1095)
.+ .|.+.+. .| -++|-||...+.-..+ .--..+.|+.++.+++.+++...
T Consensus 302 ~d~~n~Lkp~l~---~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 302 GDAANLLKPALA---RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ccHHHHhhHHhh---CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 11 2333332 33 3555555543221111 12258999999999999998543
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.57 E-value=0.00095 Score=77.45 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=91.8
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
|.....++.|.+..+++|.+.+...- -...+-+.++|++|.|||+||+++++.....| +....
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~-- 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVG-- 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEeh--
Confidence 34445679999999999887664210 03457788999999999999999999765433 21110
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCC
Q 047103 238 SGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLD 301 (1095)
Q Consensus 238 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~ 301 (1095)
..+.... ++.. ...+.+.+.......+.+|++|+++... .+..++..+.
T Consensus 213 -------s~l~~k~---~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 213 -------SEFVQKY---LGEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred -------HHHHHHh---cchh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 0111100 0000 0000111222223567899999986421 1233333333
Q ss_pred CC--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 302 QF--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 302 ~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+ ..+-.||.||...+.+.. ...+..++++..+.++..++|..+.
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 22 235568888876544322 1346788999999999999988665
No 137
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.53 E-value=0.00017 Score=81.64 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCC-------Cch
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGP-------NIP 268 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-------~~~ 268 (1095)
-..++|+|++|.|||||++.+++.+..+ |+..+|+..+++. +..+..+++.++..+-....+.... .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4578999999999999999999987655 9999999876542 2578889998865532222111100 011
Q ss_pred HHHHh-hhcCCeEEEEecCCCChhh
Q 047103 269 QFTKG-RFRCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 269 ~~l~~-~L~~kr~LlVLDdv~~~~~ 292 (1095)
+..+. +-.+++++|++|++.....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHH
Confidence 11112 2357899999999965543
No 138
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0016 Score=78.69 Aligned_cols=196 Identities=11% Similarity=0.117 Sum_probs=109.3
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+...++++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..... ...+++.....
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~----------~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAP----------TGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCC----------CCCCCcccHHH
Confidence 344578899988888888888653 224677899999999999999999876321100 00001111112
Q ss_pred HHHHHHhcCCCccccC-----CCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc-
Q 047103 249 KQILSTILSEKLEVAG-----PNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD- 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~-----~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~- 315 (1095)
+.+.......-..+++ .+..+.+++. ..+++-+||+|+++.. ...+.|+..+........+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 2221110000000000 0001111111 2345668999999764 4466666665443345566665655
Q ss_pred hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC-cceeeec
Q 047103 316 KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP-LALKVMG 378 (1095)
Q Consensus 316 ~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg 378 (1095)
..+...+ .....++++.++.++..+.+...+..... .--.+.++.|++.++|.+ .|+..+.
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444332 22357899999999999888876644322 112345667888888854 5555544
No 139
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.53 E-value=3.6e-06 Score=92.88 Aligned_cols=250 Identities=20% Similarity=0.288 Sum_probs=140.0
Q ss_pred cceeecccCCCCccccCC---CCCCccccEeeccCCccCcccc--ccccCCCCcceEeccCCCCCcccC--Ccccccccc
Q 047103 568 KLKYIDLNHSSNLTRIPE---PSETPNLDRMNLWNCTGLALIP--SYIQNFNNLGNLSLEGCESLRCFP--QNIHFVSSI 640 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~L~~c~~l~~lp--~~i~~l~~L 640 (1095)
.|+.|.|.++.-...-+- ...+||++.|.+.+|..+.... +.-...++|++|+|..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 567777887765554432 4789999999999998655421 222367899999999988776432 122346777
Q ss_pred e-eeccCCcccCC-----CccccCCceEEEecCCCCc---cccCccCCCCCCcEEeccCCCCCCccc--cccCCCCCCCE
Q 047103 641 K-INCSECVNLSE-----FPRISGNVVELKLRHTPIE---EVPSSIDCLPDLETLEMSNCYSLKSLS--TNICKLKSLRS 709 (1095)
Q Consensus 641 ~-l~l~~c~~L~~-----~p~~~~~L~~L~L~~n~i~---~lp~~i~~l~~L~~L~Ls~~~~l~~lp--~~l~~L~~L~~ 709 (1095)
+ ++++.|..++. +.....+++.+.+.|+.=. .+-..-....-+..+++..|..++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 7 77777776654 1111122333333332100 010011233344455555554443322 11124556666
Q ss_pred EEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCC
Q 047103 710 LHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLS 789 (1095)
Q Consensus 710 L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls 789 (1095)
|+.++|...+..+ +. .-..+..+|+.|-+++|+..+..- +..--.+.+.|+.|++.
T Consensus 299 l~~s~~t~~~d~~--l~---aLg~~~~~L~~l~l~~c~~fsd~~-------------------ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 299 LCYSSCTDITDEV--LW---ALGQHCHNLQVLELSGCQQFSDRG-------------------FTMLGRNCPHLERLDLE 354 (483)
T ss_pred hcccCCCCCchHH--HH---HHhcCCCceEEEeccccchhhhhh-------------------hhhhhcCChhhhhhccc
Confidence 6666665433110 00 112345666666666665322110 00112356789999998
Q ss_pred CCCCc---ccCcccCCCCCCCEEeccCCCCcccC-CC------CCCCccceeecccCccCcc
Q 047103 790 RNNFE---SLPSGISHLSRLKWLHLFDCIMLQSS-LP------ELPPHLVMLDARNCKRLQS 841 (1095)
Q Consensus 790 ~n~l~---~lp~~l~~L~~L~~L~L~~c~~l~~~-lp------~l~~sL~~L~l~~c~~L~~ 841 (1095)
++... ++-.--.+++.|+.|.|++|...+.. +. .-...|..|.+.+||.+..
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 88554 23333467899999999999876551 11 1235788999999986543
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.51 E-value=0.00039 Score=73.86 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=74.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC 277 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 277 (1095)
+.+-|||++|+|||+||+++++.... .++... ... . +.++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-------~~~----~-----------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-------FFN----E-----------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-------hhc----h-----------------------hHHh-
Confidence 56889999999999999998775421 222100 000 0 0011
Q ss_pred CeEEEEecCCCChhh--HHHHhcCCCCCCCCCEEEEEeCch-------HHHHhcCcceEEEccCCChhHHHHHHHHhhhc
Q 047103 278 MKVLIVLDNVSKVGQ--LEGLIGGLDQFGLGSRIIITTRDK-------RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFK 348 (1095)
Q Consensus 278 kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~-------~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~ 348 (1095)
..-++++||+....+ +-.+...+. ..|..||+|++.. ++...+....++++++++.++-.+++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224678899975432 222222222 3466899998743 23344444568999999999988888776632
Q ss_pred cCCCCcchHHHHHHHHHHhCC
Q 047103 349 ENRCPKDLIGHSWRVVRYAKG 369 (1095)
Q Consensus 349 ~~~~~~~~~~l~~~i~~~~~G 369 (1095)
..- .--++...-+++++.|
T Consensus 163 ~~l--~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 163 SSV--TISRQIIDFLLVNLPR 181 (214)
T ss_pred cCC--CCCHHHHHHHHHHccC
Confidence 111 1113444555555544
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0027 Score=76.90 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=105.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ..+++.....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~----------~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT----------ATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC----------CCcccccHHH
Confidence 345678999999999999988753 2345678999999999999999998754211000 0001111111
Q ss_pred HHHHHHhcCC-C-cccc-----CCCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe-
Q 047103 249 KQILSTILSE-K-LEVA-----GPNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT- 313 (1095)
Q Consensus 249 ~~ll~~l~~~-~-~~~~-----~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT- 313 (1095)
+.+...-+.. + ...+ +.+..+.+.+. ...++-++|+|++... ...+.|+..+........+|++|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 1111000000 0 0000 00001111111 1234558899999753 45666666665545566666555
Q ss_pred CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 314 RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 314 R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
....+...+ .-...|++..++.++..+.+.+.+-..... --.+....|++.++|-+-
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 444444332 234689999999999888887765433221 113445667788887653
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0017 Score=81.78 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=105.2
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-...... . ..++...-.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~-~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------S-TPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------C-CCCcccHHH
Confidence 3445789999999999999887532 235678999999999999999998763210000 0 001111111
Q ss_pred HHHHHHhcCCCc---cccC-----CCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe
Q 047103 249 KQILSTILSEKL---EVAG-----PNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT 313 (1095)
Q Consensus 249 ~~ll~~l~~~~~---~~~~-----~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 313 (1095)
+.+... ..... .++. .+..+.+++. ..+++-++|||+++.. ...+.|+..+......+.+|++|
T Consensus 79 ~~~~~g-~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 79 VALAPG-GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHcC-CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 111110 00000 0000 0001111111 2234456889999764 34666666655545566666555
Q ss_pred Cc-hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 314 RD-KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 314 R~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.+ ..+...+ .-...|++..++.++..+.+.+.+-.... ..-.+....|++.++|-+.
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 43 3454432 23478999999999988888765422221 1123445677888888663
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0012 Score=80.78 Aligned_cols=181 Identities=13% Similarity=0.221 Sum_probs=104.4
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCc----eE------------EEE
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEG----TC------------FVA 232 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~----~~------------~v~ 232 (1095)
|....+++|-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-.. .| ++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 344578999999999999988754 234567899999999999999999875321000 00 000
Q ss_pred ecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEE
Q 047103 233 DVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRII 310 (1095)
Q Consensus 233 ~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrII 310 (1095)
+...+ . .++..+ +++...+.. .-..+++-++|+|++... ..++.|+..+........+|
T Consensus 92 -idaas-n-~~vd~I-ReLie~~~~---------------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 92 -MDAAS-N-NGVDEI-RELIENVKN---------------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred -Eeccc-c-CCHHHH-HHHHHHHHh---------------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 00000 0 111111 111111100 001245568899999754 35677766655444455555
Q ss_pred E-EeCchHHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 311 I-TTRDKRVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 311 i-TTR~~~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
+ ||+...+... ......+++.+++.++..+.+...+-.... .--.+.+..+++.++|-+-
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 4 4444455433 223468999999999998888775533221 1123446678888888553
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00095 Score=85.30 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 150 LIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 150 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..++...++..+- .....+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++.
T Consensus 161 ~l~~~~~~l~~~a-----~~~~~~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 161 TLEEFGTNLTKEA-----IDGNLDPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred HHHHHHHHHHHHH-----HcCCCCCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5566666655543 11223569999999999999997643 33456999999999999999999865
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0027 Score=75.71 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=107.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc-CCCc--eEEEE-------------
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG-GFEG--TCFVA------------- 232 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~--~~~v~------------- 232 (1095)
|...+++||-+..++.+...+..+ .-..++.++|..|+||||+|+.+++.+-. .... -|..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 345678999999999999888653 23456789999999999999999987531 1000 00000
Q ss_pred --ecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCE
Q 047103 233 --DVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 233 --~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 308 (1095)
.... ... .++..+...+ ..... .-..+++-++|+|+++.. +..+.|+..+....+..+
T Consensus 88 v~elda-as~-~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 88 IIEMDA-ASN-RGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred EEEecc-ccc-cCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 0000 000 1222222211 11000 001134568899999754 346666666655556677
Q ss_pred EEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 309 IIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 309 IIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
+|++|.+.. +.... .-...+++.+++.++..+.+...+-..+.. --.+.+..+++.++|-+--
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~ 214 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRD 214 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHH
Confidence 777776642 22211 224688999999999988887665332221 1235667888888887643
No 146
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.46 E-value=0.0011 Score=78.78 Aligned_cols=155 Identities=19% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCCcccchhHHHHHHHhhhc---c----CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCM---E----LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~---~----~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~ 243 (1095)
..+++.|.+..++.+...... . .-...+-|.++|++|.|||++|+++++.+.-.| +..+.........+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 346788988777666653211 0 003356788999999999999999999865332 11111110000000
Q ss_pred H-HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhh--------------HHHHhcCCCCCCCCCE
Q 047103 244 L-EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ--------------LEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 244 l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--------------l~~l~~~~~~~~~gsr 308 (1095)
- ....+++ ++..-...+.+|++|+++.... +..+...+.....+--
T Consensus 302 ese~~l~~~-------------------f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 302 ESESRMRQM-------------------IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred hHHHHHHHH-------------------HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 0 0111111 2211124578999999864210 1222222222223334
Q ss_pred EEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhhhc
Q 047103 309 IIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYAFK 348 (1095)
Q Consensus 309 IIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~ 348 (1095)
||.||...+. ...-..+..+.++..+.++-.++|..+.-+
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 5557765532 222245678999999999999999887643
No 147
>CHL00181 cbbX CbbX; Provisional
Probab=97.46 E-value=0.0021 Score=71.52 Aligned_cols=130 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC-C-CceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG-F-EGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~-F-~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
..+.++|.+|+||||+|+.++...... + ...-|+.. .... +...+.+.. .......++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v---------~~~~----l~~~~~g~~----~~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV---------TRDD----LVGQYIGHT----APKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe---------cHHH----HHHHHhccc----hHHHHHHHHHc-
Confidence 347799999999999999998864321 1 11123321 1111 222211100 00001112221
Q ss_pred cCCeEEEEecCCCCh-----------hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhc--------CcceEEEccCCChh
Q 047103 276 RCMKVLIVLDNVSKV-----------GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKF--------GVKKIYRVNGLQFD 336 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~v~~L~~~ 336 (1095)
..-+|++|++... +..+.|...+.....+-+||.++....+.... .....+++++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2348889999642 33455555554444556777777544332111 23468899999999
Q ss_pred HHHHHHHHhhh
Q 047103 337 VALEQFCNYAF 347 (1095)
Q Consensus 337 ea~~Lf~~~af 347 (1095)
|..+++...+-
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=2.5e-06 Score=99.45 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=76.8
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCC
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSEC 647 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c 647 (1095)
.|...+.++|.+...-..+.-++.|+.|+|+.|+....- .+..+++|++|||++|. +..+|. +...+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~---------l~~~g- 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQ---------LSMVG- 231 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccc---------cchhh-
Confidence 455666666644333334566677777777777654432 56677778888887743 333332 11122
Q ss_pred cccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCcc-ccccCCCCCCCEEEccCcccc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSL-STNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~l-p~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
..|..|.|++|.++.+- .+.+|.+|+.||+++|-+.+.- -..+..|..|+.|+|.||++-
T Consensus 232 ----------c~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 232 ----------CKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ----------hhheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 23567788888777664 3677888888888876554421 112445677778888877653
No 149
>CHL00176 ftsH cell division protein; Validated
Probab=97.43 E-value=0.0013 Score=80.61 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
...++++|.++..+++.+++..-. ....+-|.++|++|.|||+||++++...... |+. +
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i------ 247 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I------ 247 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c------
Confidence 345679999988888776653211 0224568899999999999999999875322 222 1
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCCC-
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQF- 303 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~- 303 (1095)
....+..... +. ....+...+.......+.+|++||++... .+..++..++.+
T Consensus 248 --s~s~f~~~~~---g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 248 --SGSEFVEMFV---GV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred --cHHHHHHHhh---hh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 0011111000 00 00011122334445567899999996431 144555444332
Q ss_pred -CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhhh
Q 047103 304 -GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 304 -~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
..|-.||.||...+.+.. -..+..+.++..+.++-.+++..++-
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 234566667766544322 12457889999999999999988763
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.0025 Score=81.39 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 150 LIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 150 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+++...++..+. -+...+.++||+.+++++.+.|.... ...+.++|.+|+||||||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~-----r~~~l~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERA-----EQGKLDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHH-----hcCCCCcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4555555555544 12334679999999999999997643 334569999999999999999998754
No 151
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.37 E-value=0.0028 Score=69.27 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=108.0
Q ss_pred Ccccc---hhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceE-EEEecccccCCCCCHHHHHH
Q 047103 174 GLVGL---NSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTC-FVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 174 ~~vGr---~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~-~v~~v~~~~~~~~~l~~l~~ 249 (1095)
..||- ...++++.++|..........+.|+|.+|+||||+++++.......++.-. -+.++.-.....++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 44554 344566677776655456778999999999999999999987544443210 00111111333378899999
Q ss_pred HHHHHhcCCCccccCC-CchHHHHhhhcCC-eEEEEecCCCChh------h------HHHHhcCCCCCCCCCEEEEEeCc
Q 047103 250 QILSTILSEKLEVAGP-NIPQFTKGRFRCM-KVLIVLDNVSKVG------Q------LEGLIGGLDQFGLGSRIIITTRD 315 (1095)
Q Consensus 250 ~ll~~l~~~~~~~~~~-~~~~~l~~~L~~k-r~LlVLDdv~~~~------~------l~~l~~~~~~~~~gsrIIiTTR~ 315 (1095)
.|+.+++......+.. .....+.+.++.- -=+||+|.+.+.- | +..|...+ .=+-|.+-|++
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL----~ipiV~vGt~~ 190 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL----QIPIVGVGTRE 190 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc----CCCeEEeccHH
Confidence 9999988765433222 2222334555543 3488999996631 1 22332222 22445555554
Q ss_pred h--------HHHHhcCcceEEEccCCChhH-HHHHHHHhh--hccCCCC-cchHHHHHHHHHHhCCCC
Q 047103 316 K--------RVLEKFGVKKIYRVNGLQFDV-ALEQFCNYA--FKENRCP-KDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 316 ~--------~v~~~~~~~~~~~v~~L~~~e-a~~Lf~~~a--f~~~~~~-~~~~~l~~~i~~~~~GlP 371 (1095)
. +++..+ .++.++....++ ...|+.... ..-..++ -...+++..|...++|+.
T Consensus 191 A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 191 AYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 3 333322 466777777644 444443221 1111111 234678888888888865
No 152
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=7.4e-05 Score=79.13 Aligned_cols=188 Identities=18% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCCccccEeeccCCccC--ccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEE
Q 047103 587 SETPNLDRMNLWNCTGL--ALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELK 664 (1095)
Q Consensus 587 ~~l~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~ 664 (1095)
+.++.++.|||.+|.+. .++...+.+||.|++|+|+.|..... | +.+|....+|+.|-
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I----------------~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----I----------------KSLPLPLKNLRVLV 127 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----c----------------ccCcccccceEEEE
Confidence 45677888888887653 23444566888888888887543221 2 23333345677788
Q ss_pred ecCCCCc--cccCccCCCCCCcEEeccCCCCCCccc--cccCC-CCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 665 LRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLS--TNICK-LKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 665 L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp--~~l~~-L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
|.|+.+. .+.+.+..+|.++.|.++.|+.-...- ..+.. -+.+++|.+.+|...... ..-.--.-++++.
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-----~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-----NKNKLSRIFPNVN 202 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH-----HHHhHHhhcccch
Confidence 8887765 555667778888888888764221110 00111 123444444444321100 0000011234555
Q ss_pred EEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc--ccCCCCCCCEEeccCCCCc
Q 047103 740 ELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS--GISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~L~~L~~L~L~~c~~l 817 (1095)
.+-+..|++...- --.....++.+..|+|+.|+|.++.+ .+..+++|..|.++++|.+
T Consensus 203 sv~v~e~PlK~~s--------------------~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 203 SVFVCEGPLKTES--------------------SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred heeeecCcccchh--------------------hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555554422111 11234456777789999999986653 6788999999999999877
Q ss_pred cc
Q 047103 818 QS 819 (1095)
Q Consensus 818 ~~ 819 (1095)
..
T Consensus 263 d~ 264 (418)
T KOG2982|consen 263 DP 264 (418)
T ss_pred cc
Confidence 65
No 153
>PRK12377 putative replication protein; Provisional
Probab=97.36 E-value=0.0025 Score=68.91 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=29.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+.|+|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999999876655566664
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.00041 Score=76.32 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=56.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC 277 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 277 (1095)
..+.+||..|+|||.||.++++.+..+-..++|+. ...+...+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC
Confidence 45789999999999999999999876544445553 2334444433322111 1111123444444
Q ss_pred CeEEEEecCCCC--hhhH--HHHhcCCCC-CCCCCEEEEEeCch
Q 047103 278 MKVLIVLDNVSK--VGQL--EGLIGGLDQ-FGLGSRIIITTRDK 316 (1095)
Q Consensus 278 kr~LlVLDdv~~--~~~l--~~l~~~~~~-~~~gsrIIiTTR~~ 316 (1095)
-. ||||||+.. ...| +.+..-+.. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 899999932 2222 222221111 13455688888643
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0055 Score=75.19 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=107.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+....+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-.. .+.. ...+.+....
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~---------~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP---------TPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC---------CCCCCcccHH
Confidence 3455789999999999999887642 23567899999999999999999976432 1100 0000222222
Q ss_pred HHHHHHHhcCCCccccC--CCchHHHHh---hh-----cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc
Q 047103 248 QKQILSTILSEKLEVAG--PNIPQFTKG---RF-----RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD 315 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~--~~~~~~l~~---~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 315 (1095)
.+.+...........+. ....+.+++ .+ .+++-++|+|+++.. ...+.|+..+........+|++|.+
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 33332221111000000 000111111 11 234557899999864 4466666665543444555555544
Q ss_pred h-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 316 K-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 316 ~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
. .+...+ .....+++..++.++..+.+.+.+-..... --.+.+..+++.++|.+..
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~ 218 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRD 218 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3 343332 234678888999998888777765332211 1124567888888887643
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0037 Score=76.63 Aligned_cols=176 Identities=13% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc-----------------------CCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG-----------------------GFE 226 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~-----------------------~F~ 226 (1095)
...++++|-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-. +|+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 44678999999999999988653 23456889999999999999999987631 111
Q ss_pred ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCC
Q 047103 227 GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFG 304 (1095)
Q Consensus 227 ~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~ 304 (1095)
... +. . ... .++..+. ++..++... -..+++-++|+|+++... ..+.|+..+....
T Consensus 92 ~~~-ld-~---~~~-~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHE-LD-A---ASN-NSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEE-ec-c---ccc-CCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 111 00 0 000 1122222 111111100 011234577999987643 4666666555444
Q ss_pred CCCEEEEEe-CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 305 LGSRIIITT-RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 305 ~gsrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
.++.+|++| +...+...+ ....+++++.++.++..+.+...+-..+.. --.+.+..++..++|-.
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdl 216 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGM 216 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 566766554 445554432 234689999999999988887765433221 12244567778887754
No 157
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0059 Score=72.84 Aligned_cols=180 Identities=10% Similarity=0.093 Sum_probs=103.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC---C-C-----------------c
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG---F-E-----------------G 227 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---F-~-----------------~ 227 (1095)
|....+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.++..+-.. . + .
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 3455789999999999999887642 34566789999999999999999875311 0 0 0
Q ss_pred eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCC
Q 047103 228 TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGL 305 (1095)
Q Consensus 228 ~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 305 (1095)
...+. . ... .++..+ +.+...+.. .-..+++-++|+|+++.. ...+.|+..+....+
T Consensus 90 ~~eid---a-as~-~gvd~i-r~I~~~~~~---------------~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 90 LIEID---A-ASN-RGIDDI-RALRDAVSY---------------TPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred EEEEe---C-ccC-CCHHHH-HHHHHHHHh---------------CcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 00110 0 000 111111 111111100 001245668999999754 345666655554444
Q ss_pred CCEEEEEe-CchHHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 306 GSRIIITT-RDKRVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 306 gsrIIiTT-R~~~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
...+|++| +...+... ......+++.+++.++..+.+...+-.... .--.+.+..+++.++|.+..
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~ 216 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRD 216 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 55666555 43334332 122357899999999988888776533221 11234456677788886543
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.003 Score=81.06 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 150 LIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 150 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+++...++..+. .+...+.+|||+.+++++...|.... ...+.++|.+|+|||+||+.++.++..
T Consensus 155 ~l~~~~~~l~~~~-----~~~~~~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 155 ALEKYARDLTERA-----REGKLDPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHhhhHHHHh-----hCCCCCcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4555555555444 22334679999999999999987643 344558999999999999999998754
No 159
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0067 Score=73.58 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=107.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|....+++|-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... .+.+...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~------------~pC~~C~ 77 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP------------MPCGECS 77 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC------------CCCccch
Confidence 345678999999999999988753 234568899999999999999999975321 000 0000001
Q ss_pred HHHHHHHHhcCCCccccCC--CchHHHHhh--------hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeC
Q 047103 247 LQKQILSTILSEKLEVAGP--NIPQFTKGR--------FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTR 314 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~--~~~~~l~~~--------L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 314 (1095)
-.+.+...-...-...++. ...+.+++. ..+++-++|+|++... ..++.|+..+....+...+|.+|.
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 1111111000000000100 001111111 1245567889999754 347777776665455666666554
Q ss_pred c-hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 315 D-KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 315 ~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
+ ..+...+ .....++...++.++..+.+...+...... --.+.+..+++.++|.+-
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVR 215 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 4 3443332 223578999999999988887766443321 123555667888888664
No 160
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.28 E-value=0.003 Score=69.91 Aligned_cols=163 Identities=19% Similarity=0.220 Sum_probs=99.6
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHH
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQI 251 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~l 251 (1095)
.+.+-+|+..++.+..++...+..-...|-|+|-+|.|||.+.+.+.+... ...+|+..+ + .+....+...|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~-e----cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCV-E----CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehH-H----hccHHHHHHHH
Confidence 467889999999999999776522345568999999999999999999763 234788633 2 26777888888
Q ss_pred HHHhcCCCccc---cC--CCchHHHH---h--hhc--CCeEEEEecCCCChhhHHH-----H---hcCCCCCCCCCEEEE
Q 047103 252 LSTILSEKLEV---AG--PNIPQFTK---G--RFR--CMKVLIVLDNVSKVGQLEG-----L---IGGLDQFGLGSRIII 311 (1095)
Q Consensus 252 l~~l~~~~~~~---~~--~~~~~~l~---~--~L~--~kr~LlVLDdv~~~~~l~~-----l---~~~~~~~~~gsrIIi 311 (1095)
+.+.+..+.+. .+ ++....+. + ... ++.++||||+++...+.+. + -..++ .+. -+|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEE
Confidence 88864211111 11 22222221 1 111 4699999999987554221 1 11111 122 2333
Q ss_pred EeCch---HHHHhcCcc--eEEEccCCChhHHHHHHHHh
Q 047103 312 TTRDK---RVLEKFGVK--KIYRVNGLQFDVALEQFCNY 345 (1095)
Q Consensus 312 TTR~~---~v~~~~~~~--~~~~v~~L~~~ea~~Lf~~~ 345 (1095)
++--. .-...+|.- .+...+.-+.+|-.+++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 33322 222224543 35677888889998888553
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0029 Score=76.06 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=79.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
..+.|||..|.|||.|++++++.+...+. .+.|+. ...+..++...+... ....+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 45889999999999999999998765432 334443 233444444433221 112244444
Q ss_pred cCCeEEEEecCCCCh---hhH----HHHhcCCCCCCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHH
Q 047103 276 RCMKVLIVLDNVSKV---GQL----EGLIGGLDQFGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVAL 339 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~---~~l----~~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~ 339 (1095)
++- =+|||||+... +.+ -.+...+. ..|..|||||+.. .+...+...-+++++..+.+.-.
T Consensus 376 ~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 REM-DILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred hcC-CEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 432 36888999643 111 12222221 2355688888753 23344555678999999999999
Q ss_pred HHHHHhhhc
Q 047103 340 EQFCNYAFK 348 (1095)
Q Consensus 340 ~Lf~~~af~ 348 (1095)
+++.+++-.
T Consensus 453 aIL~kka~~ 461 (617)
T PRK14086 453 AILRKKAVQ 461 (617)
T ss_pred HHHHHHHHh
Confidence 999988743
No 162
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.23 E-value=0.002 Score=77.85 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=86.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhcc---------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCME---------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
....++++|.+...+++.+++..- .....+-+.++|++|.|||+||++++....-.| +. +
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i----- 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I----- 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c-----
Confidence 344567899988877776655311 012344588999999999999999998753322 21 1
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCCC
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQF 303 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~ 303 (1095)
....+.... .+. ....+.+.+.......+.+|++||++... .+..++..++..
T Consensus 120 ---~~~~~~~~~---~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 120 ---SGSDFVEMF---VGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ---cHHHHHHHH---hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 111111110 000 00011111223233456799999995421 123344333322
Q ss_pred --CCCCEEEEEeCchHHH-----HhcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 304 --GLGSRIIITTRDKRVL-----EKFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 304 --~~gsrIIiTTR~~~v~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
..+-.||.||...+.+ ..-..+..++++..+.++-.++|..+.-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 2233455566554322 1123567899999999999999987763
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0032 Score=76.92 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=101.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...+++||-+..++.|...+..+ .-...+.++|..|+||||+|+.+++.+-..-.. ...+++.....
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~----------~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGL----------TAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC----------CCCCCCccHHH
Confidence 345678999999999999988653 234567899999999999999999875321000 00001111111
Q ss_pred HHHHHHhcCCCccccCC-----CchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEe-Cc
Q 047103 249 KQILSTILSEKLEVAGP-----NIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITT-RD 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~-----~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~ 315 (1095)
+.+...-.......++. +-.+.+.+.+ ..++-++|+|+|+... ..+.|+..+....+...+|++| ..
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 11111100000000000 0011111111 2334478899997543 4566665554444556666554 44
Q ss_pred hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 316 KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 316 ~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
..+.... .....++++.++.++..+.+...+-..+. .--.+....+++.++|..
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSM 214 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCH
Confidence 4454332 22357888999998888777665422221 112344566777777744
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0074 Score=68.33 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=59.9
Q ss_pred CeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCC
Q 047103 278 MKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCP 353 (1095)
Q Consensus 278 kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~ 353 (1095)
.|++ |+|+++.. ...+.|+..+.....++.+|+||.+.+ ++... .-...+.+.+++.+++.+.+.... ..
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~---- 180 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE---- 180 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc----
Confidence 4555 56999764 446666655554456777887777764 44332 224678999999999999887653 11
Q ss_pred cchHHHHHHHHHHhCCCCcceeee
Q 047103 354 KDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 354 ~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
...+.+..++..++|.|+....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233456788999999754433
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.21 E-value=0.0017 Score=81.14 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 150 LIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 150 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+++...++..+-. ....+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++.
T Consensus 168 ~l~~~~~~l~~~a~-----~g~~~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLAR-----VGGIDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHH-----cCCCCcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 55555555554331 1223569999999999999887743 23345899999999999999998753
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.0016 Score=63.28 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHh
Q 047103 200 VGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56999999999999999999875
No 167
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0067 Score=73.82 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=106.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-.. ...+.+.....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~----------~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP----------DGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----------CCCCCCccHHH
Confidence 3456789999999999999987642 35667789999999999999999865311000 00001111222
Q ss_pred HHHHHHhcCCCccccC-----CCchHHHHhh-----hcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEe-Cc
Q 047103 249 KQILSTILSEKLEVAG-----PNIPQFTKGR-----FRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITT-RD 315 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~-----~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~ 315 (1095)
+.+.......-...++ ....+.+.+. ..+++-++|+|++... ..++.|+..+........+|++| ..
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 2222111110011111 0111112222 1344567899999754 45667766555434445555544 44
Q ss_pred hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 316 KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 316 ~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
..+...+ .-...++...++.++..+.+...+-..+... -.+....+++.++|-+.
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMR 215 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 3333322 2235788999999998888877663332211 13456677788877654
No 168
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.14 E-value=0.00036 Score=53.53 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 781 SSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 781 ~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
++|++|+|++|+|+.+|..+.+|++|+.|++++|+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 579999999999999998899999999999999963
No 169
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00018 Score=76.35 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=54.4
Q ss_pred CcceEEcccCCCCCC-------CCCCcceeecccCCCCccccCCC-CCCccccEeeccCCccC-ccccccccCCCCcceE
Q 047103 549 ELRYLHWHQYPLKNE-------DKAPKLKYIDLNHSSNLTRIPEP-SETPNLDRMNLWNCTGL-ALIPSYIQNFNNLGNL 619 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~~l-------~~l~~L~~L~Ls~n~~l~~~p~~-~~l~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L 619 (1095)
.++.|++.+|.+... .+||.|++|+|+.|.+...+..+ ..+.||+.|.|.|.... ....+++..+|+++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 567777777776553 78899999999998776655544 45678888888775432 2244566788888888
Q ss_pred eccCC
Q 047103 620 SLEGC 624 (1095)
Q Consensus 620 ~L~~c 624 (1095)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 88875
No 170
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0051 Score=66.41 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=28.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998766544555553
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0039 Score=72.67 Aligned_cols=119 Identities=22% Similarity=0.164 Sum_probs=79.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCM 278 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 278 (1095)
++.|.|+=++||||+++.+.....+. .+++......... ..+ .+.+.. +...-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l----~d~~~~----------------~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IEL----LDLLRA----------------YIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhH----HHHHHH----------------HHHhhccC
Confidence 99999999999999997776665444 4444321111111 111 111111 11111117
Q ss_pred eEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHh------cCcceEEEccCCChhHHHHHH
Q 047103 279 KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEK------FGVKKIYRVNGLQFDVALEQF 342 (1095)
Q Consensus 279 r~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~v~~L~~~ea~~Lf 342 (1095)
+.+|+||.|.....|+..+..+.+.++. +|+||+-+..+... .|-...+++-+|+-.|-..+-
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8899999999999999988888777776 89999887765432 244568999999999987654
No 172
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.012 Score=64.94 Aligned_cols=173 Identities=25% Similarity=0.289 Sum_probs=103.6
Q ss_pred CCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
...++=|.++.+++|.+.....- -+..+=|.+||++|.|||-||++|+++... .|+.++..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvgS---- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVGS---- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEeccH----
Confidence 34566788999999888764321 134566789999999999999999998543 45553321
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc-CCeEEEEecCCCChh--------------h--HHHHhcCCCCC
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR-CMKVLIVLDNVSKVG--------------Q--LEGLIGGLDQF 303 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~--------------~--l~~l~~~~~~~ 303 (1095)
.-+|+-| + ++..+.+.+.+.-+ +....|.+|.++... | +-.|+..++.|
T Consensus 220 ----ElVqKYi----G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 ----ELVQKYI----G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ----HHHHHHh----c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 1122211 1 12222222222223 347888899885421 1 34455556555
Q ss_pred CC--CCEEEEEeCchHHHH-----hcCcceEEEccCCChhHHHHHHHHhhhccCC-CCcchHHHHHHHHHHhCCC
Q 047103 304 GL--GSRIIITTRDKRVLE-----KFGVKKIYRVNGLQFDVALEQFCNYAFKENR-CPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 304 ~~--gsrIIiTTR~~~v~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 370 (1095)
.+ .-|||..|--.+++. --..+..++++..+.+.-.++|.-|+-+-.. ..-+++. +++.+.|.
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~ 356 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGF 356 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCC
Confidence 43 357887776555433 2245788999988888888999888754332 2234544 44445543
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0011 Score=64.73 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=27.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
+.+.|+|.+|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5688999999999999999999876554334444
No 174
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.01 E-value=0.0057 Score=65.91 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=112.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh--cCCCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS--GGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~--~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|...++++|-+..+..+.+.+.. ........+|++|.|||+-|++++..+- +-|.+++.=.|+..... -++.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG--isvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG--ISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc--ccchh
Confidence 44567899999999999888865 3467788999999999999999998753 23544433222221111 11111
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCe-EEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCchHHHH-hc
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMK-VLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDKRVLE-KF 322 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~v~~-~~ 322 (1095)
--..-.+++........+. ..+. -.+|||+++... .|..|......+...+|.|+.|-.-.... ..
T Consensus 107 ~Kik~fakl~~~~~~~~~~----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRSDGY----------PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhhcCHHHHhhccccccCC----------CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 1111111111110000000 0112 367899998754 58888887777777778666555443221 11
Q ss_pred -CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCC-CCcceee
Q 047103 323 -GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKG-NPLALKV 376 (1095)
Q Consensus 323 -~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G-lPLal~~ 376 (1095)
.-..-|..+.|.+++..+-+..-|-.++..- ..+..+.|+++++| +--|+.+
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 1224688899999999888888775544322 23556678888877 3344333
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00024 Score=87.68 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=74.7
Q ss_pred CCCcEEeccCCCCCC-ccccccC-CCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCC
Q 047103 681 PDLETLEMSNCYSLK-SLSTNIC-KLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGN 758 (1095)
Q Consensus 681 ~~L~~L~Ls~~~~l~-~lp~~l~-~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~ 758 (1095)
.+|++|+++|..... .-|..++ .||+|++|.+++-.+... ++-.-..++++|..||++++++... ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~------dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND------DFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch------hHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 355566665533221 1122232 367777777766443321 1111234567777777777765543 55777
Q ss_pred CccccccccCCCcccC----cccCCCCCCCeeeCCCCCCcccC-------cccCCCCCCCEEeccCCCC
Q 047103 759 LKALEFLSAAGIIKIP----RDIGCLSSLVELDLSRNNFESLP-------SGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 759 L~~L~~L~l~~~~~lp----~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~L~~L~~L~L~~c~~ 816 (1095)
|++|+.|.+.++.-.+ ..+.+|++|+.||+|.......+ +.-..||+|+.||.++...
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7777777766654322 24677888888888887554333 1234588888888887653
No 176
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.0067 Score=66.51 Aligned_cols=35 Identities=26% Similarity=0.120 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.-+.++|.+|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999998765544455553
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.0079 Score=76.28 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=84.0
Q ss_pred CCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|++..++++.+++...- -...+-|.++|.+|.||||||+++++.....| +.+. ..+...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~ 250 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMS 250 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhc
Confidence 345678999999999988764310 02346688999999999999999999765433 2221 111110
Q ss_pred CCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCCCC-C
Q 047103 240 TGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLDQF-G 304 (1095)
Q Consensus 240 ~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~-~ 304 (1095)
...+ ...-.+ ..+.........+|+||+++... ....|...+... .
T Consensus 251 ~~~g~~~~~l~-------------------~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 251 KYYGESEERLR-------------------EIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred ccccHHHHHHH-------------------HHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 0000 001111 11222223456789999985421 122333322221 2
Q ss_pred CCCEEEE-EeCchHHH-Hh----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 305 LGSRIII-TTRDKRVL-EK----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 305 ~gsrIIi-TTR~~~v~-~~----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+..+|| ||....-+ .. ...+..+.++..+.++..+++..+.
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 3344554 44433211 11 1234678888889998888887544
No 178
>PRK10536 hypothetical protein; Provisional
Probab=96.93 E-value=0.0033 Score=67.36 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH-H-hcCCCceE
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ-F-SGGFEGTC 229 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~-~-~~~F~~~~ 229 (1095)
+...+.++......+...+.. ..++.+.|.+|.|||+||.++..+ + ...|+..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 345677888888888887743 248999999999999999998884 3 44454433
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.92 E-value=0.01 Score=76.04 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCCcccchhHHHHHHHhhhcc------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 172 YNGLVGLNSRIEQIKPLLCME------LSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...++|-+..++.|...+... .+....++.++|+.|+||||||+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356899999999988877542 1122357889999999999999999987643
No 180
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.90 E-value=0.0019 Score=70.19 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=58.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCccc----cCCC-----
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLEV----AGPN----- 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~~----~~~~----- 266 (1095)
-+.++|.|-+|.||||||+.++++++.+|+..+++.-+.+.. ..+..+.+++... ......-. +...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 356899999999999999999999988888888777665532 3355555555543 11111000 1100
Q ss_pred ---chHHHHhhh---cCCeEEEEecCCCChhh
Q 047103 267 ---IPQFTKGRF---RCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 267 ---~~~~l~~~L---~~kr~LlVLDdv~~~~~ 292 (1095)
..-.+.+++ +++.+|+|+||+....+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 011123334 37899999999966543
No 181
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0061 Score=64.98 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=98.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|....++||-+...+++.-.+.... +...--+.++|++|.||||||..+++.+...+... ....-.++.++.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDla- 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLA- 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHH-
Confidence 4456789999999888877765432 24466788999999999999999999876544211 111111112222
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhh-HH-HHhcCCC--------CCCCCCEEE------
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ-LE-GLIGGLD--------QFGLGSRII------ 310 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-l~-~l~~~~~--------~~~~gsrII------ 310 (1095)
.++..+... .+ +.+|.+..... .+ -|.++.. ..|+++|.|
T Consensus 96 ---aiLt~Le~~--------------------DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 96 ---AILTNLEEG--------------------DV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---HHHhcCCcC--------------------Ce-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 222222222 22 22344422110 11 1111111 124455543
Q ss_pred -----EEeCchHHHHhc--CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 311 -----ITTRDKRVLEKF--GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 311 -----iTTR~~~v~~~~--~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
-|||.-.+..-+ ...-+.+++.-+.+|-.++..+.|-.-+. +--.+-+.+|+++..|-|--
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHH
Confidence 488866543222 12347788889999999999888732111 12245677899999999953
No 182
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.88 E-value=0.0024 Score=73.74 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc--CCCceEEEE
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG--GFEGTCFVA 232 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~--~F~~~~~v~ 232 (1095)
..++++.+..++.+...|... +.|.++|++|+||||+|+++++.+.. .|+.+.|+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 356888888999998888643 46778999999999999999998743 455666665
No 183
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.018 Score=65.50 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=103.2
Q ss_pred CCCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCc--eEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEG--TCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~--~~~v~~v~~~~~~~~~l~~ 246 (1095)
..+..++||+.++..+.+++...- .+..+.+-|.|-+|.|||.+...++.+....... ++++.... -.....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s-----l~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS-----LTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc-----ccchHH
Confidence 456789999999999999886532 2567888999999999999999999976544332 34553221 122345
Q ss_pred HHHHHHHHh-cCCCccccCCCchHHHHhhhcCC--eEEEEecCCCChhh--HHHHhcCCCCC-CCCCEEEEEeCch----
Q 047103 247 LQKQILSTI-LSEKLEVAGPNIPQFTKGRFRCM--KVLIVLDNVSKVGQ--LEGLIGGLDQF-GLGSRIIITTRDK---- 316 (1095)
Q Consensus 247 l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR~~---- 316 (1095)
+...|.+.+ ........+.+..+.+....... -+|+|||..+.... -+.+...+.|. -++||+|+.---.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 566666554 22222222222233344444433 58999999875432 22222233332 3677877643211
Q ss_pred --HHHHhcC-----cceEEEccCCChhHHHHHHHHhh
Q 047103 317 --RVLEKFG-----VKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 317 --~v~~~~~-----~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..+..+. .......++-+.++-.++|..+.
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1111111 23567788889999999998776
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0066 Score=69.52 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=82.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
....+-|||..|.|||.|++++.+..........++. .........+...+... ..+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~--------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN--------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh--------hHHHHHHhh
Confidence 4678899999999999999999998877766433332 11223333444333221 122255555
Q ss_pred cCCeEEEEecCCCChhh---H-HH---HhcCCCCCCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHH
Q 047103 276 RCMKVLIVLDNVSKVGQ---L-EG---LIGGLDQFGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVAL 339 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~---l-~~---l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~ 339 (1095)
.-=++++||++-... + +. +...+. ..|-.||+|++.. ++...++..-++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 333788999954221 1 11 122222 2344899998543 34445556679999999999999
Q ss_pred HHHHHhhhc
Q 047103 340 EQFCNYAFK 348 (1095)
Q Consensus 340 ~Lf~~~af~ 348 (1095)
+++.+++-.
T Consensus 251 aiL~kka~~ 259 (408)
T COG0593 251 AILRKKAED 259 (408)
T ss_pred HHHHHHHHh
Confidence 999987643
No 185
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.84 E-value=0.0013 Score=50.50 Aligned_cols=35 Identities=40% Similarity=0.630 Sum_probs=23.2
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYS 693 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~ 693 (1095)
+|++|++++|+|+.+|..+++|++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 46677777777777776677777777777777654
No 186
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.0027 Score=69.13 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..-+.|+|.+|+|||+||.++......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 456889999999999999999987654
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.005 Score=75.04 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=44.2
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|...++++|-+..++++..++.... ....+++.|+|++|.||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44556789999999999999886543 13356899999999999999999998653
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=96.80 E-value=0.0031 Score=69.12 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=25.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
...+.|+|.+|+|||+||.++......+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34677999999999999999988754332233444
No 189
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.79 E-value=0.0036 Score=69.81 Aligned_cols=85 Identities=21% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccch--------hhhHHHH
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASS--------KWCLNEL 72 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s--------~wcl~El 72 (1095)
||||-. |-+..+|-+--.|+-.|++||||-+.+..|. +...|++-|+..|-+|.|++||-... .|--.||
T Consensus 617 ISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl 694 (832)
T KOG3678|consen 617 ISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKEL 694 (832)
T ss_pred EEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHH
Confidence 466644 3466888888899999999999999899886 56799999999999999999987653 6888888
Q ss_pred HHHHhccccCCCeEEeEEe
Q 047103 73 VKILDCKKANDQIVIPVFY 91 (1095)
Q Consensus 73 ~~i~~~~~~~~~~v~pvfy 91 (1095)
+-.++|.+ .++|||-
T Consensus 695 ~~Afe~~K----NIiPI~D 709 (832)
T KOG3678|consen 695 KCAFEHQK----NIIPIFD 709 (832)
T ss_pred HHHHHhcC----Ceeeeec
Confidence 88888864 5999983
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.01 Score=75.39 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=87.4
Q ss_pred CCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
...++.|.+...++|.+.+...- -...+-|.++|++|.|||+||+++++.....| +. ++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~-v~~---- 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IA-VRG---- 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EE-Eeh----
Confidence 34678899888888877654210 02345678999999999999999999865433 21 110
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--------------hhHHHHhcCCCCC--C
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--------------GQLEGLIGGLDQF--G 304 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~--~ 304 (1095)
.++++...++ ....+.+.+...-.....+|++|+++.. .....++..++.. .
T Consensus 521 --------~~l~~~~vGe----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 --------PEILSKWVGE----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred --------HHHhhcccCc----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 0111110000 0001111122222345689999998542 1133444444322 2
Q ss_pred CCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 305 LGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 305 ~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+--||.||...+.+.. -..+..+.++..+.++..++|..+.
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 23345556655544322 1346788999999999999997665
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.76 E-value=0.0096 Score=63.11 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=41.9
Q ss_pred ccCCCCCcccchhHHHHHHHhhhc-cCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCM-ELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.+...++++|++...+.|.+=... -.+....-+-+||..|.|||++++++.+++..+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345567899999999988653321 111335567789999999999999999987643
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.75 E-value=0.00037 Score=86.06 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=86.7
Q ss_pred ccccEeeccCCccCcc-cccccc-CCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecC
Q 047103 590 PNLDRMNLWNCTGLAL-IPSYIQ-NFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRH 667 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~-lp~~i~-~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~ 667 (1095)
.+|++|+++|...... .|..++ -||.|+.|.+.+-..... .+..+-..++||..||+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-------------------dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-------------------DFSQLCASFPNLRSLDISG 182 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-------------------hHHHHhhccCccceeecCC
Confidence 5777777777544322 222333 457777777765211110 0111123345778999999
Q ss_pred CCCccccCccCCCCCCcEEeccCCCCCC-ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCC
Q 047103 668 TPIEEVPSSIDCLPDLETLEMSNCYSLK-SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGC 746 (1095)
Q Consensus 668 n~i~~lp~~i~~l~~L~~L~Ls~~~~l~-~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~ 746 (1095)
++++.+ .++++|++|+.|.+.+-.+.. .--..+.+|++|+.||+|.-+....- ..+...-+.-..||+|+.||.++.
T Consensus 183 TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 183 TNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCc
Confidence 999988 778999999999998754433 11224678999999999986554421 112222222345889999999987
Q ss_pred CCCCC
Q 047103 747 TKLGS 751 (1095)
Q Consensus 747 ~~~~~ 751 (1095)
.....
T Consensus 261 di~~~ 265 (699)
T KOG3665|consen 261 DINEE 265 (699)
T ss_pred chhHH
Confidence 65544
No 193
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.75 E-value=0.037 Score=70.52 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=40.9
Q ss_pred CCcccchhHHHHHHHhhhcc---CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 173 NGLVGLNSRIEQIKPLLCME---LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
++++|.+..+++|.+++... ......++.++|++|+||||+|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45889999999988866432 112345789999999999999999999876544
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.74 E-value=0.027 Score=63.19 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
...+.++|||++|.|||.+|++++++....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 4578999999999999999999999876543
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.74 E-value=0.014 Score=73.98 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCCcccchhHHHHHHHhhhcc------CCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 172 YNGLVGLNSRIEQIKPLLCME------LSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...++|-+..++.+...+... .+....++.++|+.|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356899999999888877542 112345788999999999999999998763
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.021 Score=64.34 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=105.7
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC---------------CCceEEEEeccc
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG---------------FEGTCFVADVRR 236 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---------------F~~~~~v~~v~~ 236 (1095)
.++++|-+..++.+...+..+. -....-++|..|+||+|+|.++++.+-.. ++...|+.-...
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r--l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR--IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 3578999999999999887642 24788999999999999999999875221 222334331100
Q ss_pred ccCCCCCHHHHHHHHHHHhc--CCCccccCCCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCC
Q 047103 237 NSGTGGGLEHLQKQILSTIL--SEKLEVAGPNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGS 307 (1095)
Q Consensus 237 ~~~~~~~l~~l~~~ll~~l~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs 307 (1095)
... .. +....+...+ ......-..+..+.+.+.+ .+.+-++|+|+++... ..+.|+..+.... .+
T Consensus 81 ~~g--~~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 81 HQG--KL---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred ccc--cc---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 000 00 0000001111 0000000000112233332 2345678889887543 4555555444333 34
Q ss_pred EEEEEe-CchHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 308 RIIITT-RDKRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 308 rIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
.+|++| +...++... .-...+++.+++.++..+.+........ .......++..++|-|..+.
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAI 219 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHH
Confidence 555555 444444433 2346899999999999999987642111 11113577889999996543
No 197
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0051 Score=62.97 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.016 Score=68.60 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=94.4
Q ss_pred CCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCce----EEEEecccc
Q 047103 172 YNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGT----CFVADVRRN 237 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~----~~v~~v~~~ 237 (1095)
-+++=|.++..++|.+...... -...+=|..+|++|.||||+|+++++.-.-.|=.+ .|-..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v--- 509 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV--- 509 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc---
Confidence 3455568888778776543211 14567788999999999999999999866555221 000000
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-------------hhHHHHhcCCCCCC
Q 047103 238 SGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-------------GQLEGLIGGLDQFG 304 (1095)
Q Consensus 238 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~ 304 (1095)
..-++..++++++.. +--..+|.||.++.. ..+..|+..++...
T Consensus 510 ----GeSEr~ir~iF~kAR-------------------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 510 ----GESERAIREVFRKAR-------------------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred ----CchHHHHHHHHHHHh-------------------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 112233333333211 122467777766432 12566666666554
Q ss_pred CCCEEEE---EeCchHHHHh-c---CcceEEEccCCChhHHHHHHHHhhhccCCCC-cchHHHHH
Q 047103 305 LGSRIII---TTRDKRVLEK-F---GVKKIYRVNGLQFDVALEQFCNYAFKENRCP-KDLIGHSW 361 (1095)
Q Consensus 305 ~gsrIIi---TTR~~~v~~~-~---~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~ 361 (1095)
....|+| |-|...+-.. + ..+.++.|+..+.+...++|..++-+-.-.+ -++.++++
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 4444544 4444433222 2 3578899999999999999998884322222 24454443
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.038 Score=63.54 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
.....+.+.|++|.|||+||..++.. ..|+.+--+ ..... -++..-.+... +.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKii---Spe~m--iG~sEsaKc~~--------------i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKII---SPEDM--IGLSESAKCAH--------------IKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEe---ChHHc--cCccHHHHHHH--------------HHHHHHHh
Confidence 45677889999999999999999874 567643332 21111 11111111100 00113333
Q ss_pred hcCCeEEEEecCCCChhhH------------HHHhcCCCCC-CCCCE--EEEEeCchHHHHhcCc----ceEEEccCCCh
Q 047103 275 FRCMKVLIVLDNVSKVGQL------------EGLIGGLDQF-GLGSR--IIITTRDKRVLEKFGV----KKIYRVNGLQF 335 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~~l------------~~l~~~~~~~-~~gsr--IIiTTR~~~v~~~~~~----~~~~~v~~L~~ 335 (1095)
-+..--.||+||+...-+| +.|.-.+... ..|-| |+-||....++..|+. ...|+|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 4455678999999765443 3332222211 23444 5558888899998875 46899999988
Q ss_pred -hHHHHHHHHhh
Q 047103 336 -DVALEQFCNYA 346 (1095)
Q Consensus 336 -~ea~~Lf~~~a 346 (1095)
++..+.++..-
T Consensus 675 ~~~~~~vl~~~n 686 (744)
T KOG0741|consen 675 GEQLLEVLEELN 686 (744)
T ss_pred hHHHHHHHHHcc
Confidence 78888876643
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.71 E-value=0.032 Score=61.38 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|-|+|.+|+|||+||++++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998654
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.68 E-value=0.0019 Score=66.55 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=26.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..-+.|+|..|+|||.||.++.+.+..+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456889999999999999999997654333455654
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.67 E-value=0.0069 Score=77.27 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=40.3
Q ss_pred CCcccchhHHHHHHHhhhcc------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 173 NGLVGLNSRIEQIKPLLCME------LSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++|-+..++.+.+.+... ......++.++|+.|+|||.||++++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 57899999999988877431 1134567899999999999999999987643
No 203
>PRK08118 topology modulation protein; Reviewed
Probab=96.63 E-value=0.0048 Score=62.89 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh---cCCCceEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS---GGFEGTCFV 231 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~---~~F~~~~~v 231 (1095)
.|.|+|++|+||||||+.+++++. -+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 578999999999999999999864 346666653
No 204
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.57 E-value=0.036 Score=64.97 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=57.7
Q ss_pred ccchHHHHHHHhhcCChh----HHHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHhhcccccccccCCCCCcccch
Q 047103 104 IFGDAFVKFGQQFREKPE----MVQKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLKNLEKITISTDSYNGLVGLN 179 (1095)
Q Consensus 104 ~~~~~f~~~~~~~~~~~~----~~~~w~~aL~~va~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~ 179 (1095)
++..+|.+...+-.-+.+ -+++++.||-++ +. ..++++++++.+.++...... ...+-.++
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~a----dV-------~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~ 68 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQA----DV-------NVKLVKELSKSIKERALEEEP----PKGLTPRE 68 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHC----CC-------CHHHHHHHHHHHHHHHhcccc----cccCCcHH
Confidence 445566655433111222 445566666443 11 235667777777665411111 11122222
Q ss_pred hHH----HHHHHhhhccC-----CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 180 SRI----EQIKPLLCMEL-----SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 180 ~~~----~~l~~~L~~~~-----~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..+ +++.+.+.... .....+|.++|.+|+||||+|..++..+..+
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 223 34444443321 1346899999999999999999999887654
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.016 Score=67.74 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=43.1
Q ss_pred CCCCCcccchhHHHHHHHhhhccCC---------CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELS---------DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
....++=|++..+.++.+++..-.. ...|=|.++|++|.|||.||+++++++.--
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 3467889999999999887754221 335667899999999999999999986533
No 206
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.50 E-value=0.011 Score=75.97 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++|.+..++.+...+.... +....++.++|+.|+|||++|+.+...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 568999999999988886521 1224678899999999999999999876443
No 207
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.48 E-value=0.00058 Score=71.66 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred cccceeeccCCcccCCCcc--------ccCCceEEEecCCCCccc------cCccCCCCCCcEEeccCCCCCC----ccc
Q 047103 637 VSSIKINCSECVNLSEFPR--------ISGNVVELKLRHTPIEEV------PSSIDCLPDLETLEMSNCYSLK----SLS 698 (1095)
Q Consensus 637 l~~L~l~l~~c~~L~~~p~--------~~~~L~~L~L~~n~i~~l------p~~i~~l~~L~~L~Ls~~~~l~----~lp 698 (1095)
-+.|+..+.+-+.+...|. ...+|+++.+..|.|..= -..+..+++|+.|||.+|.++. .+.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 4445533444455554442 225788899999988721 1234678899999999987654 233
Q ss_pred cccCCCCCCCEEEccCccccccccccccccCccc--cCCCCCCEEEecCCCCC
Q 047103 699 TNICKLKSLRSLHLAFCEQLGKEASNIKELPSSI--ENLEGLRELQLMGCTKL 749 (1095)
Q Consensus 699 ~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l--~~l~~L~~L~L~~~~~~ 749 (1095)
..++..+.|+.|.+..|-+... +...+-..+ ...++|..|....|...
T Consensus 236 ~al~~W~~lrEL~lnDClls~~---G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNE---GVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHhcccchhhhccccchhhccc---cHHHHHHHhhhhcCCCccccccchhhhc
Confidence 4456667788888888866542 211111111 12456677766666543
No 208
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.0025 Score=61.05 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 209
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.46 E-value=0.0084 Score=62.99 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=64.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE-ecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA-DVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~-~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
.+|.|.|..|.||||++.++...+.......++.. +-.+ ... ... ..+ +.......+.....+.++..|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~-~~~----~~~---i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH-ESK----RSL---INQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc-cCc----cce---eeecccCCCccCHHHHHHHHhc
Confidence 46899999999999999998887765544444432 1111 000 000 001 1111111122334556777787
Q ss_pred CCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHH
Q 047103 277 CMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVL 319 (1095)
Q Consensus 277 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 319 (1095)
...=.+++|.+.+.+.++...... ..|-.++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 777799999999888766544332 2455677777655543
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.035 Score=68.39 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
..++|-+..++.+.+.+.... +..+.+....|+.|+|||-||++++..+-+.=+.-+- .++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR-----------~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR-----------IDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee-----------echHH
Confidence 568999999999888775421 2446788889999999999999999876432222221 33333
Q ss_pred HH-HHHHHHhcCCCccccCCCchHHHHhhhcCCeE-EEEecCCCC--hhhHHHHhcCCCCC
Q 047103 247 LQ-KQILSTILSEKLEVAGPNIPQFTKGRFRCMKV-LIVLDNVSK--VGQLEGLIGGLDQF 303 (1095)
Q Consensus 247 l~-~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~--~~~l~~l~~~~~~~ 303 (1095)
.+ +.-.+.|.+....+-+-+--..+-+..+++.| +|.||.|.. ++.++-|+..++.+
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 33 33344455544444221112227777788887 777999975 45577777666543
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.35 E-value=0.0079 Score=66.11 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~ 232 (1095)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678899999999999999999987665 34556665
No 212
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.34 E-value=0.0083 Score=59.07 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|-|+|.+|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999987
No 213
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.34 E-value=0.0026 Score=67.86 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=29.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.++|+|..|.|||||++.+......+|..+..+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999999999996665554
No 214
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.34 E-value=0.08 Score=67.01 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=42.3
Q ss_pred CCcccchhHHHHHHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
.+.+|.+...++|.++|.... .....++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 468999999999998886421 12456799999999999999999998765444
No 215
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.33 E-value=0.029 Score=56.56 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=67.8
Q ss_pred HHhhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeeccccccccccccchHHHHHHHhhcCChhHH
Q 047103 44 LLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMV 123 (1095)
Q Consensus 44 l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~~~~~ 123 (1095)
+.+|++++.+.+.|.......+.. -.++.+.+... ..+..++-|+=++|-. ..+.+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~----------------------~~~~~ 57 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLV----------------------PTWVT 57 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcC----------------------CHHHH
Confidence 578999999999998865542222 23455555432 2335677787777621 11224
Q ss_pred HHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEE
Q 047103 124 QKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIW 203 (1095)
Q Consensus 124 ~~w~~aL~~va~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~ 203 (1095)
+.|...+.+.....-+ +.....-.|.+.-++.+.+.+..........|+++
T Consensus 58 ~~~~~~~~~~~~~~~~-----------------------------~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~ 108 (157)
T cd01858 58 ARWVKILSKEYPTIAF-----------------------------HASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFI 108 (157)
T ss_pred HHHHHHHhcCCcEEEE-----------------------------EeeccccccHHHHHHHHHHHHhhhccccceEEEEE
Confidence 4555554432110000 00011123444445555554432111234568899
Q ss_pred ecCCCcHHHHHHHHHH
Q 047103 204 GMGGIGKITLATAIFN 219 (1095)
Q Consensus 204 GmgGiGKTTLA~~v~~ 219 (1095)
|++|+|||||...+..
T Consensus 109 G~~nvGKStliN~l~~ 124 (157)
T cd01858 109 GYPNVGKSSIINTLRS 124 (157)
T ss_pred eCCCCChHHHHHHHhc
Confidence 9999999999999876
No 216
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.33 E-value=0.033 Score=58.54 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCCcccchhHHHH---HHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHH
Q 047103 172 YNGLVGLNSRIEQ---IKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 172 ~~~~vGr~~~~~~---l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
.+++||-++...+ |++.|.... +-..+-|..+|++|.|||.+|+++++...--| +. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk---------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK---------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec----------
Confidence 4678998877665 455554422 24578899999999999999999999744222 21 10
Q ss_pred HHHHHHHHH-hcCCCccccCCCchHHHHhhh-cCCeEEEEecCCCCh--------------hhHHHHhcCCCCC--CCCC
Q 047103 246 HLQKQILST-ILSEKLEVAGPNIPQFTKGRF-RCMKVLIVLDNVSKV--------------GQLEGLIGGLDQF--GLGS 307 (1095)
Q Consensus 246 ~l~~~ll~~-l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~gs 307 (1095)
..+|+.+ .+. +...+..+-++- +.-.+.+.+|.++.. +..++|+..++.. +.|-
T Consensus 184 --at~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 184 --ATELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --hHHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 0111111 211 111111122222 234788889987542 2356677666543 3455
Q ss_pred EEEEEeCchHHHHh---cCcceEEEccCCChhHHHHHHHHhh
Q 047103 308 RIIITTRDKRVLEK---FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 308 rIIiTTR~~~v~~~---~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.-|-.|-...++.. -...+.++....+++|-.+++..++
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 55555665555432 1234567778889999999998887
No 217
>PRK06696 uridine kinase; Validated
Probab=96.31 E-value=0.007 Score=64.97 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=36.0
Q ss_pred chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 178 LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
|.+.+++|.+.+.........+|+|.|.+|.||||||+.+...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45566666666654333678999999999999999999999987543
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.28 E-value=0.0042 Score=69.91 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=42.1
Q ss_pred CcccchhHHHHHHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 174 GLVGLNSRIEQIKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+++|+++.++++.+.+.... +...++++++|++|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999886633 23568999999999999999999998764
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.27 E-value=0.062 Score=62.85 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999999988764
No 220
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.27 E-value=0.01 Score=67.12 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-CceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-EGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE 261 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~ 261 (1095)
.++.+.+..-. .+ ..++|+|.+|.|||||++.+++.+..+. +..+++.-+.+ ++..+..+.+.++..+.....+
T Consensus 121 ~RvID~l~PiG-kG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 121 MRVVDLVAPIG-KG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred HhhhhheeecC-CC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCC
Confidence 34555554322 22 4558999999999999999999886654 34333333433 2356778888887765433211
Q ss_pred ccC---CC---chHHHHhhh--cCCeEEEEecCCCChhh
Q 047103 262 VAG---PN---IPQFTKGRF--RCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 262 ~~~---~~---~~~~l~~~L--~~kr~LlVLDdv~~~~~ 292 (1095)
... .. ....+.+++ .+++++||+|++.....
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHH
Confidence 100 01 111112222 47899999999965443
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.01 Score=64.80 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=28.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...-+.++|.+|+|||.||.++.+++..+=-.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4556889999999999999999999883323444543
No 222
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.00062 Score=71.43 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=19.0
Q ss_pred CCCCCCcEEeccCCCCCCccccc----cCCCCCCCEEEccCcc
Q 047103 678 DCLPDLETLEMSNCYSLKSLSTN----ICKLKSLRSLHLAFCE 716 (1095)
Q Consensus 678 ~~l~~L~~L~Ls~~~~l~~lp~~----l~~L~~L~~L~Ls~~~ 716 (1095)
-.+|+|+..+||+|.+....|.. +.+-+.|.+|.+++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455555555555444433332 3344555555555553
No 223
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.016 Score=68.69 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=50.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
..-|-|.|..|+|||+||+++++.+... ..+++.-+.-..-....+..+|+.+-.. +-+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh
Confidence 4568899999999999999999987633 3334332221111113466777665433 445566
Q ss_pred CCeEEEEecCCCC
Q 047103 277 CMKVLIVLDNVSK 289 (1095)
Q Consensus 277 ~kr~LlVLDdv~~ 289 (1095)
...-+|||||++-
T Consensus 493 ~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 493 YAPSIIVLDDLDC 505 (952)
T ss_pred hCCcEEEEcchhh
Confidence 6788999999953
No 224
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.03 Score=63.80 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=86.0
Q ss_pred Cccc-chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC--CCceEEEEecccccCCCCCHHHHHHH
Q 047103 174 GLVG-LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG--FEGTCFVADVRRNSGTGGGLEHLQKQ 250 (1095)
Q Consensus 174 ~~vG-r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~--F~~~~~v~~v~~~~~~~~~l~~l~~~ 250 (1095)
.++| -+..++.+...+..+ .-....-++|+.|+||||+|+.+.+.+-.. .... +.+.....+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~------------~cg~C~~c~~ 71 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE------------PCGTCTNCKR 71 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC------------CCCcCHHHHH
Confidence 4566 555667777776543 335677899999999999999998875321 1000 0111111111
Q ss_pred HHHHhcCCCccc---cCC----CchHHHHhh-----hcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 251 ILSTILSEKLEV---AGP----NIPQFTKGR-----FRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 251 ll~~l~~~~~~~---~~~----~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+...-. .+... ++. +..+.+.+. ..+.+=++|+|+++... ..+.|+..+....+++.+|++|.+.
T Consensus 72 ~~~~~h-pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 72 IDSGNH-PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred HhcCCC-CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 110000 00000 000 000111111 12334568889987543 4666666666556777888777654
Q ss_pred H-HHHhc-CcceEEEccCCChhHHHHHHHHh
Q 047103 317 R-VLEKF-GVKKIYRVNGLQFDVALEQFCNY 345 (1095)
Q Consensus 317 ~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~ 345 (1095)
. +.... .-...+++.+++.++..+.+...
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3 33332 23468999999999998888643
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.23 E-value=0.0091 Score=67.47 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=28.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..+.++|..|+|||+||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999998765544566664
No 226
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.11 Score=58.58 Aligned_cols=172 Identities=11% Similarity=0.076 Sum_probs=94.2
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV 262 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 262 (1095)
+.+...+..+ .-...+.+.|+.|+||+|+|++++..+--.-... ..+.+.-.-.+.+...-..+-...
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~----------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 12 QQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG----------DQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 4455554432 2246777999999999999999998653211000 000111122222211100000000
Q ss_pred ---c----CCCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-Ccce
Q 047103 263 ---A----GPNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-GVKK 326 (1095)
Q Consensus 263 ---~----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~ 326 (1095)
+ +.+..+.+.+.+ .+++=.+|+|+++... ..+.|+..+....++..+|++|.+. .++... .-..
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 011111222222 2345577799998654 4666666665556677777777765 444443 2346
Q ss_pred EEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 327 IYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 327 ~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
.+.+.+++.+++.+.+...+. . + ...+..++..++|.|+.
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~---~--~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS---A--E--ISEILTALRINYGRPLL 199 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc---c--C--hHHHHHHHHHcCCCHHH
Confidence 899999999999988876541 1 1 11245677889999963
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=96.19 E-value=0.082 Score=59.87 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999888876543
No 228
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.0083 Score=60.86 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=34.0
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCC
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGC 624 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 624 (1095)
+...+||++| .+..++.|..++.|.+|.|.+|.++..-|.--.-+++|..|.|.+|
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4556777776 3455566677777777777766655544443334555666666654
No 229
>PRK10867 signal recognition particle protein; Provisional
Probab=96.17 E-value=0.075 Score=62.22 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877655
No 230
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.16 E-value=0.022 Score=59.46 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=59.1
Q ss_pred chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH--hcCCCceEEEEecccccCC-CCCHHHHHH-----
Q 047103 178 LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF--SGGFEGTCFVADVRRNSGT-GGGLEHLQK----- 249 (1095)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~--~~~F~~~~~v~~v~~~~~~-~~~l~~l~~----- 249 (1095)
+..+-....+.|.. ..++.+.|++|.|||.||.+.+-+. ..+|+..+++...-+.... ++-.-.+.+
T Consensus 5 ~~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 33444455555542 4588999999999999998888643 4678888777533221111 000001111
Q ss_pred --HHHHHhcCCCccccCCCchHHHH----------hhhcCC---eEEEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEE
Q 047103 250 --QILSTILSEKLEVAGPNIPQFTK----------GRFRCM---KVLIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIIT 312 (1095)
Q Consensus 250 --~ll~~l~~~~~~~~~~~~~~~l~----------~~L~~k---r~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiT 312 (1095)
-+...+..- -+....+.+. ..++++ .-+||+|++.+ .+++..++.. .|.|||||++
T Consensus 80 ~~p~~d~l~~~----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 80 LRPIYDALEEL----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp THHHHHHHTTT----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHH----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 111111110 0111111111 122332 57999999965 4578887655 4789999998
Q ss_pred eCchH
Q 047103 313 TRDKR 317 (1095)
Q Consensus 313 TR~~~ 317 (1095)
--..+
T Consensus 153 GD~~Q 157 (205)
T PF02562_consen 153 GDPSQ 157 (205)
T ss_dssp E----
T ss_pred cCcee
Confidence 75443
No 231
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0059 Score=59.71 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=29.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEE-Eecc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFV-ADVR 235 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v-~~v~ 235 (1095)
--|+|.||+|+||||+++.+.+.++.. |...-|+ .-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 458999999999999999999988766 7654444 3344
No 232
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.12 Score=58.99 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=28.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...++|+++|.+|+||||++..++..+..+=..+.++.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34689999999999999999999987654422344443
No 233
>PHA00729 NTP-binding motif containing protein
Probab=96.10 E-value=0.03 Score=59.22 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+...|.|.|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999764
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.08 E-value=0.021 Score=73.15 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCcccchhHHHHHHHhhhcc------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCME------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
..++|-+..++.|...+... .+.....+.++|+.|+|||+||+.++..+-..-...+-+ +..+.... ..+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHHH
Confidence 57899999999988877532 112345677999999999999999998764332222222 22221111 11111
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCe-EEEEecCCCCh--hhHHHHhcCCC
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMK-VLIVLDNVSKV--GQLEGLIGGLD 301 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~l~~l~~~~~ 301 (1095)
+.+......+......+.+.++.++ -+++||+++.. ..++.|+..+.
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1111111111111122555666555 48889999754 34555555544
No 235
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.07 E-value=0.021 Score=71.01 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCC
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~ 243 (1095)
.++.|.+...+++.+++.... ..-.+-|.|+|++|.||||+|+.++.+....| +.+. .
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~--------- 218 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-G--------- 218 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-h---------
Confidence 456677766666655543211 01123488999999999999999998765443 1111 0
Q ss_pred HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCCCC--C
Q 047103 244 LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQFG--L 305 (1095)
Q Consensus 244 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~ 305 (1095)
..+..... +. ....+...+.........+|++|+++... .+..++..++.+. .
T Consensus 219 -~~~~~~~~---g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 219 -SDFVEMFV---GV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred -HHhHHhhh---cc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 01110000 00 00001111222223356789999986531 1344444444332 2
Q ss_pred CCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 306 GSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 306 gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
+--+|.||...+.+.. -..+..+.++..+.++-.+++..+.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 3344557766654332 1245788899999998888887776
No 236
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.06 E-value=0.00028 Score=66.71 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=16.4
Q ss_pred CCCeeeCCCCCCcccCcccCCCCCCCEEeccCCC
Q 047103 782 SLVELDLSRNNFESLPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 782 ~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~ 815 (1095)
.++.|+|++|.++.+|..+..++.|+.|+++.|+
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCc
Confidence 4444444444444444444444444444444444
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.19 Score=56.59 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=60.5
Q ss_pred CeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCC
Q 047103 278 MKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCP 353 (1095)
Q Consensus 278 kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~ 353 (1095)
++-++|+|+++... .-+.|+..+....+++.+|++|.+. .++..+ .-...+.+..++.+++.+.+.... . +
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~ 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C
Confidence 45688899998654 3555555554445677777777654 444333 234678999999999998886531 1 1
Q ss_pred cchHHHHHHHHHHhCCCCcceeee
Q 047103 354 KDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 354 ~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
...+..++..++|.|+....+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 223567889999999865433
No 238
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.054 Score=66.26 Aligned_cols=176 Identities=16% Similarity=0.201 Sum_probs=105.5
Q ss_pred CCCCCcccchhHHHHHHHhhhccCC---------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELS---------DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
....++.|.++..++|++...--.+ .-++=+-++|++|.|||-||++++-.- .+-|+.....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGS---- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGS---- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechH----
Confidence 4567899999888887776533211 235667899999999999999999862 3334442211
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh----cCCeEEEEecCCCCh-----------------hhHHHHhcC
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF----RCMKVLIVLDNVSKV-----------------GQLEGLIGG 299 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~-----------------~~l~~l~~~ 299 (1095)
++.+.+... +... +++.. ......|.+|+++.. ..+++|+..
T Consensus 379 ---------EFvE~~~g~-----~asr---vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e 441 (774)
T KOG0731|consen 379 ---------EFVEMFVGV-----GASR---VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE 441 (774)
T ss_pred ---------HHHHHhccc-----chHH---HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH
Confidence 111111100 0011 22222 233556666766421 127788888
Q ss_pred CCCCCCCCEEEE--EeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCc
Q 047103 300 LDQFGLGSRIII--TTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPL 372 (1095)
Q Consensus 300 ~~~~~~gsrIIi--TTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 372 (1095)
.+.+..++.||+ +|...+++.. -..+..+.++..+.....++|..|+-..... .+..++++ ++...-|++=
T Consensus 442 mDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 442 MDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred hcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcH
Confidence 777765554443 4555555432 2346788899999999999999988543332 34556666 7777777664
Q ss_pred c
Q 047103 373 A 373 (1095)
Q Consensus 373 a 373 (1095)
|
T Consensus 520 a 520 (774)
T KOG0731|consen 520 A 520 (774)
T ss_pred H
Confidence 4
No 239
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.12 Score=58.83 Aligned_cols=172 Identities=12% Similarity=0.068 Sum_probs=94.4
Q ss_pred HHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc
Q 047103 182 IEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE 261 (1095)
Q Consensus 182 ~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~ 261 (1095)
.+++...+..+ .-..-+.+.|+.|+||+|+|.+++..+--.=.. ...+.+.-.-.+.+...-. .+..
T Consensus 11 ~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~----------~~~~Cg~C~sC~~~~~g~H-PD~~ 77 (334)
T PRK07993 11 YEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQ----------GHKSCGHCRGCQLMQAGTH-PDYY 77 (334)
T ss_pred HHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHHHcCCC-CCEE
Confidence 34555555432 235678899999999999999999875211000 0000111111111111100 0000
Q ss_pred -c--c------CCCchHHHHhhh-----cCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-C
Q 047103 262 -V--A------GPNIPQFTKGRF-----RCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-G 323 (1095)
Q Consensus 262 -~--~------~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~ 323 (1095)
. + ..+..+.+.+.+ .+++=.+|+|+++... ..+.|+..+....+++.+|++|.+. .++... .
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0 0 000111222222 2345578899987653 4666666665556777777777765 455443 2
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 324 VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 324 ~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
-...+.+.+++.+++.+.+.... + . + .+.+..++..++|.|..
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~--~-~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T--M-S---QDALLAALRLSAGAPGA 200 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C--C-C---HHHHHHHHHHcCCCHHH
Confidence 23578999999999998886532 1 1 1 23356788999999964
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.96 E-value=0.048 Score=54.53 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=61.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHh-----cCC------Cccc---c
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI-----LSE------KLEV---A 263 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l-----~~~------~~~~---~ 263 (1095)
.+|-|++-.|.||||+|..++-+...+=-.+.++.-+.... . .+-....+.+ ..+ +.. .... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788899999999999999988655533455544332211 1 2333333332 000 000 0000 0
Q ss_pred CCCchHHHHhhhcCCeE-EEEecCCCCh-----hhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 264 GPNIPQFTKGRFRCMKV-LIVLDNVSKV-----GQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 264 ~~~~~~~l~~~L~~kr~-LlVLDdv~~~-----~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
..+..+..++.+....+ |+|||++... ...+.+...+....++.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 00112233444544444 9999999543 123333333333446678999999864
No 241
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.92 E-value=0.012 Score=59.87 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=60.4
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGL 738 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L 738 (1095)
+...++|++|.+..++. +..++.|.+|.|.+|.+...-|.--.-+++|+.|.|.+|++... .++ ..+..++.|
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-----~dl-~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-----GDL-DPLASCPKL 115 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-----hhc-chhccCCcc
Confidence 34578888888887654 67788899999988887766665555578899999988776431 111 125567888
Q ss_pred CEEEecCCCCCC
Q 047103 739 RELQLMGCTKLG 750 (1095)
Q Consensus 739 ~~L~L~~~~~~~ 750 (1095)
++|.+-+|+...
T Consensus 116 ~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 116 EYLTLLGNPVEH 127 (233)
T ss_pred ceeeecCCchhc
Confidence 888888877543
No 242
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.92 E-value=0.24 Score=52.58 Aligned_cols=197 Identities=15% Similarity=0.077 Sum_probs=105.0
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHH
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILS 253 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~ 253 (1095)
..++...+.+.|..+-.... ++.+++.++|.-|.|||++.+++....-+.=-..+.+. ........+...+..
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~ 101 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVA 101 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHH
Confidence 34455555555544333333 56679999999999999999965554332111122222 111455567777777
Q ss_pred HhcCCCccc---cCCCchHHHHhhh-cCCe-EEEEecCCCCh--hhHHHHh--cCCCC--CCCCCEEEEEeCch------
Q 047103 254 TILSEKLEV---AGPNIPQFTKGRF-RCMK-VLIVLDNVSKV--GQLEGLI--GGLDQ--FGLGSRIIITTRDK------ 316 (1095)
Q Consensus 254 ~l~~~~~~~---~~~~~~~~l~~~L-~~kr-~LlVLDdv~~~--~~l~~l~--~~~~~--~~~gsrIIiTTR~~------ 316 (1095)
.+....... ....+.+.+.... +++| +.++.||..+. ++++.+. ..+.. .++ -+|+..-.-+
T Consensus 102 ~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-l~ivL~Gqp~L~~~lr 180 (269)
T COG3267 102 DLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-LSIVLIGQPKLRPRLR 180 (269)
T ss_pred HhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc-eeeeecCCcccchhhc
Confidence 765522111 1111112222222 4567 99999998653 2343332 22211 122 1233322111
Q ss_pred -HHHHhcC-cceE-EEccCCChhHHHHHHHHhhhccCCCCcch-HHHHHHHHHHhCCCCcceeeec
Q 047103 317 -RVLEKFG-VKKI-YRVNGLQFDVALEQFCNYAFKENRCPKDL-IGHSWRVVRYAKGNPLALKVMG 378 (1095)
Q Consensus 317 -~v~~~~~-~~~~-~~v~~L~~~ea~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~GlPLal~~lg 378 (1095)
.+....+ -..+ |++.+++.++...++.++.-+...+.+-+ .+....|.....|.|.++-.++
T Consensus 181 ~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 181 LPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 1122221 1234 99999999999999888765443333333 3455567778889998876554
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.91 E-value=0.022 Score=71.35 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCcccchhHHHHHHHhhhcc------CCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 173 NGLVGLNSRIEQIKPLLCME------LSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..++|-+..++.|...+... .+.....+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999988887632 112356788999999999999999998774
No 244
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.045 Score=65.64 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCcccchhHHHHHHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 172 YNGLVGLNSRIEQIKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
..+-+|.+...++|.+.|.-.. .-+-.++.++|++|+|||.||+.++.-+...|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 4578999999999999885532 13457999999999999999999999887776
No 245
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.89 E-value=0.03 Score=62.85 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..+-+.|+|..|+|||.||.++++.+..+=..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3467889999999999999999999865434455654
No 246
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.85 E-value=0.04 Score=60.75 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...++|.++|++|+||||++..++..+...-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45789999999999999999999987765433444443
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.84 E-value=0.031 Score=58.47 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=27.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
+++|.++|+.|+||||.+.+++.+...+=..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999999888887765533455554
No 248
>PRK07667 uridine kinase; Provisional
Probab=95.79 E-value=0.018 Score=60.16 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 182 IEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 182 ~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
++.|.+.+..-. ....+|||-|.+|.||||+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555555444 45689999999999999999999997754
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.72 E-value=0.085 Score=53.44 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=71.8
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc--------------------CCCceEEEEeccc
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG--------------------GFEGTCFVADVRR 236 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~--------------------~F~~~~~v~~v~~ 236 (1095)
|-+..++.+...+..+ .-...+.++|..|+||+|+|.++++.+-. ......|+.....
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 3455566666666543 22446789999999999999999986421 1223333321100
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeC
Q 047103 237 NSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTR 314 (1095)
Q Consensus 237 ~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 314 (1095)
. ....++++. ++...+.... ..+++=++|+||++.. +..+.|+..+.....++++|++|+
T Consensus 79 -~-~~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 79 -K-KSIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp -S-SSBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred -c-chhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 0 002233322 3332221110 1223557889999764 446666666655567889999888
Q ss_pred chH-HHHhc-CcceEEEccCC
Q 047103 315 DKR-VLEKF-GVKKIYRVNGL 333 (1095)
Q Consensus 315 ~~~-v~~~~-~~~~~~~v~~L 333 (1095)
+.+ ++... .-...+.++++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE---
T ss_pred ChHHChHHHHhhceEEecCCC
Confidence 775 33332 22346666655
No 250
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.72 E-value=0.053 Score=63.05 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
...+|.++|..|+||||+|..++..++.+-..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999988765442234444
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.70 E-value=0.059 Score=54.15 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
++.|+|.+|.||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766545666665
No 252
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.084 Score=60.09 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=79.0
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC---------------------CceEEEE
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF---------------------EGTCFVA 232 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F---------------------~~~~~v~ 232 (1095)
.++|-+....++..+..... .-...+-++|+.|+||||+|.++++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 46677777777777776432 2334588999999999999999999865322 1122221
Q ss_pred ecccccCCCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhh--HHHHhcCCCCCCCCCEE
Q 047103 233 DVRRNSGTGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ--LEGLIGGLDQFGLGSRI 309 (1095)
Q Consensus 233 ~v~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrI 309 (1095)
.. .....+ .....+++........ ..++.-++++|+++.... -..+...+.......++
T Consensus 81 ~s---~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 PS---DLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred cc---ccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 00 000010 1222333332211100 024567899999987543 45555555445667788
Q ss_pred EEEeCch-HHHHhc-CcceEEEccCCCh
Q 047103 310 IITTRDK-RVLEKF-GVKKIYRVNGLQF 335 (1095)
Q Consensus 310 IiTTR~~-~v~~~~-~~~~~~~v~~L~~ 335 (1095)
|++|.+. .+.... .....+++.+.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchH
Confidence 8888743 333322 2234566665333
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.08 Score=59.96 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=48.1
Q ss_pred CeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCC
Q 047103 278 MKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCP 353 (1095)
Q Consensus 278 kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~ 353 (1095)
.|++ |+|++...+ .-+.+...+.....+..+|++|.+.+ +.... .....+.+.+++.+++.+.+..... .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~ 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV-----A 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC-----C
Confidence 3555 458776543 33333333332234566777777654 44332 2246789999999999988865421 1
Q ss_pred cchHHHHHHHHHHhCCCCcc
Q 047103 354 KDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 354 ~~~~~l~~~i~~~~~GlPLa 373 (1095)
.. . ..+..++|-|+.
T Consensus 188 ~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLF 202 (325)
T ss_pred cH-H----HHHHHhCCChhh
Confidence 11 1 123567898864
No 254
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.18 Score=57.34 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred CeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc-hHHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCC
Q 047103 278 MKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD-KRVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCP 353 (1095)
Q Consensus 278 kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~ 353 (1095)
++=++|+|+++.. ...+.|+..+....++..+|++|.+ ..++... .-...+.+.+++.++..+.+.... . +
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 3447778999764 4577777777666677777766665 4454443 234688999999999999887642 1 1
Q ss_pred cchHHHHHHHHHHhCCCCccee
Q 047103 354 KDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 354 ~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
+ ...++..++|.|+...
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred h-----HHHHHHHcCCCHHHHH
Confidence 1 1235677899996433
No 255
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.58 E-value=0.015 Score=59.76 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=32.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+|.+.|+.|.||||+|+.++.++..++...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999988887777773
No 256
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.051 Score=59.02 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=28.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh----cCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS----GGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~----~~F~~~~~v~ 232 (1095)
-|+|.++|++|.|||+|.++++.+++ ++|....-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 48999999999999999999999753 4455444443
No 257
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.52 E-value=0.023 Score=58.62 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=41.1
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
|....++||-++.++.+.-.-.. .++.-+.|.||+|+||||-+..+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34456899999999988766554 4477788999999999999999998754
No 258
>PRK04296 thymidine kinase; Provisional
Probab=95.50 E-value=0.02 Score=59.77 Aligned_cols=110 Identities=17% Similarity=0.077 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc--c-cCCCchHHHHhh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE--V-AGPNIPQFTKGR 274 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~--~-~~~~~~~~l~~~ 274 (1095)
.++.|+|..|.||||+|..++.+...+-..++++. - ....+ .+. ..+++.++..... . ...+..+.+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~-~~~----~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDR-YGE----GKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccc-ccC----CcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 46789999999999999999988765544444442 1 00001 111 1223333311111 1 11112222222
Q ss_pred hcCCeEEEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 275 FRCMKVLIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
..++.-+||+|.+.- .+++..+...+. ..|-.||+|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 222445899999954 344444443322 46778999999854
No 259
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0096 Score=63.02 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=51.3
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCC--CCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNC--YSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLE 736 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~--~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~ 736 (1095)
+++.|.+.+..++.+. .+-.|++|+.|.++.| ...+.++.....+++|++|++++|++.. +..++ .+..+.
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-----lstl~-pl~~l~ 116 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-----LSTLR-PLKELE 116 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-----ccccc-hhhhhc
Confidence 3344444443333221 1335778888888888 5555566556667888888888876543 11221 245667
Q ss_pred CCCEEEecCCCCCC
Q 047103 737 GLRELQLMGCTKLG 750 (1095)
Q Consensus 737 ~L~~L~L~~~~~~~ 750 (1095)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 78888888877544
No 260
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.51 Score=54.61 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 261
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.46 E-value=0.26 Score=55.41 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=60.4
Q ss_pred eEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCch-HHHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCc
Q 047103 279 KVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDK-RVLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPK 354 (1095)
Q Consensus 279 r~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~ 354 (1095)
+=.+|+|+++... ..+.|+..+....+++.+|++|.+. .++... .-...+.+..++.+++.+.+.... . +
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~--~ 182 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I--T 182 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C--c
Confidence 4477889887643 4667776666556777777776655 455443 234688999999999999886542 1 1
Q ss_pred chHHHHHHHHHHhCCCCcceeee
Q 047103 355 DLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 355 ~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
.+..++..++|.|+....+
T Consensus 183 ----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999865443
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.44 E-value=0.013 Score=56.55 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 263
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.23 Score=58.48 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=27.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh--cCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS--GGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~--~~F~~~~~v~ 232 (1095)
-+++.++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887765 3334455554
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.38 E-value=0.061 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987644
No 265
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.36 E-value=0.048 Score=58.56 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 185 IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 185 l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
|-++|..+- ..-.++.|+|.+|.||||+|.+++......-..++|+.
T Consensus 12 lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444443332 45679999999999999999999987766667788886
No 266
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.28 E-value=0.074 Score=52.74 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR 276 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 276 (1095)
-.+++|.|..|.|||||++.+..... ...+.+++.......-- +.+.. +....-.+...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~-~~lS~-----------------G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF-EQLSG-----------------GEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE-ccCCH-----------------HHHHHHHHHHHHh
Confidence 46899999999999999999987543 23444544311100000 00000 0000111444455
Q ss_pred CCeEEEEecCCCC---h---hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEc
Q 047103 277 CMKVLIVLDNVSK---V---GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRV 330 (1095)
Q Consensus 277 ~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 330 (1095)
.+.=++++|+-.. . ..+..+...+ +..||++|.+.+.+... .++++.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 5667888997742 2 2233333222 24688888887665443 3455544
No 267
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.27 E-value=0.017 Score=60.57 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+|||.|.+|.||||+|+++...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998764
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.26 E-value=0.071 Score=55.10 Aligned_cols=128 Identities=19% Similarity=0.290 Sum_probs=66.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH------HHHHHHhcCCCc------ccc-
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ------KQILSTILSEKL------EVA- 263 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~------~~ll~~l~~~~~------~~~- 263 (1095)
-.+++|.|..|.|||||++.++.... ...+.+++.... .. . ....... -++++.++-... ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~-~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA-S-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC-c-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 45899999999999999999987543 345666553211 10 0 1111111 113333332211 111
Q ss_pred CCCchHHHHhhhcCCeEEEEecCCCC---hh---hHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEc
Q 047103 264 GPNIPQFTKGRFRCMKVLIVLDNVSK---VG---QLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRV 330 (1095)
Q Consensus 264 ~~~~~~~l~~~L~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 330 (1095)
+....-.+.+.+....=+++||+-.. .. .+..+...+.. ..|..||++|.+......+ .+.++.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 11112234555666788999998743 22 23233322211 1266788899887765443 3455544
No 269
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.25 E-value=0.062 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999875
No 270
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.0097 Score=62.97 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCCCCccccEeeccCC--ccCccccccccCCCCcceEeccCCC
Q 047103 585 EPSETPNLDRMNLWNC--TGLALIPSYIQNFNNLGNLSLEGCE 625 (1095)
Q Consensus 585 ~~~~l~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~L~~c~ 625 (1095)
.+-.+|+|++|.++.| .....++.....+++|++|+|++|+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3445556666666655 3333344334444666666666543
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.22 E-value=0.022 Score=67.48 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=43.0
Q ss_pred CCCcccchhHHHHHHHhhhcc---CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 172 YNGLVGLNSRIEQIKPLLCME---LSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..+++|+++.+++|.+.|... -+..-+++.++|++|+||||||+.+++-+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 457999999999999988321 12556899999999999999999999865543
No 272
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.19 E-value=0.031 Score=55.63 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=29.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358899999999999999999999887766666664
No 273
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.18 E-value=0.0016 Score=61.67 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=25.8
Q ss_pred cccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCC
Q 047103 771 IKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 771 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~ 815 (1095)
.++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|.
T Consensus 90 sdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 90 SDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 344555555566666666666666666555555566666655554
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.18 E-value=0.057 Score=56.62 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh-
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF- 275 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L- 275 (1095)
-+++.|.|.+|.||||+++.+...+...=..++++. +. ......+....+.....+ ...+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a---------pT-~~Aa~~L~~~~~~~a~Ti-----~~~l~~~~~ 82 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA---------PT-NKAAKELREKTGIEAQTI-----HSFLYRIPN 82 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE---------SS-HHHHHHHHHHHTS-EEEH-----HHHTTEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC---------Cc-HHHHHHHHHhhCcchhhH-----HHHHhcCCc
Confidence 367889999999999999999887665422333333 11 122223333332211111 00000000
Q ss_pred --------cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchHH
Q 047103 276 --------RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKRV 318 (1095)
Q Consensus 276 --------~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v 318 (1095)
..++-+||+|++.-. .++..+..... ..|+|+|+.=-..++
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 122349999999654 45777665544 257888887655543
No 275
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.15 Score=60.50 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=104.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~ 249 (1095)
...+++||-+.....|...+..+. -..-....|+-|+||||+|+.++.-+-..=. ....+++-....+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----------~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENG----------PTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCC----------CCCCcchhhhhhH
Confidence 345788999999999999887643 2334557899999999999999985421000 0001122222223
Q ss_pred HHHHHhcCCCccc-----cCCCchHHHHhhhc-----CCeEEEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEEeCch-
Q 047103 250 QILSTILSEKLEV-----AGPNIPQFTKGRFR-----CMKVLIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIITTRDK- 316 (1095)
Q Consensus 250 ~ll~~l~~~~~~~-----~~~~~~~~l~~~L~-----~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~- 316 (1095)
.|...-..+-.++ .+.+-.+.|.+... ++.=..|+|.|.- ...++.|+..+....+.-..|..|++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 3322200000111 12222233443332 2334778899964 456888888776545555656555554
Q ss_pred HHHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCC
Q 047103 317 RVLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKG 369 (1095)
Q Consensus 317 ~v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 369 (1095)
.+... ..-...|..+.++.++-...+..-+-.+.- .-..+...-|++...|
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~G 212 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEG 212 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCC
Confidence 33322 233468999999999877777666533222 1223444455666655
No 276
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.09 E-value=0.0031 Score=76.11 Aligned_cols=98 Identities=34% Similarity=0.465 Sum_probs=46.9
Q ss_pred CCCCcEEeccCCCCCC--ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccC
Q 047103 680 LPDLETLEMSNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLG 757 (1095)
Q Consensus 680 l~~L~~L~Ls~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~ 757 (1095)
+++|+.|.+.+|..+. .+-.....+++|++|+|++|...+. . .+.....++++|+.|.+..+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d--~---~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD--S---GLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH--H---HHHHHHHhCcchhhhhhhhcCC---------
Confidence 5667777766665321 1222234566677777777665421 1 1112233455555544433221
Q ss_pred CCccccccccCCCcccC------cccCCCCCCCeeeCCCCC
Q 047103 758 NLKALEFLSAAGIIKIP------RDIGCLSSLVELDLSRNN 792 (1095)
Q Consensus 758 ~L~~L~~L~l~~~~~lp------~~l~~l~~L~~L~Ls~n~ 792 (1095)
+..++.+.+.++.... ..+..++.|+.+.|..+.
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3334444333322222 123556666666666655
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.99 E-value=0.11 Score=59.88 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.++.++|..+- ..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 69 ~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34445554332 34578999999999999999999988766555677775
No 278
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.98 E-value=0.032 Score=59.81 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc-------------CC---CceEEEEecccccCC-CCCH---------------
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG-------------GF---EGTCFVADVRRNSGT-GGGL--------------- 244 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~-------------~F---~~~~~v~~v~~~~~~-~~~l--------------- 244 (1095)
-.+++|+|+-|.|||||.+.+..-+.. +. ..+.||..-...... +-.+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 368999999999999999999872211 11 134444311100000 0000
Q ss_pred -------HHHHHHHHHHhcCCCcc------ccCCCc-hHHHHhhhcCCeEEEEecCC------CChhhHHHHhcCCCCCC
Q 047103 245 -------EHLQKQILSTILSEKLE------VAGPNI-PQFTKGRFRCMKVLIVLDNV------SKVGQLEGLIGGLDQFG 304 (1095)
Q Consensus 245 -------~~l~~~ll~~l~~~~~~------~~~~~~-~~~l~~~L~~kr~LlVLDdv------~~~~~l~~l~~~~~~~~ 304 (1095)
.....+.|+.++..+.. .++.+. .-.+.+.|..+.=|+|||.- .....+-.++..+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 12233444443332221 133333 33567788888999999943 334445666655543
Q ss_pred CCCEEEEEeCchHHHHhc
Q 047103 305 LGSRIIITTRDKRVLEKF 322 (1095)
Q Consensus 305 ~gsrIIiTTR~~~v~~~~ 322 (1095)
.|.-|+++|-|-......
T Consensus 188 eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 188 EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CCCEEEEEeCCcHHhHhh
Confidence 388899999988766553
No 279
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.97 E-value=0.062 Score=55.13 Aligned_cols=125 Identities=21% Similarity=0.134 Sum_probs=61.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC-CCCHHHHHHHHHHHhcCCC--ccccCC------Cc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT-GGGLEHLQKQILSTILSEK--LEVAGP------NI 267 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~-~~~l~~l~~~ll~~l~~~~--~~~~~~------~~ 267 (1095)
-.+++|+|..|.|||||.+.+... ...+.+......... .... --+.+.+..++-.. ...... ..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~-~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIF-IDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEE-EhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 468999999999999999988631 111211100000000 0000 01134555543221 111111 11
Q ss_pred hHHHHhhhcCC--eEEEEecCCCC---hhh---HHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 268 PQFTKGRFRCM--KVLIVLDNVSK---VGQ---LEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 268 ~~~l~~~L~~k--r~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
.-.+...+..+ .=+++||+... ... +..++..+. ..|..||++|.+.+.... .+.++.+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~~--~d~i~~l~ 162 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLSS--ADWIIDFG 162 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence 11234445556 66888897743 222 222222221 246678999998877642 55666653
No 280
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.95 E-value=0.067 Score=57.50 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=79.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEe--cccccCCCCCHHHHHHHHHHHhcCCC-------ccccCCC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVAD--VRRNSGTGGGLEHLQKQILSTILSEK-------LEVAGPN 266 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~--v~~~~~~~~~l~~l~~~ll~~l~~~~-------~~~~~~~ 266 (1095)
+-.++||+|.+|.||||+|+.+..-.... .+.+++.. +.... . ........+++..++... .+..+.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~-~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-K-EERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-h-hHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999998754322 34444431 11100 0 123333445555544221 1223333
Q ss_pred chH-HHHhhhcCCeEEEEecCCCC------hhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCc--ceEEEccCCChhH
Q 047103 267 IPQ-FTKGRFRCMKVLIVLDNVSK------VGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGV--KKIYRVNGLQFDV 337 (1095)
Q Consensus 267 ~~~-~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~--~~~~~v~~L~~~e 337 (1095)
.++ .+.+.|.-+.-|+|.|.--+ ..|.-.|+..+.. ..|-..+..|-|-.+...+.- ...|.=+-.....
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecC
Confidence 332 56777888899999996643 2344444433332 345567888888888776521 1122222233345
Q ss_pred HHHHHH
Q 047103 338 ALEQFC 343 (1095)
Q Consensus 338 a~~Lf~ 343 (1095)
+-++|.
T Consensus 194 ~~~~~~ 199 (268)
T COG4608 194 TEEVFS 199 (268)
T ss_pred HHHHhh
Confidence 556664
No 281
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.091 Score=60.63 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=81.6
Q ss_pred CCCCcccchhHHHHHH---HhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC-
Q 047103 171 SYNGLVGLNSRIEQIK---PLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT- 240 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~---~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~- 240 (1095)
..+++-|.|+..++++ +.|.... +.=.+=|.++|++|.|||-||++++-+.. +-|..........
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSEFDEM 376 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccchhhh
Confidence 3567888887665555 4554322 12245678999999999999999997632 1122211111000
Q ss_pred --CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCCCCCC
Q 047103 241 --GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLDQFGL 305 (1095)
Q Consensus 241 --~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~ 305 (1095)
+.+..++ +++ ....-+.-.+.|.+|.++... .++.|+..++.|.+
T Consensus 377 ~VGvGArRV-RdL-------------------F~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 377 FVGVGARRV-RDL-------------------FAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred hhcccHHHH-HHH-------------------HHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 0111111 111 111112347899999885421 27778888887766
Q ss_pred CCEEEE--EeCchHHHHh----c-CcceEEEccCCChhHHHHHHHHhh
Q 047103 306 GSRIII--TTRDKRVLEK----F-GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 306 gsrIIi--TTR~~~v~~~----~-~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..-||| .|-..+.+.. - ..+..+.|+..+-.--.++|..|.
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 555554 3443333322 1 234556666666655566665554
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.90 E-value=0.21 Score=57.18 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCC--CceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGF--EGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F--~~~~~v~ 232 (1095)
.-.+++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998765443 3445553
No 283
>PRK04132 replication factor C small subunit; Provisional
Probab=94.89 E-value=0.34 Score=61.14 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=87.0
Q ss_pred cCCCcHHHHHHHHHHHHh-cCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEE
Q 047103 205 MGGIGKITLATAIFNQFS-GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIV 283 (1095)
Q Consensus 205 mgGiGKTTLA~~v~~~~~-~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlV 283 (1095)
+.++||||+|.++++++- +.+...+.--|. +.. .++..+++.+-........ -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~-rgid~IR~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA---SDE-RGINVIREKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCc-ccHHHHHHHHHHHHhcCCc--------------CCCCCEEEE
Confidence 778999999999999863 233322222222 111 3444444333221111000 012356899
Q ss_pred ecCCCChh--hHHHHhcCCCCCCCCCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHH
Q 047103 284 LDNVSKVG--QLEGLIGGLDQFGLGSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGH 359 (1095)
Q Consensus 284 LDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l 359 (1095)
+|+++... +.+.|+..+.......++|++|.+.. +.... .-...+++.+++.++-.+.+.+-+-...-. --.+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHHH
Confidence 99998754 56666665554455677777666553 33222 234689999999999888877665332211 11356
Q ss_pred HHHHHHHhCCCCcc
Q 047103 360 SWRVVRYAKGNPLA 373 (1095)
Q Consensus 360 ~~~i~~~~~GlPLa 373 (1095)
...|++.++|-+..
T Consensus 714 L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 714 LQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHcCCCHHH
Confidence 67889999997743
No 284
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.88 E-value=0.025 Score=60.03 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999976
No 285
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.03 Score=58.45 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=27.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+.+.+|||-|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988755
No 286
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.86 E-value=0.12 Score=62.63 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....++|....++++.+.+..-. ..-..|.|+|..|+|||++|+.++..-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45679999999999988887655 3345677999999999999999998643
No 287
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.85 E-value=0.2 Score=49.46 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeec
Q 047103 42 PALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVS 94 (1095)
Q Consensus 42 ~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ 94 (1095)
.++.++|+.+.+.|.|++.....+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367899999999999999877666552 25666555332 3445677766665
No 288
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.85 E-value=0.092 Score=57.73 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=62.3
Q ss_pred cch-hHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHh
Q 047103 177 GLN-SRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI 255 (1095)
Q Consensus 177 Gr~-~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l 255 (1095)
|.. ..++.+..++.. .-.+|.|.|..|.||||+++++.+.+...-..++.+.+..+..- .+. .++
T Consensus 63 g~~~~~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~ 128 (264)
T cd01129 63 GLKPENLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQV 128 (264)
T ss_pred CCCHHHHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEE
Confidence 443 334445555432 24689999999999999999988876542223444443322111 111 010
Q ss_pred cCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhc
Q 047103 256 LSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIG 298 (1095)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~ 298 (1095)
.. ....+....+.++..|+...=.|+++++.+.+....+..
T Consensus 129 ~v--~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 129 QV--NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred Ee--CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 00 001123345668888888888999999999887554443
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.85 E-value=0.28 Score=53.97 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=95.1
Q ss_pred CCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC-CCCHHHHH
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT-GGGLEHLQ 248 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~-~~~l~~l~ 248 (1095)
+...++|-.++..++..++.... -.+..-+.|+|+.|.|||+|.-....+ ...|.-...+.-....... .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 45679999999999888885421 133456779999999999988766655 2233322233222221110 01233444
Q ss_pred HHHHHHhcCCCccc-cCCCchHHHHhhhcC------CeEEEEecCCCChh----h--HHHHhcC-CCCCCCCCEEEEEeC
Q 047103 249 KQILSTILSEKLEV-AGPNIPQFTKGRFRC------MKVLIVLDNVSKVG----Q--LEGLIGG-LDQFGLGSRIIITTR 314 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~-~~~~~~~~l~~~L~~------kr~LlVLDdv~~~~----~--l~~l~~~-~~~~~~gsrIIiTTR 314 (1095)
+++..++....... .-.+...++-..|+. -++.+|+|.++-.. | +-.+... -....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44444433221111 222223334444432 37999999886432 2 2233222 122456777889999
Q ss_pred chHH-------HHhcCcceEEEccCCChhHHHHHHHHhh
Q 047103 315 DKRV-------LEKFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 315 ~~~v-------~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
-..+ -..+.-..+|-.+.++-++-.++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6532 1222223466777777777777776554
No 290
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.82 E-value=0.1 Score=53.62 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=59.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEec--ccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADV--RRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v--~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
-.+++|.|..|.|||||++.+..-.. ...+.+++... .-..+. ..+.. +....-.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~-~~LSg-----------------Gq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQY-IDLSG-----------------GELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEccc-CCCCH-----------------HHHHHHHHHHH
Confidence 35899999999999999999887433 22344443211 000111 11100 11111124455
Q ss_pred hcCCeEEEEecCCCC---hhh---HHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 275 FRCMKVLIVLDNVSK---VGQ---LEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
+..+.-+++||+-.. ... +..+...+.. ..|.-||++|.+......+ .+.++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 566677889998743 222 2222222211 1225688888887765543 34555554
No 291
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.81 E-value=0.071 Score=57.66 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=29.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC------CCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG------FEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~------F~~~~~v~ 232 (1095)
..-.++.|+|.+|.||||||..++...... -..++|+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 456799999999999999999987543222 36788886
No 292
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.81 E-value=0.12 Score=55.50 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC------CceEEEE
Q 047103 185 IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF------EGTCFVA 232 (1095)
Q Consensus 185 l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F------~~~~~v~ 232 (1095)
+..+|..+- ..-.++.|+|.+|.||||||..++......- ..++|+.
T Consensus 8 lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 334443322 4567999999999999999999887655444 5677876
No 293
>PRK03839 putative kinase; Provisional
Probab=94.80 E-value=0.023 Score=58.78 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|.|.||+|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 294
>PTZ00301 uridine kinase; Provisional
Probab=94.75 E-value=0.028 Score=59.42 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
..+|||.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875443
No 295
>PRK08233 hypothetical protein; Provisional
Probab=94.74 E-value=0.024 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|.|.+|.||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998754
No 296
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.72 E-value=0.2 Score=56.47 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=25.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...+|+++|++|+||||++..++..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 56899999999999999999999877644
No 297
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.70 E-value=0.068 Score=61.28 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=64.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE-ecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA-DVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~-~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
-..|.|.|..|.||||+++.+...+.......++.. +-.+ .........+.............+.++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---------~~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---------YVHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---------hhccCccceEEccccCCCCcCHHHHHHHhh
Confidence 368999999999999999999988765555555442 1111 100000000111111112234456688888
Q ss_pred cCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHH
Q 047103 276 RCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRV 318 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 318 (1095)
+...=.|++|.+.+.+.+....... ..|-.|+.|+-....
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 8888899999999888766543331 234445555554433
No 298
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.70 E-value=0.26 Score=60.33 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.....++|....++++.+.+..-. ..-..|.|+|..|.|||++|+.++..-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 456789999999999988876544 333456799999999999999999863
No 299
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.68 E-value=0.048 Score=63.91 Aligned_cols=46 Identities=22% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...++|+++.++.+...+..+. -|.|+|++|+|||+||+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag~-----hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC-----CEEEECCCChhHHHHHHHHHHHhc
Confidence 3568999999999988876543 467999999999999999998754
No 300
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.67 E-value=0.13 Score=57.71 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=35.7
Q ss_pred HHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 183 EQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 183 ~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..|-.+|. -+- ..-+++-|+|++|+||||||..++......-..++|++
T Consensus 41 ~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 33444554 222 45678999999999999999998877665556778885
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.085 Score=63.93 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCCcccchhHHHHHHHhhhcc---C-------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCC
Q 047103 172 YNGLVGLNSRIEQIKPLLCME---L-------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTG 241 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~---~-------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~ 241 (1095)
..+..|.+...+.+.+..... . -...+.+-++|++|.|||+||+++++.....|-.+-.-
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~---------- 310 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS---------- 310 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----------
Confidence 345666776666665543221 1 13456888999999999999999999655544322110
Q ss_pred CCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-------------hhHHHHhcCCCCCCCCCE
Q 047103 242 GGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-------------GQLEGLIGGLDQFGLGSR 308 (1095)
Q Consensus 242 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~gsr 308 (1095)
.++++ ........+.+.+....+.....|.+|.++.. .....++..++.....+.
T Consensus 311 --------~l~sk----~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 --------ELLSK----WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred --------HHhcc----ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 11111 00001111111233333456789999988542 123444444433333333
Q ss_pred --EEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhhh
Q 047103 309 --IIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 309 --IIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
||-||-..+.... -..+..+.++..+.++..+.|..+.-
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 3444444433321 13467899999999999999998874
No 302
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.64 E-value=0.02 Score=54.48 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcCCCc
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGGFEG 227 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~F~~ 227 (1095)
|-|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 5799999999999999999988877754
No 303
>PRK04040 adenylate kinase; Provisional
Probab=94.63 E-value=0.035 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|+|++|.||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.60 E-value=0.031 Score=59.20 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=24.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998654
No 305
>PRK06762 hypothetical protein; Provisional
Probab=94.59 E-value=0.03 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+|.|.|++|.||||+|+.+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.59 E-value=0.12 Score=52.38 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=63.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccC-CCchHHHHhhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAG-PNIPQFTKGRF 275 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~~~~l~~~L 275 (1095)
-.+++|.|..|.|||||.+.++.... ...+.+++.... .. . .......+ ..+.- ..+..+ ....-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~-~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-F-ASPRDARR---AGIAM-VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-c-CCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHH
Confidence 35899999999999999999987543 345566654211 00 0 11111100 00100 000111 11112344555
Q ss_pred cCCeEEEEecCCCCh---h---hHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEc
Q 047103 276 RCMKVLIVLDNVSKV---G---QLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRV 330 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~---~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 330 (1095)
..+.=+++||+.... . .+..+...+. ..|.-||++|.+...+... .+.++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 667778889987432 2 2222222221 2466788899887755443 3345544
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.57 E-value=0.03 Score=47.74 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 308
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=94.52 E-value=0.075 Score=51.66 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCcccccccCcchHHHHHHHhhC-------CCe----------EEecCCCCCCCCcccHHHHhhccCceEEEEEecCCcc
Q 047103 1 METTGEDTRVIFISHLYAALCRK-------KIK----------TFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYA 63 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~-------gi~----------~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya 63 (1095)
|||..+|-. .....|...+... .+. .+.+..+....+.|...|.++|.+|.+.||+.|++=+
T Consensus 5 IS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~~T~ 83 (130)
T PF08937_consen 5 ISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGPNTA 83 (130)
T ss_dssp ------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--TT--
T ss_pred ccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCCCcc
Confidence 688888832 2555566566552 221 1223333334568899999999999999999999999
Q ss_pred chhhhHHHHHHHHhccccCCCeEEeE
Q 047103 64 SSKWCLNELVKILDCKKANDQIVIPV 89 (1095)
Q Consensus 64 ~s~wcl~El~~i~~~~~~~~~~v~pv 89 (1095)
.|+|+-.|+...++ .+..|+-|
T Consensus 84 ~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 84 KSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp --HHHHHHHHHHTT----T---EEEE
T ss_pred cCcHHHHHHHHHHH----CCCCEEEE
Confidence 99999999998877 34446665
No 309
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.50 E-value=0.38 Score=50.49 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred cCCCCCcccchhHHHHHHHhhhc-cCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCM-ELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+.+...++|.+...+.+.+-... -.+-...-|.+||--|.||+.|++++.+.+.++.-. -|.+-+ .++..+
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k------~dl~~L 127 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDK------EDLATL 127 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcH------HHHhhH
Confidence 34456899999988887653211 111334567899999999999999999998876644 222111 122111
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhh--cCCeEEEEecCCC---ChhhHHHHhcCCCC---CCCCCEEEEEeCch
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRF--RCMKVLIVLDNVS---KVGQLEGLIGGLDQ---FGLGSRIIITTRDK 316 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~---~~~~l~~l~~~~~~---~~~gsrIIiTTR~~ 316 (1095)
- . +-+.| +.+||.|..||.. +......|...+.. ..|...++..|.++
T Consensus 128 p-~--------------------l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 128 P-D--------------------LVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred H-H--------------------HHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1 1 22222 3569999999994 23335555544432 23445556555554
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.49 E-value=0.024 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
|-|+|.+|+|||++|+.++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999999998876544
No 311
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.31 Score=50.98 Aligned_cols=147 Identities=23% Similarity=0.375 Sum_probs=85.5
Q ss_pred Ccc-cchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCC
Q 047103 174 GLV-GLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGG 242 (1095)
Q Consensus 174 ~~v-Gr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~ 242 (1095)
++| |.+..+++|.+.+.... -...+=+.++|++|.|||-||++||.. ..+.|+. | .
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-v-------s 213 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-V-------S 213 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-e-------c
Confidence 345 45777777777664422 034566789999999999999999974 3444554 3 2
Q ss_pred CHHHHHHHHHHHhcCCCccccCCCchHHHHhhh----cCCeEEEEecCCCChh--------------h--HHHHhcCCCC
Q 047103 243 GLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF----RCMKVLIVLDNVSKVG--------------Q--LEGLIGGLDQ 302 (1095)
Q Consensus 243 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~~ 302 (1095)
+-.-+|+-|-+ +..+ +++.+ .+-.-.|..|.+++.. | .-.|+..++.
T Consensus 214 gselvqk~ige----------gsrm---vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 214 GSELVQKYIGE----------GSRM---VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred hHHHHHHHhhh----------hHHH---HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 22233333221 1111 22211 2346678888775421 1 2234444544
Q ss_pred C--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 303 F--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 303 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
| ...-+||..|..-+++.. -..+..++.++.+++.-.+++.-+.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 4 245577777665555432 2456778888888888888887664
No 312
>PRK00625 shikimate kinase; Provisional
Probab=94.47 E-value=0.03 Score=57.27 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|.|+||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 313
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.44 E-value=0.4 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988764
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.42 E-value=0.088 Score=53.61 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecc---cccCCCCCH--HHHHHHHHHHhcCCCcccc-CCCchHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVR---RNSGTGGGL--EHLQKQILSTILSEKLEVA-GPNIPQF 270 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~---~~~~~~~~l--~~l~~~ll~~l~~~~~~~~-~~~~~~~ 270 (1095)
-.+++|.|..|.|||||++.++..... ..+.+++...+ -..+. ..+ ..+.+.+.-. ...... +....-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~-~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQR-PYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCC-CccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 458999999999999999999875432 22333331100 00111 111 1222222110 111111 1111223
Q ss_pred HHhhhcCCeEEEEecCCCC------hhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 271 TKGRFRCMKVLIVLDNVSK------VGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 271 l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
+.+.+..+.=+++||+-.. ...+..+...+ +..||++|.+..... ..++++.++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 4555666777888997643 22233333222 356888888877653 245666553
No 315
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.39 E-value=0.47 Score=57.09 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 172 YNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.++++--...++++..||.... ....+++.+.|++|+||||.++.+++.+. |+..=|..
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 3445555566777777775422 13467999999999999999999999863 56666653
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.29 E-value=0.036 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|+|++|.||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999863
No 317
>PRK08356 hypothetical protein; Provisional
Probab=94.29 E-value=0.19 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIF 218 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~ 218 (1095)
..+|+|.|++|.||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999993
No 318
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.28 E-value=0.15 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIF 218 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~ 218 (1095)
.+++|+|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999986
No 319
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.27 E-value=0.36 Score=57.28 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.-.+|+|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999998876543
No 320
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.27 E-value=0.073 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 321
>PRK09354 recA recombinase A; Provisional
Probab=94.23 E-value=0.25 Score=55.94 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 183 EQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 183 ~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..|-.+|. -+- ..-+++-|+|++|.||||||.++.......=..++|+.
T Consensus 46 ~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34445554 222 55689999999999999999998877665556778886
No 322
>PRK06217 hypothetical protein; Validated
Probab=94.21 E-value=0.16 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|.|.|++|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 323
>PRK13947 shikimate kinase; Provisional
Probab=94.18 E-value=0.036 Score=56.64 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.|.|+||+|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998753
No 324
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.18 E-value=0.11 Score=58.23 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..-+++-|+|.+|+||||||.++.......=..++|+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 55689999999999999999988877655555677875
No 325
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.15 E-value=0.11 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
|.+.|++|.||||+|+++...+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6799999999999999999887543
No 326
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.13 E-value=0.29 Score=49.59 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcC--CCccc---c-------C
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILS--EKLEV---A-------G 264 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~--~~~~~---~-------~ 264 (1095)
..+|-|++-.|.||||.|..++-+...+=-.++.+.-+.... . .+-....+.+.-.+.. ..... + .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-P-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-c-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 467888888999999999998887544322333232121110 1 2322333322000100 00000 0 0
Q ss_pred CCchHHHHhhhcCCeE-EEEecCCCChh-----hHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 265 PNIPQFTKGRFRCMKV-LIVLDNVSKVG-----QLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 265 ~~~~~~l~~~L~~kr~-LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
.+..+..++.+...++ |+|||.+...- ..+.+...+....++.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122334555555554 99999985322 2233333333345667899999987
No 327
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.09 E-value=0.043 Score=56.99 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
++.+|.|.|++|+||||+|+.+..++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 328
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.08 E-value=0.19 Score=51.84 Aligned_cols=121 Identities=20% Similarity=0.174 Sum_probs=62.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHh---cCC------------Ccc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI---LSE------------KLE 261 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l---~~~------------~~~ 261 (1095)
-.+++|.|..|.|||||++.++..... -.+.+++... .+......+-..+ ... ...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~--------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV--------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE--------EHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 357999999999999999999875432 2344444211 0111101111110 000 000
Q ss_pred cc-CCCchHHHHhhhcCCeEEEEecCCCCh------hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 262 VA-GPNIPQFTKGRFRCMKVLIVLDNVSKV------GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 262 ~~-~~~~~~~l~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
.. +....-.+.+.+..++=+++||+.... ..+..++..+ ..|..||++|.+.+.... .++++.+.
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 01 111111244455667778899987542 2222333232 236678999988887653 45665553
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.05 E-value=0.36 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 330
>PRK06547 hypothetical protein; Provisional
Probab=94.04 E-value=0.05 Score=55.62 Aligned_cols=27 Identities=37% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|+|.|++|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999999999999999999864
No 331
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.2 Score=54.32 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
-...++|||.+|.|||-+|++|+.++.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999876555
No 332
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.02 E-value=0.39 Score=49.47 Aligned_cols=119 Identities=17% Similarity=0.066 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHH--HH--hcCC-Cccc-c------
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQIL--ST--ILSE-KLEV-A------ 263 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll--~~--l~~~-~~~~-~------ 263 (1095)
....|-|+|-.|-||||.|..+.-+...+=-.+.++.-..... . .+-....+.+- .- .+.. .... +
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-S-TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-c-cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468889999999999999998887544433333333222211 1 23223332210 00 0110 0000 0
Q ss_pred -CCCchHHHHhhhcCCeE-EEEecCCCChh-----hHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 264 -GPNIPQFTKGRFRCMKV-LIVLDNVSKVG-----QLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 264 -~~~~~~~l~~~L~~kr~-LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
..+..+..++.+...+| |+|||.+...- ..+.+...+....++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 00112334555555454 99999995422 2334433333345667899999977
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.86 Score=51.98 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35789999999999999999999887644433455554
No 334
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.053 Score=64.70 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=44.4
Q ss_pred CCcccchhHHHHHHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
++-+|+++..++|.+.+.-.. +-+-.++..+|++|+|||.+|+.++.-+-..|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 568999999999999885432 24568999999999999999999999876666
No 335
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.99 E-value=0.13 Score=56.43 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..|.|.|.+|.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 36889999999999999999997765
No 336
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.32 Score=57.37 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=75.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCccccCCCchHHHHhhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~~~~~~~~~~l~~~L 275 (1095)
..=|.+||++|.|||-||++|+|.-.-.| ++ | .+. +++.. .++. ...+.+.+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V-------KGP-----ELlNkYVGES-----ErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V-------KGP-----ELLNKYVGES-----ERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e-------cCH-----HHHHHHhhhH-----HHHHHHHHHHhh
Confidence 34567999999999999999999866555 33 1 111 22222 1111 011111122222
Q ss_pred cCCeEEEEecCCCChh-------------hHHHHhcCCCCCC--CCCEEEEEeCchHHH-----HhcCcceEEEccCCCh
Q 047103 276 RCMKVLIVLDNVSKVG-------------QLEGLIGGLDQFG--LGSRIIITTRDKRVL-----EKFGVKKIYRVNGLQF 335 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~--~gsrIIiTTR~~~v~-----~~~~~~~~~~v~~L~~ 335 (1095)
....+.|.+|.++... ..+.|+..++... .|--||-.|--.++. .--..+...-|+..+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 3458999999996421 2566776666432 344455445444432 2123467888999999
Q ss_pred hHHHHHHHHhh
Q 047103 336 DVALEQFCNYA 346 (1095)
Q Consensus 336 ~ea~~Lf~~~a 346 (1095)
+|-.++++..+
T Consensus 682 ~eR~~ILK~~t 692 (802)
T KOG0733|consen 682 EERVAILKTIT 692 (802)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.03 Score=56.98 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFE 226 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~ 226 (1095)
+.|.+.|.+|+||||+|++++..++..-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45778999999999999999997665443
No 338
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.98 E-value=0.21 Score=60.06 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC---C-----CceEEEEecccc-cCC----------CCCH-HHHHHHHHHHhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG---F-----EGTCFVADVRRN-SGT----------GGGL-EHLQKQILSTILS 257 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~---F-----~~~~~v~~v~~~-~~~----------~~~l-~~l~~~ll~~l~~ 257 (1095)
-.|+|+|.-|+|||||.+.+....... . -...|+..-+.. ... ..+. ..-.+..+..++-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 468999999999999999997754322 0 111222211100 000 0011 2233333433221
Q ss_pred C--Ccc-----ccCCCc-hHHHHhhhcCCeEEEEecCCC------ChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcC
Q 047103 258 E--KLE-----VAGPNI-PQFTKGRFRCMKVLIVLDNVS------KVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFG 323 (1095)
Q Consensus 258 ~--~~~-----~~~~~~-~~~l~~~L~~kr~LlVLDdv~------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 323 (1095)
. ... ..+.+. .-.+...+-.+.=+||||.=. ..++++..+..+ +| .||+.|-|+..+...
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~v- 502 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRV- 502 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhh-
Confidence 1 110 122222 223444455677899999553 344455555443 23 589999999998876
Q ss_pred cceEEEccC
Q 047103 324 VKKIYRVNG 332 (1095)
Q Consensus 324 ~~~~~~v~~ 332 (1095)
+..++.++.
T Consensus 503 a~~i~~~~~ 511 (530)
T COG0488 503 ATRIWLVED 511 (530)
T ss_pred cceEEEEcC
Confidence 357777764
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.13 Score=51.65 Aligned_cols=123 Identities=24% Similarity=0.268 Sum_probs=65.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC 277 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 277 (1095)
.+++|.|..|.|||||++.+...+. ...+.+++.... .. . .........+. -+.+ . ..+....-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~-~-~~~~~~~~~i~-~~~q--l-S~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA-K-LPLEELRRRIG-YVPQ--L-SGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc-c-CCHHHHHhceE-EEee--C-CHHHHHHHHHHHHHhc
Confidence 6899999999999999999987643 345666654211 00 0 01111111100 0000 0 0111111224455556
Q ss_pred CeEEEEecCCCC---hh---hHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 278 MKVLIVLDNVSK---VG---QLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 278 kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
..=+++||+... .. .+..+...+. ..|..||++|.+...+... .++++.+.
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 678899998853 22 2333332222 2256789999888776654 34555553
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.96 E-value=0.044 Score=60.69 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=71.1
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQIL 252 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll 252 (1095)
+++.-.....+++.++|.... ..-+.|.|.|..|.||||+++++...+...-...+-+.+..+..-.
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~------------ 170 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP------------ 170 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S------------
T ss_pred hhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec------------
Confidence 445444455566666665432 3357899999999999999999998776552333444433221110
Q ss_pred HHhcCCCcc--ccCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEE-EEEeCc
Q 047103 253 STILSEKLE--VAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRI-IITTRD 315 (1095)
Q Consensus 253 ~~l~~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrI-IiTTR~ 315 (1095)
........ .......+.++..|+...=.||++.+.+.+.++.+... ..|..+ +-|...
T Consensus 171 -~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 171 -GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp -CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred -ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 00000000 12344566688888888888999999998887764322 356666 444443
No 341
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.93 E-value=0.0059 Score=73.64 Aligned_cols=129 Identities=25% Similarity=0.391 Sum_probs=65.5
Q ss_pred CCcceeecccCCCCccc---cCCCCCCccccEeeccCC-ccCcccc----ccccCCCCcceEeccCCCCCcccC-Ccc-c
Q 047103 566 APKLKYIDLNHSSNLTR---IPEPSETPNLDRMNLWNC-TGLALIP----SYIQNFNNLGNLSLEGCESLRCFP-QNI-H 635 (1095)
Q Consensus 566 l~~L~~L~Ls~n~~l~~---~p~~~~l~~L~~L~L~~~-~~l~~lp----~~i~~L~~L~~L~L~~c~~l~~lp-~~i-~ 635 (1095)
+++|+.|.+..+..... .+....+++|+.|++++| ......+ .....+++|+.|++++|..+...- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777777755554 233567788888888773 2222221 223345777778887766432210 000 0
Q ss_pred ccccceeeccCCcccCCCccccCCceEEEecCCC-Cc--cccCccCCCCCCcEEeccCCCCCCc--cccccCCCCCCCEE
Q 047103 636 FVSSIKINCSECVNLSEFPRISGNVVELKLRHTP-IE--EVPSSIDCLPDLETLEMSNCYSLKS--LSTNICKLKSLRSL 710 (1095)
Q Consensus 636 ~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~-i~--~lp~~i~~l~~L~~L~Ls~~~~l~~--lp~~l~~L~~L~~L 710 (1095)
.+++| +.|.+.++. ++ .+-.....+++|+.|+|++|..... +.....++++|+.|
T Consensus 267 ~c~~L--------------------~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 267 RCPNL--------------------ETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred hCCCc--------------------ceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 12233 344433332 22 1222235567788888887776532 22223345555555
Q ss_pred EccC
Q 047103 711 HLAF 714 (1095)
Q Consensus 711 ~Ls~ 714 (1095)
.+..
T Consensus 327 ~~~~ 330 (482)
T KOG1947|consen 327 KLLS 330 (482)
T ss_pred hhhh
Confidence 5443
No 342
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.91 E-value=0.21 Score=50.65 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=37.2
Q ss_pred hHHHHhhhcCCeEEEEecC----CCChhhHHH--HhcCCCCCCCCCEEEEEeCchHHHHhcC
Q 047103 268 PQFTKGRFRCMKVLIVLDN----VSKVGQLEG--LIGGLDQFGLGSRIIITTRDKRVLEKFG 323 (1095)
Q Consensus 268 ~~~l~~~L~~kr~LlVLDd----v~~~~~l~~--l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 323 (1095)
.-.|.+.+-++.-+++-|. ++....|+- +...+. ..|.-||++|-+.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 3356777788888999884 444444443 233332 56889999999999988764
No 343
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.89 E-value=0.15 Score=52.32 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc-----------cc-C
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE-----------VA-G 264 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~-----------~~-~ 264 (1095)
-.+++|.|..|.|||||++.++.... ...+.+++... ... . .. ....+.+ .-+.+...- .. +
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~-~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIK-K-EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Ecc-c-ch-HhhhccE-EEEecCCccccCCcHHHHhhcCHH
Confidence 45899999999999999999987543 23455554311 000 0 00 0000000 000000000 00 1
Q ss_pred CCchHHHHhhhcCCeEEEEecCCCCh------hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEc
Q 047103 265 PNIPQFTKGRFRCMKVLIVLDNVSKV------GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRV 330 (1095)
Q Consensus 265 ~~~~~~l~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 330 (1095)
....-.+...+..+.=+++||+.... ..+..+...+. ..|..||++|.+...+... .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 11111344556667788999987432 22333332322 2367799999988766543 3455544
No 344
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.89 E-value=0.19 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+++|+|..|+|||||++.++..+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 345
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.64 Score=58.50 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=74.4
Q ss_pred CCcccchhHHHHHHHhhhccC---CC--CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL---SD--TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---~~--~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
+.++|-++.+..|-+.+.... .+ ....+.+.|+.|+|||-||++++.-+.+..+.-+-+ ++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri-----------Dmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL-----------DMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe-----------chhhh
Confidence 467888888888888775422 12 467788999999999999999999886655544333 33344
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhhcCCeE-EEEecCCCChh
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRFRCMKV-LIVLDNVSKVG 291 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 291 (1095)
+. .+++.+.....-+.+....+.+.++.+.| .|.||||+..+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 44 45555555555555555668888888876 66689997644
No 346
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.84 E-value=0.084 Score=54.22 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...+|+|.|++|.||||+|++++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998753
No 347
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.83 E-value=0.16 Score=55.81 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=66.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc-----ccCCCchH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE-----VAGPNIPQ 269 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~-----~~~~~~~~ 269 (1095)
.+...++|+|..|.|||||++.+...+... .+.+++... ..... .....+...+ ..+.+.... .+......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 345789999999999999999999876543 344444211 11000 0111222111 111111110 01111122
Q ss_pred HHHhhhc-CCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHH
Q 047103 270 FTKGRFR-CMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLE 320 (1095)
Q Consensus 270 ~l~~~L~-~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 320 (1095)
-+...+. ...=++|+|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 2333333 4677999999988887777766543 4778999998776643
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=93.82 E-value=0.45 Score=49.51 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=29.9
Q ss_pred ccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 176 VGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.|+++-++.|.+.+. ....+.++|++|+|||||...+...
T Consensus 111 ~gi~eL~~~l~~~l~-----~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 111 WGVEELINAIKKLAK-----KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CCHHHHHHHHHHHhh-----cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 456666666666553 2346889999999999999999875
No 349
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.81 E-value=0.049 Score=54.49 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEecCCCcHHHHHHHHHHHH
Q 047103 202 IWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 202 I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|.|++|.||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 350
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.80 E-value=0.069 Score=55.08 Aligned_cols=25 Identities=44% Similarity=0.583 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+|+|.|.+|.||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 351
>PLN02796 D-glycerate 3-kinase
Probab=93.76 E-value=0.29 Score=55.17 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...-+|||.|..|.||||||+.+...+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 35678999999999999999999987754
No 352
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.72 E-value=0.093 Score=56.54 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
....+|||.|..|.|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 568899999999999999999999876543
No 353
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.72 E-value=0.059 Score=55.99 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=52.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcC--CCc-cccCCCchHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILS--EKL-EVAGPNIPQFTKG 273 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~--~~~-~~~~~~~~~~l~~ 273 (1095)
-..++|.|..|.||||+++.+...+... ...+.+.+..+.... . .... ++.. ... ........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998876532 233333322221100 0 0000 0000 000 0112334455667
Q ss_pred hhcCCeEEEEecCCCChhhHHHHh
Q 047103 274 RFRCMKVLIVLDNVSKVGQLEGLI 297 (1095)
Q Consensus 274 ~L~~kr~LlVLDdv~~~~~l~~l~ 297 (1095)
.++..+=.+|++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 777777888899998887766543
No 354
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.70 E-value=0.096 Score=55.02 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=29.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
....+|+|.|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999999875432334555
No 355
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.70 E-value=0.18 Score=55.01 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=51.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh----cCCCceEEEEecccccCCCCCHHHHHHHHHHH--hcCCCccc---cCCCc-
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS----GGFEGTCFVADVRRNSGTGGGLEHLQKQILST--ILSEKLEV---AGPNI- 267 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~----~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~--l~~~~~~~---~~~~~- 267 (1095)
+.++|.|-.|+|||||+..+.++.. .+-+.++|+. +.+.. .....+.+++... +...-.-. +....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 5679999999999999999887643 2235566654 43322 3455555555543 11110000 11000
Q ss_pred -------hHHHHhhh---cCCeEEEEecCCCChhh
Q 047103 268 -------PQFTKGRF---RCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 268 -------~~~l~~~L---~~kr~LlVLDdv~~~~~ 292 (1095)
.-.+.+.+ .++++|+++||+....+
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 11123333 26899999999966544
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.3 Score=49.91 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc---------c-cCCC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE---------V-AGPN 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~-~~~~ 266 (1095)
-.+++|.|..|.|||||++.++.-.. ...+.+++.... .. . .......+.+ .-+.....- . .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~-~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR-D-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh-h-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 45899999999999999999988543 234555543110 00 0 0011111000 000000000 0 0111
Q ss_pred chHHHHhhhcCCeEEEEecCCCC------hhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEc
Q 047103 267 IPQFTKGRFRCMKVLIVLDNVSK------VGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRV 330 (1095)
Q Consensus 267 ~~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 330 (1095)
..-.+...+..+.=+++||+-.. ...+..+...+. .+..||++|.+.+.... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11124445556677999998743 223334443332 34678889988877654 5566555
No 357
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.66 E-value=0.16 Score=64.02 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....++|....++++.+.+..-. ..-..|.|+|..|.|||++|+.++..-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999998887776543 333467799999999999999999864
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.62 E-value=0.22 Score=53.76 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=32.5
Q ss_pred HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 185 IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 185 l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
+-++|..+- ..-.++.|+|.+|.||||+|.++......+=..++|+.
T Consensus 14 LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 14 LDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 334443332 45678999999999999999998655333345677775
No 359
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.60 E-value=0.059 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.59 E-value=0.23 Score=50.83 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=63.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc---------cc-CCC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE---------VA-GPN 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~-~~~ 266 (1095)
-.+++|.|..|.|||||++.++.... ...+.+++... ... . .......+.+. -+.+...- .. +..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~-~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-Q-WDPNELGDHVG-YLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-c-CCHHHHHhheE-EECCCCccccCcHHHHCcCHHHH
Confidence 35899999999999999999987543 23444544311 100 0 11111111110 00110000 00 111
Q ss_pred chHHHHhhhcCCeEEEEecCCCCh------hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEcc
Q 047103 267 IPQFTKGRFRCMKVLIVLDNVSKV------GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVN 331 (1095)
Q Consensus 267 ~~~~l~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 331 (1095)
..-.+...+..+.=+++||+.... ..+..+...+. ..|..||++|.+.+... . .++++.+.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 111244445566678899987432 22333333322 24667889998887764 3 55666553
No 361
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.57 E-value=0.23 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887653
No 362
>PRK05439 pantothenate kinase; Provisional
Probab=93.55 E-value=0.1 Score=58.24 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 185 IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 185 l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+...|.........+|||.|.+|+||||+|+.+...+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 333443223356789999999999999999999886653
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.52 E-value=0.56 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
...++|+|++|+|||||...+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999875
No 364
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.52 E-value=0.25 Score=59.25 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCCcccchhHHHHHHHhhhccC-C-CCcEEEEEEecCCCcHHHHHHHHHHHHh-----cCCCceEEEEecccccCCCCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL-S-DTVQIVGIWGMGGIGKITLATAIFNQFS-----GGFEGTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~-~-~~~~vi~I~GmgGiGKTTLA~~v~~~~~-----~~F~~~~~v~~v~~~~~~~~~ 243 (1095)
.+..+-+|+.+..+|...+..-- + ..-..+-|.|.+|.|||..+..|.+.+. +.-....|+. +.. ..-..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-INg--m~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-ING--LRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ecc--eeecC
Confidence 45678899999999998885521 1 2345889999999999999999998543 2222233333 111 11145
Q ss_pred HHHHHHHHHHHhcCCCccccCCCchHHHHhhhc-----CCeEEEEecCCCChhh--HHHHhcCCCCC-CCCCEEEEEe
Q 047103 244 LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR-----CMKVLIVLDNVSKVGQ--LEGLIGGLDQF-GLGSRIIITT 313 (1095)
Q Consensus 244 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTT 313 (1095)
..++...|+.++.+..... ....+.+..+.. .+..++++|+++..-. -+-+-.-++|. .++||++|.+
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 7788899998877654432 111223444443 3468888998865432 22222335564 5789887754
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.059 Score=55.60 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=23.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.43 E-value=0.36 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
No 367
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.41 E-value=0.15 Score=54.40 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.|..+|..+- ..-.++.|.|.+|+||||+|.+++.....+=..++|+.
T Consensus 7 ~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444453332 45689999999999999999999987765545677775
No 368
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.40 E-value=0.17 Score=60.89 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=45.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
..-++.-++|++|+||||||..++.+-. |.. ..+.. +.. .....+.+.|...+... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--YsV----vEINA-SDe-Rt~~~v~~kI~~avq~~--------------s~ 381 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YSV----VEINA-SDE-RTAPMVKEKIENAVQNH--------------SV 381 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ceE----EEecc-ccc-ccHHHHHHHHHHHHhhc--------------cc
Confidence 4568999999999999999999998632 221 11211 222 33444555554443211 11
Q ss_pred h--cCCeEEEEecCCCCh
Q 047103 275 F--RCMKVLIVLDNVSKV 290 (1095)
Q Consensus 275 L--~~kr~LlVLDdv~~~ 290 (1095)
| ..+..-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 246788999999754
No 369
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.40 E-value=0.027 Score=36.09 Aligned_cols=21 Identities=52% Similarity=0.687 Sum_probs=16.4
Q ss_pred CCCeeeCCCCCCcccCcccCC
Q 047103 782 SLVELDLSRNNFESLPSGISH 802 (1095)
Q Consensus 782 ~L~~L~Ls~n~l~~lp~~l~~ 802 (1095)
+|++|+|++|+|+.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578888888888888876654
No 370
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.88 Score=56.68 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-++|+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999988763
No 371
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.33 E-value=0.33 Score=57.72 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 181 RIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-+.++.++|..+- ..-.++.|.|.+|+|||||+..++.....+=..++|+.
T Consensus 79 Gi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455556654333 44578999999999999999999887654434567775
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.32 E-value=0.12 Score=54.76 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=32.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..-+++.|+|.+|.||||+|..++......-..++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44689999999999999999999887766667888886
No 373
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.30 E-value=0.057 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 374
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.30 E-value=0.058 Score=57.64 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 375
>PRK13949 shikimate kinase; Provisional
Probab=93.28 E-value=0.064 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-|.|+||.|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 376
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.27 E-value=0.055 Score=56.82 Aligned_cols=23 Identities=48% Similarity=0.707 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|||.|.+|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 377
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.27 E-value=0.14 Score=50.49 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~ 232 (1095)
++|+|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 444444443
No 378
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.27 E-value=0.26 Score=55.18 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV 262 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 262 (1095)
..|...|..+.-..-+++-|+|..|+||||||..+.......-..++|++. +. . +-...++.++....+.
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-----e~--~---ld~~~a~~lGvdl~rl 108 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-----EH--A---LDPEYAESLGVDLDRL 108 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-----SS--------HHHHHHTT--GGGE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-----cc--c---chhhHHHhcCccccce
Confidence 344445542211345799999999999999999998887666667888862 21 1 2233344443322111
Q ss_pred ------cCCCchHHHHhhhcCC-eEEEEecCCCChh
Q 047103 263 ------AGPNIPQFTKGRFRCM-KVLIVLDNVSKVG 291 (1095)
Q Consensus 263 ------~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~ 291 (1095)
.+++....+...++.. --++|+|-|....
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 1222233344444433 4588999886543
No 379
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.27 E-value=0.89 Score=53.96 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.-++++++|+.|+||||++..++..+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 347999999999999999999998764
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.25 E-value=0.37 Score=57.19 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 182 IEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 182 ~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
+.++.++|..+- ..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345555554333 34568999999999999999999987764444667775
No 381
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.46 Score=57.22 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=88.4
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCC---------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC---ceEEEEeccc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELS---------DTVQIVGIWGMGGIGKITLATAIFNQFSGGFE---GTCFVADVRR 236 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~---~~~~v~~v~~ 236 (1095)
.....++-|.++..+++.+.+..-.+ .-++=+..+|++|.|||.||++++....-.|- +.-||..
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem--- 222 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM--- 222 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh---
Confidence 34567889999888887776644221 22566889999999999999999986432221 1111110
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh---------------h-hHHHHhcCC
Q 047103 237 NSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV---------------G-QLEGLIGGL 300 (1095)
Q Consensus 237 ~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---------------~-~l~~l~~~~ 300 (1095)
... -+. ....+...+..+.-+..|++|.++.. + .+..++...
T Consensus 223 -fVG-vGA--------------------sRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 223 -FVG-VGA--------------------SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred -hcC-CCc--------------------HHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh
Confidence 000 011 11112233334445678888876431 1 367777777
Q ss_pred CCCCCCCEEEE--EeCchHHH-----HhcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 301 DQFGLGSRIII--TTRDKRVL-----EKFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 301 ~~~~~gsrIIi--TTR~~~v~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
+.|+.+.-||| .|--.+|+ +.-..+..+.|+..+...-.+.+.-|+-
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 77764333333 23333333 2223456777887777778888876663
No 382
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.22 E-value=0.12 Score=61.29 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=51.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc------cCCCchH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV------AGPNIPQ 269 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~------~~~~~~~ 269 (1095)
-...+|+|.+|.|||||++.|++.+... =+..+++.-|.+-. ..+..+.+.+-.++-....+. ....+.-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999987543 34455555454432 223333333311111111110 0000111
Q ss_pred HHHhhh--cCCeEEEEecCCCChhh
Q 047103 270 FTKGRF--RCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 270 ~l~~~L--~~kr~LlVLDdv~~~~~ 292 (1095)
.+.+++ .++.|||++|++.....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 123333 57899999999966554
No 383
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.20 E-value=0.071 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHHh
Q 047103 200 VGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 384
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.19 E-value=0.13 Score=59.98 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=24.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+|.+.|.+|+||||+|.+++.++.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999998753
No 385
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.16 E-value=0.15 Score=56.62 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=25.7
Q ss_pred eEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 279 KVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 279 r~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+-+||+|...+. .++..+... .|+||||+.|---.
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~a 388 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPA 388 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHH
Confidence 568999999764 456666543 58999999987533
No 386
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.12 Score=54.36 Aligned_cols=57 Identities=26% Similarity=0.467 Sum_probs=40.6
Q ss_pred CCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEec
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADV 234 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v 234 (1095)
.++=|-.+.++++.+.....- -+..+=|.++|++|.|||-+|++|+|+ ...||+.++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr-----tdacfirvi 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR-----TDACFIRVI 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc-----cCceEEeeh
Confidence 345566777777776543321 144566789999999999999999998 345777654
No 387
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=1.8 Score=45.81 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=36.2
Q ss_pred CCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...++=|.+..++++.+.+...- -...+=+..+|++|.|||-+|++.+.+-..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 34556677777777766543221 023456779999999999999998876433
No 388
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.14 E-value=2 Score=46.26 Aligned_cols=182 Identities=14% Similarity=0.197 Sum_probs=100.3
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc------CCCceEEEEeccc------cc-
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG------GFEGTCFVADVRR------NS- 238 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~------~F~~~~~v~~v~~------~~- 238 (1095)
.+.+.+.++...++.++... .+..-.-++|++|.||-|.+..+.+++-+ +-+...|...... .+
T Consensus 12 l~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34577788777788777653 44677789999999999999888886432 2344445432211 00
Q ss_pred ---------CCCCCHHHHHHHHHHHhcCCC-ccccCCCchHHHHhhhcCCeE-EEEecCCCChh--hHHHHhcCCCCCCC
Q 047103 239 ---------GTGGGLEHLQKQILSTILSEK-LEVAGPNIPQFTKGRFRCMKV-LIVLDNVSKVG--QLEGLIGGLDQFGL 305 (1095)
Q Consensus 239 ---------~~~~~l~~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~--~l~~l~~~~~~~~~ 305 (1095)
+.+..-..+.++++.++.+.. .+.. ..+.| ++|+-.++... .-..|......-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 111112234445555433211 1111 11223 45566555421 11122222111234
Q ss_pred CCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCC
Q 047103 306 GSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 306 gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 370 (1095)
.+|+|+..-+.. +.... .-.-.++++..+++|-...++..+-++.-.-+ .+++.+|+++++|+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRN 221 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhccc
Confidence 567777433221 11111 12346799999999999999887744443222 68899999998875
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.13 E-value=0.13 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+|.+.|.-|.||||+++.++..+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999865
No 390
>PRK13948 shikimate kinase; Provisional
Probab=93.09 E-value=0.076 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+.|.++||.|.||||+++.+..++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457889999999999999999998864
No 391
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.06 E-value=0.062 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
.|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998755443
No 392
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.03 E-value=0.071 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|.|.|+.|.||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 393
>PRK13946 shikimate kinase; Provisional
Probab=93.03 E-value=0.072 Score=55.27 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+.|.+.||+|.||||+|+.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999874
No 394
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.01 E-value=0.076 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.++.|.|+.|+||||||+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.00 E-value=0.51 Score=48.09 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=43.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcC--
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRC-- 277 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-- 277 (1095)
+.|.|.+|.||||+|..+... .-..++|+... ...+. .+++.+..............+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~-----~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA-----EAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc-----CcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 578999999999999998765 23466777522 11333 34444433322222222222333345555532
Q ss_pred CeEEEEecCC
Q 047103 278 MKVLIVLDNV 287 (1095)
Q Consensus 278 kr~LlVLDdv 287 (1095)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2336889987
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.99 E-value=0.17 Score=57.10 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
.-..+.|.|..|.||||+++++...+.... ..+.+.+..+......+...+ . ..............+.++..|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~--~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----F--YSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----E--ecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999988664332 344444433321110000000 0 000000111233455677788
Q ss_pred cCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 276 RCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
+...=.+|+|.+...+.++.+. ....++.| ++.|+-...
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~-a~~~g~~~--~i~T~Ha~~ 254 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIR-AVNTGHPG--SITTLHAGS 254 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHH-HHhcCCCe--EEEEEeCCC
Confidence 8888889999999877665443 32222222 455655443
No 397
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.98 E-value=1.9 Score=48.69 Aligned_cols=48 Identities=21% Similarity=0.009 Sum_probs=32.2
Q ss_pred EEEccCCChhHHHHHHHHhhhccCCCC-cchHHHHHHHHHHhCCCCcce
Q 047103 327 IYRVNGLQFDVALEQFCNYAFKENRCP-KDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 327 ~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal 374 (1095)
+++|+.++.+|+..++..++-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764332221 223344455555669998643
No 398
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.38 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.-.+++|+|..|.|||||++.+.....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346899999999999999999987644
No 399
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.95 E-value=0.21 Score=58.72 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=51.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCccc----cCCC----
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLEV----AGPN---- 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~~----~~~~---- 266 (1095)
-..++|.|.+|+|||||+..+...... +-+.++|+. +.+.. ..+..+..+++.. ......-. +...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 357899999999999999998887653 345555553 43322 3344555555443 11111100 1100
Q ss_pred ----chHHHHhhh---cCCeEEEEecCCCChh
Q 047103 267 ----IPQFTKGRF---RCMKVLIVLDNVSKVG 291 (1095)
Q Consensus 267 ----~~~~l~~~L---~~kr~LlVLDdv~~~~ 291 (1095)
..-.+.+++ .++++|+++||+....
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 111233444 3789999999996543
No 400
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.94 E-value=0.098 Score=53.20 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999988764
No 401
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.90 E-value=0.15 Score=56.57 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999988876554
No 402
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.86 E-value=0.28 Score=57.49 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=52.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCccc----cCCC-----
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLEV----AGPN----- 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~~----~~~~----- 266 (1095)
-..++|.|-+|+|||||+..+......+...++-+.-+.+. ...+..+.++++.. ......-. +...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35689999999999999999887765443333323334332 23455566665543 11111100 1100
Q ss_pred ---chHHHHhhh---cCCeEEEEecCCCChh
Q 047103 267 ---IPQFTKGRF---RCMKVLIVLDNVSKVG 291 (1095)
Q Consensus 267 ---~~~~l~~~L---~~kr~LlVLDdv~~~~ 291 (1095)
..-.+.+++ +++++||++||+....
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 011234444 5689999999996543
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=92.83 E-value=0.18 Score=54.04 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.-.++.|.|.+|+||||+|..+......+=+.++|++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468889999999999999998776544445566664
No 404
>PHA02244 ATPase-like protein
Probab=92.82 E-value=0.32 Score=55.21 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCcccchhHHHH----HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 173 NGLVGLNSRIEQ----IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 173 ~~~vGr~~~~~~----l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++|....+.. +..++.. + .-|-|+|.+|+|||+||++++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~----~-~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA----N-IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc----C-CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 446665555543 3333332 2 24678999999999999999997543
No 405
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.82 E-value=0.14 Score=58.77 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCcccchhHHHHHHHhhhcc-----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 173 NGLVGLNSRIEQIKPLLCME-----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
..+||.++.++.+.-.+... .....+-|.++|++|+||||+|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45777777777665444321 011246788999999999999999999875443
No 406
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.0069 Score=64.10 Aligned_cols=84 Identities=25% Similarity=0.361 Sum_probs=41.7
Q ss_pred CccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCC
Q 047103 589 TPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHT 668 (1095)
Q Consensus 589 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n 668 (1095)
+.+.+.|++.||..... +....|+.|++|.|+-|... . |..|+ .| .+|++|+|..|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-s-------L~pl~----rC----------trLkElYLRkN 73 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-S-------LAPLQ----RC----------TRLKELYLRKN 73 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-c-------chhHH----HH----------HHHHHHHHHhc
Confidence 44555666666553321 22345666666666654321 1 11111 11 23446666666
Q ss_pred CCccccCc--cCCCCCCcEEeccCCCCCCc
Q 047103 669 PIEEVPSS--IDCLPDLETLEMSNCYSLKS 696 (1095)
Q Consensus 669 ~i~~lp~~--i~~l~~L~~L~Ls~~~~l~~ 696 (1095)
.|..+..- +.++++|+.|.|..|.-.+.
T Consensus 74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 74 CIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred ccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 66655432 45566666666666554443
No 407
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.78 E-value=0.56 Score=51.91 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=35.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
.-.++.|.|.+|+||||+|.+++.....+ =..++|+.. + ....++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-----E--~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-----E--EPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-----c--cCHHHHHHHHHHH
Confidence 34588899999999999999988876544 345667751 1 2344555555554
No 408
>PRK13975 thymidylate kinase; Provisional
Probab=92.72 E-value=0.099 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+|.|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 409
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.68 E-value=0.21 Score=54.98 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE 226 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~ 226 (1095)
+..+++.. .++.+|.|.|.+|.|||||+..+.+.+.....
T Consensus 94 ~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 94 RNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred HHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 34444433 56899999999999999999999998876653
No 410
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.55 Score=53.26 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=56.2
Q ss_pred HHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcC--C
Q 047103 181 RIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILS--E 258 (1095)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~--~ 258 (1095)
-+.++...|--+- -.-.+|.|-|-+|||||||.-+++.+++.+- .+.||+ .+.+ ..++. --...|+. .
T Consensus 78 g~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~Qik-lRA~RL~~~~~ 147 (456)
T COG1066 78 GIEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQIK-LRADRLGLPTN 147 (456)
T ss_pred ChHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHHHH-HHHHHhCCCcc
Confidence 3455555554332 2346899999999999999999999998776 777775 2222 22211 11223543 2
Q ss_pred CccccCCCchHHHHhhhc-CCeEEEEecCC
Q 047103 259 KLEVAGPNIPQFTKGRFR-CMKVLIVLDNV 287 (1095)
Q Consensus 259 ~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv 287 (1095)
+...-.+.-.+.|...+. .+.-|+|+|-+
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 222222222233444443 45678889977
No 411
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.64 E-value=0.094 Score=53.72 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|+|+.|.||||+|+.+..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=1.2 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.-.+|+++|..|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888753
No 413
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.62 E-value=0.083 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
++.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998863
No 414
>PTZ00494 tuzin-like protein; Provisional
Probab=92.60 E-value=1.2 Score=51.14 Aligned_cols=207 Identities=13% Similarity=0.082 Sum_probs=119.6
Q ss_pred HHHHHHHH-------------hhhccCCCCCCCC---ChHHHHHHHHHHHhhccccc----ccccCCCCCcccchhHHHH
Q 047103 125 KWRDELTE-------------TSHLAGHESTKFR---NDALLIDKIVEDVLKNLEKI----TISTDSYNGLVGLNSRIEQ 184 (1095)
Q Consensus 125 ~w~~aL~~-------------va~~~g~~~~~~~---~e~~~i~~iv~~v~~~l~~~----~~~~~~~~~~vGr~~~~~~ 184 (1095)
.||=+|++ |+...|| ..++. ..+-..+-.++...+.+.+. ...+.....+|.|+.+-..
T Consensus 304 d~RY~l~KYsG~vSa~~a~Lgv~svFgw-N~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~ 382 (664)
T PTZ00494 304 NFRYALAKYKGTMSCIAGVLVVAYVFTA-NLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEAL 382 (664)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHH
Confidence 57777666 3456777 66664 12223444556666655221 2234456789999999988
Q ss_pred HHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccC
Q 047103 185 IKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAG 264 (1095)
Q Consensus 185 l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~ 264 (1095)
+.+.|........|++.+.|.-|.||++|.+....+- --..+||+ ++.. ++-.+.+.+.|+..+.+.-+
T Consensus 383 vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg~-------EDtLrsVVKALgV~nve~CG 451 (664)
T PTZ00494 383 VRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGGT-------EDTLRSVVRALGVSNVEVCG 451 (664)
T ss_pred HHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecCC-------cchHHHHHHHhCCCChhhhc
Confidence 9888877655789999999999999999998766642 23456664 5432 33455666667776666533
Q ss_pred CCchHHHHhh-------hcCCeEEEEec--CCCChhh-HHHHhcCCCCCCCCCEEEEEeCchHHHHhc---CcceEEEcc
Q 047103 265 PNIPQFTKGR-------FRCMKVLIVLD--NVSKVGQ-LEGLIGGLDQFGLGSRIIITTRDKRVLEKF---GVKKIYRVN 331 (1095)
Q Consensus 265 ~~~~~~l~~~-------L~~kr~LlVLD--dv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~---~~~~~~~v~ 331 (1095)
+ ..+++.+. ..++.=+|||- +=.+..- ..+. -.+.....-+.|++----+.+-... ---..|-++
T Consensus 452 D-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VP 529 (664)
T PTZ00494 452 D-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIP 529 (664)
T ss_pred c-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCccceeEecC
Confidence 2 22333322 23344455543 2222221 1111 1122223346677644433321111 112579999
Q ss_pred CCChhHHHHHHHHh
Q 047103 332 GLQFDVALEQFCNY 345 (1095)
Q Consensus 332 ~L~~~ea~~Lf~~~ 345 (1095)
.++.++|.++-.+.
T Consensus 530 nFSr~QAf~YtqH~ 543 (664)
T PTZ00494 530 PFSRRQAFAYAEHT 543 (664)
T ss_pred CcCHHHHHHHHhcc
Confidence 99999999886553
No 415
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.60 E-value=0.11 Score=55.27 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRR 236 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~ 236 (1095)
....+|.++||+|.||||..+.++..++.++.. .++-|...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDP 57 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDP 57 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCH
Confidence 456788899999999999999999988777653 34444443
No 416
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.59 E-value=0.37 Score=51.69 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=28.8
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.++.+.+.... .+..+|||.|.||.|||||..++...+..+
T Consensus 16 ~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 33444443333 467899999999999999999998877654
No 417
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.59 E-value=0.85 Score=54.30 Aligned_cols=25 Identities=40% Similarity=0.520 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCCcHHH-HHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKIT-LATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTT-LA~~v~~~ 220 (1095)
+-+||.|+|-.|.|||| ||+.+|.+
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed 395 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED 395 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc
Confidence 34689999999999986 66777764
No 418
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.59 E-value=0.13 Score=52.30 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=33.7
Q ss_pred cccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 175 LVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
+||....++++.+.+..-...+ ..|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888888888776654233 44559999999999999999984
No 419
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.57 E-value=0.59 Score=54.68 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.1
Q ss_pred hHHHHHHHhhh-----ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 180 SRIEQIKPLLC-----MELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 180 ~~~~~l~~~L~-----~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+.++..||. ... -+-+++.|.|++|+||||..+.++..+.
T Consensus 89 kKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 34555666665 111 4567999999999999999999998643
No 420
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.56 E-value=0.38 Score=54.23 Aligned_cols=66 Identities=14% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH--h----cCCCceEEEEecccccCCCCCHHHHHHHHHHHh
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF--S----GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTI 255 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~--~----~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l 255 (1095)
..+-.+|..+- ..-+++-|+|.+|+||||||..++-.. . ..=..++|++ .+..+...++.+ +++.+
T Consensus 83 ~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId-----tE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 83 QALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID-----TEGTFRPDRIRA-IAERF 154 (313)
T ss_pred HHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE-----cCCCCCHHHHHH-HHHHc
Confidence 34444554333 456789999999999999998776432 1 1123677886 222245555543 34443
No 421
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.45 Score=52.27 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..-+++=|+|+.|.||||+|.+++-.....-..++|++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 56789999999999999999998877666666889997
No 422
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.55 E-value=0.19 Score=57.88 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCcccchhHHHHHHHhhhcc--------C---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 173 NGLVGLNSRIEQIKPLLCME--------L---SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~--------~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
..++|.+..++.+...+... . ....+.|.++|++|+||||||+.+...+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45788888888877666331 0 01236789999999999999999999765433
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.54 E-value=0.55 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.070 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
++++|.|+.|.|||||++.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998864
No 424
>PRK14526 adenylate kinase; Provisional
Probab=92.54 E-value=0.21 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|.|+|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.54 E-value=0.2 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 426
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.52 E-value=0.1 Score=52.57 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3478999999999999999998765554
No 427
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.50 E-value=0.15 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhc
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
|.|.|.+|+|||||++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 428
>PRK14529 adenylate kinase; Provisional
Probab=92.50 E-value=0.37 Score=51.31 Aligned_cols=90 Identities=22% Similarity=0.173 Sum_probs=47.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcCC-CceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCC
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGGF-EGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCM 278 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 278 (1095)
|.|.|++|.||||+|+.++.++.-.+ ... ..+++.......+....++++.+ ..-...+-....+.+++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~g---dllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESG---AIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccc---hhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhcc
Confidence 67899999999999999998764221 111 11222111112222333333322 11112222344466666432
Q ss_pred -eEEEEecCC-CChhhHHHH
Q 047103 279 -KVLIVLDNV-SKVGQLEGL 296 (1095)
Q Consensus 279 -r~LlVLDdv-~~~~~l~~l 296 (1095)
+-=+|||+. .+..|.+.|
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHH
Confidence 345899999 455665544
No 429
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.50 E-value=0.51 Score=55.27 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=52.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCcc-c---cCCC-----
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLE-V---AGPN----- 266 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~---~~~~----- 266 (1095)
-..++|.|.+|+|||||+..+......+...++-+.-+.+.. ..+..+.++++.. ......- . +...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 356899999999999999998887654333333333344322 3455566665443 1111100 0 1100
Q ss_pred ---chHHHHhhh---cCCeEEEEecCCCChhh
Q 047103 267 ---IPQFTKGRF---RCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 267 ---~~~~l~~~L---~~kr~LlVLDdv~~~~~ 292 (1095)
..-.+.+++ +++++|+|+||+....+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHHH
Confidence 111233444 45799999999966443
No 430
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.46 E-value=0.34 Score=55.61 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...-+|||.|..|.|||||++.+...+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~ 238 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRV 238 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999765543
No 431
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.43 E-value=0.26 Score=55.22 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC--CceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF--EGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F--~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
+.|.|.|..|.||||+++++.+.+.... +..+-+.+..+..-...+.. ++.. ........+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~---~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRT---SDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEe---cCCCCCHHHHHHHHh
Confidence 4677999999999999999998876532 23344443333211100000 0000 001114556688888
Q ss_pred cCCeEEEEecCCCChhhHHHH
Q 047103 276 RCMKVLIVLDNVSKVGQLEGL 296 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~l~~l 296 (1095)
+...=-||+..+.+.+.++.+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 888888899999998877654
No 432
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.37 E-value=0.11 Score=53.82 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=29.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCF 230 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~ 230 (1095)
.|+|.|+|+.|+|||||++.+..+...+|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4688999999999999999999998888854443
No 433
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.35 E-value=0.17 Score=55.83 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
++|+|+|.+|.|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 566654
No 434
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.35 E-value=5.6 Score=45.87 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=31.6
Q ss_pred HHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 182 IEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 182 ~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.++|.++|..+. ...+.+|-.+|.-|.||||-|-++++.++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 355666665311 134789999999999999999999988776
No 435
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.19 Score=52.60 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=38.7
Q ss_pred CCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.++=|.+-..+++.+.....- -+..+=|.++|++|.|||.||++|++.-...
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 456788888888877653321 1456778899999999999999999974433
No 436
>PRK14530 adenylate kinase; Provisional
Probab=92.26 E-value=0.11 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|.|+|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 437
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.26 E-value=0.13 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 438
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.25 E-value=0.32 Score=54.07 Aligned_cols=101 Identities=21% Similarity=0.394 Sum_probs=63.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH--hcCCCc------cc------
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST--ILSEKL------EV------ 262 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~--l~~~~~------~~------ 262 (1095)
-.-||+.|=+|+|||-|.+++.+.+..+........-+.+.... -..+..++.+. +..... +.
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 35689999999999999999999988777665555556665544 23455555444 111110 00
Q ss_pred ---cCCCchHHHHhhhcCCeEEEEecCCCChhh----HHHHhcCCC
Q 047103 263 ---AGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ----LEGLIGGLD 301 (1095)
Q Consensus 263 ---~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----l~~l~~~~~ 301 (1095)
.+..+++++++. .++.+|+.+||+..-.| .-.+++..|
T Consensus 224 ValtGlT~AEyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 224 VALTGLTMAEYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred ehhhhhhHHHHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 333444444443 36789999999966544 455555544
No 439
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.21 E-value=0.28 Score=46.57 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 200 VGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
|.+.|.||+||||+|..++..+..+-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68999999999999999999876543334434
No 440
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.21 E-value=0.27 Score=53.84 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=38.1
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH--hcC---C-CceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF--SGG---F-EGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~--~~~---F-~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
.|-++|..+- ..-.+.=|+|.+|+|||.||..++-.+ ... - ..++|++ .+..+...++.+ |++.
T Consensus 26 ~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-----Te~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-----TEGTFSPERLQQ-IAER 95 (256)
T ss_dssp HHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-----SSSSS-HHHHHH-HHHH
T ss_pred HHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe-----CCCCCCHHHHHH-Hhhc
Confidence 4445553322 334689999999999999998887543 221 1 2467775 222255666543 4444
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.21 E-value=0.1 Score=52.10 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIF 218 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~ 218 (1095)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.20 E-value=0.096 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999854
No 443
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.19 E-value=0.28 Score=46.75 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=29.5
Q ss_pred HHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 182 IEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 182 ~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
++.|...+.....++.-|++.+|.+|+|||.+|+.+++.
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 344444444444477899999999999999999888875
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.18 E-value=0.13 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
--++||+|.+|.||||||+.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 445
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.17 E-value=0.11 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999983
No 446
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.11 E-value=0.19 Score=58.69 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-..++|+|..|.|||||++.+...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999888754
No 447
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.10 E-value=0.3 Score=53.23 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcHHHHH-HHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCccc----c--------
Q 047103 198 QIVGIWGMGGIGKITLA-TAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKLEV----A-------- 263 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA-~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~~~----~-------- 263 (1095)
+.++|.|..|+|||||| ..+.++. +-+.++.+.-+.+.. ..+..+.+++... ......-. +
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 56899999999999996 5666653 234553444344322 3455566665543 11110000 1
Q ss_pred ----CCCchHHHHhhhcCCeEEEEecCCCChhh-HHHH
Q 047103 264 ----GPNIPQFTKGRFRCMKVLIVLDNVSKVGQ-LEGL 296 (1095)
Q Consensus 264 ----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-l~~l 296 (1095)
...+.+++++ +++.+|+|+||+....+ +.++
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 1112233333 47899999999976543 4443
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.09 E-value=0.27 Score=55.28 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=28.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
.+++...|.||+||||+|-+.+-+.+.....+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 57899999999999999999888877666554444
No 449
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.08 E-value=0.17 Score=55.85 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+.+.+... -+-+.++|+.|+|||++++....+.
T Consensus 23 ~~ll~~l~~~----~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLSN----GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHC----TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHc----CCcEEEECCCCCchhHHHHhhhccC
Confidence 3444444432 3566899999999999999987654
No 450
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.06 E-value=0.12 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|.|+|+.|.||||+|+.+..++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 451
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.05 E-value=0.24 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.|+|.|-||+||||+|..+..++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977766444
No 452
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.12 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|.|-|.+|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999999765
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.03 E-value=0.18 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999987654
No 454
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.00 E-value=0.24 Score=52.38 Aligned_cols=86 Identities=17% Similarity=0.376 Sum_probs=49.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH-hcCCCc-cc---c---------
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST-ILSEKL-EV---A--------- 263 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~-l~~~~~-~~---~--------- 263 (1095)
..++|.|.+|+|||+|+..+.+.... +..+++. +.+.. ..+.++.+++... ...... -. +
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~-iGer~---~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL-IGERG---REVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE-ESECH---HHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee-ccccc---hhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 46789999999999999999987642 3335554 32211 3345555555433 111100 00 1
Q ss_pred ---CCCchHHHHhhhcCCeEEEEecCCCChh
Q 047103 264 ---GPNIPQFTKGRFRCMKVLIVLDNVSKVG 291 (1095)
Q Consensus 264 ---~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 291 (1095)
+....+++++ .+|.+|+++||+....
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHHH
Confidence 1112233333 6899999999995543
No 455
>PRK04182 cytidylate kinase; Provisional
Probab=91.88 E-value=0.13 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|.|.|+.|.||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 456
>PRK15115 response regulator GlrR; Provisional
Probab=91.88 E-value=11 Score=44.94 Aligned_cols=48 Identities=27% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..++|....+.++.+....-. ..-..|.|.|.+|.|||++|+.+...-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766665544333 223456799999999999999998853
No 457
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.87 E-value=0.15 Score=51.11 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=29.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.++++|+|+.|.|||||..++..+++.+--.++-+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 478999999999999999999998876544444443
No 458
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.86 E-value=0.25 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCce
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGT 228 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~ 228 (1095)
....+|-..|.+|.||||||.+++.++...--.+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4467999999999999999999999887654333
No 459
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.85 E-value=0.1 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
|.|+|++|.||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 460
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.84 E-value=0.44 Score=55.50 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc--c---c--------
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE--V---A-------- 263 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~--~---~-------- 263 (1095)
-..++|.|..|.|||||++.++..... +..++. -+.+.. ..+..+.++++..-.....- . +
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 457899999999999999998864332 444443 343322 23344444443331000000 0 1
Q ss_pred ----CCCchHHHHhhhcCCeEEEEecCCCChh
Q 047103 264 ----GPNIPQFTKGRFRCMKVLIVLDNVSKVG 291 (1095)
Q Consensus 264 ----~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 291 (1095)
...+++++++ +++++|+++||+....
T Consensus 236 a~~~A~tiAEyfrd--~G~~VLl~~DslTR~A 265 (444)
T PRK08972 236 GCETATTIAEYFRD--QGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEEcChHHHH
Confidence 1112333333 4789999999996544
No 461
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.81 E-value=0.22 Score=61.26 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=55.7
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHH
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
++...+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+...+.. .++...|..+.. .....
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~ 94 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNP 94 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHH
Confidence 3444567999998888888766542 36889999999999999999987643 357778877522 34555
Q ss_pred HHHHHHHHhc
Q 047103 247 LQKQILSTIL 256 (1095)
Q Consensus 247 l~~~ll~~l~ 256 (1095)
+.+.+..+++
T Consensus 95 ~~~~v~~~~G 104 (637)
T PRK13765 95 KIRTVPAGKG 104 (637)
T ss_pred HHHHHHHhcC
Confidence 6666655444
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.77 E-value=0.12 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-.+|+|+|++|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998643
No 463
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.76 E-value=0.19 Score=52.26 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHH
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
..+++|-+..+..++-.... ..-+.++|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG-----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG-----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC-----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC-----CCCeEEECCCCCCHHHHHHHHHH
Confidence 46788988877777655432 35678999999999999999987
No 464
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=91.76 E-value=1.3 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.-.++|+|++++|||||..++..+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998763
No 465
>PRK13768 GTPase; Provisional
Probab=91.73 E-value=0.23 Score=54.38 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++.|+|.||+||||++..+...++.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 3578999999999999999988776543
No 466
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.72 E-value=0.32 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.-..++|+|..|+|||||++.+++...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 346789999999999999999987654
No 467
>PRK08149 ATP synthase SpaL; Validated
Probab=91.71 E-value=0.31 Score=56.78 Aligned_cols=89 Identities=13% Similarity=0.281 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc-----c-------
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV-----A------- 263 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~-----~------- 263 (1095)
+-..++|+|..|.|||||++.++.... -+..++. .+.+ +...+..+..+++.......... +
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g-~Ig~---rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE--ADVFVIG-LIGE---RGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC--CCeEEEE-EEee---CCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 346789999999999999998887432 2233332 2322 22455566565555322111111 1
Q ss_pred -----CCCchHHHHhhhcCCeEEEEecCCCChhh
Q 047103 264 -----GPNIPQFTKGRFRCMKVLIVLDNVSKVGQ 292 (1095)
Q Consensus 264 -----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~ 292 (1095)
...+.+++++ ++|++||++||+....+
T Consensus 224 ~a~~~a~tiAE~fr~--~G~~Vll~~DslTr~A~ 255 (428)
T PRK08149 224 NAALVATTVAEYFRD--QGKRVVLFIDSMTRYAR 255 (428)
T ss_pred hHHHHHHHHHHHHHH--cCCCEEEEccchHHHHH
Confidence 1112222332 47899999999965443
No 468
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.012 Score=62.27 Aligned_cols=43 Identities=28% Similarity=0.239 Sum_probs=27.5
Q ss_pred cCCCCCCCeeeCCCCCCcccCc--ccCCCCCCCEEeccCCCCccc
Q 047103 777 IGCLSSLVELDLSRNNFESLPS--GISHLSRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 777 l~~l~~L~~L~Ls~n~l~~lp~--~l~~L~~L~~L~L~~c~~l~~ 819 (1095)
+..+++|++|+|..|.|.++.+ -+.++++|+.|.|..|+-...
T Consensus 59 l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3445667777777777665543 356777777777777765433
No 469
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=0.23 Score=61.45 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CC-----ceEEEEecccccCCCCCHH
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FE-----GTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~-----~~~~v~~v~~~~~~~~~l~ 245 (1095)
.+.++||+.+++++.+.|.....+++ .++|.+|+|||++|.-++.++... -+ ..++--+ +.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD----------~g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD----------LG 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec----------HH
Confidence 36799999999999999987542232 367999999999999999986432 11 1222111 11
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhhh-cCCeEEEEecCCCC-----------hhhHHHHhcCCCCCCCCCEEEEEe
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGRF-RCMKVLIVLDNVSK-----------VGQLEGLIGGLDQFGLGSRIIITT 313 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~-----------~~~l~~l~~~~~~~~~gsrIIiTT 313 (1095)
.++ -+.....+-++..+.+-+.+ +..++.|.+|.+.. .+.-+-|.+.+. .|.--.|=.||
T Consensus 236 ~Lv-------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 236 SLV-------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred HHh-------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 111 11111112222211122222 23489999998732 122333333333 22222344555
Q ss_pred CchHHHHhc-------CcceEEEccCCChhHHHHHHHHhh
Q 047103 314 RDKRVLEKF-------GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 314 R~~~v~~~~-------~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
-++. -+.+ .--..+.|...+.+++.+++..-.
T Consensus 308 ~~EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4432 1111 123578899999999999987543
No 470
>PRK15453 phosphoribulokinase; Provisional
Probab=91.64 E-value=0.26 Score=53.86 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|-+|.||||+|+++...+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999997664
No 471
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.55 E-value=0.73 Score=57.58 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 183 EQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 183 ~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..|..+|. .+- ..-+++-|+|.+|+||||||..++......=..++|+.
T Consensus 46 ~~LD~lLg~GGi-p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 46 IALDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred HHHHHhhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 44555554 222 45688899999999999999887665544446678885
No 472
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.53 E-value=0.46 Score=57.28 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHhhhcCCeEEEEecCCCChh------hHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEccC
Q 047103 270 FTKGRFRCMKVLIVLDNVSKVG------QLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVNG 332 (1095)
Q Consensus 270 ~l~~~L~~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~~ 332 (1095)
.+.+.|-.+.=+|+||.=.+.- -++.++.. -+| -+||+|-|+..+..+ +.++++++.
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 3455566677799999665433 24444443 245 699999999988775 345555543
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.53 E-value=0.12 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.++.|+|+.|.|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999997754
No 474
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.52 E-value=0.26 Score=60.73 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=44.4
Q ss_pred CCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEec
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADV 234 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v 234 (1095)
-.++++|.++.++.+...+... +.+.++|++|+||||+|+++.+.+... |...+++.+.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~-----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK-----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 3467899998888888777542 255599999999999999999987544 4555566544
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.50 E-value=0.31 Score=55.92 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=55.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCC---ceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFE---GTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKG 273 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~---~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 273 (1095)
-..|.|.|+.|.||||+++++.+.+....+ .++.+.+--+. .+..+... ...+.+.....+.......++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIETI-SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----eccccccc-cceeeeeeccccccCHHHHHHH
Confidence 478999999999999999999987754432 23333322221 11111000 0000011111122344566888
Q ss_pred hhcCCeEEEEecCCCChhhHHHHh
Q 047103 274 RFRCMKVLIVLDNVSKVGQLEGLI 297 (1095)
Q Consensus 274 ~L~~kr~LlVLDdv~~~~~l~~l~ 297 (1095)
.|+...-.+++..+.+.+..+...
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 888888899999999888765443
No 476
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.49 E-value=0.2 Score=59.95 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+.+.+|||.|..|.||||||+.+...+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 568999999999999999999998764
No 477
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.47 E-value=0.25 Score=55.35 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCcccchhHHHHHHHhhhccC---CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 172 YNGLVGLNSRIEQIKPLLCMEL---SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.+.++|+++.++++.+.+...+ +..-+++-+.|+.|.||||||+.+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 3589999999999999986643 3567999999999999999999998876644
No 478
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.42 E-value=0.19 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999975
No 479
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.40 E-value=0.51 Score=49.19 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC---C-CceEEEEecccccCCC-CCHHHHHHHHHHHhcCCCccccCCCchH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG---F-EGTCFVADVRRNSGTG-GGLEHLQKQILSTILSEKLEVAGPNIPQ 269 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~---F-~~~~~v~~v~~~~~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~ 269 (1095)
+...-..|.|++|+|||||.+.+++-++.. | ...+-+-+-+..-..+ .+..+ .++...+..-+.......+..
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R~dVld~cpk~~gmmm 212 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRRMDVLDPCPKAEGMMM 212 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhhhhhcccchHHHHHHH
Confidence 334556799999999999999999866543 4 2333332222111110 01111 111111111111111111212
Q ss_pred HHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeC
Q 047103 270 FTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTR 314 (1095)
Q Consensus 270 ~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR 314 (1095)
+++. ...=.+|.|.+...++..++..++ ..|-++|.|.-
T Consensus 213 aIrs---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 213 AIRS---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred HHHh---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 2222 236688999998888776666554 45667776654
No 480
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.34 E-value=0.24 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
++.+.|.+|+||||+|..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998765
No 481
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.32 E-value=0.45 Score=51.75 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=36.2
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
++...+.... .+..+|||.|.||+|||||..++-.++..+=..+.-+ .+...|.
T Consensus 39 ~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl-AVDPSSp 92 (323)
T COG1703 39 ELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL-AVDPSSP 92 (323)
T ss_pred HHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE-EECCCCC
Confidence 4444443333 5678999999999999999999988875543334433 3444443
No 482
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.32 E-value=0.3 Score=49.16 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
++++|+|..|.|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987654
No 483
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.31 E-value=0.96 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+-.|+|+||+||||||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987654
No 484
>PRK13695 putative NTPase; Provisional
Probab=91.27 E-value=0.23 Score=50.97 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=25.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFV 231 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v 231 (1095)
.|+|.|.+|+|||||++.+++.+.. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999999987653 34433343
No 485
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.23 E-value=0.11 Score=31.01 Aligned_cols=17 Identities=53% Similarity=0.749 Sum_probs=8.3
Q ss_pred CCCCeeeCCCCCCcccC
Q 047103 781 SSLVELDLSRNNFESLP 797 (1095)
Q Consensus 781 ~~L~~L~Ls~n~l~~lp 797 (1095)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666677766666554
No 486
>PLN02200 adenylate kinase family protein
Probab=91.22 E-value=0.19 Score=54.20 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
...+|.|.|++|.||||+|+.++.++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998864
No 487
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.22 E-value=0.15 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
...+.|.|.|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56788999999999999999999754
No 488
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=91.22 E-value=0.28 Score=59.62 Aligned_cols=49 Identities=29% Similarity=0.513 Sum_probs=38.7
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
...++++|.+..++.+...+... ...-+.|+|.+|+||||+|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44567999999999998776442 23456799999999999999998753
No 489
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=2.1 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
|=-.++|++|.||||+..+++|.+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999643
No 490
>PLN02348 phosphoribulokinase
Probab=91.18 E-value=0.21 Score=57.17 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999998754
No 491
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.16 E-value=0.88 Score=47.05 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|.|.|.+|.||||+|+.+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998764
No 492
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.16 E-value=0.29 Score=57.19 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=35.0
Q ss_pred CcccchhHHHHHHHhhh-------ccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 174 GLVGLNSRIEQIKPLLC-------MEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~-------~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
.+||.+..++.+...+. ... .-.-+.|.++|++|+||||||+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 47888877776644331 000 01235688999999999999999998764333
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.15 E-value=0.42 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-..++|.|..|.|||||++.+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 45789999999999999999887544
No 494
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.23 Score=53.11 Aligned_cols=55 Identities=36% Similarity=0.507 Sum_probs=41.5
Q ss_pred CCCCcccchhHHHHHHHhhhccCC----------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELS----------DTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~----------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
...++=|.++.+++|++.....-. ...+=|.++|.+|.|||-||++|+|+-+.-|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 345677899999999887644320 2345567999999999999999999866544
No 495
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.14 E-value=0.17 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|+|.|+.|.||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 496
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=91.14 E-value=0.12 Score=50.74 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 176 VGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
||....++++.+.+..-. .....|.|+|..|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 567777777777776544 3345568999999999999999998533
No 497
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.11 E-value=0.52 Score=53.35 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
....+|||.|.+|+|||||+..+...+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 567899999999999999999988877643
No 498
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.10 E-value=0.33 Score=53.29 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
..-.++.|.|.+|.||||+|.+++.....+=+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999987765444445777776
No 499
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.09 E-value=2.2 Score=50.62 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=46.0
Q ss_pred cccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh-cCCCceEEEEecccccCCCCCHHHHHHHHHH
Q 047103 175 LVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS-GGFEGTCFVADVRRNSGTGGGLEHLQKQILS 253 (1095)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~-~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~ 253 (1095)
..|...-...|-+++. +- ..-.++.|-|.+|+||||+|..++..+. .+=..++|++ -. -...++...++.
T Consensus 174 ~~gi~tG~~~LD~~~~-G~-~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lE-m~~~~l~~Rl~~ 244 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GL-VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LE-MSAEQLGERLLA 244 (421)
T ss_pred CcceeCCChhHHHHhc-CC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CC-CCHHHHHHHHHH
Confidence 4555555556665554 22 3345888999999999999999987654 3333455664 11 345677777766
Q ss_pred H
Q 047103 254 T 254 (1095)
Q Consensus 254 ~ 254 (1095)
.
T Consensus 245 ~ 245 (421)
T TIGR03600 245 S 245 (421)
T ss_pred H
Confidence 5
No 500
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.05 E-value=0.33 Score=60.27 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998864
Done!