Query 047103
Match_columns 1095
No_of_seqs 1046 out of 5428
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 9.9E-49 3.4E-53 390.7 11.2 163 1-169 13-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2.5E-47 8.6E-52 385.7 9.0 159 1-162 40-200 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-40 9E-45 401.7 14.0 277 176-463 131-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 4E-33 1.4E-37 373.4 14.5 280 168-461 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 5.5E-32 1.9E-36 331.1 13.7 259 173-454 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 7.5E-30 2.6E-34 314.1 12.2 272 168-457 119-448 (591)
7 3rgz_A Protein brassinosteroid 100.0 2.1E-28 7.1E-33 310.2 21.1 334 495-845 298-723 (768)
8 3rgz_A Protein brassinosteroid 100.0 5.5E-28 1.9E-32 306.3 20.8 334 496-838 323-739 (768)
9 4ecn_A Leucine-rich repeat pro 99.9 7.4E-27 2.5E-31 294.5 23.8 345 493-844 325-823 (876)
10 4eco_A Uncharacterized protein 99.9 1.6E-26 5.5E-31 286.3 21.3 299 539-843 198-582 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.3E-30 283.3 29.2 309 511-838 487-839 (876)
12 3vq2_A TLR4, TOLL-like recepto 99.9 1E-25 3.5E-30 278.2 26.1 125 495-628 36-167 (606)
13 3t6q_A CD180 antigen; protein- 99.9 6.1E-25 2.1E-29 271.3 31.7 326 496-838 62-461 (606)
14 4eco_A Uncharacterized protein 99.9 7.2E-26 2.5E-30 280.4 23.3 314 507-838 239-599 (636)
15 3h16_A TIR protein; bacteria T 99.9 1.1E-27 3.8E-32 239.0 3.3 112 1-113 25-136 (154)
16 3v47_A TOLL-like receptor 5B a 99.9 2.8E-25 9.7E-30 264.3 24.5 331 495-843 34-412 (455)
17 3t6q_A CD180 antigen; protein- 99.9 9.6E-25 3.3E-29 269.6 30.1 333 494-843 36-442 (606)
18 3vq2_A TLR4, TOLL-like recepto 99.9 4.3E-25 1.5E-29 272.7 25.6 178 657-844 349-538 (606)
19 2z63_A TOLL-like receptor 4, v 99.9 8.1E-25 2.8E-29 268.0 27.1 125 495-628 32-163 (570)
20 2z81_A CD282 antigen, TOLL-lik 99.9 3.4E-25 1.2E-29 270.2 22.6 320 495-837 30-484 (549)
21 2z7x_B TOLL-like receptor 1, v 99.9 7E-25 2.4E-29 265.6 24.2 168 660-837 304-479 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-24 1.1E-28 262.2 27.7 322 495-838 56-509 (562)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.7E-29 264.0 22.7 155 655-817 321-481 (520)
24 3oja_B Anopheles plasmodium-re 99.9 1.7E-24 5.8E-29 266.5 24.5 271 549-837 76-356 (597)
25 3o6n_A APL1; leucine-rich repe 99.9 2.7E-24 9.1E-29 250.5 24.1 271 549-837 70-350 (390)
26 3j0a_A TOLL-like receptor 5; m 99.9 4.3E-24 1.5E-28 273.4 26.3 62 658-719 266-328 (844)
27 3v47_A TOLL-like receptor 5B a 99.9 8.6E-24 2.9E-28 251.4 26.6 309 495-819 58-410 (455)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-23 4.7E-28 268.8 28.9 318 495-834 28-409 (844)
29 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-23 7.4E-28 261.1 29.0 109 659-769 249-362 (680)
30 2id5_A Lingo-1, leucine rich r 99.9 1.4E-23 4.8E-28 251.3 25.0 285 516-837 33-331 (477)
31 4fmz_A Internalin; leucine ric 99.9 2.4E-23 8E-28 238.4 24.9 295 511-837 40-344 (347)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-23 4.1E-28 257.2 23.7 299 495-817 80-510 (562)
33 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-22 4.2E-27 254.3 32.4 287 549-837 249-595 (680)
34 2z81_A CD282 antigen, TOLL-lik 99.9 9.6E-24 3.3E-28 257.3 20.3 329 496-837 10-442 (549)
35 4fmz_A Internalin; leucine ric 99.9 7.5E-23 2.6E-27 234.2 25.7 288 496-816 49-345 (347)
36 1jl5_A Outer protein YOPM; leu 99.9 3.4E-22 1.2E-26 236.9 30.3 301 495-849 75-379 (454)
37 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-24 2E-28 239.8 14.2 248 567-843 50-308 (313)
38 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-22 1.2E-26 236.9 29.6 289 496-815 47-350 (457)
39 2z63_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 252.0 22.1 331 495-844 56-536 (570)
40 1o6v_A Internalin A; bacterial 99.9 2.2E-22 7.6E-27 240.0 26.7 305 497-839 52-366 (466)
41 2id5_A Lingo-1, leucine rich r 99.9 3.6E-22 1.2E-26 239.0 26.9 285 518-843 14-312 (477)
42 1o6v_A Internalin A; bacterial 99.9 6.7E-22 2.3E-26 235.9 27.6 289 514-837 45-342 (466)
43 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6.1E-26 230.9 29.6 297 508-843 35-355 (457)
44 3oja_B Anopheles plasmodium-re 99.9 3.7E-22 1.3E-26 245.5 23.2 295 495-817 55-358 (597)
45 3o6n_A APL1; leucine-rich repe 99.9 5.2E-22 1.8E-26 231.2 23.1 295 495-817 49-352 (390)
46 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-21 3.8E-26 243.0 27.0 126 495-629 56-188 (635)
47 1ogq_A PGIP-2, polygalacturona 99.9 4E-23 1.4E-27 232.9 11.6 226 564-819 73-306 (313)
48 1jl5_A Outer protein YOPM; leu 99.9 2.1E-21 7.1E-26 230.1 26.7 285 515-852 111-421 (454)
49 1xku_A Decorin; proteoglycan, 99.9 2.1E-21 7.3E-26 220.5 25.7 237 567-837 52-304 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7.3E-26 220.7 22.9 277 515-837 33-331 (332)
51 4fcg_A Uncharacterized protein 99.9 6.3E-22 2.2E-26 224.5 17.1 216 568-814 82-311 (328)
52 1xku_A Decorin; proteoglycan, 99.9 2.3E-20 7.9E-25 212.0 24.7 241 568-843 32-279 (330)
53 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-20 9E-25 211.7 23.2 255 549-838 34-306 (332)
54 4fcg_A Uncharacterized protein 99.9 5.7E-21 2E-25 216.6 17.5 205 588-824 79-296 (328)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1E-19 3.6E-24 222.3 27.7 252 516-816 41-296 (622)
56 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-19 8.6E-24 221.9 27.4 331 495-839 35-555 (635)
57 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.3E-24 213.9 24.8 221 567-816 75-302 (452)
58 2z80_A TOLL-like receptor 2, v 99.8 1.8E-20 6.2E-25 215.0 15.3 225 563-816 72-313 (353)
59 3zyj_A Leucine-rich repeat-con 99.8 2.4E-19 8.3E-24 212.1 24.8 221 567-816 64-291 (440)
60 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 203.6 19.9 221 567-837 28-259 (306)
61 3ub2_A TOLL/interleukin-1 rece 99.8 1.2E-21 4.1E-26 192.2 1.8 125 1-130 15-145 (146)
62 2z66_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 203.0 18.5 223 571-843 11-240 (306)
63 3o53_A Protein LRIM1, AGAP0063 99.8 4.9E-21 1.7E-25 216.3 5.3 239 565-841 32-277 (317)
64 3zyi_A Leucine-rich repeat-con 99.8 7.3E-19 2.5E-23 208.7 23.6 218 548-794 75-303 (452)
65 1wwl_A Monocyte differentiatio 99.8 7.9E-21 2.7E-25 214.1 5.4 252 509-816 37-308 (312)
66 3zyj_A Leucine-rich repeat-con 99.8 9.5E-19 3.2E-23 207.0 22.7 203 563-794 84-292 (440)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-20 4.4E-25 212.8 6.2 256 497-819 16-277 (317)
68 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-19 8.4E-24 199.0 16.2 202 567-817 32-238 (285)
69 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.2E-23 191.5 21.7 217 570-838 14-237 (285)
70 2z80_A TOLL-like receptor 2, v 99.8 3.3E-19 1.1E-23 204.5 14.4 244 567-840 52-315 (353)
71 3oja_A Leucine-rich immune mol 99.8 4.3E-19 1.5E-23 212.2 15.2 214 565-816 32-249 (487)
72 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.8E-22 204.3 27.2 249 549-839 41-297 (622)
73 1z7x_W Ribonuclease inhibitor; 99.8 4.3E-22 1.5E-26 237.1 -11.6 333 495-837 7-409 (461)
74 3oja_A Leucine-rich immune mol 99.8 3.4E-19 1.2E-23 213.2 10.3 228 548-814 34-272 (487)
75 1z7x_W Ribonuclease inhibitor; 99.8 2E-20 6.9E-25 222.6 -0.9 323 508-837 49-438 (461)
76 1wwl_A Monocyte differentiatio 99.8 8.1E-20 2.8E-24 205.8 3.0 240 565-837 41-307 (312)
77 2z62_A TOLL-like receptor 4, v 99.7 2.3E-17 7.8E-22 182.2 19.9 199 568-816 29-236 (276)
78 1p9a_G Platelet glycoprotein I 99.7 3.7E-17 1.2E-21 181.8 21.5 201 563-816 6-207 (290)
79 2o6q_A Variable lymphocyte rec 99.7 3.4E-16 1.2E-20 172.2 22.5 196 568-816 17-217 (270)
80 3rfs_A Internalin B, repeat mo 99.7 6.5E-17 2.2E-21 178.2 15.4 203 565-825 39-242 (272)
81 1fyx_A TOLL-like receptor 2; b 99.7 6.8E-19 2.3E-23 173.8 -0.6 96 1-98 10-110 (149)
82 4glp_A Monocyte differentiatio 99.7 1.8E-17 6.2E-22 186.3 10.2 205 588-816 89-306 (310)
83 2xwt_C Thyrotropin receptor; s 99.7 8.8E-17 3E-21 173.5 15.0 37 777-815 200-237 (239)
84 2z62_A TOLL-like receptor 4, v 99.7 1.9E-16 6.4E-21 174.8 17.3 200 546-794 26-237 (276)
85 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5.3E-21 178.5 16.8 191 565-816 39-229 (308)
86 3rfs_A Internalin B, repeat mo 99.7 9.7E-17 3.3E-21 176.7 14.5 159 564-750 60-219 (272)
87 2o6q_A Variable lymphocyte rec 99.7 9.7E-16 3.3E-20 168.5 21.8 195 516-750 17-219 (270)
88 1p9a_G Platelet glycoprotein I 99.7 8.5E-16 2.9E-20 170.8 20.4 198 510-749 5-208 (290)
89 2js7_A Myeloid differentiation 99.7 4.1E-18 1.4E-22 169.9 1.4 93 1-95 21-117 (160)
90 4ay9_X Follicle-stimulating ho 99.7 3.9E-16 1.3E-20 178.6 17.5 153 563-715 50-212 (350)
91 2j67_A TOLL like receptor 10; 99.7 5.9E-18 2E-22 171.4 1.6 90 1-92 40-133 (178)
92 2xwt_C Thyrotropin receptor; s 99.7 4.4E-16 1.5E-20 167.9 16.2 205 580-839 23-239 (239)
93 2ast_B S-phase kinase-associat 99.7 9.2E-18 3.2E-22 190.8 2.8 223 567-837 70-304 (336)
94 1t3g_A X-linked interleukin-1 99.7 8.7E-18 3E-22 167.4 2.0 96 1-96 7-115 (159)
95 2ast_B S-phase kinase-associat 99.6 2.8E-17 9.7E-22 186.8 2.3 185 508-747 61-258 (336)
96 4glp_A Monocyte differentiatio 99.6 6.1E-16 2.1E-20 173.8 13.1 197 567-795 91-308 (310)
97 2ca6_A RAN GTPase-activating p 99.6 1.5E-17 5.3E-22 193.0 -0.6 36 780-815 273-314 (386)
98 4ay9_X Follicle-stimulating ho 99.6 3.2E-15 1.1E-19 171.0 17.6 215 590-834 30-254 (350)
99 2ca6_A RAN GTPase-activating p 99.6 1.5E-17 5.1E-22 193.2 -2.9 176 659-837 95-314 (386)
100 1h6u_A Internalin H; cell adhe 99.6 4.5E-15 1.6E-19 166.5 17.0 199 511-799 37-235 (308)
101 3ogk_B Coronatine-insensitive 99.6 6.1E-17 2.1E-21 199.0 -1.3 311 512-837 161-524 (592)
102 3m19_A Variable lymphocyte rec 99.6 2.6E-14 9E-19 155.2 18.7 167 661-837 17-190 (251)
103 3m19_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 154.6 19.3 158 567-751 35-194 (251)
104 3goz_A Leucine-rich repeat-con 99.6 7.8E-17 2.7E-21 185.3 -1.7 214 567-815 22-264 (362)
105 3ogk_B Coronatine-insensitive 99.6 1E-16 3.6E-21 196.9 -1.2 302 510-818 187-527 (592)
106 3goz_A Leucine-rich repeat-con 99.6 1.2E-16 4.2E-21 183.7 -2.1 232 571-837 2-264 (362)
107 3cvr_A Invasion plasmid antige 99.6 3.4E-14 1.2E-18 171.4 17.9 185 568-819 60-245 (571)
108 1h6t_A Internalin B; cell adhe 99.5 1.4E-14 4.9E-19 161.0 12.3 172 586-817 42-213 (291)
109 3cvr_A Invasion plasmid antige 99.5 1.4E-14 4.9E-19 174.7 12.0 187 516-760 60-254 (571)
110 1dce_A Protein (RAB geranylger 99.5 5.2E-16 1.8E-20 188.2 -1.5 56 683-748 443-498 (567)
111 1m9s_A Internalin B; cell inva 99.5 3.1E-14 1.1E-18 173.7 14.2 119 662-816 91-209 (605)
112 2o6s_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 147.3 14.0 160 567-760 28-189 (208)
113 2p1m_B Transport inhibitor res 99.5 1.4E-16 4.8E-21 195.8 -8.1 181 657-837 288-517 (594)
114 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 144.4 15.9 170 662-846 11-185 (208)
115 4ezg_A Putative uncharacterize 99.5 8.3E-14 2.8E-18 145.3 11.3 146 658-815 44-192 (197)
116 2p1m_B Transport inhibitor res 99.5 8.2E-16 2.8E-20 188.9 -4.8 299 511-816 152-518 (594)
117 3e6j_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 144.2 16.1 146 660-815 21-170 (229)
118 4ezg_A Putative uncharacterize 99.5 2E-13 7E-18 142.3 12.0 152 565-749 42-194 (197)
119 1m9s_A Internalin B; cell inva 99.5 4.5E-13 1.5E-17 163.4 16.5 159 564-759 62-220 (605)
120 1h6t_A Internalin B; cell adhe 99.4 4.4E-13 1.5E-17 148.9 14.4 150 564-750 65-214 (291)
121 2fna_A Conserved hypothetical 99.4 5.6E-13 1.9E-17 152.4 15.2 269 167-453 7-355 (357)
122 2v9t_B SLIT homolog 2 protein 99.4 9.2E-13 3.1E-17 139.9 15.8 129 659-816 33-164 (220)
123 2qen_A Walker-type ATPase; unk 99.4 2.8E-13 9.5E-18 154.5 12.2 271 167-453 6-347 (350)
124 2v70_A SLIT-2, SLIT homolog 2 99.4 9.8E-13 3.4E-17 139.7 15.3 146 662-816 15-165 (220)
125 2xot_A Amphoterin-induced prot 99.4 5.3E-13 1.8E-17 153.1 13.0 129 659-815 40-174 (361)
126 1xeu_A Internalin C; cellular 99.4 6.8E-13 2.3E-17 145.1 10.9 119 661-816 66-184 (263)
127 2v9t_B SLIT homolog 2 protein 99.4 3.1E-12 1E-16 135.9 15.5 133 590-749 32-165 (220)
128 1xeu_A Internalin C; cellular 99.4 3.4E-13 1.2E-17 147.4 8.3 150 564-751 38-187 (263)
129 1w5s_A Origin recognition comp 99.4 1.5E-12 5E-17 152.2 14.2 265 171-440 20-371 (412)
130 2v70_A SLIT-2, SLIT homolog 2 99.4 3.1E-12 1.1E-16 135.8 15.0 57 569-625 34-92 (220)
131 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.3E-17 150.1 12.5 155 568-749 40-202 (361)
132 3e6j_A Variable lymphocyte rec 99.4 4.7E-12 1.6E-16 135.3 15.9 57 568-624 41-98 (229)
133 1dce_A Protein (RAB geranylger 99.3 2.4E-14 8.3E-19 173.6 -7.6 185 586-818 345-547 (567)
134 2ell_A Acidic leucine-rich nuc 99.3 4.2E-12 1.5E-16 128.5 9.7 130 658-816 24-159 (168)
135 4b8c_D Glucose-repressible alc 99.3 8.3E-13 2.8E-17 165.1 5.4 125 605-759 215-339 (727)
136 4b8c_D Glucose-repressible alc 99.3 4.9E-13 1.7E-17 167.2 2.6 139 586-754 220-359 (727)
137 2je0_A Acidic leucine-rich nuc 99.3 6.4E-12 2.2E-16 124.4 8.5 127 658-813 17-149 (149)
138 2qby_B CDC6 homolog 3, cell di 99.3 5.9E-11 2E-15 137.2 17.1 256 173-440 20-339 (384)
139 1w8a_A SLIT protein; signaling 99.2 6.7E-11 2.3E-15 122.6 13.5 126 661-816 11-138 (192)
140 2ell_A Acidic leucine-rich nuc 99.2 2.3E-11 7.9E-16 123.1 9.5 127 567-715 24-157 (168)
141 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.5E-15 120.4 14.4 125 661-816 13-138 (193)
142 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 120.8 7.2 75 662-744 68-148 (149)
143 1a9n_A U2A', U2A'; complex (nu 99.1 6.5E-11 2.2E-15 120.8 8.7 127 659-815 20-151 (176)
144 1w8a_A SLIT protein; signaling 99.1 2.6E-10 8.9E-15 118.1 13.4 126 570-718 11-139 (192)
145 2o6r_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 114.2 14.9 126 660-816 9-136 (177)
146 2v1u_A Cell division control p 99.1 2.7E-10 9.4E-15 131.5 12.4 230 171-410 17-305 (387)
147 2qby_A CDC6 homolog 1, cell di 99.1 2.1E-10 7.2E-15 132.4 10.6 233 170-408 17-299 (386)
148 1njg_A DNA polymerase III subu 99.1 1E-09 3.5E-14 117.6 15.1 196 169-378 19-228 (250)
149 1a9n_A U2A', U2A'; complex (nu 99.1 2.1E-10 7.3E-15 116.9 8.2 126 566-716 18-151 (176)
150 1fnn_A CDC6P, cell division co 99.0 1.8E-09 6.3E-14 124.7 15.6 285 172-461 16-387 (389)
151 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4E-14 113.3 12.2 109 658-794 31-139 (193)
152 3sb4_A Hypothetical leucine ri 99.0 1.4E-09 4.7E-14 122.9 13.5 252 514-787 48-327 (329)
153 2o6r_A Variable lymphocyte rec 99.0 2.3E-09 7.9E-14 109.2 13.6 35 590-624 28-62 (177)
154 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.6E-14 123.9 11.1 247 549-811 50-328 (329)
155 2chg_A Replication factor C sm 98.9 7.1E-09 2.4E-13 109.3 14.1 185 169-375 13-201 (226)
156 1ds9_A Outer arm dynein; leuci 98.9 2.1E-11 7E-16 127.1 -6.5 129 567-719 18-154 (198)
157 1ds9_A Outer arm dynein; leuci 98.9 1E-11 3.4E-16 129.5 -9.3 135 588-754 16-158 (198)
158 2r9u_A Variable lymphocyte rec 98.9 1.1E-08 3.9E-13 103.8 12.5 56 661-718 15-70 (174)
159 3g39_A Variable lymphocyte rec 98.8 1.8E-08 6.3E-13 101.9 12.6 57 660-718 11-67 (170)
160 4fdw_A Leucine rich hypothetic 98.8 2.2E-07 7.6E-12 107.5 23.0 208 568-815 136-356 (401)
161 4fdw_A Leucine rich hypothetic 98.8 1.8E-07 6.1E-12 108.2 21.6 82 731-814 295-380 (401)
162 1sxj_B Activator 1 37 kDa subu 98.7 1.6E-07 5.3E-12 105.4 14.3 181 169-373 17-204 (323)
163 3g39_A Variable lymphocyte rec 98.6 1.1E-07 3.8E-12 96.1 11.4 103 570-719 12-116 (170)
164 2r9u_A Variable lymphocyte rec 98.6 1E-07 3.5E-12 96.7 11.1 102 570-718 15-118 (174)
165 3un9_A NLR family member X1; l 98.6 1.4E-09 4.8E-14 124.7 -3.6 87 659-748 127-223 (372)
166 3un9_A NLR family member X1; l 98.6 1.6E-09 5.5E-14 124.2 -3.5 138 659-816 102-251 (372)
167 4fs7_A Uncharacterized protein 98.6 5E-06 1.7E-10 96.0 25.6 123 677-812 249-374 (394)
168 1iqp_A RFCS; clamp loader, ext 98.5 1.9E-07 6.6E-12 104.8 10.9 184 169-376 21-210 (327)
169 2ifg_A High affinity nerve gro 98.5 3E-07 1E-11 104.3 11.5 81 662-750 12-94 (347)
170 1hqc_A RUVB; extended AAA-ATPa 98.4 1.1E-06 3.8E-11 98.5 14.0 250 169-449 8-307 (324)
171 3h4m_A Proteasome-activating n 98.4 2.3E-06 7.9E-11 94.1 14.7 158 168-348 12-203 (285)
172 1jr3_A DNA polymerase III subu 98.4 2E-06 6.7E-11 98.6 13.9 194 170-377 13-220 (373)
173 2ifg_A High affinity nerve gro 98.4 8.7E-07 3E-11 100.5 10.6 56 662-718 60-116 (347)
174 2ra8_A Uncharacterized protein 98.4 1.6E-07 5.5E-12 106.8 4.4 37 779-815 277-318 (362)
175 2chq_A Replication factor C sm 98.3 2.5E-06 8.4E-11 95.3 13.5 182 169-375 13-201 (319)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.3 9.7E-06 3.3E-10 87.7 16.7 177 171-371 4-214 (262)
177 4fs7_A Uncharacterized protein 98.3 3.9E-05 1.3E-09 88.5 22.5 79 732-814 272-353 (394)
178 1jbk_A CLPB protein; beta barr 98.3 1.7E-06 5.9E-11 88.4 9.8 51 170-223 19-69 (195)
179 3bos_A Putative DNA replicatio 98.3 1.4E-06 4.8E-11 92.9 9.0 172 170-375 25-214 (242)
180 3d8b_A Fidgetin-like protein 1 98.3 2.2E-05 7.5E-10 89.2 19.3 195 146-370 62-286 (357)
181 2z4s_A Chromosomal replication 98.2 2E-06 7E-11 100.5 10.1 155 197-373 130-301 (440)
182 4gt6_A Cell surface protein; l 98.2 6.3E-05 2.1E-09 86.8 21.9 82 732-815 284-368 (394)
183 4gt6_A Cell surface protein; l 98.2 7.5E-05 2.6E-09 86.1 22.0 82 731-814 260-344 (394)
184 1d2n_A N-ethylmaleimide-sensit 98.2 4.9E-05 1.7E-09 82.8 19.1 172 172-371 32-230 (272)
185 3b9p_A CG5977-PA, isoform A; A 98.1 3.4E-05 1.2E-09 85.2 17.1 191 154-372 3-226 (297)
186 3eie_A Vacuolar protein sortin 98.1 2.4E-05 8.2E-10 87.6 16.0 177 167-370 12-219 (322)
187 1sxj_A Activator 1 95 kDa subu 98.1 2.1E-05 7.1E-10 94.1 15.9 192 169-377 35-252 (516)
188 3te6_A Regulatory protein SIR3 98.1 5.2E-06 1.8E-10 91.8 9.6 163 174-346 21-211 (318)
189 2ra8_A Uncharacterized protein 98.1 5.4E-07 1.9E-11 102.4 1.8 67 679-748 250-319 (362)
190 1sxj_D Activator 1 41 kDa subu 98.1 2.5E-05 8.6E-10 88.5 15.0 194 169-375 33-232 (353)
191 1l8q_A Chromosomal replication 98.1 2E-05 6.9E-10 88.3 13.5 177 170-371 8-201 (324)
192 3pvs_A Replication-associated 98.0 1.6E-05 5.4E-10 92.8 12.3 177 169-375 22-212 (447)
193 1xwi_A SKD1 protein; VPS4B, AA 98.0 9.8E-05 3.3E-09 82.5 17.9 176 169-371 8-215 (322)
194 2qp9_X Vacuolar protein sortin 98.0 6.7E-05 2.3E-09 85.1 16.7 176 168-370 46-252 (355)
195 1sxj_E Activator 1 40 kDa subu 98.0 3.4E-05 1.2E-09 87.5 14.3 196 169-375 10-234 (354)
196 3syl_A Protein CBBX; photosynt 98.0 3.4E-05 1.2E-09 85.7 13.7 150 174-347 32-218 (309)
197 3cf0_A Transitional endoplasmi 98.0 8.3E-05 2.8E-09 82.3 15.4 157 168-346 10-199 (301)
198 2zan_A Vacuolar protein sortin 97.9 0.0002 6.8E-09 83.7 18.9 181 168-371 129-337 (444)
199 2p65_A Hypothetical protein PF 97.9 3.9E-05 1.3E-09 77.8 11.1 50 171-223 20-69 (187)
200 3uk6_A RUVB-like 2; hexameric 97.9 0.0001 3.5E-09 84.0 15.5 194 172-374 43-299 (368)
201 3vfd_A Spastin; ATPase, microt 97.9 0.00012 4E-09 84.3 15.8 179 168-371 110-318 (389)
202 3pfi_A Holliday junction ATP-d 97.9 3.2E-05 1.1E-09 87.2 10.8 174 170-375 26-224 (338)
203 3u61_B DNA polymerase accessor 97.9 0.00017 5.7E-09 80.7 16.4 175 169-373 22-211 (324)
204 1io0_A Tropomodulin; LRR prote 97.7 3.8E-06 1.3E-10 86.0 -0.2 119 677-815 32-162 (185)
205 4h09_A Hypothetical leucine ri 97.7 0.0019 6.5E-08 73.7 21.9 125 676-812 212-341 (379)
206 2w58_A DNAI, primosome compone 97.7 2.9E-05 9.8E-10 80.5 5.6 63 170-232 22-89 (202)
207 3ec2_A DNA replication protein 97.6 6.7E-05 2.3E-09 76.1 7.4 51 172-222 9-63 (180)
208 4b4t_J 26S protease regulatory 97.6 0.00049 1.7E-08 77.9 14.9 155 169-346 144-332 (405)
209 2r62_A Cell division protease 97.6 3.9E-05 1.3E-09 83.3 5.5 156 169-346 7-196 (268)
210 1lv7_A FTSH; alpha/beta domain 97.6 0.00044 1.5E-08 74.4 13.2 56 168-223 7-71 (257)
211 3hu3_A Transitional endoplasmi 97.6 0.00039 1.3E-08 81.9 13.5 153 172-347 203-386 (489)
212 4b4t_L 26S protease subunit RP 97.5 0.00083 2.8E-08 77.3 15.5 156 169-347 177-366 (437)
213 1a5t_A Delta prime, HOLB; zinc 97.5 0.00039 1.3E-08 78.1 12.6 172 179-377 8-204 (334)
214 1io0_A Tropomodulin; LRR prote 97.5 8.4E-06 2.9E-10 83.4 -1.4 117 658-794 36-164 (185)
215 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00089 3E-08 84.0 16.5 153 170-346 183-362 (758)
216 4b4t_H 26S protease regulatory 97.5 0.0006 2E-08 78.2 13.4 154 170-346 206-393 (467)
217 4b4t_M 26S protease regulatory 97.5 0.00039 1.3E-08 79.9 11.8 157 168-347 176-366 (434)
218 3pxg_A Negative regulator of g 97.5 0.00069 2.3E-08 79.7 13.9 150 170-346 177-338 (468)
219 3n70_A Transport activator; si 97.5 0.00012 4E-09 71.5 5.9 47 174-221 2-48 (145)
220 4b4t_K 26S protease regulatory 97.4 0.001 3.5E-08 76.4 14.4 153 171-346 170-357 (428)
221 2ce7_A Cell division protein F 97.4 0.0015 5.1E-08 76.3 15.9 155 170-346 13-199 (476)
222 1sxj_C Activator 1 40 kDa subu 97.4 0.0011 3.8E-08 74.5 14.5 181 170-373 22-207 (340)
223 4h09_A Hypothetical leucine ri 97.4 0.016 5.3E-07 66.0 24.3 151 677-849 190-344 (379)
224 4fcw_A Chaperone protein CLPB; 97.4 0.00063 2.2E-08 75.4 12.0 51 173-223 17-73 (311)
225 1qvr_A CLPB protein; coiled co 97.4 0.00048 1.6E-08 87.4 11.6 51 170-223 167-217 (854)
226 4b4t_I 26S protease regulatory 97.3 0.0014 4.6E-08 74.6 13.4 154 170-346 179-366 (437)
227 1ofh_A ATP-dependent HSL prote 97.3 0.0017 5.8E-08 71.7 14.0 50 173-222 15-75 (310)
228 2bjv_A PSP operon transcriptio 97.3 0.00098 3.4E-08 72.0 11.0 50 172-222 5-54 (265)
229 3t15_A Ribulose bisphosphate c 97.2 0.0011 3.8E-08 72.8 11.1 31 195-225 34-64 (293)
230 3e4g_A ATP synthase subunit S, 97.2 0.00013 4.4E-09 73.1 2.9 97 696-819 52-154 (176)
231 3pxi_A Negative regulator of g 97.2 0.0018 6.3E-08 81.1 14.1 150 170-346 177-338 (758)
232 1ojl_A Transcriptional regulat 97.1 0.003 1E-07 69.8 13.0 48 173-221 2-49 (304)
233 3rw6_A Nuclear RNA export fact 97.0 0.00036 1.2E-08 75.2 3.9 68 679-753 168-237 (267)
234 3rw6_A Nuclear RNA export fact 97.0 0.00024 8.2E-09 76.5 2.4 84 657-742 169-257 (267)
235 1ixz_A ATP-dependent metallopr 97.0 0.0045 1.5E-07 66.3 12.5 156 168-346 11-199 (254)
236 3e4g_A ATP synthase subunit S, 96.9 0.00016 5.4E-09 72.4 0.7 84 659-748 62-151 (176)
237 1iy2_A ATP-dependent metallopr 96.9 0.0026 9E-08 69.2 10.4 55 168-222 35-98 (278)
238 2kjq_A DNAA-related protein; s 96.9 0.0014 4.8E-08 64.1 7.0 36 197-232 36-71 (149)
239 2gno_A DNA polymerase III, gam 96.8 0.002 7E-08 70.9 8.5 146 177-346 1-152 (305)
240 2x8a_A Nuclear valosin-contain 96.8 0.014 4.7E-07 63.3 14.9 153 171-346 8-191 (274)
241 3pxi_A Negative regulator of g 96.8 0.0038 1.3E-07 78.2 12.0 151 173-346 491-675 (758)
242 3cf2_A TER ATPase, transitiona 96.8 0.0034 1.2E-07 77.6 11.1 154 170-346 201-385 (806)
243 3m6a_A ATP-dependent protease 96.7 0.014 4.7E-07 69.8 15.4 51 174-224 82-135 (543)
244 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0075 2.6E-07 70.8 12.6 153 168-346 26-214 (499)
245 1ypw_A Transitional endoplasmi 96.5 0.0057 1.9E-07 76.7 10.6 153 170-346 201-385 (806)
246 2qgz_A Helicase loader, putati 96.3 0.0097 3.3E-07 65.7 9.8 62 171-232 122-188 (308)
247 1ye8_A Protein THEP1, hypothet 95.9 0.051 1.8E-06 54.6 11.7 24 199-222 2-25 (178)
248 1r6b_X CLPA protein; AAA+, N-t 95.8 0.014 4.8E-07 73.1 8.9 50 173-222 458-513 (758)
249 1j8m_F SRP54, signal recogniti 95.8 0.021 7.1E-07 62.6 9.0 35 197-231 98-132 (297)
250 1qvr_A CLPB protein; coiled co 95.8 0.021 7.2E-07 72.4 10.3 51 173-223 558-614 (854)
251 2c9o_A RUVB-like 1; hexameric 95.7 0.021 7.2E-07 66.8 9.0 54 171-224 35-90 (456)
252 3co5_A Putative two-component 95.6 0.0027 9.4E-08 61.5 1.1 47 174-221 5-51 (143)
253 1zu4_A FTSY; GTPase, signal re 95.6 0.038 1.3E-06 61.1 10.2 107 101-224 14-132 (320)
254 2xxa_A Signal recognition part 95.5 0.052 1.8E-06 62.6 11.4 75 148-224 45-127 (433)
255 3e70_C DPA, signal recognition 95.4 0.047 1.6E-06 60.5 10.2 29 195-223 127-155 (328)
256 1rz3_A Hypothetical protein rb 95.4 0.025 8.6E-07 58.0 7.4 45 178-222 3-47 (201)
257 1in4_A RUVB, holliday junction 95.3 0.011 3.8E-07 66.1 4.9 172 171-374 23-219 (334)
258 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.02 6.7E-07 62.7 6.0 33 197-232 123-155 (331)
259 1vma_A Cell division protein F 95.1 0.11 3.9E-06 56.8 11.9 45 180-224 82-131 (306)
260 1g5t_A COB(I)alamin adenosyltr 95.0 0.021 7.2E-07 57.8 5.3 134 198-333 29-180 (196)
261 3jvv_A Twitching mobility prot 94.9 0.068 2.3E-06 59.9 9.6 111 197-319 123-234 (356)
262 3c8u_A Fructokinase; YP_612366 94.8 0.025 8.6E-07 58.4 5.5 28 195-222 20-47 (208)
263 2eyu_A Twitching motility prot 94.8 0.029 9.9E-07 60.2 6.1 112 196-318 24-135 (261)
264 1qhx_A CPT, protein (chloramph 94.8 0.014 4.8E-07 58.4 3.3 25 198-222 4-28 (178)
265 2r44_A Uncharacterized protein 94.7 0.019 6.4E-07 64.1 4.4 48 172-224 26-73 (331)
266 3hr8_A Protein RECA; alpha and 94.6 0.12 4E-06 57.9 10.5 51 181-232 45-96 (356)
267 3cf2_A TER ATPase, transitiona 94.6 0.022 7.4E-07 70.5 4.9 154 171-346 475-661 (806)
268 3dm5_A SRP54, signal recogniti 94.6 0.12 4E-06 59.4 10.6 36 196-231 99-134 (443)
269 3kb2_A SPBC2 prophage-derived 94.5 0.019 6.6E-07 56.9 3.6 25 198-222 2-26 (173)
270 1pgv_A TMD-1, tropomodulin TMD 94.5 0.0088 3E-07 60.9 0.9 38 680-717 40-82 (197)
271 3vaa_A Shikimate kinase, SK; s 94.4 0.021 7.1E-07 58.6 3.6 26 197-222 25-50 (199)
272 2ga8_A Hypothetical 39.9 kDa p 94.4 0.031 1.1E-06 62.0 5.1 50 176-225 2-52 (359)
273 2b8t_A Thymidine kinase; deoxy 94.3 0.02 6.7E-07 59.8 3.2 110 197-317 12-127 (223)
274 2yhs_A FTSY, cell division pro 94.3 0.16 5.6E-06 58.8 11.1 36 196-232 292-327 (503)
275 3trf_A Shikimate kinase, SK; a 94.3 0.021 7.1E-07 57.6 3.3 26 197-222 5-30 (185)
276 3hws_A ATP-dependent CLP prote 94.3 0.028 9.7E-07 63.5 4.8 48 175-222 17-76 (363)
277 3kl4_A SRP54, signal recogniti 94.2 0.12 4.3E-06 59.2 9.8 29 196-224 96-124 (433)
278 1odf_A YGR205W, hypothetical 3 94.2 0.044 1.5E-06 59.7 5.8 29 195-223 29-57 (290)
279 3lw7_A Adenylate kinase relate 94.2 0.022 7.4E-07 56.6 3.1 22 198-220 2-23 (179)
280 1rj9_A FTSY, signal recognitio 94.2 0.12 4E-06 56.7 9.1 36 196-232 101-136 (304)
281 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.039 1.3E-06 64.8 5.4 45 173-222 22-66 (500)
282 1uj2_A Uridine-cytidine kinase 94.0 0.03 1E-06 59.8 3.9 28 195-222 20-47 (252)
283 1nks_A Adenylate kinase; therm 93.9 0.053 1.8E-06 54.7 5.5 26 198-223 2-27 (194)
284 3uie_A Adenylyl-sulfate kinase 93.9 0.056 1.9E-06 55.3 5.6 28 195-222 23-50 (200)
285 1puj_A YLQF, conserved hypothe 93.9 0.46 1.6E-05 51.4 13.1 49 40-94 13-61 (282)
286 1zuh_A Shikimate kinase; alpha 93.8 0.031 1.1E-06 55.4 3.4 27 196-222 6-32 (168)
287 2cvh_A DNA repair and recombin 93.8 0.14 4.8E-06 52.8 8.6 33 197-232 20-52 (220)
288 2og2_A Putative signal recogni 93.8 0.2 7E-06 56.0 10.2 35 196-231 156-190 (359)
289 1zp6_A Hypothetical protein AT 93.7 0.034 1.2E-06 56.2 3.6 25 196-220 8-32 (191)
290 2v3c_C SRP54, signal recogniti 93.7 0.054 1.9E-06 62.4 5.6 29 196-224 98-126 (432)
291 1ly1_A Polynucleotide kinase; 93.6 0.037 1.3E-06 55.2 3.7 22 198-219 3-24 (181)
292 1kag_A SKI, shikimate kinase I 93.6 0.028 9.6E-07 55.9 2.7 25 198-222 5-29 (173)
293 2rhm_A Putative kinase; P-loop 93.6 0.047 1.6E-06 55.2 4.4 26 197-222 5-30 (193)
294 2orw_A Thymidine kinase; TMTK, 93.6 0.021 7.1E-07 57.8 1.6 25 198-222 4-28 (184)
295 1sky_E F1-ATPase, F1-ATP synth 93.5 0.097 3.3E-06 60.3 7.2 33 199-231 153-186 (473)
296 3iij_A Coilin-interacting nucl 93.5 0.028 9.5E-07 56.4 2.4 25 197-221 11-35 (180)
297 2jaq_A Deoxyguanosine kinase; 93.5 0.036 1.2E-06 56.6 3.4 24 199-222 2-25 (205)
298 2yvu_A Probable adenylyl-sulfa 93.5 0.068 2.3E-06 53.9 5.3 28 196-223 12-39 (186)
299 1ex7_A Guanylate kinase; subst 93.4 0.024 8.4E-07 57.3 1.8 28 198-225 2-29 (186)
300 3ice_A Transcription terminati 93.4 0.019 6.6E-07 64.0 1.0 27 197-223 174-200 (422)
301 3tlx_A Adenylate kinase 2; str 93.4 0.071 2.4E-06 56.4 5.5 27 195-221 27-53 (243)
302 1xjc_A MOBB protein homolog; s 93.3 0.067 2.3E-06 53.0 4.8 29 196-224 3-31 (169)
303 1kht_A Adenylate kinase; phosp 93.3 0.046 1.6E-06 55.1 3.8 26 198-223 4-29 (192)
304 4eun_A Thermoresistant glucoki 93.3 0.059 2E-06 55.1 4.6 25 197-221 29-53 (200)
305 1knq_A Gluconate kinase; ALFA/ 93.3 0.05 1.7E-06 54.2 4.0 25 197-221 8-32 (175)
306 1um8_A ATP-dependent CLP prote 93.3 0.057 2E-06 61.3 4.9 26 197-222 72-97 (376)
307 1kgd_A CASK, peripheral plasma 93.3 0.039 1.3E-06 55.5 3.1 25 198-222 6-30 (180)
308 1via_A Shikimate kinase; struc 93.3 0.042 1.4E-06 54.9 3.2 24 199-222 6-29 (175)
309 3b9q_A Chloroplast SRP recepto 93.3 0.21 7.2E-06 54.6 9.1 35 196-231 99-133 (302)
310 3t61_A Gluconokinase; PSI-biol 93.2 0.04 1.4E-06 56.4 3.2 25 197-221 18-42 (202)
311 2ze6_A Isopentenyl transferase 93.2 0.049 1.7E-06 58.2 3.9 25 198-222 2-26 (253)
312 2ffh_A Protein (FFH); SRP54, s 93.2 0.24 8E-06 56.8 9.6 29 196-224 97-125 (425)
313 2c95_A Adenylate kinase 1; tra 93.1 0.048 1.7E-06 55.3 3.4 26 197-222 9-34 (196)
314 1g8p_A Magnesium-chelatase 38 93.0 0.044 1.5E-06 61.4 3.4 52 168-222 19-70 (350)
315 2ewv_A Twitching motility prot 93.0 0.037 1.3E-06 62.7 2.7 110 196-317 135-245 (372)
316 1tev_A UMP-CMP kinase; ploop, 93.0 0.06 2E-06 54.5 4.0 25 197-221 3-27 (196)
317 1jr3_D DNA polymerase III, del 93.0 0.99 3.4E-05 50.2 14.4 154 196-375 17-182 (343)
318 2px0_A Flagellar biosynthesis 92.9 0.26 9E-06 53.7 9.2 27 196-222 104-130 (296)
319 2pt5_A Shikimate kinase, SK; a 92.9 0.059 2E-06 53.2 3.7 24 199-222 2-25 (168)
320 2plr_A DTMP kinase, probable t 92.9 0.094 3.2E-06 53.8 5.5 28 198-225 5-32 (213)
321 1uf9_A TT1252 protein; P-loop, 92.9 0.065 2.2E-06 54.7 4.1 26 195-220 6-31 (203)
322 1ukz_A Uridylate kinase; trans 92.8 0.066 2.3E-06 54.8 4.1 27 195-221 13-39 (203)
323 2bdt_A BH3686; alpha-beta prot 92.8 0.059 2E-06 54.5 3.7 31 198-232 3-33 (189)
324 2j37_W Signal recognition part 92.8 0.11 3.7E-06 61.0 6.3 30 195-224 99-128 (504)
325 3cm0_A Adenylate kinase; ATP-b 92.8 0.061 2.1E-06 54.1 3.7 25 198-222 5-29 (186)
326 1y63_A LMAJ004144AAA protein; 92.8 0.059 2E-06 54.3 3.6 24 197-220 10-33 (184)
327 2iyv_A Shikimate kinase, SK; t 92.8 0.059 2E-06 54.2 3.5 24 199-222 4-27 (184)
328 1cke_A CK, MSSA, protein (cyti 92.7 0.06 2.1E-06 56.1 3.7 25 198-222 6-30 (227)
329 3a00_A Guanylate kinase, GMP k 92.7 0.043 1.5E-06 55.5 2.4 28 198-225 2-29 (186)
330 1nn5_A Similar to deoxythymidy 92.7 0.091 3.1E-06 54.1 5.0 28 197-224 9-36 (215)
331 1qf9_A UMP/CMP kinase, protein 92.7 0.072 2.5E-06 53.7 4.1 26 197-222 6-31 (194)
332 2bwj_A Adenylate kinase 5; pho 92.7 0.067 2.3E-06 54.4 3.8 25 198-222 13-37 (199)
333 2if2_A Dephospho-COA kinase; a 92.6 0.062 2.1E-06 55.0 3.6 21 199-219 3-23 (204)
334 3fwy_A Light-independent proto 92.6 0.1 3.5E-06 57.5 5.5 30 195-224 46-75 (314)
335 3tau_A Guanylate kinase, GMP k 92.6 0.059 2E-06 55.6 3.3 28 196-223 7-34 (208)
336 1e6c_A Shikimate kinase; phosp 92.6 0.052 1.8E-06 53.8 2.8 25 198-222 3-27 (173)
337 2vli_A Antibiotic resistance p 92.6 0.045 1.5E-06 54.9 2.4 25 198-222 6-30 (183)
338 2qor_A Guanylate kinase; phosp 92.5 0.05 1.7E-06 55.9 2.7 27 196-222 11-37 (204)
339 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.15 5.2E-06 56.6 6.7 102 198-317 172-276 (330)
340 2wsm_A Hydrogenase expression/ 92.5 0.18 6.1E-06 52.2 6.9 45 177-224 13-57 (221)
341 2cdn_A Adenylate kinase; phosp 92.5 0.071 2.4E-06 54.5 3.8 26 197-222 20-45 (201)
342 2qt1_A Nicotinamide riboside k 92.5 0.075 2.6E-06 54.6 3.9 26 195-220 19-44 (207)
343 3asz_A Uridine kinase; cytidin 92.4 0.087 3E-06 54.2 4.4 27 196-222 5-31 (211)
344 3tr0_A Guanylate kinase, GMP k 92.4 0.066 2.2E-06 54.8 3.4 24 198-221 8-31 (205)
345 2pbr_A DTMP kinase, thymidylat 92.3 0.075 2.6E-06 53.7 3.7 24 199-222 2-25 (195)
346 3rfe_A Platelet glycoprotein I 92.3 0.14 4.9E-06 48.3 5.3 36 781-816 31-67 (130)
347 2hf9_A Probable hydrogenase ni 92.3 0.22 7.6E-06 51.6 7.4 40 182-224 26-65 (226)
348 1tue_A Replication protein E1; 92.2 0.096 3.3E-06 53.3 4.2 44 178-223 41-84 (212)
349 2j41_A Guanylate kinase; GMP, 92.2 0.072 2.5E-06 54.5 3.4 25 197-221 6-30 (207)
350 3bh0_A DNAB-like replicative h 92.2 0.3 1E-05 53.8 8.7 69 177-254 50-118 (315)
351 3tqc_A Pantothenate kinase; bi 92.2 0.12 4.2E-06 56.9 5.3 47 176-222 70-117 (321)
352 3rfe_A Platelet glycoprotein I 92.2 0.2 6.7E-06 47.3 6.1 54 662-717 12-67 (130)
353 2wwf_A Thymidilate kinase, put 92.1 0.088 3E-06 54.1 3.9 28 197-224 10-37 (212)
354 2grj_A Dephospho-COA kinase; T 92.1 0.081 2.8E-06 53.8 3.6 27 195-221 10-36 (192)
355 2bbw_A Adenylate kinase 4, AK4 92.1 0.08 2.7E-06 56.1 3.7 26 197-222 27-52 (246)
356 3ney_A 55 kDa erythrocyte memb 92.1 0.069 2.4E-06 54.4 3.0 27 196-222 18-44 (197)
357 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.087 3E-06 56.4 4.0 26 197-222 4-29 (260)
358 1jjv_A Dephospho-COA kinase; P 92.1 0.078 2.7E-06 54.4 3.5 22 198-219 3-24 (206)
359 1g41_A Heat shock protein HSLU 92.0 0.1 3.6E-06 59.9 4.8 52 173-224 15-77 (444)
360 3umf_A Adenylate kinase; rossm 92.0 0.1 3.6E-06 54.0 4.2 27 195-221 27-53 (217)
361 4gp7_A Metallophosphoesterase; 91.9 0.07 2.4E-06 53.1 2.8 22 197-218 9-30 (171)
362 3p32_A Probable GTPase RV1496/ 91.9 0.26 8.9E-06 55.3 7.8 40 183-223 66-105 (355)
363 3io5_A Recombination and repai 91.8 0.28 9.7E-06 53.3 7.5 34 199-232 30-65 (333)
364 2zr9_A Protein RECA, recombina 91.8 0.23 7.9E-06 55.5 7.1 51 181-232 45-96 (349)
365 1aky_A Adenylate kinase; ATP:A 91.8 0.08 2.7E-06 55.0 3.2 26 197-222 4-29 (220)
366 1gvn_B Zeta; postsegregational 91.8 0.13 4.6E-06 55.8 5.1 27 195-221 31-57 (287)
367 4e22_A Cytidylate kinase; P-lo 91.8 0.081 2.8E-06 56.3 3.3 26 197-222 27-52 (252)
368 3nwj_A ATSK2; P loop, shikimat 91.7 0.075 2.6E-06 56.4 2.9 25 198-222 49-73 (250)
369 1gtv_A TMK, thymidylate kinase 91.7 0.062 2.1E-06 55.4 2.2 25 199-223 2-26 (214)
370 2z0h_A DTMP kinase, thymidylat 91.6 0.1 3.5E-06 52.9 3.7 25 199-223 2-26 (197)
371 3fb4_A Adenylate kinase; psych 91.6 0.1 3.4E-06 54.0 3.7 23 199-221 2-24 (216)
372 2pez_A Bifunctional 3'-phospho 91.5 0.11 3.9E-06 51.8 4.0 26 197-222 5-30 (179)
373 1pgv_A TMD-1, tropomodulin TMD 91.5 0.059 2E-06 54.7 1.8 87 658-747 41-137 (197)
374 1zd8_A GTP:AMP phosphotransfer 91.5 0.098 3.3E-06 54.6 3.5 25 197-221 7-31 (227)
375 1zak_A Adenylate kinase; ATP:A 91.5 0.082 2.8E-06 55.0 2.9 26 197-222 5-30 (222)
376 2p5t_B PEZT; postsegregational 91.5 0.13 4.6E-06 54.7 4.6 28 195-222 30-57 (253)
377 1fx0_B ATP synthase beta chain 91.4 0.32 1.1E-05 56.1 7.9 53 198-254 166-219 (498)
378 1lvg_A Guanylate kinase, GMP k 91.4 0.077 2.6E-06 54.2 2.5 25 198-222 5-29 (198)
379 1m7g_A Adenylylsulfate kinase; 91.3 0.12 4.2E-06 53.2 4.0 27 196-222 24-50 (211)
380 3cnl_A YLQF, putative uncharac 91.3 0.3 1E-05 52.2 7.1 47 40-94 11-57 (262)
381 3ake_A Cytidylate kinase; CMP 91.3 0.12 4E-06 52.9 3.8 24 199-222 4-27 (208)
382 3dl0_A Adenylate kinase; phosp 91.2 0.11 3.6E-06 53.8 3.3 23 199-221 2-24 (216)
383 2ck3_D ATP synthase subunit be 91.2 0.25 8.7E-06 56.7 6.7 53 198-254 154-207 (482)
384 3aez_A Pantothenate kinase; tr 91.2 0.12 4.2E-06 56.8 4.0 28 195-222 88-115 (312)
385 3k1j_A LON protease, ATP-depen 91.1 0.12 4E-06 62.7 4.1 51 170-225 38-88 (604)
386 3upu_A ATP-dependent DNA helic 91.1 0.63 2.2E-05 54.2 10.3 27 199-225 47-73 (459)
387 2f6r_A COA synthase, bifunctio 91.0 0.13 4.4E-06 55.8 3.9 25 195-219 73-97 (281)
388 2jeo_A Uridine-cytidine kinase 91.0 0.15 5E-06 54.0 4.3 27 195-221 23-49 (245)
389 4a74_A DNA repair and recombin 90.9 0.26 8.9E-06 51.2 6.1 37 196-232 24-66 (231)
390 1znw_A Guanylate kinase, GMP k 90.9 0.12 4.1E-06 53.1 3.4 26 197-222 20-45 (207)
391 3d3q_A TRNA delta(2)-isopenten 90.9 0.13 4.3E-06 57.0 3.7 25 198-222 8-32 (340)
392 1u94_A RECA protein, recombina 90.9 0.29 9.8E-06 54.8 6.7 55 177-232 43-98 (356)
393 3be4_A Adenylate kinase; malar 90.8 0.14 4.8E-06 53.0 3.8 24 198-221 6-29 (217)
394 1vht_A Dephospho-COA kinase; s 90.8 0.15 5E-06 52.9 4.0 23 197-219 4-26 (218)
395 1sq5_A Pantothenate kinase; P- 90.7 0.21 7.3E-06 54.8 5.3 28 195-222 78-105 (308)
396 1e4v_A Adenylate kinase; trans 90.6 0.15 5.2E-06 52.6 3.9 23 199-221 2-24 (214)
397 2v54_A DTMP kinase, thymidylat 90.6 0.13 4.3E-06 52.5 3.3 24 198-221 5-28 (204)
398 3r20_A Cytidylate kinase; stru 90.6 0.14 4.7E-06 53.7 3.5 26 197-222 9-34 (233)
399 3l0o_A Transcription terminati 90.5 0.4 1.4E-05 53.5 7.2 26 198-223 176-201 (427)
400 1z6g_A Guanylate kinase; struc 90.5 0.12 4E-06 53.8 2.8 25 197-221 23-47 (218)
401 1mky_A Probable GTP-binding pr 90.5 2.2 7.5E-05 49.2 14.0 25 196-220 179-203 (439)
402 1htw_A HI0065; nucleotide-bind 90.4 0.16 5.5E-06 49.7 3.7 26 196-221 32-57 (158)
403 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.2 6.7E-06 52.1 4.6 36 197-232 23-58 (235)
404 1np6_A Molybdopterin-guanine d 90.4 0.23 7.8E-06 49.5 4.8 27 197-223 6-32 (174)
405 2xb4_A Adenylate kinase; ATP-b 90.4 0.15 5.2E-06 53.0 3.7 23 199-221 2-24 (223)
406 3ec1_A YQEH GTPase; atnos1, at 90.4 0.86 2.9E-05 51.3 10.2 125 40-220 61-185 (369)
407 4a1f_A DNAB helicase, replicat 90.3 0.52 1.8E-05 52.2 8.0 72 175-255 26-97 (338)
408 1ak2_A Adenylate kinase isoenz 90.3 0.15 5E-06 53.5 3.5 26 197-222 16-41 (233)
409 2i3b_A HCR-ntpase, human cance 90.2 0.14 4.8E-06 51.8 3.1 24 199-222 3-26 (189)
410 3e1s_A Exodeoxyribonuclease V, 90.2 0.63 2.1E-05 55.7 9.2 27 198-224 205-231 (574)
411 2f1r_A Molybdopterin-guanine d 90.2 0.1 3.6E-06 51.9 2.0 26 198-223 3-28 (171)
412 2ehv_A Hypothetical protein PH 90.2 0.21 7.2E-06 52.6 4.6 36 197-232 30-66 (251)
413 2yv5_A YJEQ protein; hydrolase 90.1 1.5 5.2E-05 47.7 11.7 21 198-218 166-186 (302)
414 2dr3_A UPF0273 protein PH0284; 90.1 0.26 8.7E-06 51.8 5.2 36 197-232 23-58 (247)
415 1n0w_A DNA repair protein RAD5 90.0 0.27 9.1E-06 51.6 5.2 36 197-232 24-65 (243)
416 3crm_A TRNA delta(2)-isopenten 89.8 0.17 5.8E-06 55.6 3.6 24 198-221 6-29 (323)
417 1s96_A Guanylate kinase, GMP k 89.8 0.17 5.8E-06 52.6 3.4 26 197-222 16-41 (219)
418 2q6t_A DNAB replication FORK h 89.8 0.9 3.1E-05 52.6 9.9 69 177-254 182-251 (444)
419 1svm_A Large T antigen; AAA+ f 89.7 0.24 8.3E-06 55.8 4.9 28 195-222 167-194 (377)
420 1yrb_A ATP(GTP)binding protein 89.7 0.32 1.1E-05 51.7 5.7 28 195-222 12-39 (262)
421 1cp2_A CP2, nitrogenase iron p 89.7 0.33 1.1E-05 52.0 5.7 27 198-224 2-28 (269)
422 3end_A Light-independent proto 89.6 0.3 1E-05 53.5 5.5 30 195-224 39-68 (307)
423 3cmw_A Protein RECA, recombina 89.5 0.53 1.8E-05 62.6 8.4 84 195-288 1429-1519(1706)
424 1t9h_A YLOQ, probable GTPase E 89.4 0.65 2.2E-05 50.7 7.8 47 46-94 82-128 (307)
425 3a8t_A Adenylate isopentenyltr 89.4 0.13 4.5E-06 56.6 2.3 25 197-221 40-64 (339)
426 2r6a_A DNAB helicase, replicat 89.4 1.4 4.7E-05 51.1 11.2 51 196-253 202-253 (454)
427 1cr0_A DNA primase/helicase; R 89.3 0.32 1.1E-05 53.0 5.2 36 197-232 35-71 (296)
428 3sr0_A Adenylate kinase; phosp 89.2 0.22 7.6E-06 51.1 3.7 23 199-221 2-24 (206)
429 2ged_A SR-beta, signal recogni 89.2 0.25 8.4E-06 49.7 4.0 26 195-220 46-71 (193)
430 1a7j_A Phosphoribulokinase; tr 89.0 0.13 4.4E-06 56.0 1.9 27 196-222 4-30 (290)
431 3vr4_D V-type sodium ATPase su 89.0 0.23 7.8E-06 56.8 3.9 88 199-290 153-260 (465)
432 1ls1_A Signal recognition part 89.0 0.34 1.2E-05 52.7 5.3 29 196-224 97-125 (295)
433 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.7E-06 53.7 2.0 25 197-221 27-52 (231)
434 3exa_A TRNA delta(2)-isopenten 89.0 0.21 7.2E-06 54.4 3.4 25 197-221 3-27 (322)
435 2afh_E Nitrogenase iron protei 88.9 0.39 1.3E-05 52.1 5.6 28 197-224 2-29 (289)
436 3bgw_A DNAB-like replicative h 88.9 0.81 2.8E-05 52.9 8.6 69 177-254 179-247 (444)
437 1ltq_A Polynucleotide kinase; 88.8 0.23 8E-06 54.2 3.8 23 198-220 3-25 (301)
438 1xp8_A RECA protein, recombina 88.8 0.65 2.2E-05 52.1 7.5 54 178-232 55-109 (366)
439 2pcj_A ABC transporter, lipopr 88.8 0.19 6.5E-06 52.4 2.9 24 197-220 30-53 (224)
440 1nlf_A Regulatory protein REPA 88.8 0.38 1.3E-05 51.8 5.5 27 197-223 30-56 (279)
441 2rcn_A Probable GTPase ENGC; Y 88.7 1.3 4.4E-05 49.4 9.7 23 198-220 216-238 (358)
442 2onk_A Molybdate/tungstate ABC 88.7 0.22 7.4E-06 52.6 3.2 25 195-220 23-47 (240)
443 3b85_A Phosphate starvation-in 88.6 0.18 6.3E-06 51.8 2.6 23 198-220 23-45 (208)
444 1q3t_A Cytidylate kinase; nucl 88.6 0.25 8.6E-06 51.8 3.7 28 195-222 14-41 (236)
445 3tif_A Uncharacterized ABC tra 88.5 0.19 6.6E-06 52.8 2.7 24 197-220 31-54 (235)
446 4eaq_A DTMP kinase, thymidylat 88.3 0.3 1E-05 51.1 4.0 28 196-223 25-52 (229)
447 1ypw_A Transitional endoplasmi 88.3 0.24 8.3E-06 61.9 3.9 56 170-225 474-539 (806)
448 2p67_A LAO/AO transport system 88.1 0.69 2.3E-05 51.5 7.1 29 195-223 54-82 (341)
449 2ocp_A DGK, deoxyguanosine kin 88.1 0.29 1E-05 51.5 3.8 26 197-222 2-27 (241)
450 4hlc_A DTMP kinase, thymidylat 88.0 0.45 1.5E-05 48.7 5.1 30 198-227 3-32 (205)
451 2r8r_A Sensor protein; KDPD, P 88.0 0.42 1.4E-05 49.4 4.8 30 198-227 7-37 (228)
452 3foz_A TRNA delta(2)-isopenten 88.0 0.3 1E-05 53.0 3.8 26 196-221 9-34 (316)
453 2cbz_A Multidrug resistance-as 87.9 0.22 7.5E-06 52.4 2.7 24 197-220 31-54 (237)
454 1g8f_A Sulfate adenylyltransfe 87.9 0.4 1.4E-05 56.1 5.2 46 177-223 376-421 (511)
455 2d2e_A SUFC protein; ABC-ATPas 87.9 0.26 8.8E-06 52.3 3.2 24 197-220 29-52 (250)
456 2hjg_A GTP-binding protein ENG 87.8 3 0.0001 48.0 12.6 26 195-220 173-198 (436)
457 1oix_A RAS-related protein RAB 87.8 0.3 1E-05 49.2 3.7 25 196-220 28-52 (191)
458 3h2y_A GTPase family protein; 87.7 1.8 6.2E-05 48.6 10.3 43 173-221 142-184 (368)
459 3gfo_A Cobalt import ATP-bindi 87.7 0.23 7.9E-06 53.5 2.7 23 198-220 35-57 (275)
460 1b0u_A Histidine permease; ABC 87.7 0.23 7.9E-06 53.1 2.7 25 196-220 31-55 (262)
461 2zu0_C Probable ATP-dependent 87.6 0.27 9.4E-06 52.7 3.2 24 197-220 46-69 (267)
462 3fdi_A Uncharacterized protein 87.5 0.33 1.1E-05 49.6 3.7 25 198-222 7-31 (201)
463 1ji0_A ABC transporter; ATP bi 87.5 0.24 8.3E-06 52.2 2.7 24 197-220 32-55 (240)
464 2dyk_A GTP-binding protein; GT 87.4 0.35 1.2E-05 46.7 3.7 23 198-220 2-24 (161)
465 4g1u_C Hemin import ATP-bindin 87.4 0.24 8.3E-06 53.0 2.7 24 197-220 37-60 (266)
466 1u0j_A DNA replication protein 87.4 0.46 1.6E-05 50.5 4.8 38 183-221 91-128 (267)
467 3eph_A TRNA isopentenyltransfe 87.3 0.36 1.2E-05 54.5 4.1 25 198-222 3-27 (409)
468 1g6h_A High-affinity branched- 87.3 0.25 8.6E-06 52.7 2.7 24 197-220 33-56 (257)
469 2olj_A Amino acid ABC transpor 87.3 0.25 8.6E-06 52.8 2.7 24 197-220 50-73 (263)
470 1sgw_A Putative ABC transporte 87.2 0.22 7.5E-06 51.5 2.1 23 198-220 36-58 (214)
471 2pze_A Cystic fibrosis transme 87.2 0.26 8.9E-06 51.5 2.7 25 197-221 34-58 (229)
472 2ck3_A ATP synthase subunit al 87.2 0.37 1.3E-05 55.8 4.2 87 198-290 163-274 (510)
473 3gmt_A Adenylate kinase; ssgci 87.2 0.33 1.1E-05 50.5 3.5 24 198-221 9-32 (230)
474 4dzz_A Plasmid partitioning pr 87.1 0.5 1.7E-05 48.0 4.8 35 198-232 2-37 (206)
475 2ff7_A Alpha-hemolysin translo 87.1 0.26 8.9E-06 52.2 2.7 24 197-220 35-58 (247)
476 2v9p_A Replication protein E1; 87.1 0.31 1.1E-05 53.1 3.4 26 196-221 125-150 (305)
477 1mv5_A LMRA, multidrug resista 87.1 0.28 9.6E-06 51.8 3.0 25 196-220 27-51 (243)
478 1u0l_A Probable GTPase ENGC; p 87.0 3.2 0.00011 45.0 11.6 23 198-220 170-192 (301)
479 1vpl_A ABC transporter, ATP-bi 87.0 0.27 9.2E-06 52.4 2.7 24 197-220 41-64 (256)
480 2f9l_A RAB11B, member RAS onco 86.9 0.32 1.1E-05 49.3 3.1 24 197-220 5-28 (199)
481 1v5w_A DMC1, meiotic recombina 86.9 1.6 5.4E-05 48.5 9.1 48 184-232 110-163 (343)
482 2ghi_A Transport protein; mult 86.8 0.28 9.5E-06 52.4 2.7 33 197-231 46-78 (260)
483 2wji_A Ferrous iron transport 86.8 0.37 1.3E-05 47.1 3.5 22 198-219 4-25 (165)
484 1tq4_A IIGP1, interferon-induc 86.7 0.37 1.3E-05 54.9 3.9 35 184-219 57-91 (413)
485 2z43_A DNA repair and recombin 86.7 1 3.5E-05 49.7 7.4 36 197-232 107-148 (324)
486 2ixe_A Antigen peptide transpo 86.7 0.28 9.7E-06 52.7 2.7 24 197-220 45-68 (271)
487 2qi9_C Vitamin B12 import ATP- 86.7 0.29 9.8E-06 51.9 2.7 32 198-231 27-58 (249)
488 1pzn_A RAD51, DNA repair and r 86.6 0.65 2.2E-05 51.9 5.8 27 195-221 129-155 (349)
489 2qmh_A HPR kinase/phosphorylas 86.6 0.3 1E-05 49.4 2.6 23 198-220 35-57 (205)
490 2r9v_A ATP synthase subunit al 86.6 0.4 1.4E-05 55.4 4.0 85 198-290 176-279 (515)
491 3sop_A Neuronal-specific septi 86.6 0.37 1.3E-05 51.8 3.6 23 199-221 4-26 (270)
492 2yz2_A Putative ABC transporte 86.5 0.29 1E-05 52.4 2.7 24 197-220 33-56 (266)
493 2qm8_A GTPase/ATPase; G protei 86.5 0.96 3.3E-05 50.2 7.0 28 195-222 53-80 (337)
494 3zvl_A Bifunctional polynucleo 86.5 0.26 9E-06 56.6 2.5 27 195-221 256-282 (416)
495 2axn_A 6-phosphofructo-2-kinas 86.4 0.6 2.1E-05 55.1 5.6 31 195-225 33-63 (520)
496 2nq2_C Hypothetical ABC transp 86.3 0.3 1E-05 51.9 2.7 23 198-220 32-54 (253)
497 2ihy_A ABC transporter, ATP-bi 86.3 0.3 1E-05 52.7 2.7 34 197-231 47-80 (279)
498 2h92_A Cytidylate kinase; ross 86.3 0.31 1.1E-05 50.3 2.7 24 198-221 4-27 (219)
499 3cr8_A Sulfate adenylyltranfer 86.2 0.56 1.9E-05 55.7 5.2 27 197-223 369-395 (552)
500 2ce2_X GTPase HRAS; signaling 86.2 0.4 1.4E-05 46.3 3.3 22 199-220 5-26 (166)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.9e-49 Score=390.72 Aligned_cols=163 Identities=41% Similarity=0.740 Sum_probs=140.3
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
|||||+|||++|++|||++|+++||+||+|++++++|+.|.++|.+||++|+++|||||+|||+|+|||+||++|++|++
T Consensus 13 iSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 13 LSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp EEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred EECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 69999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeEEeeeccccccccccccchHHHHHHHhhcCChhHHHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHhh
Q 047103 81 ANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMVQKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLK 160 (1095)
Q Consensus 81 ~~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~~~~~~~w~~aL~~va~~~g~~~~~~~~e~~~i~~iv~~v~~ 160 (1095)
++|++|+||||+|+|++||+|+|+||+||++|+++ +.++++++||+||++||+++|| ++ ..+|+++|++||++|++
T Consensus 93 ~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~-~~-~~~e~~~i~~Iv~~v~~ 168 (176)
T 3jrn_A 93 KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGD-CS-GDDDSKLVDKIANEISN 168 (176)
T ss_dssp TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCE-EC-CSCHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccce-ec-CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 6789999999999999999999 77 46899999999999999
Q ss_pred ccccccccc
Q 047103 161 NLEKITIST 169 (1095)
Q Consensus 161 ~l~~~~~~~ 169 (1095)
+| +.+++
T Consensus 169 ~l--~~~~~ 175 (176)
T 3jrn_A 169 KK--TIYAT 175 (176)
T ss_dssp TC--C----
T ss_pred Hh--cCCCC
Confidence 99 55543
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.5e-47 Score=385.66 Aligned_cols=159 Identities=41% Similarity=0.726 Sum_probs=152.3
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
|||||+|||++|++|||.+|+++||+||+|++++++|+.|.++|.+||++|+++|||||+|||+|.|||+||++||+|++
T Consensus 40 ISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~ 119 (204)
T 3ozi_A 40 LSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQE 119 (204)
T ss_dssp EEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999998899999999999999999999999999999999999999999999987
Q ss_pred c-CCCeEEeEEeeeccccccccccccchHHHHHHHhhcCChhHHHHHHHHHHHhhhccCCCCCCCC-ChHHHHHHHHHHH
Q 047103 81 A-NDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREKPEMVQKWRDELTETSHLAGHESTKFR-NDALLIDKIVEDV 158 (1095)
Q Consensus 81 ~-~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~~~~~~~w~~aL~~va~~~g~~~~~~~-~e~~~i~~iv~~v 158 (1095)
+ ++++|+||||+|+|++||+|+|+||+||++|++++ ..+++++||+||++||+++|| +++++ +|+++|++||++|
T Consensus 120 ~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~-~~~~~~~e~~~i~~Iv~di 196 (204)
T 3ozi_A 120 EDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGW-HIGKNDKQGAIADKVSADI 196 (204)
T ss_dssp HCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBE-EECTTSCHHHHHHHHHHHH
T ss_pred hcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCce-ecCCCCCHHHHHHHHHHHH
Confidence 5 68999999999999999999999999999999876 468999999999999999999 88876 6889999999999
Q ss_pred hhcc
Q 047103 159 LKNL 162 (1095)
Q Consensus 159 ~~~l 162 (1095)
+++|
T Consensus 197 ~~kl 200 (204)
T 3ozi_A 197 WSHI 200 (204)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9998
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-40 Score=401.72 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=224.6
Q ss_pred ccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHH----HHhcCCCceEEEEecccccCCCCCHHHHHHHH
Q 047103 176 VGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFN----QFSGGFEGTCFVADVRRNSGTGGGLEHLQKQI 251 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~----~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~l 251 (1095)
|||+.++++|.++|....+..+++|+|||||||||||||+++|+ +++.+|+.++|+. +++... +++..+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 59999999999999776435789999999999999999999997 6889999999995 443221 4688999999
Q ss_pred HHHhcCCCc--cc-cCCC-----chHHHHhhhcCC-eEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhc
Q 047103 252 LSTILSEKL--EV-AGPN-----IPQFTKGRFRCM-KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKF 322 (1095)
Q Consensus 252 l~~l~~~~~--~~-~~~~-----~~~~l~~~L~~k-r~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 322 (1095)
+.+++.... .. .... +...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999875422 11 1111 256789999996 999999999999876 3321 2799999999999999887
Q ss_pred C-cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc-------------
Q 047103 323 G-VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH------------- 388 (1095)
Q Consensus 323 ~-~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~------------- 388 (1095)
+ ...+|+|++|+.+|||+||.++||+... ++.+.+++++|+++|+|+||||+++|+.|+.+....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL 360 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccH
Confidence 6 4578999999999999999999987643 467889999999999999999999999987652100
Q ss_pred ---------ccCCCCHHHHHHhh-----------hhhcccCCCCHHHHHHHhhc-cC---------CC-----ccceecc
Q 047103 389 ---------CFNDLTFEAKNIFL-----------DIACFFEGEDKDFVMRVLDD-FV---------SP-----ELDVLID 433 (1095)
Q Consensus 389 ---------sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~v~~~l~~-~~---------~~-----~l~~L~~ 433 (1095)
||+.||.+.|.||+ |||+||+++.++ +..|.+. .| .. .+++|++
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~ 439 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHTTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee-eeeeeeeccceeccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999 999999999887 4444332 01 01 2999999
Q ss_pred CCceeEe----CCEEEeeHHHHHHHHHHHhhccc
Q 047103 434 KSLVTIL----DNRLQMHDLLQEMGREIVRKESN 463 (1095)
Q Consensus 434 ~sLi~~~----~~~~~mHdll~~~~~~i~~~e~~ 463 (1095)
+||++.. ..+|+|||++|++|++++++++.
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred cCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999986 24799999999999999887764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=4e-33 Score=373.39 Aligned_cols=280 Identities=21% Similarity=0.266 Sum_probs=215.9
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHH---HhcCCCceE-EEEecccccCCCCC
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQ---FSGGFEGTC-FVADVRRNSGTGGG 243 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~---~~~~F~~~~-~v~~v~~~~~~~~~ 243 (1095)
.|.....||||++++++|.++|.... +.+++|+|+||||+||||||+++|++ ...+|...+ |+. +..... ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDK--SG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCH--HH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCc--hH
Confidence 45566789999999999999997655 67899999999999999999999986 456676555 664 433111 23
Q ss_pred HHHHHHHHHHHhcCCCccc-----cCCCchHHHHhhhcCC--eEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 244 LEHLQKQILSTILSEKLEV-----AGPNIPQFTKGRFRCM--KVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 244 l~~l~~~ll~~l~~~~~~~-----~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
+....+.++..+....... ....+.+.++..+.++ |+||||||||+..+|+.+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 3444556666665433221 1112234455566655 999999999999887764 6899999999999
Q ss_pred HHHHh-cCcceEEEccC-CChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc------
Q 047103 317 RVLEK-FGVKKIYRVNG-LQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH------ 388 (1095)
Q Consensus 317 ~v~~~-~~~~~~~~v~~-L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~------ 388 (1095)
.++.. ++....++++. |+.+||++||..+++.. .+.+.+++++|+++|+|+||||+++|++|+.+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~ 344 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQ 344 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHH
Confidence 99854 46668899996 99999999999988532 345567899999999999999999999998644210
Q ss_pred --------------------------ccCCCCHHHHHHhhhhhcccCCCCH--HHHHHHhhccC-CCc--cceeccCCce
Q 047103 389 --------------------------CFNDLTFEAKNIFLDIACFFEGEDK--DFVMRVLDDFV-SPE--LDVLIDKSLV 437 (1095)
Q Consensus 389 --------------------------sy~~L~~~~k~~fl~~a~f~~~~~~--~~v~~~l~~~~-~~~--l~~L~~~sLi 437 (1095)
||+.|++++|.||++||+||.++.+ +.+..+|...+ .++ +++|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 8999999999999999999998754 55666665433 222 9999999999
Q ss_pred eEe-CC---EEEeeHHHHHHHHHHHhhc
Q 047103 438 TIL-DN---RLQMHDLLQEMGREIVRKE 461 (1095)
Q Consensus 438 ~~~-~~---~~~mHdll~~~~~~i~~~e 461 (1095)
+.. ++ +|+|||++|+++++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 44 4999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=5.5e-32 Score=331.11 Aligned_cols=259 Identities=16% Similarity=0.148 Sum_probs=197.1
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHH--HHhcCCCc-eEEEEecccccCCCCCHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFN--QFSGGFEG-TCFVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~--~~~~~F~~-~~~v~~v~~~~~~~~~l~~l~~ 249 (1095)
+..|||++++++|.++|... +.+++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++.. ++...+..
T Consensus 128 k~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~----~d~~~IL~ 200 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNC----NSPETVLE 200 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCS----SSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCC----CCHHHHHH
Confidence 44599999999999999753 3489999999999999999999997 47889997 67775 4332 45666666
Q ss_pred HHHHHhcCCC---c-cc--------cCCCchHHHHhhh---cCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeC
Q 047103 250 QILSTILSEK---L-EV--------AGPNIPQFTKGRF---RCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTR 314 (1095)
Q Consensus 250 ~ll~~l~~~~---~-~~--------~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR 314 (1095)
.++..+.... . .. ....+...+++.| .+||+||||||||+.++|+.+. +|||||||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTR 273 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECS
T ss_pred HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEecc
Confidence 6665432111 0 00 0111233455555 6799999999999999998762 7899999999
Q ss_pred chHHHHhcCcceEEEcc------CCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccccccccc
Q 047103 315 DKRVLEKFGVKKIYRVN------GLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKTH 388 (1095)
Q Consensus 315 ~~~v~~~~~~~~~~~v~------~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~ 388 (1095)
++.++..++....|+|+ .|+.+||++||+++ ++.. ..++..++ |+|+||||+++|+.|+++....
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 99998755444467777 99999999999998 4332 22334444 9999999999999998873110
Q ss_pred -----------------ccCCCCHHH-HHHhhhhhcccCCCCH--HHHHHHhhccC--CCc--cceeccCCceeEe--CC
Q 047103 389 -----------------CFNDLTFEA-KNIFLDIACFFEGEDK--DFVMRVLDDFV--SPE--LDVLIDKSLVTIL--DN 442 (1095)
Q Consensus 389 -----------------sy~~L~~~~-k~~fl~~a~f~~~~~~--~~v~~~l~~~~--~~~--l~~L~~~sLi~~~--~~ 442 (1095)
||+.|++++ |+||+++|+||++..+ +.+..+|...+ .++ +++|+++|||+.. .+
T Consensus 345 eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~ 424 (1221)
T 1vt4_I 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424 (1221)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSS
T ss_pred HHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCC
Confidence 999999999 9999999999998765 45677776654 222 9999999999986 56
Q ss_pred EEEeeHHHHHHH
Q 047103 443 RLQMHDLLQEMG 454 (1095)
Q Consensus 443 ~~~mHdll~~~~ 454 (1095)
+|+|||++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 899999998855
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=7.5e-30 Score=314.14 Aligned_cols=272 Identities=21% Similarity=0.242 Sum_probs=202.4
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH---hcCCC-ceEEEEecccccCCCCC
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF---SGGFE-GTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~---~~~F~-~~~~v~~v~~~~~~~~~ 243 (1095)
.|.....+|||+.++++|.++|.... +..++|+|+||||+||||||+++|++. ..+|+ .++|+. +... +
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~ 191 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----D 191 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----C
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----c
Confidence 34556789999999999999997654 568999999999999999999999854 77895 677776 3321 2
Q ss_pred HHHHHHH---HHHHhcCCCc--cccC---CCchHHHHhhhcC--CeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEe
Q 047103 244 LEHLQKQ---ILSTILSEKL--EVAG---PNIPQFTKGRFRC--MKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITT 313 (1095)
Q Consensus 244 l~~l~~~---ll~~l~~~~~--~~~~---~~~~~~l~~~L~~--kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTT 313 (1095)
...+... +...++.... .... ......++..+.+ +++||||||||+..+++.+ ++|++|||||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTs 264 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEEC
Confidence 2223322 3334442111 1111 1223445666655 7899999999998877643 6789999999
Q ss_pred CchHHHHhcCcceEEEc---cCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeecccccccccc---
Q 047103 314 RDKRVLEKFGVKKIYRV---NGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLYQKSKT--- 387 (1095)
Q Consensus 314 R~~~v~~~~~~~~~~~v---~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~--- 387 (1095)
|++.++..++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.|+.+...
T Consensus 265 R~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~ 340 (591)
T 1z6t_A 265 RDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY 340 (591)
T ss_dssp SCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHH
T ss_pred CCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHH
Confidence 9999876653 355666 4899999999999998642 23345678899999999999999999998765420
Q ss_pred ----------------------c-------ccCCCCHHHHHHhhhhhcccCCCCH--HHHHHHhhccC-CC--ccceecc
Q 047103 388 ----------------------H-------CFNDLTFEAKNIFLDIACFFEGEDK--DFVMRVLDDFV-SP--ELDVLID 433 (1095)
Q Consensus 388 ----------------------~-------sy~~L~~~~k~~fl~~a~f~~~~~~--~~v~~~l~~~~-~~--~l~~L~~ 433 (1095)
. ||+.||+..|.||+++|+||.+..+ +.+..+|.... .. .++.|++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHh
Confidence 0 8999999999999999999987654 45666664332 22 2999999
Q ss_pred CCceeEe--C--CEEEeeHHHHHHHHHH
Q 047103 434 KSLVTIL--D--NRLQMHDLLQEMGREI 457 (1095)
Q Consensus 434 ~sLi~~~--~--~~~~mHdll~~~~~~i 457 (1095)
+|||+.. + .+|.||+++++++++.
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999876 2 2799999999999876
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.1e-28 Score=310.16 Aligned_cols=334 Identities=22% Similarity=0.246 Sum_probs=204.4
Q ss_pred ecccCCCccccccccccccCCccceeeecCCccc-ccccCCcceecCCCCCCCCCCcceEEcccCCCC-----CCCCCC-
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFT-FIPIASSKVHLDQGLDYLPKELRYLHWHQYPLK-----NEDKAP- 567 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~-~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-----~l~~l~- 567 (1095)
.++++.+......+..|.++++|+.|++++|.++ .+|.. .+..++ .|++|++++|.+. .+..++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~--------~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD--------TLLKMR-GLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH--------HHTTCT-TCCEEECCSSEEEECCCTTHHHHTT
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH--------HHhcCC-CCCEEeCcCCccCccccHHHHhhhc
Confidence 3566666666566777777888888888877765 33321 012222 5666666665443 112333
Q ss_pred cceeecccCCCCccccCC-CCC--CccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-ee
Q 047103 568 KLKYIDLNHSSNLTRIPE-PSE--TPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-IN 643 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~~--l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~ 643 (1095)
+|++|+|++|.+...+|. +.. +++|++|+|++|...+.+|..+.++++|++|+|++|...+.+|..+..+++|+ +.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 566666666655544443 333 55566666666655555565666666666666666555555555555566666 55
Q ss_pred ccCCcccCCCcccc---CCceEEEecCCCCc-cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccc
Q 047103 644 CSECVNLSEFPRIS---GNVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 644 l~~c~~L~~~p~~~---~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~ 719 (1095)
+.+|.....+|..+ .+|+.|++++|.++ .+|..+..+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 55554444444332 34556666666655 455555666666666666666555666666666666666666655544
Q ss_pred cccccccccCccccCCCCCCEEEecCCCCCCCCCc---------------------------------------------
Q 047103 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPE--------------------------------------------- 754 (1095)
Q Consensus 720 ~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~--------------------------------------------- 754 (1095)
.+|..++++++|+.|+|++|.+.+.+|.
T Consensus 529 -------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 529 -------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp -------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred -------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 3344455556666666665555544443
Q ss_pred -------------------------ccCCCccccccccCCC---cccCcccCCCCCCCeeeCCCCCCc-ccCcccCCCCC
Q 047103 755 -------------------------SLGNLKALEFLSAAGI---IKIPRDIGCLSSLVELDLSRNNFE-SLPSGISHLSR 805 (1095)
Q Consensus 755 -------------------------~l~~L~~L~~L~l~~~---~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~L~~ 805 (1095)
.+..+++|+.|++++. +.+|..++.+++|+.|+|++|+++ .+|..++++++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 3444566777766653 357888888888888888888888 78888888888
Q ss_pred CCEEeccCCCCcccCCCCCC---CccceeecccCccCcccCCC
Q 047103 806 LKWLHLFDCIMLQSSLPELP---PHLVMLDARNCKRLQSLPEL 845 (1095)
Q Consensus 806 L~~L~L~~c~~l~~~lp~l~---~sL~~L~l~~c~~L~~lp~~ 845 (1095)
|+.|+|++|+.... +|... ++|+.|++++|+..+.+|..
T Consensus 682 L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 682 LNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCEEECCSSCCEEC-CCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCEEECCCCcccCc-CChHHhCCCCCCEEECcCCcccccCCCc
Confidence 88888888876655 66532 67888888888877777754
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.5e-28 Score=306.30 Aligned_cols=334 Identities=21% Similarity=0.224 Sum_probs=185.2
Q ss_pred cccCCCccc-cccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCC--CC
Q 047103 496 LDLSNKTDI-HLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDK--AP 567 (1095)
Q Consensus 496 ldls~~~~~-~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~--l~ 567 (1095)
++++.+... .++...|.++++|+.|++++|.++. .++..+..++..|+.|++++|.+.. +.. ++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~--------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE--------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc--------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 344444443 3444446666666666666665431 1222333333456666666554321 111 45
Q ss_pred cceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eecc
Q 047103 568 KLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCS 645 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~ 645 (1095)
+|++|+|++|.+...+|. +..+++|++|+|++|...+.+|..++.+++|++|+|++|...+.+|..+..+++|+ +.+.
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 566666666655555553 55666666666666665556666666666666666666655556666666666666 5555
Q ss_pred CCcccCCCcccc---CCceEEEecCCCCc-cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccc
Q 047103 646 ECVNLSEFPRIS---GNVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKE 721 (1095)
Q Consensus 646 ~c~~L~~~p~~~---~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~ 721 (1095)
+|.....+|..+ .+|+.|+|++|.++ .+|.+++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 554444444332 34566666666665 55666666666666666666666666666666666666666666665554
Q ss_pred cccccc---------------------------------------------------------------cCccccCCCCC
Q 047103 722 ASNIKE---------------------------------------------------------------LPSSIENLEGL 738 (1095)
Q Consensus 722 ~~~i~~---------------------------------------------------------------lp~~l~~l~~L 738 (1095)
|..+.. +|..+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 432211 22334445566
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCCC---cccCcccCCCCCCCeeeCCCCCCc-ccCcccCCCCCCCEEeccCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAGI---IKIPRDIGCLSSLVELDLSRNNFE-SLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~---~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~L~~L~~L~L~~c 814 (1095)
+.|+|++|.+.+.+|..++++++|+.|++++. +.+|..++.+++|+.|+|++|+++ .+|..+..+++|++|+|++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 66666666666666666666666666655442 245666666666666666666666 55666666666666666666
Q ss_pred CCcccCCCCC--CCccceeecccCcc
Q 047103 815 IMLQSSLPEL--PPHLVMLDARNCKR 838 (1095)
Q Consensus 815 ~~l~~~lp~l--~~sL~~L~l~~c~~ 838 (1095)
+.... +|.. +.++..+...+|+.
T Consensus 715 ~l~g~-iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 715 NLSGP-IPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp EEEEE-CCSSSSGGGSCGGGGCSCTE
T ss_pred ccccc-CCCchhhccCCHHHhcCCch
Confidence 54444 5542 23333334444443
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=7.4e-27 Score=294.51 Aligned_cols=345 Identities=17% Similarity=0.228 Sum_probs=230.4
Q ss_pred eeecccCCCccccccccccccCCccceeee-cCCccccc-ccCC------------------------------------
Q 047103 493 GIFLDLSNKTDIHLTCGAFKNMPNLRLLKF-YVPKFTFI-PIAS------------------------------------ 534 (1095)
Q Consensus 493 ~i~ldls~~~~~~i~~~~f~~m~~Lr~L~l-~~n~l~~i-~~~~------------------------------------ 534 (1095)
-..++++.+......+.+|.++++|+.|+| ++|.+... +...
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 445677877766666789999999999999 77765322 0000
Q ss_pred -------------------------------cceecCCCCCCCCCCcceEEcccCCCCC------------------C--
Q 047103 535 -------------------------------SKVHLDQGLDYLPKELRYLHWHQYPLKN------------------E-- 563 (1095)
Q Consensus 535 -------------------------------~~~~~~~~l~~l~~~Lr~L~l~~~~l~~------------------l-- 563 (1095)
....+|..+..++ +|++|++++|.+.. +
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 0000344455554 78889998888777 2
Q ss_pred ----CCCCcceeecccCCCCccccCC-CCCCccccEeeccCCc-cCc-cccccccCCC-------CcceEeccCCCCCcc
Q 047103 564 ----DKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCT-GLA-LIPSYIQNFN-------NLGNLSLEGCESLRC 629 (1095)
Q Consensus 564 ----~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~-~l~-~lp~~i~~L~-------~L~~L~L~~c~~l~~ 629 (1095)
..+++|++|+|++|.+...+|. +.++++|++|+|++|. ..+ .+|..++.++ +|++|+|++|... .
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c
Confidence 3788899999998888888875 7888899999998887 555 6777666555 8888888887655 7
Q ss_pred cCC--cccccccce-eeccCCcccCCCccc--cCCceEEEecCCCCccccCccCCCCC-CcEEeccCCCCCCccccccCC
Q 047103 630 FPQ--NIHFVSSIK-INCSECVNLSEFPRI--SGNVVELKLRHTPIEEVPSSIDCLPD-LETLEMSNCYSLKSLSTNICK 703 (1095)
Q Consensus 630 lp~--~i~~l~~L~-l~l~~c~~L~~~p~~--~~~L~~L~L~~n~i~~lp~~i~~l~~-L~~L~Ls~~~~l~~lp~~l~~ 703 (1095)
+|. .+..+++|+ +.++++. +..+|.+ +.+|+.|+|++|.++.+|..+..+++ |+.|+|++|.+. .+|..+..
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred cCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 888 788888888 7777664 4477722 24678888888888888888888888 888888888765 77877766
Q ss_pred CCC--CCEEEccCccccccccc---------------------cccccCcccc-CCCCCCEEEecCCCCCCCCCcccCC-
Q 047103 704 LKS--LRSLHLAFCEQLGKEAS---------------------NIKELPSSIE-NLEGLRELQLMGCTKLGSLPESLGN- 758 (1095)
Q Consensus 704 L~~--L~~L~Ls~~~~~~~~~~---------------------~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~- 758 (1095)
++. |+.|+|++|.+.+..|. .+..+|..+. .+++|+.|+|++|.+. .+|..+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~ 719 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence 654 88888888887664331 1223444333 5566666666666555 44443222
Q ss_pred -------CccccccccCC--CcccCcccC--CCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCC------CCcccCC
Q 047103 759 -------LKALEFLSAAG--IIKIPRDIG--CLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDC------IMLQSSL 821 (1095)
Q Consensus 759 -------L~~L~~L~l~~--~~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c------~~l~~~l 821 (1095)
+++|+.|++++ +..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++| ..... +
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-i 798 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-W 798 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC-C
T ss_pred ccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc-C
Confidence 22566664433 445666665 666666666666666666666666666666666553 22222 3
Q ss_pred CCC---CCccceeecccCccCcccCC
Q 047103 822 PEL---PPHLVMLDARNCKRLQSLPE 844 (1095)
Q Consensus 822 p~l---~~sL~~L~l~~c~~L~~lp~ 844 (1095)
|.. .++|+.|++++|.. +.+|.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCH
Confidence 432 25666666666653 55553
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.6e-26 Score=286.29 Aligned_cols=299 Identities=17% Similarity=0.248 Sum_probs=186.6
Q ss_pred cCCCCCCCCCCcceEEcccCCCCC------------------C----C--CCCcceeecccCCCCccccCC-CCCCcccc
Q 047103 539 LDQGLDYLPKELRYLHWHQYPLKN------------------E----D--KAPKLKYIDLNHSSNLTRIPE-PSETPNLD 593 (1095)
Q Consensus 539 ~~~~l~~l~~~Lr~L~l~~~~l~~------------------l----~--~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 593 (1095)
+|..+..++ +|++|++++|.+.. + . .+++|++|+|++|.+...+|. +.++++|+
T Consensus 198 ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 344444554 78889988888776 3 3 788899999998888887775 78888899
Q ss_pred EeeccCCc-cCc-cccccccCC------CCcceEeccCCCCCcccCC--cccccccce-eeccCCcccCCCccc--cCCc
Q 047103 594 RMNLWNCT-GLA-LIPSYIQNF------NNLGNLSLEGCESLRCFPQ--NIHFVSSIK-INCSECVNLSEFPRI--SGNV 660 (1095)
Q Consensus 594 ~L~L~~~~-~l~-~lp~~i~~L------~~L~~L~L~~c~~l~~lp~--~i~~l~~L~-l~l~~c~~L~~~p~~--~~~L 660 (1095)
+|+|++|. ..+ .+|..++.+ ++|++|+|++|... .+|. .+..+++|+ +.++++..-..+|.. ..+|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 99998887 665 678777776 88888888886655 7787 788888888 777765543366621 1356
Q ss_pred eEEEecCCCCccccCccCCCCC-CcEEeccCCCCCCccccccCCCC--CCCEEEccCcccccccccccc-----------
Q 047103 661 VELKLRHTPIEEVPSSIDCLPD-LETLEMSNCYSLKSLSTNICKLK--SLRSLHLAFCEQLGKEASNIK----------- 726 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~-L~~L~Ls~~~~l~~lp~~l~~L~--~L~~L~Ls~~~~~~~~~~~i~----------- 726 (1095)
+.|+|++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7777777777777777777777 777777777655 6676666544 777777777776664433222
Q ss_pred ------------ccCccc-cCCCCCCEEEecCCCCCCCCCcccCC--------CccccccccCC--CcccCcccC--CCC
Q 047103 727 ------------ELPSSI-ENLEGLRELQLMGCTKLGSLPESLGN--------LKALEFLSAAG--IIKIPRDIG--CLS 781 (1095)
Q Consensus 727 ------------~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~--------L~~L~~L~l~~--~~~lp~~l~--~l~ 781 (1095)
.+|..+ ..+++|+.|+|++|.+. .+|..... +++|+.|++++ +..+|..+. .++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 233322 23455555555555554 33332211 12555554332 444555554 555
Q ss_pred CCCeeeCCCCCCcccCcccCCCCCCCEEeccC------CCCcccCCCCC---CCccceeecccCccCcccC
Q 047103 782 SLVELDLSRNNFESLPSGISHLSRLKWLHLFD------CIMLQSSLPEL---PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 782 ~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~------c~~l~~~lp~l---~~sL~~L~l~~c~~L~~lp 843 (1095)
+|+.|+|++|+++.+|..+..+++|+.|+|++ |..... +|.. .++|+.|++++|.. +.+|
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-CccC
Confidence 56666666655555555555555566665533 222222 3321 24555555555553 4444
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.3e-25 Score=283.30 Aligned_cols=309 Identities=17% Similarity=0.166 Sum_probs=248.5
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCC-CCC-------------CCCCCcceeecccC
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYP-LKN-------------EDKAPKLKYIDLNH 576 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l~~-------------l~~l~~L~~L~Ls~ 576 (1095)
|.++++|+.|++++|.+.. .+|..+..++ +|+.|++++|. +.. +..+++|+.|+|++
T Consensus 487 f~~L~~L~~L~Ls~N~l~~--------~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMT--------QLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp GGGCTTCCEEEEESCTTCC--------SCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred hccCCCCCEEECcCCCCCc--------cChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 4499999999999997642 2334455565 89999999997 653 24556999999999
Q ss_pred CCCccccCC---CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCccccccc-ce-eeccCCcccC
Q 047103 577 SSNLTRIPE---PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS-IK-INCSECVNLS 651 (1095)
Q Consensus 577 n~~l~~~p~---~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~-L~-l~l~~c~~L~ 651 (1095)
|.+. .+|. +..+++|++|+|++|... .+| .++.+++|+.|+|++|... .+|..+..+++ |+ +.++++. +.
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~ 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LK 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CC
Confidence 9877 7776 899999999999999877 888 8999999999999997765 89999999999 99 8888775 66
Q ss_pred CCccccC-----CceEEEecCCCCcccc----CccC--CCCCCcEEeccCCCCCCcccccc-CCCCCCCEEEccCccccc
Q 047103 652 EFPRISG-----NVVELKLRHTPIEEVP----SSID--CLPDLETLEMSNCYSLKSLSTNI-CKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 652 ~~p~~~~-----~L~~L~L~~n~i~~lp----~~i~--~l~~L~~L~Ls~~~~l~~lp~~l-~~L~~L~~L~Ls~~~~~~ 719 (1095)
.+|.... +|+.|+|++|.+...+ ..+. .+++|+.|+|++|.+. .+|..+ ..+++|+.|+|++|.+.
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 8886543 3899999999997543 2333 4569999999999877 666665 48999999999998766
Q ss_pred cccccccc-cCccccCCCCCCEEEecCCCCCCCCCcccC--CCccccccccCC--CcccCcccCCCCCCCeeeCCC----
Q 047103 720 KEASNIKE-LPSSIENLEGLRELQLMGCTKLGSLPESLG--NLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSR---- 790 (1095)
Q Consensus 720 ~~~~~i~~-lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~--~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~---- 790 (1095)
.+|..+.. .+..+.++++|+.|+|++|.+. .+|..+. .+++|+.|++++ +..+|..+..+++|+.|+|++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCT
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCc
Confidence 23322111 1112334559999999999887 7888887 999999997655 667999999999999999987
Q ss_pred --CCCc-ccCcccCCCCCCCEEeccCCCCcccCCCC-CCCccceeecccCcc
Q 047103 791 --NNFE-SLPSGISHLSRLKWLHLFDCIMLQSSLPE-LPPHLVMLDARNCKR 838 (1095)
Q Consensus 791 --n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~~lp~-l~~sL~~L~l~~c~~ 838 (1095)
|++. .+|..+.++++|+.|+|++|+. .. +|. ++++|+.|++++|+.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~-Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RK-VDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB-CCSCCCSSSCEEECCSCTT
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-Cc-cCHhhcCCCCEEECCCCCC
Confidence 5555 7898999999999999999977 65 665 678999999999983
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1e-25 Score=278.24 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=75.7
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L 569 (1095)
.+|++++....+.+.+|.++++|+.|++++|.++.++. ..+..++ .|++|++++|.+..+ ..+++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~--------~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED--------KAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------TTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH--------HHhhchh-hcCEeECCCCcccccChhhcCCcccC
Confidence 35666676667777777777777777777777664432 2223333 566666666654433 456666
Q ss_pred eeecccCCCCccccC-CCCCCccccEeeccCCccCc-cccccccCCCCcceEeccCCCCCc
Q 047103 570 KYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLA-LIPSYIQNFNNLGNLSLEGCESLR 628 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~c~~l~ 628 (1095)
++|+|++|.+....+ .++.+++|++|+|++|.... .+|..++++++|++|+|++|....
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 666666665544332 36666666666666666544 456666666666666666654443
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=6.1e-25 Score=271.34 Aligned_cols=326 Identities=21% Similarity=0.192 Sum_probs=209.7
Q ss_pred cccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcce
Q 047103 496 LDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKLK 570 (1095)
Q Consensus 496 ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L~ 570 (1095)
+|++++....+.+.+|.++++|+.|++++|.++.++ +..+..++ .|++|++++|.+..+ ..+++|+
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--------ETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC--------TTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccccC--------hhhhcccc-cccEeeccccCcccCCcchhccCCccc
Confidence 344444444444444445555555555444443221 22333333 777777777766553 5677788
Q ss_pred eecccCCCCcc-ccCCCCCCccccEeeccCCccCccccccccCCCCcc--eEeccCCCCCcccCCcccccccce-eeccC
Q 047103 571 YIDLNHSSNLT-RIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLG--NLSLEGCESLRCFPQNIHFVSSIK-INCSE 646 (1095)
Q Consensus 571 ~L~Ls~n~~l~-~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~--~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~ 646 (1095)
+|+|++|.+.. ..|.+..+++|++|+|++|......|..++.+++|+ .|++++|......|..+. ..+|+ +.+.+
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCC
Confidence 88888876655 345666678888888888777766677777778877 778887765555444333 33344 33333
Q ss_pred Cc---------------------------------------------------ccCCCcc----ccCCceEEEecCCCCc
Q 047103 647 CV---------------------------------------------------NLSEFPR----ISGNVVELKLRHTPIE 671 (1095)
Q Consensus 647 c~---------------------------------------------------~L~~~p~----~~~~L~~L~L~~n~i~ 671 (1095)
|. .+..++. ...+|++|++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 32 2222222 2346777777777777
Q ss_pred cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCC
Q 047103 672 EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGS 751 (1095)
Q Consensus 672 ~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 751 (1095)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+..+++|+.|++++|.+.+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG------TGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC------SSTTTTCTTCCEEECCSSCCCEE
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc------hhhhhccCcCCEEECCCCccccc
Confidence 777777777777777777777766667677777777777777776554222 12367788888888888887765
Q ss_pred C--CcccCCCccccccccCCC--cc-cCcccCCCCCCCeeeCCCCCCccc-C-cccCCCCCCCEEeccCCCCcccCCCCC
Q 047103 752 L--PESLGNLKALEFLSAAGI--IK-IPRDIGCLSSLVELDLSRNNFESL-P-SGISHLSRLKWLHLFDCIMLQSSLPEL 824 (1095)
Q Consensus 752 l--p~~l~~L~~L~~L~l~~~--~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p-~~l~~L~~L~~L~L~~c~~l~~~lp~l 824 (1095)
. |..+.++++|+.|++++. .. .|..+..+++|+.|+|++|.++.. | ..+..+++|+.|++++|..... .|..
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~ 444 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQL 444 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHH
Confidence 5 667788888888866553 33 456677788888888888887744 2 2477788888888888865443 4432
Q ss_pred ---CCccceeecccCcc
Q 047103 825 ---PPHLVMLDARNCKR 838 (1095)
Q Consensus 825 ---~~sL~~L~l~~c~~ 838 (1095)
.++|+.|++++|..
T Consensus 445 ~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTTCTTCCEEECTTCBC
T ss_pred HhCCCCCCEEECCCCCC
Confidence 36788888888763
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=7.2e-26 Score=280.41 Aligned_cols=314 Identities=16% Similarity=0.153 Sum_probs=254.9
Q ss_pred cccccc--cCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCC-CCC--C----CC------CCccee
Q 047103 507 TCGAFK--NMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYP-LKN--E----DK------APKLKY 571 (1095)
Q Consensus 507 ~~~~f~--~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l~~--l----~~------l~~L~~ 571 (1095)
-+..+. ++++|++|++++|.+.. .+|..+..++ +|++|++++|. +.. + .. +++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT--------KLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS--------SCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCCcCCc--------cChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 466677 99999999999998652 3345566666 89999999998 764 2 33 489999
Q ss_pred ecccCCCCccccCC---CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCccccccc-ce-eeccC
Q 047103 572 IDLNHSSNLTRIPE---PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS-IK-INCSE 646 (1095)
Q Consensus 572 L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~-L~-l~l~~ 646 (1095)
|+|++|.+. .+|. ++.+++|++|+|++|...+.+| .++.+++|++|+|++|... .+|..+..+++ |+ +.+++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 999999877 7776 8999999999999999888999 8999999999999997644 89999999999 99 88877
Q ss_pred CcccCCCccccC-----CceEEEecCCCCcc-ccCccC-------CCCCCcEEeccCCCCCCccccc-cCCCCCCCEEEc
Q 047103 647 CVNLSEFPRISG-----NVVELKLRHTPIEE-VPSSID-------CLPDLETLEMSNCYSLKSLSTN-ICKLKSLRSLHL 712 (1095)
Q Consensus 647 c~~L~~~p~~~~-----~L~~L~L~~n~i~~-lp~~i~-------~l~~L~~L~Ls~~~~l~~lp~~-l~~L~~L~~L~L 712 (1095)
+. +..+|.... +|+.|++++|.+.. +|..+. .+++|+.|+|++|.+. .+|.. +..+++|++|+|
T Consensus 387 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred Cc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 65 558886543 68999999999984 667777 7889999999999877 55554 556999999999
Q ss_pred cCcccccccccc-ccccCccccCCCCCCEEEecCCCCCCCCCcccC--CCccccccccCC--CcccCcccCCCCCCCeee
Q 047103 713 AFCEQLGKEASN-IKELPSSIENLEGLRELQLMGCTKLGSLPESLG--NLKALEFLSAAG--IIKIPRDIGCLSSLVELD 787 (1095)
Q Consensus 713 s~~~~~~~~~~~-i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~--~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~ 787 (1095)
++|.+.. +|.. ....+..+.++++|+.|+|++|.+. .+|..+. .+++|+.|++++ +..+|..+..+++|+.|+
T Consensus 465 s~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEE
T ss_pred CCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEE
Confidence 9987763 3322 1111222334559999999999988 7888887 999999997665 667999999999999999
Q ss_pred CC------CCCCc-ccCcccCCCCCCCEEeccCCCCcccCCCC-CCCccceeecccCcc
Q 047103 788 LS------RNNFE-SLPSGISHLSRLKWLHLFDCIMLQSSLPE-LPPHLVMLDARNCKR 838 (1095)
Q Consensus 788 Ls------~n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~~lp~-l~~sL~~L~l~~c~~ 838 (1095)
|+ +|++. .+|..+..+++|+.|+|++|.. +. +|. ++++|+.|++++|+.
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK-VNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB-CCSCCCTTCCEEECCSCTT
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc-cCHhHhCcCCEEECcCCCC
Confidence 95 45555 7899999999999999999987 55 665 678999999999983
No 15
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.93 E-value=1.1e-27 Score=239.02 Aligned_cols=112 Identities=17% Similarity=0.310 Sum_probs=107.6
Q ss_pred CCcccccccCcchHHHHHHHhhCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccc
Q 047103 1 METTGEDTRVIFISHLYAALCRKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKK 80 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~ 80 (1095)
|||+|+| |+.|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|+|++|++|.||++||.+|++|.+
T Consensus 25 ISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~ 103 (154)
T 3h16_A 25 ISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLES 103 (154)
T ss_dssp EEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCT
T ss_pred EECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHh
Confidence 6999999 789999999999999999999999899999999999999999999999999999999999999999999988
Q ss_pred cCCCeEEeEEeeeccccccccccccchHHHHHH
Q 047103 81 ANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFG 113 (1095)
Q Consensus 81 ~~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~ 113 (1095)
+++++|+||||+|+|++||+|.|.|+++|+...
T Consensus 104 ~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 104 SGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp TSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred cCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 888999999999999999999999999987653
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.8e-25 Score=264.26 Aligned_cols=331 Identities=17% Similarity=0.143 Sum_probs=241.4
Q ss_pred ecccCCCccccccccccccCCccceeeecCCccc-ccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFT-FIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPK 568 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~-~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~ 568 (1095)
.+|++++....+.+..|.++++|++|++++|.+. .++ +..+..++ +|++|++++|.+.. +..+++
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~--------~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--------NNTFRGLS-SLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC--------TTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceEC--------cccccccc-cCCEEeCCCCccCccChhhccCccc
Confidence 4677888777788888999999999999888764 222 22344444 78888888887643 467888
Q ss_pred ceeecccCCCCccccC-C--CCCCccccEeeccCCccCcccccc-ccCCCCcceEeccCCCCCcccCCccccc--ccce-
Q 047103 569 LKYIDLNHSSNLTRIP-E--PSETPNLDRMNLWNCTGLALIPSY-IQNFNNLGNLSLEGCESLRCFPQNIHFV--SSIK- 641 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p-~--~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~i~~l--~~L~- 641 (1095)
|++|+|++|.+....| . +..+++|++|+|++|......|.. +.++++|++|+|++|......|..+..+ .+|+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 8888888887765433 2 788888888888888877776765 7888888888888887777767766655 4556
Q ss_pred eeccCCcccCCCcc------------ccCCceEEEecCCCCcc-ccCccC---CCCCCcEEeccCCCCCCccc-------
Q 047103 642 INCSECVNLSEFPR------------ISGNVVELKLRHTPIEE-VPSSID---CLPDLETLEMSNCYSLKSLS------- 698 (1095)
Q Consensus 642 l~l~~c~~L~~~p~------------~~~~L~~L~L~~n~i~~-lp~~i~---~l~~L~~L~Ls~~~~l~~lp------- 698 (1095)
+.+.++. +..++. ...+|++|++++|.++. +|..+. ..++|+.|++++|...+...
T Consensus 185 L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 185 LRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 5555543 333322 12467888888888773 444332 23778888888775544211
Q ss_pred ---cccC--CCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Cc
Q 047103 699 ---TNIC--KLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--II 771 (1095)
Q Consensus 699 ---~~l~--~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~ 771 (1095)
..+. ..++|++|++++|.+.+ ..|..+..+++|+.|+|++|.+.+..|..+.++++|+.|++++ +.
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFA-------LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccccccccccCceEEEecCccccc-------cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 1111 23689999999987765 3456688899999999999999988888899999999997765 44
Q ss_pred cc-CcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCccCcccC
Q 047103 772 KI-PRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 772 ~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L~~lp 843 (1095)
.+ |..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|..... .+.. .++|+.|++++|+--...|
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCCC
Confidence 54 56788999999999999999976 66889999999999999865432 3322 3789999999998655554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=9.6e-25 Score=269.56 Aligned_cols=333 Identities=18% Similarity=0.109 Sum_probs=259.2
Q ss_pred eecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCc
Q 047103 494 IFLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPK 568 (1095)
Q Consensus 494 i~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~ 568 (1095)
..+|++++....+.+.+|.++++|++|++++|.++.+. +..+..++ +|++|++++|.+.. +..+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH--------EDTFQSQH-RLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC--------TTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeC--------hhhccCcc-ccCeeeCCCCcccccChhhhccccc
Confidence 36788999888999999999999999999999886543 33445555 89999999998754 478999
Q ss_pred ceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce---eec
Q 047103 569 LKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK---INC 644 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~---l~l 644 (1095)
|++|+|++|.+....| .+..+++|++|+|++|......+..+..+++|++|++++|......|..+..+++|+ +.+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 9999999998776533 489999999999999988774434455599999999999877766666676677665 556
Q ss_pred cCCcccCCCcccc------------------------------------------------------CCceEEEecCCCC
Q 047103 645 SECVNLSEFPRIS------------------------------------------------------GNVVELKLRHTPI 670 (1095)
Q Consensus 645 ~~c~~L~~~p~~~------------------------------------------------------~~L~~L~L~~n~i 670 (1095)
.++..-...|... .+++.|++++|.+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 6554322222111 1577888889998
Q ss_pred ccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCC
Q 047103 671 EEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKL 749 (1095)
Q Consensus 671 ~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~ 749 (1095)
+.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+. .|..+.++++|+.|++++|.+.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-------CQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-------GGGCGGGCTTCSEEECCSCSSC
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-------chhhhhccCcCCEEECCCCCcc
Confidence 887765 888999999999998655 7888899999999999999876653 2445788899999999999988
Q ss_pred CCCCcc-cCCCccccccccCC--Cccc---CcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCCcccCCC
Q 047103 750 GSLPES-LGNLKALEFLSAAG--IIKI---PRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSLP 822 (1095)
Q Consensus 750 ~~lp~~-l~~L~~L~~L~l~~--~~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~lp 822 (1095)
+.+|.. +..+++|+.|++++ +..+ |..+..+++|+.|+|++|.+..+ |..+..+++|+.|++++|.......+
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 777654 88999999997765 3333 66788999999999999999865 56788999999999999976544222
Q ss_pred C---CCCccceeecccCccCcccC
Q 047103 823 E---LPPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 823 ~---l~~sL~~L~l~~c~~L~~lp 843 (1095)
. -.++|+.|++++|..-...|
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCT
T ss_pred hhhhCcccCCEEECCCCccCCcCH
Confidence 2 23789999999997544333
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=4.3e-25 Score=272.73 Aligned_cols=178 Identities=20% Similarity=0.137 Sum_probs=147.7
Q ss_pred cCCceEEEecCCCCccc---cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-ccc
Q 047103 657 SGNVVELKLRHTPIEEV---PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP-SSI 732 (1095)
Q Consensus 657 ~~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp-~~l 732 (1095)
..+|+.|++++|.++.+ |..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+. .| ..+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~ 420 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRV-------TEFSAF 420 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEEST-------TTTTTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCc-------cChhhh
Confidence 35788888998888866 677889999999999998754 5778899999999999999887663 23 457
Q ss_pred cCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCC--cc--cCcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCC
Q 047103 733 ENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGI--IK--IPRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLK 807 (1095)
Q Consensus 733 ~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~--~~--lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~ 807 (1095)
.++++|+.|++++|.+.+..|..+.++++|+.|++.+. .. +|..++.+++|+.|+|++|.++.+ |..+..+++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 88999999999999999999999999999999987764 33 688899999999999999999865 56789999999
Q ss_pred EEeccCCCCcccCCCCC---CCccceeecccCccCcccCC
Q 047103 808 WLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRLQSLPE 844 (1095)
Q Consensus 808 ~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L~~lp~ 844 (1095)
+|+|++|+.... .|.. .++|+.|++++|. ++.+|.
T Consensus 501 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 501 LLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp EEECCSSCCSCE-EGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred EEECCCCcCCCc-CHHHccCCCcCCEEECCCCc-CcccCH
Confidence 999999976544 4442 3689999999997 667764
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=8.1e-25 Score=268.03 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=80.7
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCC-----CCCCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLK-----NEDKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-----~l~~l~~L 569 (1095)
.+|++.+....+.+.+|.++++|+.|++++|.++.++. ..+..++ .|++|++++|.+. .+..+++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT--------TTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc--------ccccCch-hCCEEeCcCCcCCccCHhhhcCcccc
Confidence 35777777777777788888888888888887765442 2233333 6777777776553 34566777
Q ss_pred eeecccCCCCccccC-CCCCCccccEeeccCCccCc-cccccccCCCCcceEeccCCCCCc
Q 047103 570 KYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLA-LIPSYIQNFNNLGNLSLEGCESLR 628 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~c~~l~ 628 (1095)
++|+|++|.+....+ .++.+++|++|+|++|.... .+|..++++++|++|++++|....
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 777777775443332 26677777777777766554 356667777777777777665443
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=3.4e-25 Score=270.20 Aligned_cols=320 Identities=21% Similarity=0.248 Sum_probs=192.7
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L 569 (1095)
.+|++.+....+.+.+|.++++|++|++++|.++.++. ..+..++ .|++|++++|.+..+ ..+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--------TTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--------hhccccc-cCCEEECCCCccCccCHHHhccCCCC
Confidence 45666666666666777777777777777777664432 2223333 566666666655443 445566
Q ss_pred eeecccCCCCcc-cc-CCCCCCccccEeeccCCccCcccc-ccccCCCCcceEeccCCCCCcccCCcccccccce-eec-
Q 047103 570 KYIDLNHSSNLT-RI-PEPSETPNLDRMNLWNCTGLALIP-SYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INC- 644 (1095)
Q Consensus 570 ~~L~Ls~n~~l~-~~-p~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l- 644 (1095)
++|+|++|.+.. .. +.+..+++|++|++++|...+.+| ..+.++++|++|++++|......|..+..+++|+ +.+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 666666665443 12 235556666666666655444444 3455555566666555554444444444333333 222
Q ss_pred -----------------------cCCcccCCC------------------------------------------------
Q 047103 645 -----------------------SECVNLSEF------------------------------------------------ 653 (1095)
Q Consensus 645 -----------------------~~c~~L~~~------------------------------------------------ 653 (1095)
+++. +..+
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 2111 0000
Q ss_pred ----------------------------------------------ccccCCceEEEecCCCCccccCcc-CCCCCCcEE
Q 047103 654 ----------------------------------------------PRISGNVVELKLRHTPIEEVPSSI-DCLPDLETL 686 (1095)
Q Consensus 654 ----------------------------------------------p~~~~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L 686 (1095)
....++|+.|++++|.++.+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 001134666666677777677665 467888888
Q ss_pred eccCCCCCCcccc---ccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccc
Q 047103 687 EMSNCYSLKSLST---NICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE 763 (1095)
Q Consensus 687 ~Ls~~~~l~~lp~---~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~ 763 (1095)
++++|.+.+.+|. .++.+++|++|++++|.+.+..+ .+..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-----TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH-----HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCccccccc-----chhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 8888887776643 36778888888888876644210 1123677888888888888766 5777788888888
Q ss_pred ccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCC--CCccceeecccCc
Q 047103 764 FLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPEL--PPHLVMLDARNCK 837 (1095)
Q Consensus 764 ~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l--~~sL~~L~l~~c~ 837 (1095)
.|++++ +..+|..+ .++|+.|+|++|+++.++ ..+++|++|+|++|+. +. +|.. .++|+.|++++|.
T Consensus 414 ~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l-~~-ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 414 FLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKL-KT-LPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SS-CCCGGGCTTCCEEECCSSC
T ss_pred EEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCcc-Cc-CCCcccCccCCEEecCCCc
Confidence 886655 44455443 256777777777776654 4677788888888753 34 5543 4678888888775
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=265.59 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=124.7
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
++.|++++|.+..++. ...+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+ +..+|..+..+++|+
T Consensus 304 L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-----LSKIAEMTTQMKSLQ 377 (520)
T ss_dssp CSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-----HHHHHHHHTTCTTCC
T ss_pred eeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-----cccchHHHhhCCCCC
Confidence 4445555554443331 2577888889998888888888888888999999998887654 224556678888999
Q ss_pred EEEecCCCCCCCCCcc-cCCCccccccccCCC---cccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCC
Q 047103 740 ELQLMGCTKLGSLPES-LGNLKALEFLSAAGI---IKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~~-l~~L~~L~~L~l~~~---~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~ 815 (1095)
.|++++|.+.+.+|.. +..+++|+.|++++. ..+|..+. ++|+.|+|++|+++.+|..+..+++|++|+|++|+
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 9999999888866654 778888888877664 23444433 68999999999999999888889999999999885
Q ss_pred CcccCCCC--C--CCccceeecccCc
Q 047103 816 MLQSSLPE--L--PPHLVMLDARNCK 837 (1095)
Q Consensus 816 ~l~~~lp~--l--~~sL~~L~l~~c~ 837 (1095)
.. . +|. + .++|+.|++++|+
T Consensus 456 l~-~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 456 LK-S-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CC-C-CCTTTTTTCTTCCEEECCSSC
T ss_pred CC-c-cCHHHhccCCcccEEECcCCC
Confidence 43 4 554 2 2678888888887
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.3e-24 Score=262.22 Aligned_cols=322 Identities=16% Similarity=0.137 Sum_probs=223.5
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC--CCCCcceee
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE--DKAPKLKYI 572 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--~~l~~L~~L 572 (1095)
.+|++++....+.+.+|.++++|+.|++++|.++.++. ..+..++ .|++|++++|.+..+ ..+++|++|
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~-~L~~L~Ls~N~l~~lp~~~l~~L~~L 126 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--------HVFLFNQ-DLEYLDVSHNRLQNISCCPMASLRHL 126 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--------TTTTTCT-TCCEEECTTSCCCEECSCCCTTCSEE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--------HHhCCCC-CCCEEECCCCcCCccCccccccCCEE
Confidence 46778888888888889999999999999888775532 2344444 788888888877665 267888888
Q ss_pred cccCCCCccc-cC-CCCCCccccEeeccCCccCccccccccCCCCc--ceEeccCCCC--CcccCCccccc---------
Q 047103 573 DLNHSSNLTR-IP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNL--GNLSLEGCES--LRCFPQNIHFV--------- 637 (1095)
Q Consensus 573 ~Ls~n~~l~~-~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~L~~c~~--l~~lp~~i~~l--------- 637 (1095)
+|++|.+... +| .+.++++|++|+|++|.... ..+..+++| ++|+|++|.. ....|..+..+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 8888876552 33 47888888888888877654 234455555 8888887765 44444443332
Q ss_pred -----------------ccce-eeccC-----------------------------------------------------
Q 047103 638 -----------------SSIK-INCSE----------------------------------------------------- 646 (1095)
Q Consensus 638 -----------------~~L~-l~l~~----------------------------------------------------- 646 (1095)
++|+ +.+.+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 2233 22222
Q ss_pred --CcccCCCcccc----------------------------------CCceEEEecCCCCccccCccCCCCCCcEEeccC
Q 047103 647 --CVNLSEFPRIS----------------------------------GNVVELKLRHTPIEEVPSSIDCLPDLETLEMSN 690 (1095)
Q Consensus 647 --c~~L~~~p~~~----------------------------------~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~ 690 (1095)
|.....+|... .+++.|++++|.+..++. ...+++|++|++++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCC
Confidence 21111222211 123334444444332221 16788999999999
Q ss_pred CCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCc-ccCCCccccccccCC
Q 047103 691 CYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPE-SLGNLKALEFLSAAG 769 (1095)
Q Consensus 691 ~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~-~l~~L~~L~~L~l~~ 769 (1095)
|.+.+.+|..+.++++|++|++++|.+.+ +..+|..+.++++|+.|++++|.+.+.+|. .+..+++|+.|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKN-----FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCB-----TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCC-----cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 99888888889999999999999987654 223455688899999999999998885665 478889999997776
Q ss_pred Cc---ccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCC----CCccceeecccCcc
Q 047103 770 II---KIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPEL----PPHLVMLDARNCKR 838 (1095)
Q Consensus 770 ~~---~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l----~~sL~~L~l~~c~~ 838 (1095)
.. .+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|... . +|.. .++|+.|++++|+-
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~-l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-S-VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-C-CCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-C-CCHHHHhcCCCCCEEEecCCCc
Confidence 43 2333332 6899999999999999998889999999999998654 4 5542 36888999998873
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=263.96 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=134.7
Q ss_pred cccCCceEEEecCCCCcc-ccCccCCCCCCcEEeccCCCCCC--ccccccCCCCCCCEEEccCccccccccccccccCcc
Q 047103 655 RISGNVVELKLRHTPIEE-VPSSIDCLPDLETLEMSNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS 731 (1095)
Q Consensus 655 ~~~~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~Ls~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~ 731 (1095)
....+|++|++++|.++. +|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|.. .
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------D 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------S
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc------h
Confidence 566789999999999996 78889999999999999999876 67788999999999999999877633321 3
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcc-cCCCCCCCE
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKW 808 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~ 808 (1095)
+..+++|+.|++++|.+.+..|..+. ++|+.|++++ +..+|..+..+++|+.|+|++|+++.+|.. +..+++|+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccE
Confidence 67789999999999999888887664 7888886654 778999888999999999999999999987 899999999
Q ss_pred EeccCCCCc
Q 047103 809 LHLFDCIML 817 (1095)
Q Consensus 809 L~L~~c~~l 817 (1095)
|++++|+..
T Consensus 473 L~l~~N~~~ 481 (520)
T 2z7x_B 473 IWLHTNPWD 481 (520)
T ss_dssp EECCSSCBC
T ss_pred EECcCCCCc
Confidence 999999753
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-24 Score=266.47 Aligned_cols=271 Identities=15% Similarity=0.101 Sum_probs=195.5
Q ss_pred CcceEEcccCCCC-----CCCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEecc
Q 047103 549 ELRYLHWHQYPLK-----NEDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLE 622 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~-----~l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 622 (1095)
.|++|++++|.+. .+..+++|++|+|++|.+....|. |+.+++|++|+|++|......+..|+++++|++|+|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 4555555555443 235566777777777765555444 5677777777777776554434445677777777777
Q ss_pred CCCCCcccCCcccccccce-eeccCCcccCCC-ccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccc
Q 047103 623 GCESLRCFPQNIHFVSSIK-INCSECVNLSEF-PRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTN 700 (1095)
Q Consensus 623 ~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~-p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~ 700 (1095)
+|......|..+..+++|+ +.++++. +..+ +..+.+|+.|++++|.++.++ ..++|+.|++++|.+.. +|..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~-~~~~ 229 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINV-VRGP 229 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCE-EECS
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCcccccc----CCchhheeeccCCcccc-cccc
Confidence 7666555555666777777 6666553 3332 244567788888888887654 34678888888876543 3332
Q ss_pred cCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccC
Q 047103 701 ICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIG 778 (1095)
Q Consensus 701 l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~ 778 (1095)
+ .++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|..+.++++|+.|++++ +..+|..+.
T Consensus 230 ~--~~~L~~L~L~~n~l~~---------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 298 (597)
T 3oja_B 230 V--NVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298 (597)
T ss_dssp C--CSCCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS
T ss_pred c--CCCCCEEECCCCCCCC---------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc
Confidence 2 3688888988887655 24577888899999999888888888888888888886654 566788888
Q ss_pred CCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCCCCccceeecccCc
Q 047103 779 CLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 779 ~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~ 837 (1095)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++|+.... .....++|+.|++++|+
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEECCSSC
T ss_pred cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-ChhhcCCCCEEEeeCCC
Confidence 89999999999999999999999999999999999976544 33445789999999987
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-24 Score=250.53 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=181.5
Q ss_pred CcceEEcccCCCC-----CCCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEecc
Q 047103 549 ELRYLHWHQYPLK-----NEDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLE 622 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~-----~l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 622 (1095)
.|++|+++++.+. .+..+++|++|+|++|.+....|. +..+++|++|+|++|......+..+.++++|++|+|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 4455555544432 234556666666666655544444 5666666666666665443222334666666666666
Q ss_pred CCCCCcccCCcccccccce-eeccCCcccCCC-ccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccc
Q 047103 623 GCESLRCFPQNIHFVSSIK-INCSECVNLSEF-PRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTN 700 (1095)
Q Consensus 623 ~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~-p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~ 700 (1095)
+|......|..+..+++|+ +.++++. +..+ ...+.+|+.|++++|.++.++ ..++|+.|++++|.+.. +|..
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~-~~~~ 223 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINV-VRGP 223 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCE-EECC
T ss_pred CCccCccChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccC----CCCcceEEECCCCeeee-cccc
Confidence 6555444455566666666 5555543 2222 234456778888888777554 23578888888876543 3432
Q ss_pred cCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccC
Q 047103 701 ICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIG 778 (1095)
Q Consensus 701 l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~ 778 (1095)
..++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..|..+.++++|+.|++.+ +..+|..+.
T Consensus 224 --~~~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 224 --VNVELTILKLQHNNLTDT---------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp --CCSSCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred --ccccccEEECCCCCCccc---------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 357788888888766541 3467788888888888888777788888888888886554 556777778
Q ss_pred CCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCCCCccceeecccCc
Q 047103 779 CLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 779 ~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~ 837 (1095)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++|+.... .....++|+.|++++|+
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-CchhhccCCEEEcCCCC
Confidence 89999999999999999998888999999999999975443 23345789999999886
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=4.3e-24 Score=273.43 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCccc-cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccc
Q 047103 658 GNVVELKLRHTPIEEV-PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~ 719 (1095)
.+|+.|+|++|.+..+ |..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 3566666666666644 3445666666666666666666556666666666666666665544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.6e-24 Score=251.42 Aligned_cols=309 Identities=18% Similarity=0.146 Sum_probs=248.8
Q ss_pred ecccCCCccc-cccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-------CCCC
Q 047103 495 FLDLSNKTDI-HLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-------EDKA 566 (1095)
Q Consensus 495 ~ldls~~~~~-~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-------l~~l 566 (1095)
.++++.+... .+.+.+|.++++|++|++++|.++.++ +..+..++ +|++|++++|.+.. +..+
T Consensus 58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--------TGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--------TTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred EEECcCCcccceECcccccccccCCEEeCCCCccCccC--------hhhccCcc-cCCEEeCCCCCCCccccCcccccCc
Confidence 4667777654 677889999999999999999986542 33445555 89999999998865 6889
Q ss_pred CcceeecccCCCCccccCC--CCCCccccEeeccCCccCccccccccCC--CCcceEeccCCCCCcccCCc--------c
Q 047103 567 PKLKYIDLNHSSNLTRIPE--PSETPNLDRMNLWNCTGLALIPSYIQNF--NNLGNLSLEGCESLRCFPQN--------I 634 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~L~~c~~l~~lp~~--------i 634 (1095)
++|++|+|++|.+....|. +..+++|++|+|++|......|..+..+ .+|+.|++++|......+.. +
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 9999999999988777675 7899999999999999988888888877 78999999997655533322 3
Q ss_pred cccccce-eeccCCcccCCCccc------cCCceEEEecCCCCccccC-----------ccC--CCCCCcEEeccCCCCC
Q 047103 635 HFVSSIK-INCSECVNLSEFPRI------SGNVVELKLRHTPIEEVPS-----------SID--CLPDLETLEMSNCYSL 694 (1095)
Q Consensus 635 ~~l~~L~-l~l~~c~~L~~~p~~------~~~L~~L~L~~n~i~~lp~-----------~i~--~l~~L~~L~Ls~~~~l 694 (1095)
..+++|+ +.++++......|.. ..+++.|++++|.+..... .+. ..++|+.|++++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 3567888 888887654444432 2678999999886542211 111 2368999999999999
Q ss_pred CccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Ccc
Q 047103 695 KSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIK 772 (1095)
Q Consensus 695 ~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~ 772 (1095)
+..|..+..+++|++|++++|.+.+. .|..+.++++|+.|+|++|.+.+..|..+.++++|+.|++++ +..
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKI-------DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ccchhhcccCCCCCEEECCCCccccc-------ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 98999999999999999999877652 355688899999999999999888888999999999997765 445
Q ss_pred c-CcccCCCCCCCeeeCCCCCCcccCcc-cCCCCCCCEEeccCCCCccc
Q 047103 773 I-PRDIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 773 l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~L~L~~c~~l~~ 819 (1095)
+ |..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+....
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 4 77899999999999999999998874 58999999999999986544
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=268.76 Aligned_cols=318 Identities=16% Similarity=0.142 Sum_probs=238.2
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcc-cccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKF-TFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPK 568 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l-~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~ 568 (1095)
.+|++.+....+.+..|.++++|++|++++|.+ ..+ .+..+..++ +|++|++++|.+.. +..+++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--------~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--------DKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--------CTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--------CHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcc
Confidence 467888888888889999999999999998843 222 134555565 89999999987654 478899
Q ss_pred ceeecccCCCCccccCC---CCCCccccEeeccCCccCcccc-ccccCCCCcceEeccCCCCCcccCCccccc--ccce-
Q 047103 569 LKYIDLNHSSNLTRIPE---PSETPNLDRMNLWNCTGLALIP-SYIQNFNNLGNLSLEGCESLRCFPQNIHFV--SSIK- 641 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l--~~L~- 641 (1095)
|++|+|++|.+...+|. +..+++|++|+|++|...+..+ ..++++++|++|+|++|......|..+..+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 99999999987765553 8899999999999998877654 578999999999999988777777777766 7788
Q ss_pred eeccCCcccCCCccccC---------CceEEEecCCCCc-cccCc-----------------------------------
Q 047103 642 INCSECVNLSEFPRISG---------NVVELKLRHTPIE-EVPSS----------------------------------- 676 (1095)
Q Consensus 642 l~l~~c~~L~~~p~~~~---------~L~~L~L~~n~i~-~lp~~----------------------------------- 676 (1095)
+.++++......|...+ +|+.|++++|.+. .+|..
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 77777665544443221 3788999888665 22221
Q ss_pred -cCC--CCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCC
Q 047103 677 -IDC--LPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLP 753 (1095)
Q Consensus 677 -i~~--l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 753 (1095)
+.. .++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+. .|..+.++++|+.|+|++|.+.+..|
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-------ADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-------CTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-------ChHHhcCCCCCCEEECCCCCCCccCH
Confidence 111 26899999999988888888889999999999999877652 34567888999999999999888888
Q ss_pred cccCCCccccccccCC--CcccCc-ccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCCCCccce
Q 047103 754 ESLGNLKALEFLSAAG--IIKIPR-DIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVM 830 (1095)
Q Consensus 754 ~~l~~L~~L~~L~l~~--~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~ 830 (1095)
..+.++++|+.|++.+ +..++. .+..+++|+.|+|++|.++.++. +++|+.|++++|+.. . +|....+++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~-l~~~~~~l~~ 405 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-T-LPKINLTANL 405 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-C-CCCCCTTCCE
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-c-ccccccccce
Confidence 8899999999987665 445543 57888999999999998887664 677777777777543 3 4443333333
Q ss_pred eecc
Q 047103 831 LDAR 834 (1095)
Q Consensus 831 L~l~ 834 (1095)
|+++
T Consensus 406 L~ls 409 (844)
T 3j0a_A 406 IHLS 409 (844)
T ss_dssp EECC
T ss_pred eecc
Confidence 3333
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.2e-23 Score=261.08 Aligned_cols=109 Identities=23% Similarity=0.243 Sum_probs=76.1
Q ss_pred CceEEEecCCCCcccc-CccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc----ccc
Q 047103 659 NVVELKLRHTPIEEVP-SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS----SIE 733 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~----~l~ 733 (1095)
+|+.|+|++|.++.++ ..+..+++|++|++++|.+.+..|..+.++++|+.|++++|...+..+ ...+|. .+.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQ 326 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc--cccccccChhhcc
Confidence 3777777777777554 456777777777777777776667777777777777777654333211 113333 577
Q ss_pred CCCCCCEEEecCCCCCCCCCcccCCCccccccccCC
Q 047103 734 NLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG 769 (1095)
Q Consensus 734 ~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~ 769 (1095)
.+++|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 889999999999998888888888888888887654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=251.26 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=151.6
Q ss_pred ccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCC-----CCCCCCcceeecccCCCCccccCC-CCCC
Q 047103 516 NLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLK-----NEDKAPKLKYIDLNHSSNLTRIPE-PSET 589 (1095)
Q Consensus 516 ~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-----~l~~l~~L~~L~Ls~n~~l~~~p~-~~~l 589 (1095)
+|+.|++++|.++.++. ..+..++ .|++|++++|.+. .+..+++|++|+|++|.+....+. |.++
T Consensus 33 ~l~~L~L~~n~l~~~~~--------~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ--------DEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TCSEEECCSSCCCEECT--------TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCcEEECCCCccceECH--------hHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 45555555555543321 1222222 4444444444332 235566777777777754433333 5677
Q ss_pred ccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCC
Q 047103 590 PNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTP 669 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~ 669 (1095)
++|++|+|++|......|..+..+++|++|+|++|......|..+..+++|+ +|+|++|.
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--------------------~L~l~~n~ 163 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE--------------------QLTLEKCN 163 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC--------------------EEEEESCC
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC--------------------EEECCCCc
Confidence 7777777777777666677777777777777777665555555555555554 45555555
Q ss_pred CccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCC
Q 047103 670 IEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 670 i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 748 (1095)
++.+|.. +..+++|+.|+|++|.+.+..+..+..+++|+.|++++|...+ .+|.......+|+.|+|++|.+
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-------TMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-------EECTTTTTTCCCSEEEEESSCC
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-------ccCcccccCccccEEECcCCcc
Confidence 5544432 4555555555555555444444445555555555555554433 2222233334555555555554
Q ss_pred CCCCCcccCCCccccccccCC--CcccC-cccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCCcccCCCCC
Q 047103 749 LGSLPESLGNLKALEFLSAAG--IIKIP-RDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSLPEL 824 (1095)
Q Consensus 749 ~~~lp~~l~~L~~L~~L~l~~--~~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~lp~l 824 (1095)
....+..+.++++|+.|++++ +..++ ..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|.. ....+..
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~ 315 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESV 315 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGG
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeCHhH
Confidence 433333455555555554433 22332 2355566666666666666644 44556666666666666633 2211111
Q ss_pred ---CCccceeecccCc
Q 047103 825 ---PPHLVMLDARNCK 837 (1095)
Q Consensus 825 ---~~sL~~L~l~~c~ 837 (1095)
.++|+.|++++|+
T Consensus 316 ~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 316 FHSVGNLETLILDSNP 331 (477)
T ss_dssp BSCGGGCCEEECCSSC
T ss_pred cCCCcccCEEEccCCC
Confidence 2456666666655
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.4e-23 Score=238.38 Aligned_cols=295 Identities=18% Similarity=0.204 Sum_probs=205.2
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceeecccCCCCccccCCCC
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYIDLNHSSNLTRIPEPS 587 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~Ls~n~~l~~~p~~~ 587 (1095)
+..+++|+.|+++++.++.++. +..++ +|++|++++|.+..+ ..+++|++|+|++|.+ ..+|.+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~----------~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG----------IEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDISALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT----------GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCGGGT
T ss_pred chhcccccEEEEeCCccccchh----------hhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCchHHc
Confidence 4456667777777666544331 22333 667777776665543 5667778888887743 3456677
Q ss_pred CCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCc--cccCCceEEE
Q 047103 588 ETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFP--RISGNVVELK 664 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p--~~~~~L~~L~ 664 (1095)
.+++|++|+|++|..... +. +..+++|++|++++|.....++. +..+++|+ +.+.+|. +..++ ....+|++|+
T Consensus 108 ~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLS 183 (347)
T ss_dssp TCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEE
T ss_pred CCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEE
Confidence 778888888887765443 33 77778888888887766666554 66677777 6666654 33333 2345678888
Q ss_pred ecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEec
Q 047103 665 LRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLM 744 (1095)
Q Consensus 665 L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~ 744 (1095)
+++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|.+.+ ++. +..+++|+.|+++
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--------~~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--------LSP-LANLSQLTWLEIG 251 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECC
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--------Ccc-hhcCCCCCEEECC
Confidence 88888888776 7788888888888887665544 7788888888888876554 233 6778888888888
Q ss_pred CCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCCcccCC
Q 047103 745 GCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSL 821 (1095)
Q Consensus 745 ~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~l 821 (1095)
+|.+... +.+..+++|+.|++++ +..+ ..+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|+.... .
T Consensus 252 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~ 327 (347)
T 4fmz_A 252 TNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI-R 327 (347)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC-G
T ss_pred CCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc-c
Confidence 8877653 4577888888886655 4445 3477888999999999988854 45678889999999999874433 3
Q ss_pred C-CCCCccceeecccCc
Q 047103 822 P-ELPPHLVMLDARNCK 837 (1095)
Q Consensus 822 p-~l~~sL~~L~l~~c~ 837 (1095)
| .-.++|+.|++++|+
T Consensus 328 ~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 PLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEESSSCC-
T ss_pred Chhhhhccceeehhhhc
Confidence 3 223788888888886
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.2e-23 Score=257.22 Aligned_cols=299 Identities=18% Similarity=0.174 Sum_probs=231.5
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC------CCCCCc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN------EDKAPK 568 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~------l~~l~~ 568 (1095)
.++++++....+.+.+|.++++|++|++++|.++.+|.. .+ .+|++|++++|.+.. +..+++
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----------~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-----------PM-ASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-----------CC-TTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-----------cc-ccCCEEECCCCCccccCchHhhcccCc
Confidence 468888888888899999999999999999999877653 22 378899998887654 357788
Q ss_pred ceeecccCCCCccccCCCCCCccc--cEeeccCCcc--CccccccccCCC------------------------------
Q 047103 569 LKYIDLNHSSNLTRIPEPSETPNL--DRMNLWNCTG--LALIPSYIQNFN------------------------------ 614 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p~~~~l~~L--~~L~L~~~~~--l~~lp~~i~~L~------------------------------ 614 (1095)
|++|+|++|.+.. ..+..+++| ++|+|++|.. .+..|..+..+.
T Consensus 148 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 148 LTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred ccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999886644 345555555 8888888876 455554444322
Q ss_pred ---------------------------------------------------CcceEeccCCCCCcccCCcc-----cccc
Q 047103 615 ---------------------------------------------------NLGNLSLEGCESLRCFPQNI-----HFVS 638 (1095)
Q Consensus 615 ---------------------------------------------------~L~~L~L~~c~~l~~lp~~i-----~~l~ 638 (1095)
+|++|++++|...+.+|..+ ..++
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 56666666665555677665 4455
Q ss_pred cce-e--------------------------eccCCcccCCC--ccccCCceEEEecCCCCcc-ccCccCCCCCCcEEec
Q 047103 639 SIK-I--------------------------NCSECVNLSEF--PRISGNVVELKLRHTPIEE-VPSSIDCLPDLETLEM 688 (1095)
Q Consensus 639 ~L~-l--------------------------~l~~c~~L~~~--p~~~~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L 688 (1095)
.|+ + .++++. +..+ +....+|++|++++|.++. +|..+..+++|+.|+|
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 544 2 222222 1111 2567789999999999996 7888999999999999
Q ss_pred cCCCCCC--ccccccCCCCCCCEEEccCccccccccccccccCc-cccCCCCCCEEEecCCCCCCCCCcccCCCcccccc
Q 047103 689 SNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS-SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFL 765 (1095)
Q Consensus 689 s~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L 765 (1095)
++|.+.+ .+|..+.++++|++|++++|.+.+. +|. .+..+++|+.|++++|.+.+..|..+. ++|+.|
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-------AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-------CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-------cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 9998776 5567789999999999999987763 333 367889999999999999887776654 688888
Q ss_pred ccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcc-cCCCCCCCEEeccCCCCc
Q 047103 766 SAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 766 ~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~L~L~~c~~l 817 (1095)
++++ +..+|..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+..
T Consensus 456 ~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 456 DLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 6654 778999988999999999999999999987 899999999999999753
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.2e-22 Score=254.28 Aligned_cols=287 Identities=20% Similarity=0.212 Sum_probs=174.9
Q ss_pred CcceEEcccCCCCC-----CCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCc-----cccc----cccCC
Q 047103 549 ELRYLHWHQYPLKN-----EDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLA-----LIPS----YIQNF 613 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~~-----l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~-----~lp~----~i~~L 613 (1095)
+|+.|++++|.+.. +..+++|++|+|++|.+....|. +..+++|++|++++|.... .+|. .+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 47777777775533 45667777777777766665553 6777777777777654332 2232 56677
Q ss_pred CCcceEeccCCCCCcccCCcccccccce-eeccCCcc-cCCCccc------cCCceEEEecCCCCccc-cCccCCCCCCc
Q 047103 614 NNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVN-LSEFPRI------SGNVVELKLRHTPIEEV-PSSIDCLPDLE 684 (1095)
Q Consensus 614 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~-L~~~p~~------~~~L~~L~L~~n~i~~l-p~~i~~l~~L~ 684 (1095)
++|++|++++|......|..+..+++|+ +.+++|.. +..++.. ..+|+.|++++|.++.+ |..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 7777777777766665566677777777 77666531 2222211 13567777777777755 44567777777
Q ss_pred EEeccCCCCCCccc-cccCCCCCCCEEEccCcccccccccc-------------------ccccCccccCCCCCCEEEec
Q 047103 685 TLEMSNCYSLKSLS-TNICKLKSLRSLHLAFCEQLGKEASN-------------------IKELPSSIENLEGLRELQLM 744 (1095)
Q Consensus 685 ~L~Ls~~~~l~~lp-~~l~~L~~L~~L~Ls~~~~~~~~~~~-------------------i~~lp~~l~~l~~L~~L~L~ 744 (1095)
.|+|++|.+.+.+| ..+.++++|++|++++|.+.+..+.. +..+|..+.++++|+.|+|+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 77777777665555 45666777777777776654422211 12345556666677777777
Q ss_pred CCCCCCCCCcccCCCccccccccCC--Cccc-----C----cccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEecc
Q 047103 745 GCTKLGSLPESLGNLKALEFLSAAG--IIKI-----P----RDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLF 812 (1095)
Q Consensus 745 ~~~~~~~lp~~l~~L~~L~~L~l~~--~~~l-----p----~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~ 812 (1095)
+|.+.+..|..+.++++|+.|++++ +..+ | ..+..+++|+.|+|++|+++.+|. .+.++++|+.|+|+
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 7666665556666666666665544 2222 1 125666677777777777766665 35666777777776
Q ss_pred CCCCcccCCCC-C---CCccceeecccCc
Q 047103 813 DCIMLQSSLPE-L---PPHLVMLDARNCK 837 (1095)
Q Consensus 813 ~c~~l~~~lp~-l---~~sL~~L~l~~c~ 837 (1095)
+|... . +|. . .++|+.|++++|.
T Consensus 569 ~N~l~-~-l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 569 LNNLN-T-LPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp SSCCC-C-CCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCC-c-CCHhHhCCCCCCCEEECCCCc
Confidence 66433 3 332 2 1566677776663
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=9.6e-24 Score=257.33 Aligned_cols=329 Identities=17% Similarity=0.197 Sum_probs=215.2
Q ss_pred cccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcce
Q 047103 496 LDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKLK 570 (1095)
Q Consensus 496 ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L~ 570 (1095)
.|.+.+....++...+ ++|+.|++++|.++.++. ..+..++ .|++|++++|.+.. +..+++|+
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~--------~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGH--------GDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECS--------STTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCCCccccccccCC---CCccEEECcCCccCccCh--------hhhhcCC-cccEEECCCCCcCccChhhccccccCC
Confidence 3555555556666544 689999999999876543 3344454 89999999998744 57889999
Q ss_pred eecccCCCCccccCC-CCCCccccEeeccCCccCc-cccccccCCCCcceEeccCCCCCcccC-Ccccccccce-eeccC
Q 047103 571 YIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLA-LIPSYIQNFNNLGNLSLEGCESLRCFP-QNIHFVSSIK-INCSE 646 (1095)
Q Consensus 571 ~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~-l~l~~ 646 (1095)
+|+|++|.+....|. ++.+++|++|+|++|.... ..|..++++++|++|++++|..++.+| ..+..+++|+ +.+++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999987766665 8999999999999998776 467889999999999999998777776 5788899999 88887
Q ss_pred CcccCCCcccc---CCceEEEecCCCCccccCcc-CCCCCCcEEeccCCCCCCcc-------------------------
Q 047103 647 CVNLSEFPRIS---GNVVELKLRHTPIEEVPSSI-DCLPDLETLEMSNCYSLKSL------------------------- 697 (1095)
Q Consensus 647 c~~L~~~p~~~---~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~Ls~~~~l~~l------------------------- 697 (1095)
+..-...|..+ .+|++|++++|.+..+|..+ ..+++|++|++++|.+.+..
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 76444444433 34566677777666665543 45666677776666554421
Q ss_pred ------ccccCCCCCCCEEEccCcccccccc-------------------------------------------------
Q 047103 698 ------STNICKLKSLRSLHLAFCEQLGKEA------------------------------------------------- 722 (1095)
Q Consensus 698 ------p~~l~~L~~L~~L~Ls~~~~~~~~~------------------------------------------------- 722 (1095)
+..+..+++|+.|++++|...+...
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 1111223344444444443322100
Q ss_pred --ccccccCccc-cCCCCCCEEEecCCCCCCCCCc---ccCCCccccccccCC--CcccC---cccCCCCCCCeeeCCCC
Q 047103 723 --SNIKELPSSI-ENLEGLRELQLMGCTKLGSLPE---SLGNLKALEFLSAAG--IIKIP---RDIGCLSSLVELDLSRN 791 (1095)
Q Consensus 723 --~~i~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~---~l~~L~~L~~L~l~~--~~~lp---~~l~~l~~L~~L~Ls~n 791 (1095)
+.+..+|..+ .++++|+.|++++|.+.+.+|. .++.+++|+.|++++ +..++ ..+..+++|+.|+|++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 0122244443 3566777777777766655432 356666677665544 33333 23566777777777777
Q ss_pred CCcccCcccCCCCCCCEEeccCCCCcccCCCCCCCccceeecccCc
Q 047103 792 NFESLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 792 ~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~ 837 (1095)
+++.+|..+..+++|++|++++|.. ......+|++|+.|++++|.
T Consensus 398 ~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNN 442 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEECTTSCC-SCCCTTSCTTCSEEECCSSC
T ss_pred CCccCChhhcccccccEEECCCCCc-ccccchhcCCceEEECCCCC
Confidence 7777777677777777777777753 33122345677777777764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=7.5e-23 Score=234.17 Aligned_cols=288 Identities=16% Similarity=0.189 Sum_probs=231.3
Q ss_pred cccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceee
Q 047103 496 LDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYI 572 (1095)
Q Consensus 496 ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L 572 (1095)
++++++....+. .|..+++|+.|++++|.++.++. +..++ .|++|++++|.+..+ ..+++|++|
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~----------~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP----------LSNLV-KLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG----------GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCCccccchh----------hhcCC-cCCEEEccCCcccCchHHcCCCcCCEE
Confidence 445555554443 48899999999999998876543 33343 899999999987665 678999999
Q ss_pred cccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccC
Q 047103 573 DLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLS 651 (1095)
Q Consensus 573 ~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~ 651 (1095)
+|++|.+. .++.+..+++|++|++++|.....++. +..+++|++|++++|.... ++. +..+++|+ +.+++|. +.
T Consensus 116 ~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~-l~ 190 (347)
T 4fmz_A 116 YLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ-IE 190 (347)
T ss_dssp ECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC-CC
T ss_pred ECcCCccc-CchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc-cc
Confidence 99999654 455589999999999999987776655 8999999999999976544 433 77899999 8887764 45
Q ss_pred CCcc--ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC
Q 047103 652 EFPR--ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP 729 (1095)
Q Consensus 652 ~~p~--~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp 729 (1095)
.++. ...+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ +
T Consensus 191 ~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--------~- 258 (347)
T 4fmz_A 191 DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--------I- 258 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--------C-
T ss_pred ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC--------C-
Confidence 5543 44678999999999998877 8899999999999998765444 8899999999999987654 2
Q ss_pred ccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCC--cc-cCcccCCCCCCCeeeCCCCCCcccCcccCCCCCC
Q 047103 730 SSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGI--IK-IPRDIGCLSSLVELDLSRNNFESLPSGISHLSRL 806 (1095)
Q Consensus 730 ~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~--~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L 806 (1095)
..+..+++|+.|++++|.+.+. +.+..+++|+.|++++. .. .|..+..+++|+.|+|++|.++.++. +..+++|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 3478899999999999987764 45889999999977663 33 45668899999999999999998876 8899999
Q ss_pred CEEeccCCCC
Q 047103 807 KWLHLFDCIM 816 (1095)
Q Consensus 807 ~~L~L~~c~~ 816 (1095)
+.|++++|+.
T Consensus 336 ~~L~l~~N~i 345 (347)
T 4fmz_A 336 DSADFANQVI 345 (347)
T ss_dssp SEESSSCC--
T ss_pred ceeehhhhcc
Confidence 9999999974
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.4e-22 Score=236.87 Aligned_cols=301 Identities=24% Similarity=0.283 Sum_probs=226.2
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCCC-Ccceeec
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDKA-PKLKYID 573 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~l-~~L~~L~ 573 (1095)
.++++++....++. -.++|+.|++++|.++.+|. .+..|++|++++|.+..+..+ ++|++|+
T Consensus 75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~-------------~~~~L~~L~l~~n~l~~l~~~~~~L~~L~ 137 (454)
T 1jl5_A 75 ELELNNLGLSSLPE----LPPHLESLVASCNSLTELPE-------------LPQSLKSLLVDNNNLKALSDLPPLLEYLG 137 (454)
T ss_dssp EEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCC-------------CCTTCCEEECCSSCCSCCCSCCTTCCEEE
T ss_pred EEEecCCccccCCC----CcCCCCEEEccCCcCCcccc-------------ccCCCcEEECCCCccCcccCCCCCCCEEE
Confidence 35666665444433 13689999999998876553 125899999999999888666 6999999
Q ss_pred ccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCC
Q 047103 574 LNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSE 652 (1095)
Q Consensus 574 Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~ 652 (1095)
|++|.+.. +|.+..+++|++|++++|...+ +|..+ .+|++|++++|.. ..+| .+..+++|+ +.+.+| .+..
T Consensus 138 L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N-~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNN-SLKK 209 (454)
T ss_dssp CCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSS
T ss_pred CcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEECCCC-cCCc
Confidence 99997665 8889999999999999997654 66543 5999999999754 4577 588899999 877775 5677
Q ss_pred CccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccc
Q 047103 653 FPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSI 732 (1095)
Q Consensus 653 ~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l 732 (1095)
+|....+|++|++++|.++.+|. ++.+++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|..
T Consensus 210 l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~--------l~~~- 275 (454)
T 1jl5_A 210 LPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD--------LPEL- 275 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC--------CCCC-
T ss_pred CCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc--------cCcc-
Confidence 88888899999999999999995 8999999999999987654 5543 5899999999987654 3332
Q ss_pred cCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEe
Q 047103 733 ENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLH 810 (1095)
Q Consensus 733 ~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~ 810 (1095)
+++|+.|++++|.+.+ +|.. .++|+.|++++ +..++. ..++|+.|++++|+++.+|.. +++|+.|+
T Consensus 276 --~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLI 343 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred --cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEE
Confidence 3789999999988766 2211 14666665544 333332 125788888888888887764 57888888
Q ss_pred ccCCCCcccCCCCCCCccceeecccCccCcccCCCCcch
Q 047103 811 LFDCIMLQSSLPELPPHLVMLDARNCKRLQSLPELPSCL 849 (1095)
Q Consensus 811 L~~c~~l~~~lp~l~~sL~~L~l~~c~~L~~lp~~~~~l 849 (1095)
+++|. ++. +|..+++|+.|++++|. +..+|..|..+
T Consensus 344 L~~N~-l~~-lp~~l~~L~~L~L~~N~-l~~l~~ip~~l 379 (454)
T 1jl5_A 344 ASFNH-LAE-VPELPQNLKQLHVEYNP-LREFPDIPESV 379 (454)
T ss_dssp CCSSC-CSC-CCCCCTTCCEEECCSSC-CSSCCCCCTTC
T ss_pred CCCCc-ccc-ccchhhhccEEECCCCC-CCcCCCChHHH
Confidence 88885 344 66677888888888876 45555555444
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=5.8e-24 Score=239.77 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=193.4
Q ss_pred CcceeecccCCCCcc--ccCC-CCCCccccEeeccC-CccCccccccccCCCCcceEeccCCCCCcccCCccccccccee
Q 047103 567 PKLKYIDLNHSSNLT--RIPE-PSETPNLDRMNLWN-CTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKI 642 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~--~~p~-~~~l~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l 642 (1095)
.+++.|+|++|.+.. .+|. +..+++|++|+|++ |...+.+|..++++++|++|+|++|...+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~- 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV- 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC-
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC-
Confidence 468888888887776 5554 78888999999985 777778888888899999999988776667777776665554
Q ss_pred eccCCcccCCCccccCCceEEEecCCCCc-cccCccCCCCCCcEEeccCCCCCCccccccCCCC-CCCEEEccCcccccc
Q 047103 643 NCSECVNLSEFPRISGNVVELKLRHTPIE-EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLK-SLRSLHLAFCEQLGK 720 (1095)
Q Consensus 643 ~l~~c~~L~~~p~~~~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~-~L~~L~Ls~~~~~~~ 720 (1095)
+|+|++|.++ .+|..+..+++|++|+|++|.+.+.+|..+..++ +|++|++++|.+.+
T Consensus 129 -------------------~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~- 188 (313)
T 1ogq_A 129 -------------------TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG- 188 (313)
T ss_dssp -------------------EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-
T ss_pred -------------------EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-
Confidence 7777777777 6777778888888888888877777888888877 88888888877665
Q ss_pred ccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCc-ccC
Q 047103 721 EASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFE-SLP 797 (1095)
Q Consensus 721 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp 797 (1095)
.+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++ +...+..+..+++|++|+|++|.++ .+|
T Consensus 189 ------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 189 ------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp ------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred ------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC
Confidence 3455566665 88888888888777777788888888886665 3334445788899999999999998 788
Q ss_pred cccCCCCCCCEEeccCCCCcccCCCCC--CCccceeecccCccCcccC
Q 047103 798 SGISHLSRLKWLHLFDCIMLQSSLPEL--PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 798 ~~l~~L~~L~~L~L~~c~~l~~~lp~l--~~sL~~L~l~~c~~L~~lp 843 (1095)
..+..+++|+.|+|++|+.... +|.. .++|+.|++.+|+.+...|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEE-CCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred hHHhcCcCCCEEECcCCccccc-CCCCccccccChHHhcCCCCccCCC
Confidence 8999999999999999976655 7765 3688889999998766544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.6e-22 Score=236.87 Aligned_cols=289 Identities=18% Similarity=0.192 Sum_probs=163.2
Q ss_pred cccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC--CCCCcceeec
Q 047103 496 LDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE--DKAPKLKYID 573 (1095)
Q Consensus 496 ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--~~l~~L~~L~ 573 (1095)
+|++++....++ .|..+++|+.|++++|.++.++ +..++ .|++|++++|.+..+ ..+++|++|+
T Consensus 47 L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~-----------~~~l~-~L~~L~Ls~N~l~~~~~~~l~~L~~L~ 112 (457)
T 3bz5_A 47 LDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD-----------LSQNT-NLTYLACDSNKLTNLDVTPLTKLTYLN 112 (457)
T ss_dssp EECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC-----------CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred EEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc-----------cccCC-CCCEEECcCCCCceeecCCCCcCCEEE
Confidence 455555544442 5677777777777777765442 22222 677777777765543 5666777777
Q ss_pred ccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCC
Q 047103 574 LNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSE 652 (1095)
Q Consensus 574 Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~ 652 (1095)
|++|.+.. +| ++.+++|++|++++|...+ ++ ++.+++|++|++++|..++.++ +..+++|+ +.++++ .++.
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITE 184 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCC
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccce
Confidence 77775443 33 6677777777777766554 22 6667777777777766665552 55566666 555544 3444
Q ss_pred Cc-cccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc
Q 047103 653 FP-RISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS 731 (1095)
Q Consensus 653 ~p-~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~ 731 (1095)
+| ....+|+.|++++|.++.++ ++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+..+..+..+..-
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 44 12345666667776666653 5666667777777666554 44 5666667777776666554211111110000
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCc---ccCc--------ccCCCCCCCeeeCCCCCCcccCccc
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGII---KIPR--------DIGCLSSLVELDLSRNNFESLPSGI 800 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~---~lp~--------~l~~l~~L~~L~Ls~n~l~~lp~~l 800 (1095)
-....+|+.|++++|...+.+| ++.+++|+.|++++.. .+|. .+..+++|+.|+|++|+++.++ +
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l 335 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--V 335 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--C
T ss_pred eccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--c
Confidence 0011144444555555555444 3455666666554432 1221 1345556666666666666653 6
Q ss_pred CCCCCCCEEeccCCC
Q 047103 801 SHLSRLKWLHLFDCI 815 (1095)
Q Consensus 801 ~~L~~L~~L~L~~c~ 815 (1095)
..+++|+.|++++|+
T Consensus 336 ~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCTTCSEEECCSSC
T ss_pred ccCCcCcEEECCCCC
Confidence 666666666666664
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=251.98 Aligned_cols=331 Identities=19% Similarity=0.163 Sum_probs=237.8
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L 569 (1095)
.+|++++....+.+.+|.++++|++|++++|.++.++. ..+..++ +|++|+++++.+.. +..+++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--------GAFSGLS-SLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------TTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH--------hhhcCcc-ccccccccccccccCCCccccccccc
Confidence 46778887778888889999999999999998776543 2333343 77888887776654 4567778
Q ss_pred eeecccCCCCcc-ccCC-CCCCccccEeeccCCccCccccccccCCCCc----ceEeccCCCCCc---------------
Q 047103 570 KYIDLNHSSNLT-RIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNL----GNLSLEGCESLR--------------- 628 (1095)
Q Consensus 570 ~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L----~~L~L~~c~~l~--------------- 628 (1095)
++|+|++|.+.. .+|. +.++++|++|++++|......+..++.+++| +.|++++|....
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 888888876554 3453 6777788888887776554444444444444 344444432211
Q ss_pred --------------------------------------------------------------------------------
Q 047103 629 -------------------------------------------------------------------------------- 628 (1095)
Q Consensus 629 -------------------------------------------------------------------------------- 628 (1095)
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence
Q ss_pred ---------ccCCcccccccce-eeccCCcccCCCc-----------------------cccCCceEEEecCCCCccc--
Q 047103 629 ---------CFPQNIHFVSSIK-INCSECVNLSEFP-----------------------RISGNVVELKLRHTPIEEV-- 673 (1095)
Q Consensus 629 ---------~lp~~i~~l~~L~-l~l~~c~~L~~~p-----------------------~~~~~L~~L~L~~n~i~~l-- 673 (1095)
.+|..+..+ +|+ +.+.+|. +..+| ....+|+.|++++|.++.+
T Consensus 287 L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 287 FSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred EEecCccchhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 223222222 233 2222221 11222 2345678888888888865
Q ss_pred -cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCC
Q 047103 674 -PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSL 752 (1095)
Q Consensus 674 -p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l 752 (1095)
|..+..+++|++|++++|...+..+ .+..+++|++|++++|.+.+..+ +..+.++++|+.|++++|.+.+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTT------SCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccc------hhhhhcCCCCCEEeCcCCcccccc
Confidence 5678899999999999988665544 49999999999999987765321 135788999999999999999999
Q ss_pred CcccCCCccccccccCCC--c--ccCcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCCcccCCCCC---
Q 047103 753 PESLGNLKALEFLSAAGI--I--KIPRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSLPEL--- 824 (1095)
Q Consensus 753 p~~l~~L~~L~~L~l~~~--~--~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~lp~l--- 824 (1095)
|..+.++++|+.|++.+. . .+|..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|..... .|..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhc
Confidence 999999999999988774 2 5899999999999999999999976 77899999999999999965433 4432
Q ss_pred CCccceeecccCccCcccCC
Q 047103 825 PPHLVMLDARNCKRLQSLPE 844 (1095)
Q Consensus 825 ~~sL~~L~l~~c~~L~~lp~ 844 (1095)
.++|+.|++++|+.-...|.
T Consensus 517 l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcEEEecCCcccCCCcc
Confidence 37899999999986555543
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2.2e-22 Score=240.01 Aligned_cols=305 Identities=19% Similarity=0.237 Sum_probs=211.7
Q ss_pred ccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceeec
Q 047103 497 DLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYID 573 (1095)
Q Consensus 497 dls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~ 573 (1095)
+++++....++ .|..+++|+.|++++|.++.++. +..++ .|++|+++++.+..+ ..+++|++|+
T Consensus 52 ~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~----------~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 52 QADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP----------LKNLT-KLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG----------GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ecCCCCCccCc--chhhhcCCCEEECCCCccCCchh----------hhccc-cCCEEECCCCccccChhhcCCCCCCEEE
Confidence 34444444443 37778888888888888765542 23333 788888888876654 6778888888
Q ss_pred ccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCC
Q 047103 574 LNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSE 652 (1095)
Q Consensus 574 Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~ 652 (1095)
|++|.+. .++.+..+++|++|++++|.... ++ .+..+++|++|++++ .+..++. +..+++|+ +.+++|. +..
T Consensus 119 L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 119 LFNNQIT-DIDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp CCSSCCC-CCGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred CCCCCCC-CChHHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCc-CCC
Confidence 8888544 34458888888888888876544 33 477888888888863 2333333 66778888 7777654 444
Q ss_pred Ccc--ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc
Q 047103 653 FPR--ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS 730 (1095)
Q Consensus 653 ~p~--~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~ 730 (1095)
++. ...+|+.|++++|.+..++. ++.+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+. +.
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~--------~~ 260 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL--------AP 260 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--------GG
T ss_pred ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc--------hh
Confidence 443 23577888888888887665 6778888888888876554 3 3467788888888888766542 22
Q ss_pred cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCE
Q 047103 731 SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKW 808 (1095)
Q Consensus 731 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~ 808 (1095)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++ +..++. +..+++|+.|+|++|+++.++. +..+++|+.
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCE
Confidence 6677888888888887766444 77788888886654 444444 6778888888888888887665 677888888
Q ss_pred EeccCCCCcccCCCCC--CCccceeecccCccC
Q 047103 809 LHLFDCIMLQSSLPEL--PPHLVMLDARNCKRL 839 (1095)
Q Consensus 809 L~L~~c~~l~~~lp~l--~~sL~~L~l~~c~~L 839 (1095)
|++++|+. .. ++.+ .++|+.|++++|...
T Consensus 336 L~l~~n~l-~~-~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 336 LFFYNNKV-SD-VSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSSCC-CC-CGGGTTCTTCCEEECCSSCCC
T ss_pred eECCCCcc-CC-chhhccCCCCCEEeCCCCccC
Confidence 88888853 33 3433 267888888888643
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=239.02 Aligned_cols=285 Identities=19% Similarity=0.190 Sum_probs=221.0
Q ss_pred ceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcceeecccCCCCccccCC-CCCCcc
Q 047103 518 RLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKLKYIDLNHSSNLTRIPE-PSETPN 591 (1095)
Q Consensus 518 r~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~ 591 (1095)
+.++.+++.++.+|. .+|..++.|++++|.+.. +..+++|++|+|++|.+....|. |.++++
T Consensus 14 ~~v~c~~~~l~~ip~------------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE------------GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp TEEECCSCCCSSCCS------------CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCcCCC------------CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 345555666555543 245578888888887654 36678888888888876665554 788888
Q ss_pred ccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCc
Q 047103 592 LDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIE 671 (1095)
Q Consensus 592 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~ 671 (1095)
|++|+|++|......+..|.++++|++|+|++|......|..+..++ +|++|+|++|.++
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------~L~~L~l~~n~l~ 141 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--------------------NLKSLEVGDNDLV 141 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--------------------TCCEEEECCTTCC
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--------------------cCCEEECCCCccc
Confidence 88888888776555455677888888888888766655555555444 4568999999998
Q ss_pred ccc-CccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCC
Q 047103 672 EVP-SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLG 750 (1095)
Q Consensus 672 ~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 750 (1095)
.++ ..+..+++|+.|+|++|.+.+..+..+.++++|+.|++++|.+.+. .+..+..+++|+.|++++|...+
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-------RDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-------CTTCSCSCTTCCEEEEECCTTCC
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-------ChhhcccCcccceeeCCCCcccc
Confidence 764 5789999999999999988777677799999999999999877652 23457889999999999999999
Q ss_pred CCCcccCCCccccccccCC--CcccCc-ccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCCCcccCCCCC--
Q 047103 751 SLPESLGNLKALEFLSAAG--IIKIPR-DIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCIMLQSSLPEL-- 824 (1095)
Q Consensus 751 ~lp~~l~~L~~L~~L~l~~--~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~~l~~~lp~l-- 824 (1095)
.+|.......+|+.|++++ +..+|. .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|..... .|..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 293 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFR 293 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE-CTTTBT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE-CHHHhc
Confidence 9988887778999996654 667774 68899999999999999998765 588999999999999976544 4432
Q ss_pred -CCccceeecccCccCcccC
Q 047103 825 -PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 825 -~~sL~~L~l~~c~~L~~lp 843 (1095)
.++|+.|++++|. ++.+|
T Consensus 294 ~l~~L~~L~L~~N~-l~~~~ 312 (477)
T 2id5_A 294 GLNYLRVLNVSGNQ-LTTLE 312 (477)
T ss_dssp TCTTCCEEECCSSC-CSCCC
T ss_pred CcccCCEEECCCCc-CceeC
Confidence 2789999999995 55554
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=6.7e-22 Score=235.87 Aligned_cols=289 Identities=20% Similarity=0.269 Sum_probs=164.6
Q ss_pred CCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceeecccCCCCccccCCCCCCc
Q 047103 514 MPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYIDLNHSSNLTRIPEPSETP 590 (1095)
Q Consensus 514 m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~Ls~n~~l~~~p~~~~l~ 590 (1095)
+++|+.|++.++.++.++. +..++ .|++|++++|.+..+ ..+++|++|+|++|.+....+ +..++
T Consensus 45 l~~l~~L~l~~~~i~~l~~----------~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG----------VEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT----------GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hccccEEecCCCCCccCcc----------hhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCC
Confidence 4566666666665544331 22232 666666666665543 456666667776665444333 66666
Q ss_pred cccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCcc--ccCCceEEEecC
Q 047103 591 NLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPR--ISGNVVELKLRH 667 (1095)
Q Consensus 591 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~--~~~~L~~L~L~~ 667 (1095)
+|++|+|++|..... +. +.++++|++|++++|. +..+|. +..+++|+ +.+. +.+..++. ...+|+.|++++
T Consensus 113 ~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~--~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 113 NLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEE--ESCCCCGGGTTCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecC--CcccCchhhccCCCCCEEECcC
Confidence 677777766654433 22 6666667777766654 233332 55566666 5443 22332222 234566666666
Q ss_pred CCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCC
Q 047103 668 TPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCT 747 (1095)
Q Consensus 668 n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~ 747 (1095)
|.++.++. +..+++|+.|++++|...+..| ++.+++|++|++++|.+.+ + ..+..+++|+.|++++|.
T Consensus 187 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 187 NKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--------I-GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp SCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--------C-GGGGGCTTCSEEECCSSC
T ss_pred CcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--------c-hhhhcCCCCCEEECCCCc
Confidence 66666543 5666667777776666555444 5556667777776665433 1 235566666777776666
Q ss_pred CCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCC-CC
Q 047103 748 KLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLP-EL 824 (1095)
Q Consensus 748 ~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp-~l 824 (1095)
+.+..| +..+++|+.|++++ +..++. +..+++|+.|+|++|.++.++. +..+++|+.|+|++|..... .| ..
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~ 329 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSS 329 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC-GGGGG
T ss_pred cccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc-hhhcc
Confidence 655443 56666666665444 334443 5666667777777666666554 56666677777766643322 22 12
Q ss_pred CCccceeecccCc
Q 047103 825 PPHLVMLDARNCK 837 (1095)
Q Consensus 825 ~~sL~~L~l~~c~ 837 (1095)
.++|+.|++++|+
T Consensus 330 l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 330 LTKLQRLFFYNNK 342 (466)
T ss_dssp CTTCCEEECCSSC
T ss_pred CccCCEeECCCCc
Confidence 3566666666664
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.8e-21 Score=230.87 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=226.6
Q ss_pred ccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC--CCCCcceeecccCCCCccccCC
Q 047103 508 CGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE--DKAPKLKYIDLNHSSNLTRIPE 585 (1095)
Q Consensus 508 ~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--~~l~~L~~L~Ls~n~~l~~~p~ 585 (1095)
+..+.++++|+.|++++|.++.+| ++..++ .|++|++++|.+..+ ..+++|++|+|++|.+.. +|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~----------~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT----------GIEKLT-GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT----------TGGGCT-TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccChhHcCCCCEEEccCCCcccCh----------hhcccC-CCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee-
Confidence 346788999999999999987553 233444 899999999987764 788999999999997655 44
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCc-cccCCceEE
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFP-RISGNVVEL 663 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p-~~~~~L~~L 663 (1095)
++.+++|++|+|++|.... +| ++.+++|++|++++|.... +| ++.+++|+ +.+.+|..+..++ ....+|+.|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 8999999999999997665 44 8999999999999976554 54 77899999 9999987777664 234689999
Q ss_pred EecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEe
Q 047103 664 KLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQL 743 (1095)
Q Consensus 664 ~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L 743 (1095)
++++|.++.+| +..+++|+.|++++|.+.+. .++.+++|+.|++++|.+.+ +| +..+++|+.|++
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--------ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--------ID--VTPLTQLTYFDC 240 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--------CC--CTTCTTCSEEEC
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--------cC--ccccCCCCEEEe
Confidence 99999999998 88999999999999987664 38899999999999987654 44 778999999999
Q ss_pred cCCCCCCCCCcccCCCc-------cccccccCCCc---ccCcccCCCCCCCeeeCCCCCCc-ccCc--------ccCCCC
Q 047103 744 MGCTKLGSLPESLGNLK-------ALEFLSAAGII---KIPRDIGCLSSLVELDLSRNNFE-SLPS--------GISHLS 804 (1095)
Q Consensus 744 ~~~~~~~~lp~~l~~L~-------~L~~L~l~~~~---~lp~~l~~l~~L~~L~Ls~n~l~-~lp~--------~l~~L~ 804 (1095)
++|.+.+..+..+.++. +|+.|++++.. .+| ++.+++|+.|+|++|.+. .+|. .+.+++
T Consensus 241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 99998886555454444 34445444422 233 467788999999888643 3332 255667
Q ss_pred CCCEEeccCCCCcccCCC-CCCCccceeecccCccCcccC
Q 047103 805 RLKWLHLFDCIMLQSSLP-ELPPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 805 ~L~~L~L~~c~~l~~~lp-~l~~sL~~L~l~~c~~L~~lp 843 (1095)
+|+.|++++|.... ++ .-.++|+.|++++|. ++.++
T Consensus 319 ~L~~L~L~~N~l~~--l~l~~l~~L~~L~l~~N~-l~~l~ 355 (457)
T 3bz5_A 319 KLVYLYLNNTELTE--LDVSHNTKLKSLSCVNAH-IQDFS 355 (457)
T ss_dssp TCCEEECTTCCCSC--CCCTTCTTCSEEECCSSC-CCBCT
T ss_pred cCCEEECCCCcccc--cccccCCcCcEEECCCCC-CCCcc
Confidence 88888888775433 32 112678888887775 44443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.7e-22 Score=245.55 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=243.6
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L 569 (1095)
.++++++....+++..|.++++|+.|++++|.++.++. ..+..++ .|++|++++|.+..+ ..+++|
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh--------HHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 35666777778888899999999999999999876543 2344444 899999999987654 678999
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCC
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSEC 647 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c 647 (1095)
++|+|++|.+....+. |+.+++|++|+|++|...+..|..++++++|++|+|++|.... +| +..+++|+ +.++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccC
Confidence 9999999976655444 6899999999999999888888899999999999999976544 33 45577888 666654
Q ss_pred cccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
.+..++ ...+|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+.
T Consensus 203 -~l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~------- 269 (597)
T 3oja_B 203 -LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI------- 269 (597)
T ss_dssp -CCSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-------
T ss_pred -cccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-------
Confidence 455443 3457999999999999888765 3799999999998776 36788999999999999987763
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCC
Q 047103 728 LPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSR 805 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~ 805 (1095)
.|..+.++++|+.|+|++|.+.+ +|..+..+++|+.|++++ +..+|..+..+++|+.|+|++|.++.+| +..+++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~ 346 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 346 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCC
Confidence 46678899999999999998876 577778899999997655 6678988999999999999999999887 788999
Q ss_pred CCEEeccCCCCc
Q 047103 806 LKWLHLFDCIML 817 (1095)
Q Consensus 806 L~~L~L~~c~~l 817 (1095)
|+.|+|++|+..
T Consensus 347 L~~L~l~~N~~~ 358 (597)
T 3oja_B 347 LKNLTLSHNDWD 358 (597)
T ss_dssp CSEEECCSSCEE
T ss_pred CCEEEeeCCCCC
Confidence 999999999753
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=5.2e-22 Score=231.16 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=241.0
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L 569 (1095)
.++++++....+++..|..+++|+.|++++|.++.++. ..+..++ .|++|++++|.+..+ ..+++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--------hhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 35667777777888889999999999999999876543 2344444 899999999987654 678999
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCC
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSEC 647 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c 647 (1095)
++|+|++|.+....+. +..+++|++|+|++|......|..+..+++|++|++++|.... ++ +..+++|+ +.++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccc
Confidence 9999999976644444 6899999999999999888778889999999999999976544 33 55677888 666654
Q ss_pred cccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
.+..++ ...+|++|++++|.+..+|..+ .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 197 -~l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~------- 263 (390)
T 3o6n_A 197 -LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI------- 263 (390)
T ss_dssp -CCSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-------
T ss_pred -cccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-------
Confidence 454443 3357999999999999988754 58999999999987654 5688999999999999977653
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCC
Q 047103 728 LPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSR 805 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~ 805 (1095)
.|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++ +..+|..+..+++|+.|+|++|.++.+| +..+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~ 340 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhcc
Confidence 35668899999999999998765 566678899999997655 6678888889999999999999999887 788999
Q ss_pred CCEEeccCCCCc
Q 047103 806 LKWLHLFDCIML 817 (1095)
Q Consensus 806 L~~L~L~~c~~l 817 (1095)
|+.|+|++|+..
T Consensus 341 L~~L~l~~N~~~ 352 (390)
T 3o6n_A 341 LKNLTLSHNDWD 352 (390)
T ss_dssp CSEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 999999999754
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.1e-21 Score=243.02 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=104.3
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-----CCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-----DKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-----~~l~~L 569 (1095)
.+|++.+....+.+.+|.++++|++|++++|.|+.++. ..+..++ +|++|++++|.++.+ ..+++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~--------~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------TTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh--------hHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 58899999999999999999999999999999887654 2344455 899999999987754 678999
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCc-cccccccCCCCcceEeccCCCCCcc
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLA-LIPSYIQNFNNLGNLSLEGCESLRC 629 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~c~~l~~ 629 (1095)
++|+|++|.+....+. |+++++|++|+|++|.... .+|..++.+++|++|+|++|.....
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9999999976654443 8999999999999998755 4678889999999999998765443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=4e-23 Score=232.94 Aligned_cols=226 Identities=17% Similarity=0.233 Sum_probs=176.4
Q ss_pred CCCCcceeecccC-CCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce
Q 047103 564 DKAPKLKYIDLNH-SSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK 641 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~-n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 641 (1095)
..+++|++|+|++ |.+...+|. +..+++|++|+|++|...+.+|..+.++++|++|+|++|.....+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 4567888888884 766666774 78888999999998888878888888899999999988776667777666555544
Q ss_pred eeccCCcccCCCccccCCceEEEecCCCCc-cccCccCCCC-CCcEEeccCCCCCCccccccCCCCCCCEEEccCccccc
Q 047103 642 INCSECVNLSEFPRISGNVVELKLRHTPIE-EVPSSIDCLP-DLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 642 l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~-~lp~~i~~l~-~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~ 719 (1095)
+|++++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+..++ |++|++++|.+.+
T Consensus 153 --------------------~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 153 --------------------GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp --------------------EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred --------------------eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 7777777777 6777777776 788888888877777777777776 8888888876655
Q ss_pred cccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Cc-ccCcccCCCCCCCeeeCCCCCCc-c
Q 047103 720 KEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--II-KIPRDIGCLSSLVELDLSRNNFE-S 795 (1095)
Q Consensus 720 ~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~-~lp~~l~~l~~L~~L~Ls~n~l~-~ 795 (1095)
..|..+..+++|+.|+|++|.+.+.+|. +..+++|+.|++++ +. .+|..+..+++|+.|+|++|.++ .
T Consensus 212 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 212 -------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp -------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred -------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 2445567778888888888877766665 67777888876655 33 57888899999999999999999 6
Q ss_pred cCcccCCCCCCCEEeccCCCCccc
Q 047103 796 LPSGISHLSRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 796 lp~~l~~L~~L~~L~L~~c~~l~~ 819 (1095)
+|.. ..+++|+.|++++|+.+..
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCC-ccccccChHHhcCCCCccC
Confidence 7765 8899999999999987765
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.1e-21 Score=230.09 Aligned_cols=285 Identities=25% Similarity=0.307 Sum_probs=104.9
Q ss_pred CccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---CCCCcceeecccCCCCccccCCCCCCcc
Q 047103 515 PNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---DKAPKLKYIDLNHSSNLTRIPEPSETPN 591 (1095)
Q Consensus 515 ~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 591 (1095)
++|+.|++++|.++.++. +|..|++|++++|.+..+ ..+++|++|++++|.+.. +|.. .++
T Consensus 111 ~~L~~L~l~~n~l~~l~~-------------~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~--~~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD-------------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL--PPS 174 (454)
T ss_dssp TTCCEEECCSSCCSCCCS-------------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCC--CTT
T ss_pred CCCcEEECCCCccCcccC-------------CCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCC--ccc
Confidence 455566665555543321 123455555555443322 344455555555553322 3321 235
Q ss_pred ccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCccc--cCCceEEEecCC
Q 047103 592 LDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPRI--SGNVVELKLRHT 668 (1095)
Q Consensus 592 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~--~~~L~~L~L~~n 668 (1095)
|++|++++|...+ +| .++++++|++|++++|... .+|... .+|+ +.+++| .+..+|.. ..+|+.|++++|
T Consensus 175 L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred ccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCC
Confidence 5555555544333 33 3455555555555554322 233321 2333 333333 23334321 223455555555
Q ss_pred CCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCC
Q 047103 669 PIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 669 ~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 748 (1095)
.++.+|.. +++|+.|++++|.+.+ +|.. +++|++|++++|.+.+. ..+| ++|+.|++++|.+
T Consensus 248 ~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-----~~~~------~~L~~L~l~~N~l 309 (454)
T 1jl5_A 248 LLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-----SELP------PNLYYLNASSNEI 309 (454)
T ss_dssp CCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-----SCCC------TTCCEEECCSSCC
T ss_pred cCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-----cCcC------CcCCEEECcCCcC
Confidence 55544432 2445555555544332 3322 24455555555443320 0111 3444444444443
Q ss_pred CCCCCcccCCC-ccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcc--c----
Q 047103 749 LGSLPESLGNL-KALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQ--S---- 819 (1095)
Q Consensus 749 ~~~lp~~l~~L-~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~--~---- 819 (1095)
.+ ++ .+ ++|+.|++++ +..+|.. +++|+.|+|++|.++.+|. .+++|++|++++|+... .
T Consensus 310 ~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 310 RS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp SE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred Cc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 32 11 11 2334433222 2233322 2444555555554444443 24445555554443322 1
Q ss_pred -----------CCCCCCCccceeecccCccCcccCCCCcchhhh
Q 047103 820 -----------SLPELPPHLVMLDARNCKRLQSLPELPSCLEAL 852 (1095)
Q Consensus 820 -----------~lp~l~~sL~~L~l~~c~~L~~lp~~~~~l~~l 852 (1095)
.+|..+++|+.|++++|+ ++.+|.+|.++..+
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDL 421 (454)
T ss_dssp CCEEECCC------------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhhe
Confidence 033334667777777766 44445555555433
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.1e-21 Score=220.53 Aligned_cols=237 Identities=18% Similarity=0.194 Sum_probs=160.0
Q ss_pred CcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|++|+|++|.+....+ .+..+++|++|+|++|......|..+.++++|++|+|++|. ++.+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~---------- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP---------- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc----------
Confidence 466777777776555444 37788888888888887777677888888888888888754 334554322
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCC--ccccccCCCCCCCEEEccCcccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEA 722 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~ 722 (1095)
.+|++|++++|.++.++.. +..+++|+.|++++|.... ..+..+.++++|++|++++|.+.
T Consensus 121 ------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 184 (330)
T 1xku_A 121 ------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---- 184 (330)
T ss_dssp ------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC----
T ss_pred ------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc----
Confidence 2456777777777766543 6777777777777776643 55566777777777777776543
Q ss_pred ccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccC-cccCCCCCCCeeeCCCCCCcccCcc
Q 047103 723 SNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIP-RDIGCLSSLVELDLSRNNFESLPSG 799 (1095)
Q Consensus 723 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~ 799 (1095)
.+|..+. ++|+.|++++|.+.+..|..+.++++|+.|++++ +..++ ..+..+++|+.|+|++|.++.+|..
T Consensus 185 ----~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 185 ----TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp ----SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred ----cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 2343332 6777777777777776677777777777776554 34443 3567777788888888887777777
Q ss_pred cCCCCCCCEEeccCCCCcccCCCCC---------CCccceeecccCc
Q 047103 800 ISHLSRLKWLHLFDCIMLQSSLPEL---------PPHLVMLDARNCK 837 (1095)
Q Consensus 800 l~~L~~L~~L~L~~c~~l~~~lp~l---------~~sL~~L~l~~c~ 837 (1095)
+..+++|++|+|++|+.... .+.. .++|+.|++.+|+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCc
Confidence 77777888888877754322 1111 2566777777776
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.1e-21 Score=220.74 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=147.6
Q ss_pred CccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcceeecccCCCCccccCC-CCC
Q 047103 515 PNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKLKYIDLNHSSNLTRIPE-PSE 588 (1095)
Q Consensus 515 ~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L~~L~Ls~n~~l~~~p~-~~~ 588 (1095)
.+|+.++++++.++.+|.. +++.++.|+++++.+.. +..+++|++|+|++|.+....|. +..
T Consensus 33 c~l~~l~~~~~~l~~ip~~------------~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE------------ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCSSCCSC------------CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred ccCCEEECCCCCccccCCC------------CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence 4677788877776655531 12355555555554432 34455555555555554443332 555
Q ss_pred CccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCC
Q 047103 589 TPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHT 668 (1095)
Q Consensus 589 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n 668 (1095)
+++|++|+|++|... .+|..+. ++|++|++++|......+..+..+++ |+.|++++|
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~--------------------L~~L~l~~n 157 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN--------------------MNCIEMGGN 157 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS--------------------CCEEECCSC
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc--------------------CCEEECCCC
Confidence 555555555555433 3444333 55555555554433222222344444 445555555
Q ss_pred CCcc---ccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecC
Q 047103 669 PIEE---VPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMG 745 (1095)
Q Consensus 669 ~i~~---lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~ 745 (1095)
.++. .|..+..+ +|+.|++++|.+.+ +|..+. ++|++|++++|.+.+. .|..+..+++|+.|+|++
T Consensus 158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI-------ELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp CCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC-------CTTSSTTCTTCSCCBCCS
T ss_pred ccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc-------CHHHhcCCCCCCEEECCC
Confidence 5542 23334444 55666665554332 443332 4555666655544331 123355555666666666
Q ss_pred CCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcc-cCC------CCCCCEEeccCCCC
Q 047103 746 CTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISH------LSRLKWLHLFDCIM 816 (1095)
Q Consensus 746 ~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~------L~~L~~L~L~~c~~ 816 (1095)
|.+.+..+..+..+++|+.|++.+ +..+|..+..+++|+.|+|++|.++.+|.. +.. .++|+.|++++|+.
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 655555555555566666554433 456677777788888888888888877642 222 46688888888875
Q ss_pred cccC-CCCC---CCccceeecccCc
Q 047103 817 LQSS-LPEL---PPHLVMLDARNCK 837 (1095)
Q Consensus 817 l~~~-lp~l---~~sL~~L~l~~c~ 837 (1095)
.... .|.. .++|+.|++++|.
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 4211 2221 2567777777764
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.3e-22 Score=224.52 Aligned_cols=216 Identities=25% Similarity=0.328 Sum_probs=123.0
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccC
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSE 646 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~ 646 (1095)
+++.|+|++|.+....+.+..+++|++|+|++|... .+|..++++++|++|+|++|... .+|..+..+++|+ +.+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 444455555443322222444555555555554443 44555555555555555554322 4454454455444 44444
Q ss_pred CcccCCCccc------------cCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccC
Q 047103 647 CVNLSEFPRI------------SGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAF 714 (1095)
Q Consensus 647 c~~L~~~p~~------------~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~ 714 (1095)
|+.+..+|.. ..+|+.|+|++|.++.+|..++.+++|+.|+|++|.+. .+|..+..+++|++|+|++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence 4444444332 23455666666666666666666666666666665544 3444555566666666666
Q ss_pred ccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc
Q 047103 715 CEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 715 ~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
|.+.+ .+|..+.++++|+.|+|++|.+.+. +|..+..+++|+.|+|++|++.
T Consensus 239 n~~~~-------~~p~~~~~l~~L~~L~L~~n~~~~~---------------------~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 239 CTALR-------NYPPIFGGRAPLKRLILKDCSNLLT---------------------LPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCC-------BCCCCTTCCCCCCEEECTTCTTCCB---------------------CCTTGGGCTTCCEEECTTCTTC
T ss_pred Ccchh-------hhHHHhcCCCCCCEEECCCCCchhh---------------------cchhhhcCCCCCEEeCCCCCch
Confidence 55444 3344455556666666666554444 4556677788899999998765
Q ss_pred -ccCcccCCCCCCCEEeccCC
Q 047103 795 -SLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 795 -~lp~~l~~L~~L~~L~L~~c 814 (1095)
.+|..+.++++|+.+++..+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGG
T ss_pred hhccHHHhhccCceEEeCCHH
Confidence 78989999999999988765
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.3e-20 Score=211.99 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=193.0
Q ss_pred cceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCC
Q 047103 568 KLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSEC 647 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c 647 (1095)
+|+.++++++... .+|. .-.++|++|+|++|......+..+.++++|++|+|++|......|..+..+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------- 101 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK-------- 101 (330)
T ss_dssp ETTEEECTTSCCC-SCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred CCeEEEecCCCcc-ccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC--------
Confidence 6778888877543 4553 12378999999999877776778999999999999998766665776665554
Q ss_pred cccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+... ..
T Consensus 102 ------------L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~ 162 (330)
T 1xku_A 102 ------------LERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GI 162 (330)
T ss_dssp ------------CCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GB
T ss_pred ------------CCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----Cc
Confidence 4589999999999998765 8999999999998887777899999999999999877531 13
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Cccc-CcccCCCCCCCeeeCCCCCCcccCc-ccCCC
Q 047103 728 LPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKI-PRDIGCLSSLVELDLSRNNFESLPS-GISHL 803 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L 803 (1095)
.+..+.++++|+.|++++|.+.. +|..+. ++|+.|++.+ +..+ |..+..+++|+.|+|++|.++.++. .+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 45678899999999999998765 555443 7888887765 4444 6789999999999999999998765 78899
Q ss_pred CCCCEEeccCCCCcccCCCC-C--CCccceeecccCccCcccC
Q 047103 804 SRLKWLHLFDCIMLQSSLPE-L--PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 804 ~~L~~L~L~~c~~l~~~lp~-l--~~sL~~L~l~~c~~L~~lp 843 (1095)
++|+.|+|++|... . +|. + .++|+.|++++|+ ++.+|
T Consensus 240 ~~L~~L~L~~N~l~-~-lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 240 PHLRELHLNNNKLV-K-VPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp TTCCEEECCSSCCS-S-CCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred CCCCEEECCCCcCc-c-CChhhccCCCcCEEECCCCc-CCccC
Confidence 99999999999654 4 554 2 3789999999997 66665
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.6e-20 Score=211.72 Aligned_cols=255 Identities=20% Similarity=0.211 Sum_probs=198.8
Q ss_pred CcceEEcccCCCCCCC--CCCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCC
Q 047103 549 ELRYLHWHQYPLKNED--KAPKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCE 625 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~~l~--~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 625 (1095)
.++.++++++.+..+. -.++|++|+|++|.+....| .+..+++|++|+|++|......|..++++++|++|+|++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 5677777777766552 24577888888876655544 37777888888888777766667777788888888887754
Q ss_pred CCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCC--CccccccC
Q 047103 626 SLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSL--KSLSTNIC 702 (1095)
Q Consensus 626 ~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l--~~lp~~l~ 702 (1095)
+..+|..+ ..+|++|++++|.++.+|.. +..+++|+.|++++|.+. +..|..+.
T Consensus 114 -l~~l~~~~----------------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 114 -LVEIPPNL----------------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp -CCSCCSSC----------------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred -CCccCccc----------------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 33444322 14678999999999998875 799999999999999875 36677788
Q ss_pred CCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccC-cccCC
Q 047103 703 KLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIP-RDIGC 779 (1095)
Q Consensus 703 ~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp-~~l~~ 779 (1095)
.+ +|++|++++|.+.+ +|..+. ++|+.|++++|.+.+..+..+.++++|+.|++++ +..++ ..+..
T Consensus 171 ~l-~L~~L~l~~n~l~~--------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTG--------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SC-CCSCCBCCSSBCSS--------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CC-ccCEEECcCCCCCc--------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 88 99999999987554 454443 7999999999999998888999999999997765 55555 47889
Q ss_pred CCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCC----C-----CCccceeecccCcc
Q 047103 780 LSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPE----L-----PPHLVMLDARNCKR 838 (1095)
Q Consensus 780 l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~----l-----~~sL~~L~l~~c~~ 838 (1095)
+++|+.|+|++|.++.+|..+..+++|+.|+|++|+.... .+. . .++|+.|++.+|+.
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcc
Confidence 9999999999999999999999999999999999975432 211 1 35788999999983
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.7e-21 Score=216.64 Aligned_cols=205 Identities=26% Similarity=0.413 Sum_probs=162.5
Q ss_pred CCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecC
Q 047103 588 ETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRH 667 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~ 667 (1095)
..++++.|+|++|... .+|..++++++|++|+|++|... .+|..+..+++| ++|+|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L--------------------~~L~Ls~ 136 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL--------------------ETLTLAR 136 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTC--------------------SEEEEES
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCC--------------------CEEECCC
Confidence 3578999999998765 78888999999999999997655 788777666554 5889999
Q ss_pred CCCccccCccCCCCCCcEEeccCCCCCCccccccCC---------CCCCCEEEccCccccccccccccccCccccCCCCC
Q 047103 668 TPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICK---------LKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGL 738 (1095)
Q Consensus 668 n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~---------L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L 738 (1095)
|.++.+|..+..+++|++|+|++|+..+.+|..+.. +++|++|++++|.+. .+|..+.++++|
T Consensus 137 n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L 208 (328)
T 4fcg_A 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNL 208 (328)
T ss_dssp CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTC
T ss_pred CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCC
Confidence 999999999999999999999999999999987764 899999999987543 567778899999
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCC---CcccCcccCCCCCCCeeeCCCCCCc-ccCcccCCCCCCCEEeccCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAG---IIKIPRDIGCLSSLVELDLSRNNFE-SLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~---~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~L~~L~~L~L~~c 814 (1095)
+.|+|++|.+.+ +|..+..+++|+.|++++ ...+|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 999999998774 555677777777776655 3456777777777777777776554 66777777777777777777
Q ss_pred CCcccCCCCC
Q 047103 815 IMLQSSLPEL 824 (1095)
Q Consensus 815 ~~l~~~lp~l 824 (1095)
+.++. +|..
T Consensus 288 ~~~~~-iP~~ 296 (328)
T 4fcg_A 288 VNLSR-LPSL 296 (328)
T ss_dssp TTCCC-CCGG
T ss_pred Cchhh-ccHH
Confidence 76665 5543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1e-19 Score=222.25 Aligned_cols=252 Identities=22% Similarity=0.288 Sum_probs=153.8
Q ss_pred ccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-CCCCcceeecccCCCCccccCCCCCCccccE
Q 047103 516 NLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-DKAPKLKYIDLNHSSNLTRIPEPSETPNLDR 594 (1095)
Q Consensus 516 ~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 594 (1095)
+++.|++++|.++.+|.. ++.+|++|++++|.++.+ ..+++|++|+|++|.+ +.+|. .+++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~------------l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDC------------LPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQL-TSLPV--LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCSCCCSC------------CCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCC-SCCCC--CCTTCCE
T ss_pred CCcEEEecCCCcCccChh------------hCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcC-CcCCC--CCCCCCE
Confidence 466677777666655431 123666666666666555 3456777777777754 34554 6677888
Q ss_pred eeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCCCccccCCceEEEecCCCCccc
Q 047103 595 MNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPRISGNVVELKLRHTPIEEV 673 (1095)
Q Consensus 595 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~l 673 (1095)
|+|++|.... +|. .+++|++|+|++|. +..+|.. +++|+ +.+++| .+..+|..+.+|+.|++++|.++.+
T Consensus 106 L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 106 LSIFSNPLTH-LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp EEECSCCCCC-CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred EECcCCcCCC-CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCC
Confidence 8887765443 444 56777788887754 4456653 35566 555554 5566666677788888888888887
Q ss_pred cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCC
Q 047103 674 PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLP 753 (1095)
Q Consensus 674 p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 753 (1095)
| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+.. +|. .+++|+.|+|++|.+.+ +|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~--------l~~---~~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS--------LPA---LPSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--------CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc--------cCC---CCCCCCEEEccCCccCc-CC
Confidence 7 456778888888876543 4442 4678888888765442 332 23678888888776554 33
Q ss_pred cccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 754 ESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 754 ~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
..+++|+.|++++ +..+|. .+++|+.|+|++|+|+.+|..+.++++|+.|+|++|+.
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 2334444443332 334444 34555555555555555555555555555555555543
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=2.5e-19 Score=221.88 Aligned_cols=331 Identities=18% Similarity=0.124 Sum_probs=214.1
Q ss_pred ecccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcc
Q 047103 495 FLDLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKL 569 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L 569 (1095)
..|.++.....++... =++++.|+|++|.|+.++. ..+..++ +|++|++++|.+.. +..+++|
T Consensus 35 ~~~c~~~~l~~vP~~l---p~~~~~LdLs~N~i~~l~~--------~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L 102 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGS--------YSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHL 102 (635)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTSCCCEECT--------TTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEECCCCCcCccCCCC---CcCCCEEEeeCCCCCCCCH--------HHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCC
Confidence 4455555555554321 1479999999999987764 3345555 89999999998765 4779999
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCc-ccCCcccccccce-eeccC
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLR-CFPQNIHFVSSIK-INCSE 646 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~l~~L~-l~l~~ 646 (1095)
++|+|++|++....+. |.++++|++|+|++|......+..|+++++|++|+|++|.... .+|..+..+++|+ +.+++
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 9999999976554444 8999999999999998777666789999999999999987544 4577777788888 76655
Q ss_pred CcccCCC----------------------------cc-------------------------------------------
Q 047103 647 CVNLSEF----------------------------PR------------------------------------------- 655 (1095)
Q Consensus 647 c~~L~~~----------------------------p~------------------------------------------- 655 (1095)
+.- ..+ +.
T Consensus 183 N~l-~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 183 NKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred ccc-cccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 321 100 00
Q ss_pred ----------------------------------------------------------------ccCCceEEEecCCCCc
Q 047103 656 ----------------------------------------------------------------ISGNVVELKLRHTPIE 671 (1095)
Q Consensus 656 ----------------------------------------------------------------~~~~L~~L~L~~n~i~ 671 (1095)
...+++.|++.++.+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence 0001222333333222
Q ss_pred cccC--------------------ccCCCCCCcEEeccCCCCCC--ccccccCCCCCCCEEEccCccccccccc------
Q 047103 672 EVPS--------------------SIDCLPDLETLEMSNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEAS------ 723 (1095)
Q Consensus 672 ~lp~--------------------~i~~l~~L~~L~Ls~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~~------ 723 (1095)
.++. ....+++|+.|++++|.... ..+..+..+.+|+.|++..+......+.
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 2111 11245677888887776532 2233334445555555544432221100
Q ss_pred ---------cc-c-ccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCc----ccCcccCCCCCCCeeeC
Q 047103 724 ---------NI-K-ELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGII----KIPRDIGCLSSLVELDL 788 (1095)
Q Consensus 724 ---------~i-~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~----~lp~~l~~l~~L~~L~L 788 (1095)
.. . .-+..+..+++|+.++++.|.+....+..+..+++|+.|++++.. ..|..+..+++|+.|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 00 0 012235667788888888888777777777888888888776532 25677788888888888
Q ss_pred CCCCCccc-CcccCCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCccC
Q 047103 789 SRNNFESL-PSGISHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRL 839 (1095)
Q Consensus 789 s~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L 839 (1095)
++|+++.+ |..+.++++|++|+|++|.. ....|.. .++|+.|++++|...
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCC-CBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcC-CCCChhHHhCCCCCCEEECCCCcCC
Confidence 88888866 45678888888888888853 3312321 267888888887633
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.9e-19 Score=213.85 Aligned_cols=221 Identities=26% Similarity=0.331 Sum_probs=162.5
Q ss_pred CcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|++|+|++|.+....|. |..+++|++|+|++|......+..|.++++|++|+|++|......+..+..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS------- 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT-------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC-------
Confidence 4677777777766655553 78888888888888877777777888888888888888654433233344333
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCcccc-ccCCCCCCCEEEccCccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLST-NICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+|++|+|++|.++.+|. .+..+++|+.|+|++|+.++.++. .+.++++|++|+|++|.+.+
T Consensus 148 -------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 210 (452)
T 3zyi_A 148 -------------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210 (452)
T ss_dssp -------------TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred -------------CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence 45588888888888776 578899999999999888887776 47889999999999886654
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Cccc-CcccCCCCCCCeeeCCCCCCcccCc-c
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKI-PRDIGCLSSLVELDLSRNNFESLPS-G 799 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~ 799 (1095)
+| .+..+++|+.|+|++|.+.+..|..+.++++|+.|++.+ +..+ |..+..+++|+.|+|++|+++.+|. .
T Consensus 211 ----~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 211 ----MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp ----CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ----cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 33 367888999999999988887777777777777775554 3333 4556777778888888887777665 3
Q ss_pred cCCCCCCCEEeccCCCC
Q 047103 800 ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 800 l~~L~~L~~L~L~~c~~ 816 (1095)
+..+++|+.|+|++|+.
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 56677777777777753
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=215.00 Aligned_cols=225 Identities=17% Similarity=0.197 Sum_probs=137.3
Q ss_pred CCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCC--ccccccc
Q 047103 563 EDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQ--NIHFVSS 639 (1095)
Q Consensus 563 l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~--~i~~l~~ 639 (1095)
+..+++|++|+|++|.+....|. +..+++|++|+|++|......+..++++++|++|+|++|.. ..+|. .+..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCC
Confidence 35567778888887766655554 77778888888887766554444477788888888887643 34443 3444444
Q ss_pred ceeeccCCcccCCCccccCCceEEEecCC-CCcccc-CccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccc
Q 047103 640 IKINCSECVNLSEFPRISGNVVELKLRHT-PIEEVP-SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQ 717 (1095)
Q Consensus 640 L~l~l~~c~~L~~~p~~~~~L~~L~L~~n-~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~ 717 (1095)
| ++|++++| .++.++ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 151 L--------------------~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 151 L--------------------QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp C--------------------CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred C--------------------cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 4 45666665 355443 3466667777777777666666666666777777777776654
Q ss_pred cccccccccccCcc-ccCCCCCCEEEecCCCCCCCCCcccC---CCccccccccCC-------CcccCcccCCCCCCCee
Q 047103 718 LGKEASNIKELPSS-IENLEGLRELQLMGCTKLGSLPESLG---NLKALEFLSAAG-------IIKIPRDIGCLSSLVEL 786 (1095)
Q Consensus 718 ~~~~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~---~L~~L~~L~l~~-------~~~lp~~l~~l~~L~~L 786 (1095)
.. +|.. +..+++|+.|++++|.+.+..+..+. ....++.+++.+ +..+|..+..+++|+.|
T Consensus 211 ~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 211 IL--------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp TT--------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cc--------chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 22 2222 23466677777777766554433222 122233332222 22356666777777777
Q ss_pred eCCCCCCcccCccc-CCCCCCCEEeccCCCC
Q 047103 787 DLSRNNFESLPSGI-SHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 787 ~Ls~n~l~~lp~~l-~~L~~L~~L~L~~c~~ 816 (1095)
+|++|+++.+|..+ ..+++|++|+|++|+.
T Consensus 283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 77777777777664 6777777777777753
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=212.07 Aligned_cols=221 Identities=26% Similarity=0.335 Sum_probs=160.6
Q ss_pred CcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|+.|+|++|.+....+ .|..+++|++|+|++|......+..|.++++|++|+|++|......+..+..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS------- 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS-------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc-------
Confidence 467777777776555544 378888888888888877766667888888888888888654332223344333
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCcccc-ccCCCCCCCEEEccCccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLST-NICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+|++|+|++|.++.+|. .+..+++|+.|+|++|+.++.++. .+.++++|++|+|++|.+.
T Consensus 137 -------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 198 (440)
T 3zyj_A 137 -------------KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198 (440)
T ss_dssp -------------SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----
T ss_pred -------------cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----
Confidence 45588888888888776 578899999999999887777765 5788999999999987654
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--Cccc-CcccCCCCCCCeeeCCCCCCcccCcc-
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKI-PRDIGCLSSLVELDLSRNNFESLPSG- 799 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~- 799 (1095)
.+| .+..+++|+.|+|++|.+.+..|..+.++++|+.|++.+ +..+ +..+..+++|+.|+|++|+++.+|..
T Consensus 199 ---~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 199 ---EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp ---SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ---ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 344 377888999999999988877777777777777775544 3333 44566777777777777777766653
Q ss_pred cCCCCCCCEEeccCCCC
Q 047103 800 ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 800 l~~L~~L~~L~L~~c~~ 816 (1095)
+..+++|+.|+|++|+.
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 46677777777777753
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-19 Score=203.59 Aligned_cols=221 Identities=20% Similarity=0.203 Sum_probs=153.1
Q ss_pred CcceeecccCCCCccccCC--CCCCccccEeeccCCccCcc--ccccccCCCCcceEeccCCCCCcccCCccccccccee
Q 047103 567 PKLKYIDLNHSSNLTRIPE--PSETPNLDRMNLWNCTGLAL--IPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKI 642 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l 642 (1095)
++|++|+|++|.+. .+|. +..+++|++|+|++|..... .+..+..+++|++|+|++|. +..+|..+..++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~---- 101 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE---- 101 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCT----
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCC----
Confidence 46777778777654 4443 67888888888888765432 35666678888888888864 334554444333
Q ss_pred eccCCcccCCCccccCCceEEEecCCCCccccC--ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccc
Q 047103 643 NCSECVNLSEFPRISGNVVELKLRHTPIEEVPS--SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGK 720 (1095)
Q Consensus 643 ~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~ 720 (1095)
+|++|++++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 102 ----------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 102 ----------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp ----------------TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ----------------CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 34577888888877764 578888888888888887777777788888888888888765541
Q ss_pred ccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc-c
Q 047103 721 EASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS-G 799 (1095)
Q Consensus 721 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~ 799 (1095)
.+|..+..+++|+.|+|++|.+.+..|. .+..+++|+.|+|++|.++.++. .
T Consensus 166 ------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 166 ------FLPDIFTELRNLTFLDLSQCQLEQLSPT---------------------AFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp ------EECSCCTTCTTCCEEECTTSCCCEECTT---------------------TTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred ------cchhHHhhCcCCCEEECCCCCcCCcCHH---------------------HhcCCCCCCEEECCCCccCccChhh
Confidence 2456677888888888888876554443 44556677777777777776654 5
Q ss_pred cCCCCCCCEEeccCCCCcccCCC----CCCCccceeecccCc
Q 047103 800 ISHLSRLKWLHLFDCIMLQSSLP----ELPPHLVMLDARNCK 837 (1095)
Q Consensus 800 l~~L~~L~~L~L~~c~~l~~~lp----~l~~sL~~L~l~~c~ 837 (1095)
+..+++|+.|+|++|+.... .| .+|++|+.|++++|+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBC-SSSSCCCCCTTCCEEECTTCC
T ss_pred ccCcccCCEeECCCCCCccc-CHHHHHhhhccCCEEEccCCC
Confidence 66677777777777755443 22 234577777777776
No 61
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.82 E-value=1.2e-21 Score=192.16 Aligned_cols=125 Identities=21% Similarity=0.336 Sum_probs=88.5
Q ss_pred CCcccccccCcchHHHHHHHhh--CCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhc
Q 047103 1 METTGEDTRVIFISHLYAALCR--KKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDC 78 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~--~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~ 78 (1095)
|||+|+|++ ||+||+.+|++ +|+++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|.||+.||..++.|
T Consensus 15 ISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~ 92 (146)
T 3ub2_A 15 VCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTE 92 (146)
T ss_dssp EECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHT
T ss_pred EeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHH
Confidence 699999965 89999999999 69999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCeEEeEEeeeccc----cccccccccchHHHHHHHhhcCChhHHHHHHHHH
Q 047103 79 KKANDQIVIPVFYNVSPF----SVRHQTGIFGDAFVKFGQQFREKPEMVQKWRDEL 130 (1095)
Q Consensus 79 ~~~~~~~v~pvfy~v~ps----~vr~q~g~~~~~f~~~~~~~~~~~~~~~~w~~aL 130 (1095)
...+..+||||||+|+++ .+|........ .+...|++..+.|.+|++||
T Consensus 93 ~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~---~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 93 APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGR---GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred HhhcCCcEEEEEcCCChhhCCHHHhCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence 743334788999999954 45655432221 23444555667888898775
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=203.01 Aligned_cols=223 Identities=20% Similarity=0.177 Sum_probs=146.0
Q ss_pred eecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcc--cCCcccccccceeeccCCc
Q 047103 571 YIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRC--FPQNIHFVSSIKINCSECV 648 (1095)
Q Consensus 571 ~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~--lp~~i~~l~~L~l~l~~c~ 648 (1095)
.++.+++. ++.+|. .-.++|++|+|++|......+..+.++++|++|+|++|..... .|..+..
T Consensus 11 ~l~c~~~~-l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------ 76 (306)
T 2z66_A 11 EIRCNSKG-LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG------------ 76 (306)
T ss_dssp EEECCSSC-CSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS------------
T ss_pred EEEcCCCC-cccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc------------
Confidence 45555553 344443 2236888899988876543334578888888888888653311 1221211
Q ss_pred ccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccc-cccCCCCCCCEEEccCccccccccccccc
Q 047103 649 NLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLS-TNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 649 ~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
..+|++|+|++|.++.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .
T Consensus 77 --------~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~ 141 (306)
T 2z66_A 77 --------TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------A 141 (306)
T ss_dssp --------CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------C
T ss_pred --------ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------c
Confidence 124557777777777777767777777777777766554433 356666777777777665543 2
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCccc-CcccCCCCCC
Q 047103 728 LPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESL-PSGISHLSRL 806 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L 806 (1095)
.|..+..+++|+.|++++|.+.+. .+|..+..+++|+.|+|++|.++.+ |..+..+++|
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQEN--------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGG--------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred chhhcccCcCCCEEECCCCccccc--------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 233455666666666666653321 2566778889999999999999977 6688999999
Q ss_pred CEEeccCCCCcccCCCC-C--CCccceeecccCccCcccC
Q 047103 807 KWLHLFDCIMLQSSLPE-L--PPHLVMLDARNCKRLQSLP 843 (1095)
Q Consensus 807 ~~L~L~~c~~l~~~lp~-l--~~sL~~L~l~~c~~L~~lp 843 (1095)
+.|+|++|..... .+. + .++|+.|++++|......|
T Consensus 202 ~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 202 QVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcccCH
Confidence 9999999975432 221 2 3799999999997544444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.9e-21 Score=216.28 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=145.9
Q ss_pred CCCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 565 KAPKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
.+++|++|+|++|.+....| .+..+++|++|+|++|...+..+ +..+++|++|+|++|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~------------------ 91 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY------------------ 91 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE------------------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc------------------
Confidence 34455555555554443332 24555555555555555443332 5555555555555543
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+..++. ..+|++|++++|.++.++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 92 ------l~~l~~-~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 160 (317)
T 3o53_A 92 ------VQELLV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-- 160 (317)
T ss_dssp ------EEEEEE-CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--
T ss_pred ------cccccC-CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--
Confidence 222221 14566777777777766543 3667777777777776666666777777777777777665422
Q ss_pred cccccCccc-cCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCccc
Q 047103 724 NIKELPSSI-ENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGI 800 (1095)
Q Consensus 724 ~i~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 800 (1095)
|..+ ..+++|+.|+|++|.+.+. |. ...+++|+.|++++ +..+|..+..+++|+.|+|++|.++.+|..+
T Consensus 161 -----~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 161 -----FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp -----GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred -----HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 2223 3567777777777776544 22 23466666665443 5566767777888888888888888888888
Q ss_pred CCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCccCcc
Q 047103 801 SHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRLQS 841 (1095)
Q Consensus 801 ~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L~~ 841 (1095)
..+++|+.|+|++|+.....+|.. .++|+.|++.+|+.++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 888888888888887652213332 24566666665555443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.3e-19 Score=208.72 Aligned_cols=218 Identities=20% Similarity=0.149 Sum_probs=152.7
Q ss_pred CCcceEEcccCCCC-----CCCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEec
Q 047103 548 KELRYLHWHQYPLK-----NEDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSL 621 (1095)
Q Consensus 548 ~~Lr~L~l~~~~l~-----~l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 621 (1095)
..+++|++++|.+. .+..+++|++|+|++|.+....|. |.++++|++|+|++|......+..+..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555443 235677888888888866655543 778888888888888766655566788888888888
Q ss_pred cCCCCCcccCCcccccccce-eeccCCcccCCCcc----ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCc
Q 047103 622 EGCESLRCFPQNIHFVSSIK-INCSECVNLSEFPR----ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKS 696 (1095)
Q Consensus 622 ~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~----~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~ 696 (1095)
++|......+..+..+++|+ +.+++|+.+..++. ...+|+.|+|++|.++.+|. +..+++|+.|+|++|.+.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCccc
Confidence 88765544444667777777 77777776666553 23567788888888877763 67777888888888777777
Q ss_pred cccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcc
Q 047103 697 LSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRD 776 (1095)
Q Consensus 697 lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~ 776 (1095)
.|..+.++++|+.|+|++|.+.+. .|..+.++++|+.|+|++|.+.+..+ ..
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------~~ 285 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLI-------ERNAFDGLASLVELNLAHNNLSSLPH---------------------DL 285 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCSCCCT---------------------TS
T ss_pred CcccccCccCCCEEEeCCCcCceE-------CHHHhcCCCCCCEEECCCCcCCccCh---------------------HH
Confidence 777777888888888887766542 23446677778888887776543322 23
Q ss_pred cCCCCCCCeeeCCCCCCc
Q 047103 777 IGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 777 l~~l~~L~~L~Ls~n~l~ 794 (1095)
+..+++|+.|+|++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 566788999999999775
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=7.9e-21 Score=214.06 Aligned_cols=252 Identities=18% Similarity=0.139 Sum_probs=170.6
Q ss_pred cccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCCCCcceeecccCCCCc-cccCC-C
Q 047103 509 GAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDKAPKLKYIDLNHSSNL-TRIPE-P 586 (1095)
Q Consensus 509 ~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~l~~L~~L~Ls~n~~l-~~~p~-~ 586 (1095)
+.+..+++|+.|++++|.+ .+|.. ++ ..|+.|+|++|.+. ..+|. +
T Consensus 37 ~~~~~~~~L~~l~l~~n~l-~~p~~------------~~-------------------~~L~~L~L~~n~l~~~~~~~~~ 84 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE-ADLGQ------------FT-------------------DIIKSLSLKRLTVRAARIPSRI 84 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT-CCCHH------------HH-------------------HHHHHCCCCEEEEEEEECBHHH
T ss_pred EEEccCCCceeEeeccccc-ccHHH------------HH-------------------HHHhhcccccccccCCCcCHHH
Confidence 4566778888888888876 44431 11 12566666666542 23333 2
Q ss_pred C-------CCccccEeeccCCccCccccccc--cCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCcccc
Q 047103 587 S-------ETPNLDRMNLWNCTGLALIPSYI--QNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRIS 657 (1095)
Q Consensus 587 ~-------~l~~L~~L~L~~~~~l~~lp~~i--~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~ 657 (1095)
. .+++|++|+|++|...+.+|..+ ..+++|++|+|++|..... |..+..+... ..
T Consensus 85 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~---------------~~ 148 (312)
T 1wwl_A 85 LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW---------------LK 148 (312)
T ss_dssp HHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT---------------CC
T ss_pred HHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh---------------hc
Confidence 2 57888888888888887788776 7888888888888765444 6544433110 12
Q ss_pred CCceEEEecCCCCcccc-CccCCCCCCcEEeccCCCCCCc--ccccc--CCCCCCCEEEccCccccccccccccccCc-c
Q 047103 658 GNVVELKLRHTPIEEVP-SSIDCLPDLETLEMSNCYSLKS--LSTNI--CKLKSLRSLHLAFCEQLGKEASNIKELPS-S 731 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~--lp~~l--~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~ 731 (1095)
.+|++|+|++|.++.++ ..++.+++|++|+|++|.+.+. +|..+ ..+++|++|++++|.+.+. ..++. .
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~ 223 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-----SGVCSAL 223 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-----HHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-----HHHHHHH
Confidence 45678889999988777 6788999999999999887765 34444 7889999999999876531 12222 2
Q ss_pred ccCCCCCCEEEecCCCCCCCCC-cccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCE
Q 047103 732 IENLEGLRELQLMGCTKLGSLP-ESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKW 808 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp-~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~ 808 (1095)
+.++++|+.|+|++|.+.+..| ..+..+++|+.|++++ +..+|..+. ++|+.|+|++|+++.+|. +..+++|++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 3577899999999998887664 3445566666665443 455666555 677777777777776665 667777777
Q ss_pred EeccCCCC
Q 047103 809 LHLFDCIM 816 (1095)
Q Consensus 809 L~L~~c~~ 816 (1095)
|+|++|+.
T Consensus 301 L~L~~N~l 308 (312)
T 1wwl_A 301 LSLKGNPF 308 (312)
T ss_dssp EECTTCTT
T ss_pred EeccCCCC
Confidence 77777753
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=9.5e-19 Score=206.97 Aligned_cols=203 Identities=17% Similarity=0.125 Sum_probs=137.2
Q ss_pred CCCCCcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce
Q 047103 563 EDKAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK 641 (1095)
Q Consensus 563 l~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 641 (1095)
+..+++|++|+|++|.+....+. |.++++|++|+|++|......+..|..+++|++|+|++|......+..+..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 35566777777777765444332 67777777777777765554455677777777777777654444444566666666
Q ss_pred -eeccCCcccCCCcc----ccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcc
Q 047103 642 -INCSECVNLSEFPR----ISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCE 716 (1095)
Q Consensus 642 -l~l~~c~~L~~~p~----~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~ 716 (1095)
+.+.+|+.+..++. ...+|++|+|++|.++.+|. +..+++|+.|+|++|.+.+..|..+.++++|+.|+|++|.
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 66666665555443 23466778888888887774 6777788888888877777667777778888888888776
Q ss_pred ccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc
Q 047103 717 QLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 717 ~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
+.+. .+..+.++++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+.
T Consensus 243 l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 243 IQVI-------ERNAFDNLQSLVEINLAHNNLTLLPH---------------------DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEE-------CTTSSTTCTTCCEEECTTSCCCCCCT---------------------TTTSSCTTCCEEECCSSCEE
T ss_pred eeEE-------ChhhhcCCCCCCEEECCCCCCCccCh---------------------hHhccccCCCEEEcCCCCcc
Confidence 6542 23446677778888887776553332 23566788999999999775
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.3e-20 Score=212.84 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=189.0
Q ss_pred ccCCCccccccccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCCCCcceeecccC
Q 047103 497 DLSNKTDIHLTCGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDKAPKLKYIDLNH 576 (1095)
Q Consensus 497 dls~~~~~~i~~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~l~~L~~L~Ls~ 576 (1095)
+++.+.........|..+++|+.|++++|.++.++. ..+..+++|++|+|++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~ 67 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA----------------------------ADLAPFTKLELLNLSS 67 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCH----------------------------HHHTTCTTCCEEECTT
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCH----------------------------HHhhCCCcCCEEECCC
Confidence 444444444455666677778888888777654321 1224567889999998
Q ss_pred CCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccc
Q 047103 577 SSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRI 656 (1095)
Q Consensus 577 n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~ 656 (1095)
|.+....+ +..+++|++|+|++|.... ++ ..++|++|++++|......+. .
T Consensus 68 n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~-----------------------~ 118 (317)
T 3o53_A 68 NVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS-----------------------R 118 (317)
T ss_dssp SCCEEEEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC-----------------------C
T ss_pred CcCCcchh-hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCcc-----------------------c
Confidence 87665444 8889999999999987543 22 348899999998764433222 1
Q ss_pred cCCceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCcccccc-CCCCCCCEEEccCccccccccccccccCccccC
Q 047103 657 SGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNI-CKLKSLRSLHLAFCEQLGKEASNIKELPSSIEN 734 (1095)
Q Consensus 657 ~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l-~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~ 734 (1095)
+.+|++|++++|.++.++. .+..+++|+.|+|++|.+.+..+..+ ..+++|++|++++|.+.+. |. ...
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~-~~~ 189 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--------KG-QVV 189 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------EC-CCC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--------cc-ccc
Confidence 2346788888888887754 67788889999999888777666665 3688899999988876542 22 234
Q ss_pred CCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCc--ccCcccCCCCCCCEEe
Q 047103 735 LEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFE--SLPSGISHLSRLKWLH 810 (1095)
Q Consensus 735 l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~L~~L~~L~ 810 (1095)
+++|+.|+|++|.+.+ +|..+..+++|+.|++++ +..+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 7889999999888775 444588888888886654 6678888999999999999999998 7788899999999999
Q ss_pred ccCCCCccc
Q 047103 811 LFDCIMLQS 819 (1095)
Q Consensus 811 L~~c~~l~~ 819 (1095)
+.+|+.+..
T Consensus 269 l~~~~~l~~ 277 (317)
T 3o53_A 269 KQTVKKLTG 277 (317)
T ss_dssp HHHHHHHHS
T ss_pred CCCchhccC
Confidence 998877766
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.5e-19 Score=199.01 Aligned_cols=202 Identities=21% Similarity=0.207 Sum_probs=139.3
Q ss_pred CcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCccc-CCcccccccceeec
Q 047103 567 PKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCF-PQNIHFVSSIKINC 644 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~l-p~~i~~l~~L~l~l 644 (1095)
++|++|+|++|.+....+. +..+++|++|+|++|......|..+..+++|++|+|++|..++.+ |..+..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~------ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------ 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc------
Confidence 4677777777765554443 777888888888887766666777888888888888887645444 44444333
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccc-cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEV-PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 106 --------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 167 (285)
T 1ozn_A 106 --------------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---- 167 (285)
T ss_dssp --------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred --------------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc----
Confidence 344677777777765 4456777777777777777665555557777777777777765443
Q ss_pred cccccCc-cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc-ccC
Q 047103 724 NIKELPS-SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS-GIS 801 (1095)
Q Consensus 724 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~ 801 (1095)
+|. .+..+++|+.|+|++|.+.+.. |..+..+++|+.|+|++|.++.+|. .+.
T Consensus 168 ----~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 168 ----VPERAFRGLHSLDRLLLHQNRVAHVH---------------------PHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp ----ECTTTTTTCTTCCEEECCSSCCCEEC---------------------TTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ----cCHHHhcCccccCEEECCCCcccccC---------------------HhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 232 3666777777777777654443 3455667788888888888887775 478
Q ss_pred CCCCCCEEeccCCCCc
Q 047103 802 HLSRLKWLHLFDCIML 817 (1095)
Q Consensus 802 ~L~~L~~L~L~~c~~l 817 (1095)
.+++|+.|+|++|+..
T Consensus 223 ~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cCcccCEEeccCCCcc
Confidence 8888888888888754
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.1e-18 Score=191.48 Aligned_cols=217 Identities=20% Similarity=0.163 Sum_probs=148.3
Q ss_pred eeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcc
Q 047103 570 KYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVN 649 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~ 649 (1095)
+.++.+++. ++.+|. ...++|++|+|++|......+..+..+++|++|+|++|......|..+..+++
T Consensus 14 ~~~~c~~~~-l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---------- 81 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL---------- 81 (285)
T ss_dssp CEEECCSSC-CSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT----------
T ss_pred eEEEcCcCC-cccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC----------
Confidence 455555553 334443 23568888888888777666677888888888888887554444555544443
Q ss_pred cCCCccccCCceEEEecCCC-Cccc-cCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccc
Q 047103 650 LSEFPRISGNVVELKLRHTP-IEEV-PSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 650 L~~~p~~~~~L~~L~L~~n~-i~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
|++|++++|. ++.+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.
T Consensus 82 ----------L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------- 144 (285)
T 1ozn_A 82 ----------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL------- 144 (285)
T ss_dssp ----------CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred ----------CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-------
Confidence 3466666665 6655 45567777777777777776666666677777777777777654431
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCc-ccCCCCCCCeeeCCCCCCccc-CcccCCCCC
Q 047103 728 LPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPR-DIGCLSSLVELDLSRNNFESL-PSGISHLSR 805 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~ 805 (1095)
.+..+..+++|+.|+|++|.+. .+|. .+..+++|+.|+|++|.++.+ |..+..+++
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRIS----------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC----------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CHhHhccCCCccEEECCCCccc----------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 1223566677777777766543 3333 467789999999999999976 778999999
Q ss_pred CCEEeccCCCCcccCCCC---CCCccceeecccCcc
Q 047103 806 LKWLHLFDCIMLQSSLPE---LPPHLVMLDARNCKR 838 (1095)
Q Consensus 806 L~~L~L~~c~~l~~~lp~---l~~sL~~L~l~~c~~ 838 (1095)
|+.|+|++|..... .+. -.++|+.|++++|+.
T Consensus 203 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 203 LMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCE
T ss_pred ccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCc
Confidence 99999999965432 222 237899999999973
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=204.46 Aligned_cols=244 Identities=14% Similarity=0.102 Sum_probs=187.1
Q ss_pred CcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCc-ccccccceeec
Q 047103 567 PKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQN-IHFVSSIKINC 644 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~l~l 644 (1095)
++|++|+|++|.+....+ .+..+++|++|+|++|......|..+.++++|++|+|++|... .+|.. +..++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~------ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS------ 124 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT------
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc------
Confidence 478888888887665544 4889999999999999877777788999999999999987544 34432 44333
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccC--ccCCCCCCcEEeccCCCCCCcc-ccccCCCCCCCEEEccCccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPS--SIDCLPDLETLEMSNCYSLKSL-STNICKLKSLRSLHLAFCEQLGKE 721 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~Ls~~~~l~~l-p~~l~~L~~L~~L~Ls~~~~~~~~ 721 (1095)
+|++|++++|.++.+|. .+..+++|++|++++|...+.+ +..+.++++|++|++++|.+.+
T Consensus 125 --------------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 188 (353)
T 2z80_A 125 --------------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-- 188 (353)
T ss_dssp --------------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred --------------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--
Confidence 45689999999999987 6899999999999999655554 5678999999999999997765
Q ss_pred cccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCc----ccCCCCCCCeeeCCCCCCc-
Q 047103 722 ASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPR----DIGCLSSLVELDLSRNNFE- 794 (1095)
Q Consensus 722 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~----~l~~l~~L~~L~Ls~n~l~- 794 (1095)
..|..+..+++|+.|++++|.+....+..+..+++|+.|++++ +..++. .....+.|+.++|+++.++
T Consensus 189 -----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 189 -----YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred -----cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 2466788899999999999987543333345688999997665 333321 1234667888888888776
Q ss_pred ----ccCcccCCCCCCCEEeccCCCCcccCCCC-C---CCccceeecccCccCc
Q 047103 795 ----SLPSGISHLSRLKWLHLFDCIMLQSSLPE-L---PPHLVMLDARNCKRLQ 840 (1095)
Q Consensus 795 ----~lp~~l~~L~~L~~L~L~~c~~l~~~lp~-l---~~sL~~L~l~~c~~L~ 840 (1095)
.+|..+..+++|+.|+|++|... . +|. + .++|+.|++++|+-..
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLK-S-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCC-c-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 57888999999999999999654 4 554 2 3789999999997443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.3e-19 Score=212.24 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred CCCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 565 KAPKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
.+++|++|+|++|.+....| .+..+++|++|+|++|...+..| +..+++|++|+|++|. +..+|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~------------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL------------ 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC------------
Confidence 34467777777775555444 36667777777777766554444 6667777777776653 22222
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
.. .+|+.|++++|.++.+|.. .+++|+.|+|++|.+.+..|..++.+++|++|+|++|.+.+..
T Consensus 97 -----------~~-~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 160 (487)
T 3oja_A 97 -----------VG-PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-- 160 (487)
T ss_dssp -----------EC-TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--
T ss_pred -----------CC-CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--
Confidence 11 4566777777777776653 4677888888887777777777777788888888877766532
Q ss_pred cccccCcccc-CCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCccc
Q 047103 724 NIKELPSSIE-NLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGI 800 (1095)
Q Consensus 724 ~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 800 (1095)
|..+. .+++|+.|+|++|.+.+..+ ...+++|+.|++++ +..+|..+..+++|+.|+|++|.++.+|..+
T Consensus 161 -----~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 161 -----FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp -----GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred -----hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhh
Confidence 33343 57778888888777654421 22344444443322 3334444555555555555555555555555
Q ss_pred CCCCCCCEEeccCCCC
Q 047103 801 SHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 801 ~~L~~L~~L~L~~c~~ 816 (1095)
..+++|+.|++++|+.
T Consensus 234 ~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCTTCCEEECTTCCB
T ss_pred ccCCCCCEEEcCCCCC
Confidence 5555555555555543
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.1e-17 Score=204.31 Aligned_cols=249 Identities=20% Similarity=0.180 Sum_probs=182.7
Q ss_pred CcceEEcccCCCCCCCC--CCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCC
Q 047103 549 ELRYLHWHQYPLKNEDK--APKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCES 626 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~~l~~--l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~ 626 (1095)
.++.|+++++.+..+.. .++|++|+|++|.+. .+|. .+++|++|+|++|... .+|. .+++|++|+|++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc-
Confidence 57888898888877632 378999999999654 5666 6789999999998754 5666 77899999999864
Q ss_pred CcccCCcccccccce-eeccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCC
Q 047103 627 LRCFPQNIHFVSSIK-INCSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLK 705 (1095)
Q Consensus 627 l~~lp~~i~~l~~L~-l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~ 705 (1095)
+..+|. .+++|+ +.++++ .+..+|..+.+|++|+|++|.++.+|.. +++|+.|++++|.+.+ +| ..++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---ccCC
Confidence 555666 366777 666654 5777888888899999999998888763 5678888998876554 55 4578
Q ss_pred CCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCC
Q 047103 706 SLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSL 783 (1095)
Q Consensus 706 ~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L 783 (1095)
+|+.|++++|.+.+ +|. .+++|+.|++++|.+. .+|.. +++|+.|++++ +..+| ..+++|
T Consensus 182 ~L~~L~Ls~N~l~~--------l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 182 GLQELSVSDNQLAS--------LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp TCCEEECCSSCCSC--------CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred CCcEEECCCCCCCC--------CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---CCCCcC
Confidence 89999998876543 333 2478889999888765 34442 36677775544 55566 456788
Q ss_pred CeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCccC
Q 047103 784 VELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCKRL 839 (1095)
Q Consensus 784 ~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~~L 839 (1095)
+.|+|++|+|+.+|. .+++|+.|+|++|... . +|.. .++|+.|++++|+..
T Consensus 244 ~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~-lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 244 KELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-R-LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-S-CCGGGGGSCTTCEEECCSCCCC
T ss_pred cEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-c-CCHHHhhccccCEEEecCCCCC
Confidence 888888888888886 5678888888888543 4 5542 267888888888743
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=4.3e-22 Score=237.12 Aligned_cols=333 Identities=18% Similarity=0.139 Sum_probs=189.6
Q ss_pred ecccCCCcccccccc-ccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC------CCCC
Q 047103 495 FLDLSNKTDIHLTCG-AFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE------DKAP 567 (1095)
Q Consensus 495 ~ldls~~~~~~i~~~-~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l------~~l~ 567 (1095)
.+|++.+........ .|..+++|+.|++++|.++.... ..++..+...+ .|++|++++|.+... ..++
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC----KDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH----HHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH----HHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHh
Confidence 355555544333332 36777888888888777652210 01111222233 677777777766431 2233
Q ss_pred ----cceeecccCCCCcc----ccC-CCCCCccccEeeccCCccCccccccc-----cCCCCcceEeccCCCCCc----c
Q 047103 568 ----KLKYIDLNHSSNLT----RIP-EPSETPNLDRMNLWNCTGLALIPSYI-----QNFNNLGNLSLEGCESLR----C 629 (1095)
Q Consensus 568 ----~L~~L~Ls~n~~l~----~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i-----~~L~~L~~L~L~~c~~l~----~ 629 (1095)
+|++|+|++|.+.. .++ .+..+++|++|+|++|......+..+ ...++|++|+|++|.... .
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57788888776553 223 36777778888887776543323222 234567788887775443 2
Q ss_pred cCCcccccccce-eeccCCcccCC-----Ccc----ccCCceEEEecCCCCcc-----ccCccCCCCCCcEEeccCCCCC
Q 047103 630 FPQNIHFVSSIK-INCSECVNLSE-----FPR----ISGNVVELKLRHTPIEE-----VPSSIDCLPDLETLEMSNCYSL 694 (1095)
Q Consensus 630 lp~~i~~l~~L~-l~l~~c~~L~~-----~p~----~~~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~Ls~~~~l 694 (1095)
++..+..+++|+ +.++++. +.. +.. ...+|++|++++|.++. ++..+..+++|+.|++++|.+.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 344455567777 6666654 221 111 12367777887777775 4666667777788888777654
Q ss_pred Ccc-----ccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccC-----CCccccc
Q 047103 695 KSL-----STNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLG-----NLKALEF 764 (1095)
Q Consensus 695 ~~l-----p~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-----~L~~L~~ 764 (1095)
..- +..+..+++|++|++++|.+.. ..+..++..+..+++|+.|+|++|.+....+..+. ..++|+.
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITA---KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCH---HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCH---HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 321 2223357777788887776544 22233555566677777777777765433222221 2256666
Q ss_pred cccCCCc-------ccCcccCCCCCCCeeeCCCCCCccc-C----cccCC-CCCCCEEeccCCCCcc----cCCCCC---
Q 047103 765 LSAAGII-------KIPRDIGCLSSLVELDLSRNNFESL-P----SGISH-LSRLKWLHLFDCIMLQ----SSLPEL--- 824 (1095)
Q Consensus 765 L~l~~~~-------~lp~~l~~l~~L~~L~Ls~n~l~~l-p----~~l~~-L~~L~~L~L~~c~~l~----~~lp~l--- 824 (1095)
|++.+.. .++..+..+++|++|+|++|.++.. + ..+.. .++|++|+|++|.... . +|..
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~ 396 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS-LAATLLA 396 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHH
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH-HHHHHHh
Confidence 6555422 1344556667777777777776632 1 12222 5677777777775432 2 2221
Q ss_pred CCccceeecccCc
Q 047103 825 PPHLVMLDARNCK 837 (1095)
Q Consensus 825 ~~sL~~L~l~~c~ 837 (1095)
.++|+.|++++|+
T Consensus 397 ~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 397 NHSLRELDLSNNC 409 (461)
T ss_dssp CCCCCEEECCSSS
T ss_pred CCCccEEECCCCC
Confidence 2567777777775
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.4e-19 Score=213.17 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=185.9
Q ss_pred CCcceEEcccCCCCCC-----CCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEecc
Q 047103 548 KELRYLHWHQYPLKNE-----DKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLE 622 (1095)
Q Consensus 548 ~~Lr~L~l~~~~l~~l-----~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 622 (1095)
++|+.|++++|.+..+ ..+++|++|+|++|.+....| +..+++|++|+|++|.... +| ..++|++|+|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECc
Confidence 4899999999987755 688999999999998766555 9999999999999997554 33 34899999999
Q ss_pred CCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCccc-cCccCCCCCCcEEeccCCCCCCcccccc
Q 047103 623 GCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEV-PSSIDCLPDLETLEMSNCYSLKSLSTNI 701 (1095)
Q Consensus 623 ~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l 701 (1095)
+|......+. .+.+|+.|+|++|.++.+ |..++.+++|+.|+|++|.+.+..|..+
T Consensus 108 ~N~l~~~~~~-----------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 108 NNNISRVSCS-----------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp SSCCCCEEEC-----------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCcCCCCCcc-----------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 9765443222 123577899999999976 5578889999999999999888888877
Q ss_pred C-CCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccC
Q 047103 702 C-KLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIG 778 (1095)
Q Consensus 702 ~-~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~ 778 (1095)
. .+++|++|+|++|.+.+. | ....+++|+.|+|++|.+.+. |+.+..+++|+.|++++ +..+|..+.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~--------~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~ 234 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV--------K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALR 234 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE--------E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred hhhCCcccEEecCCCccccc--------c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhc
Confidence 6 799999999999887653 2 234689999999999998764 44588999999997655 667899999
Q ss_pred CCCCCCeeeCCCCCCc--ccCcccCCCCCCCEEeccCC
Q 047103 779 CLSSLVELDLSRNNFE--SLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 779 ~l~~L~~L~Ls~n~l~--~lp~~l~~L~~L~~L~L~~c 814 (1095)
.+++|+.|+|++|.+. .+|..+..+++|+.|++..+
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 9999999999999998 78888888988888888633
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2e-20 Score=222.63 Aligned_cols=323 Identities=18% Similarity=0.136 Sum_probs=229.8
Q ss_pred ccccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC---------CCCCCcceeecccCCC
Q 047103 508 CGAFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN---------EDKAPKLKYIDLNHSS 578 (1095)
Q Consensus 508 ~~~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~---------l~~l~~L~~L~Ls~n~ 578 (1095)
+.+|..+++|+.|++++|.++.... ..+...+......|++|++++|.+.. +..+++|++|+|++|.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGV----HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHH----HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHH----HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 4667888999999999998753211 01112222222379999999998773 3788999999999998
Q ss_pred CccccCC------CCCCccccEeeccCCccCcc----ccccccCCCCcceEeccCCCCCcccCCccc-----ccccce-e
Q 047103 579 NLTRIPE------PSETPNLDRMNLWNCTGLAL----IPSYIQNFNNLGNLSLEGCESLRCFPQNIH-----FVSSIK-I 642 (1095)
Q Consensus 579 ~l~~~p~------~~~l~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~-----~l~~L~-l 642 (1095)
+....+. ....++|++|+|++|..... ++..+..+++|++|+|++|......+..+. ..++|+ +
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 6543221 23467899999999987663 466677889999999999874433222222 245788 8
Q ss_pred eccCCcccCC----Ccc---ccCCceEEEecCCCCccc------cCccCCCCCCcEEeccCCCCCCc----cccccCCCC
Q 047103 643 NCSECVNLSE----FPR---ISGNVVELKLRHTPIEEV------PSSIDCLPDLETLEMSNCYSLKS----LSTNICKLK 705 (1095)
Q Consensus 643 ~l~~c~~L~~----~p~---~~~~L~~L~L~~n~i~~l------p~~i~~l~~L~~L~Ls~~~~l~~----lp~~l~~L~ 705 (1095)
.+++|.--.. ++. ...+|++|++++|.++.. +..+..+++|+.|++++|.+... ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 8888743321 333 346899999999998853 23345689999999999976653 677788899
Q ss_pred CCCEEEccCccccccccccccccCcccc-CCCCCCEEEecCCCCCCC----CCcccCCCccccccccCCCc--c-----c
Q 047103 706 SLRSLHLAFCEQLGKEASNIKELPSSIE-NLEGLRELQLMGCTKLGS----LPESLGNLKALEFLSAAGII--K-----I 773 (1095)
Q Consensus 706 ~L~~L~Ls~~~~~~~~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~----lp~~l~~L~~L~~L~l~~~~--~-----l 773 (1095)
+|++|++++|.+.+..+ ..++..+. ..++|+.|+|++|.+... ++..+..+++|+.|++++.. . +
T Consensus 285 ~L~~L~Ls~n~i~~~~~---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGA---RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp TCCEEECTTCCCHHHHH---HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred CcceEECCCCCCchHHH---HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 99999999997754221 12222222 346999999999998765 56667788999999887642 2 1
Q ss_pred CcccC-CCCCCCeeeCCCCCCc-----ccCcccCCCCCCCEEeccCCCCccc-------CCCCCCCccceeecccCc
Q 047103 774 PRDIG-CLSSLVELDLSRNNFE-----SLPSGISHLSRLKWLHLFDCIMLQS-------SLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 774 p~~l~-~l~~L~~L~Ls~n~l~-----~lp~~l~~L~~L~~L~L~~c~~l~~-------~lp~l~~sL~~L~l~~c~ 837 (1095)
...+. ..++|+.|+|++|.++ .+|..+..+++|++|+|++|+.... .+|....+|+.|.+.++.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 12222 2689999999999998 6888889999999999999975432 133333578888777665
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=8.1e-20 Score=205.77 Aligned_cols=240 Identities=20% Similarity=0.209 Sum_probs=179.1
Q ss_pred CCCcceeecccCCCCccccCC-CCCCccccEeeccCCcc-Ccccccccc-------CCCCcceEeccCCCCCcccCCcc-
Q 047103 565 KAPKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTG-LALIPSYIQ-------NFNNLGNLSLEGCESLRCFPQNI- 634 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~-l~~lp~~i~-------~L~~L~~L~L~~c~~l~~lp~~i- 634 (1095)
..++|+.|++++|.+ .+|. +.. .|+.|+|++|.. ...+|..+. ++++|++|+|++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 456789999999977 5554 332 299999999887 345666555 79999999999988777777755
Q ss_pred -cccccceeeccCCcccCCCccccCCceEEEecCCCCccccCccCCC-----CCCcEEeccCCCCCCccccccCCCCCCC
Q 047103 635 -HFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCL-----PDLETLEMSNCYSLKSLSTNICKLKSLR 708 (1095)
Q Consensus 635 -~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l-----~~L~~L~Ls~~~~l~~lp~~l~~L~~L~ 708 (1095)
..++ +|++|+|++|.++.+|..+..+ ++|++|+|++|.+.+..|..++++++|+
T Consensus 117 ~~~l~--------------------~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 117 EATGP--------------------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp SCCSC--------------------CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred HhcCC--------------------CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 3333 4569999999999888777766 9999999999998888889999999999
Q ss_pred EEEccCccccccccccccccCccc--cCCCCCCEEEecCCCCCC--CCC-cccCCCccccccccCC--CcccC--cccCC
Q 047103 709 SLHLAFCEQLGKEASNIKELPSSI--ENLEGLRELQLMGCTKLG--SLP-ESLGNLKALEFLSAAG--IIKIP--RDIGC 779 (1095)
Q Consensus 709 ~L~Ls~~~~~~~~~~~i~~lp~~l--~~l~~L~~L~L~~~~~~~--~lp-~~l~~L~~L~~L~l~~--~~~lp--~~l~~ 779 (1095)
+|++++|.+.+.. .+|..+ ..+++|+.|+|++|.+.+ .++ ..+.++++|+.|++++ +...+ ..+..
T Consensus 177 ~L~Ls~N~l~~~~-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 177 TLDLSDNPELGER-----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp EEECCSCTTCHHH-----HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred EEECCCCCcCcch-----HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 9999999876531 122333 789999999999998763 222 2345677888886655 33333 34556
Q ss_pred CCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCCCCC--CCccceeecccCc
Q 047103 780 LSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSLPEL--PPHLVMLDARNCK 837 (1095)
Q Consensus 780 l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l--~~sL~~L~l~~c~ 837 (1095)
+++|+.|+|++|.++.+|..+. ++|++|+|++|+. +. +|.+ .++|+.|++++|+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~-~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DR-NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CS-CCCTTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CC-ChhHhhCCCCCEEeccCCC
Confidence 7888888888888888887766 7888888888854 33 3443 2677888888776
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2.3e-17 Score=182.19 Aligned_cols=199 Identities=23% Similarity=0.230 Sum_probs=102.8
Q ss_pred cceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccC
Q 047103 568 KLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSE 646 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~ 646 (1095)
+|++|+|++|.+....+ .+..+++|++|+|++|......+..+.++++|++|+|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------- 86 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---------------------- 86 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC----------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC----------------------
Confidence 45555555554443333 3455555555555555444433344555555555555554
Q ss_pred CcccCCCccccCCceEEEecCCCCcccc-CccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccc
Q 047103 647 CVNLSEFPRISGNVVELKLRHTPIEEVP-SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNI 725 (1095)
Q Consensus 647 c~~L~~~p~~~~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i 725 (1095)
.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 87 ----------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 139 (276)
T 2z62_A 87 ----------------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----- 139 (276)
T ss_dssp ----------------------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----
T ss_pred ----------------------ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----
Confidence 444333 2344455555555555544443333455555555555555443321
Q ss_pred cccCccccCCCCCCEEEecCCCCCCCCCcccCCCcccc----cccc--CCCcccCcccCCCCCCCeeeCCCCCCcccCcc
Q 047103 726 KELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALE----FLSA--AGIIKIPRDIGCLSSLVELDLSRNNFESLPSG 799 (1095)
Q Consensus 726 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~----~L~l--~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 799 (1095)
.+|..+.++++|+.|+|++|.+.+..+..+..+++|+ .|++ +.+..++.......+|+.|+|++|.++.+|..
T Consensus 140 -~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 140 -KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred -cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh
Confidence 1344455555555555555555444444443333333 2222 12334444444445788888888888877764
Q ss_pred -cCCCCCCCEEeccCCCC
Q 047103 800 -ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 800 -l~~L~~L~~L~L~~c~~ 816 (1095)
+..+++|+.|+|++|+.
T Consensus 219 ~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTTTCCSCCEEECCSSCB
T ss_pred HhcccccccEEEccCCcc
Confidence 46778888888887754
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=3.7e-17 Score=181.84 Aligned_cols=201 Identities=17% Similarity=0.132 Sum_probs=150.3
Q ss_pred CCCCCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccce
Q 047103 563 EDKAPKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK 641 (1095)
Q Consensus 563 l~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 641 (1095)
+..+++|+.++++++.+. .+| .+. ++|+.|+|++|......+..+..+++|++|+|++|.. ..+|.. ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~----- 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GT----- 75 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SC-----
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CC-----
Confidence 346778888899887654 444 343 6899999999988777778899999999999998653 333321 21
Q ss_pred eeccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccc
Q 047103 642 INCSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKE 721 (1095)
Q Consensus 642 l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~ 721 (1095)
..+|+.|+|++|.++.+|..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+.
T Consensus 76 ---------------l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~- 139 (290)
T 1p9a_G 76 ---------------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL- 139 (290)
T ss_dssp ---------------CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-
T ss_pred ---------------CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-
Confidence 2356688888888888888888888899999988887766667788888888888888765542
Q ss_pred cccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccC
Q 047103 722 ASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGIS 801 (1095)
Q Consensus 722 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~ 801 (1095)
.+..+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.++.+|..+.
T Consensus 140 ------~~~~~~~l~~L~~L~L~~N~l~~l~~---------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 140 ------PPGLLTPTPKLEKLSLANNNLTELPA---------------------GLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCCSCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ------ChhhcccccCCCEEECCCCcCCccCH---------------------HHhcCcCCCCEEECCCCcCCccChhhc
Confidence 12235677888888888876542221 234567888999999999999998888
Q ss_pred CCCCCCEEeccCCCC
Q 047103 802 HLSRLKWLHLFDCIM 816 (1095)
Q Consensus 802 ~L~~L~~L~L~~c~~ 816 (1095)
.+++|+.|+|++|+.
T Consensus 193 ~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCCSEEECCSCCB
T ss_pred ccccCCeEEeCCCCc
Confidence 888889998888864
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.4e-16 Score=172.21 Aligned_cols=196 Identities=20% Similarity=0.267 Sum_probs=125.5
Q ss_pred cceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCc-ccccccceeecc
Q 047103 568 KLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQN-IHFVSSIKINCS 645 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~l~l~ 645 (1095)
+++.++++++.+. .+|. + .++|++|+|++|......+..|.++++|++|+|++|... .+|.. +..++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~------- 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK------- 85 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCT-------
T ss_pred CCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCC-------
Confidence 3556666666433 3443 2 256777888777766555557777778888887775433 33322 22222
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASN 724 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~ 724 (1095)
+|++|+|++|.++.+|.. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+
T Consensus 86 -------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----- 147 (270)
T 2o6q_A 86 -------------NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS----- 147 (270)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred -------------CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-----
Confidence 344666667777666643 4667777777777777666666666777777777777765443
Q ss_pred ccccCc-cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcc-cCC
Q 047103 725 IKELPS-SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISH 802 (1095)
Q Consensus 725 i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~ 802 (1095)
+|. .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.++.+|.. +..
T Consensus 148 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 148 ---LPKGVFDKLTSLKELRLYNNQLKRVPE---------------------GAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCSCCCT---------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ---cCHhHccCCcccceeEecCCcCcEeCh---------------------hHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 232 25666777777777765443222 2356677888888888888887764 677
Q ss_pred CCCCCEEeccCCCC
Q 047103 803 LSRLKWLHLFDCIM 816 (1095)
Q Consensus 803 L~~L~~L~L~~c~~ 816 (1095)
+++|+.|+|++|+.
T Consensus 204 l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 204 LEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCB
T ss_pred ccCCCEEEecCCCe
Confidence 88888888888864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=6.5e-17 Score=178.18 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=124.6
Q ss_pred CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 565 KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
.+++|+.|++++|. ...++.+..+++|++|+|++|.... + ..+..+++|++|+|++|......|..+..++
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~------ 109 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT------ 109 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc------
Confidence 45667777777764 3455667777777777777776544 2 3567777777777777644333333233333
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 110 --------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 172 (272)
T 3rfs_A 110 --------------NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL--- 172 (272)
T ss_dssp --------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---
T ss_pred --------------CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc---
Confidence 334666666666666544 56677777777777766555555566777777777777655431
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHL 803 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L 803 (1095)
.+..+..+++|+.|++++|.+.+..|. .+..+++|+.|+|++|.+. +.+
T Consensus 173 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~l~~N~~~------~~~ 221 (272)
T 3rfs_A 173 ----PEGVFDKLTQLKDLRLYQNQLKSVPDG---------------------VFDRLTSLQYIWLHDNPWD------CTC 221 (272)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSCCCTT---------------------TTTTCTTCCEEECCSSCBC------CCT
T ss_pred ----CHHHhcCCccCCEEECCCCcCCccCHH---------------------HHhCCcCCCEEEccCCCcc------ccC
Confidence 122346667777777777665543332 3456677778888887654 335
Q ss_pred CCCCEEeccCCCCcccCCCCCC
Q 047103 804 SRLKWLHLFDCIMLQSSLPELP 825 (1095)
Q Consensus 804 ~~L~~L~L~~c~~l~~~lp~l~ 825 (1095)
++|+.|+++.|..... +|...
T Consensus 222 ~~l~~l~~~~n~~~g~-ip~~~ 242 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGV-VRNSA 242 (272)
T ss_dssp TTTHHHHHHHHHTGGG-BBCTT
T ss_pred cHHHHHHHHHHhCCCc-ccCcc
Confidence 5677777777765544 55433
No 81
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.70 E-value=6.8e-19 Score=173.81 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=87.1
Q ss_pred CCcccccccCcchHH-HHHHHhhC--CCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHh
Q 047103 1 METTGEDTRVIFISH-LYAALCRK--KIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILD 77 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~-l~~~l~~~--gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~ 77 (1095)
|||+|+|+ +||.| |+.+|+++ |+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||..++.
T Consensus 10 iSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~ 87 (149)
T 1fyx_A 10 VSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHF 87 (149)
T ss_dssp EECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCC
T ss_pred EECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHH
Confidence 69999996 79997 99999997 999999999999999999999999999999999999999999999999999985
Q ss_pred -ccccCCCeEEeEEee-eccccc
Q 047103 78 -CKKANDQIVIPVFYN-VSPFSV 98 (1095)
Q Consensus 78 -~~~~~~~~v~pvfy~-v~ps~v 98 (1095)
+.++++++||||||+ +++.++
T Consensus 88 ~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 88 RLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp TTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHhcCCCEEEEEEecCCChhhc
Confidence 456677889999997 555433
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=186.30 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=125.2
Q ss_pred CCccccEeeccCCccCccccccc--cCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEe
Q 047103 588 ETPNLDRMNLWNCTGLALIPSYI--QNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKL 665 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp~~i--~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L 665 (1095)
.+++|++|+|++|...+..|..+ ..+++|++|+|++|......|. +. .+. + ....+|++|+|
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~---~~~-----------~-~~~~~L~~L~L 152 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LA---ELQ-----------Q-WLKPGLKVLSI 152 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HH---HHH-----------T-TBCSCCCEEEE
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hH---HHH-----------h-hhccCCCEEEe
Confidence 34567788887777777777766 7778888888887665443221 00 000 0 01235667888
Q ss_pred cCCCCcccc-CccCCCCCCcEEeccCCCCCCc--cc--cccCCCCCCCEEEccCccccccccccccccCcc-ccCCCCCC
Q 047103 666 RHTPIEEVP-SSIDCLPDLETLEMSNCYSLKS--LS--TNICKLKSLRSLHLAFCEQLGKEASNIKELPSS-IENLEGLR 739 (1095)
Q Consensus 666 ~~n~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~--lp--~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~-l~~l~~L~ 739 (1095)
++|.+..+| ..+..+++|++|+|++|.+.+. ++ ..+..+++|++|+|++|.+... ...+.. +.++++|+
T Consensus 153 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 153 AQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-----TGVCAALAAAGVQPH 227 (310)
T ss_dssp ECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----HHHHHHHHHHTCCCS
T ss_pred eCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----HHHHHHHHhcCCCCC
Confidence 888887665 4577888888888888876542 22 2236788888888888766421 111222 46778888
Q ss_pred EEEecCCCCCCCCCcccCCC---ccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCC
Q 047103 740 ELQLMGCTKLGSLPESLGNL---KALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~~l~~L---~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c 814 (1095)
+|+|++|.+.+..|..+..+ ++|+.|++++ +..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSST
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCC
Confidence 88888888777766655554 3455443332 334444442 566666666666665543 455566666666666
Q ss_pred CC
Q 047103 815 IM 816 (1095)
Q Consensus 815 ~~ 816 (1095)
+.
T Consensus 305 ~l 306 (310)
T 4glp_A 305 PF 306 (310)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=8.8e-17 Score=173.46 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=19.9
Q ss_pred cCCC-CCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCC
Q 047103 777 IGCL-SSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 777 l~~l-~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~ 815 (1095)
+..+ ++|+.|+|++|+++.+|.. .+++|+.|++++|.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred hhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 3444 5556666666666555543 45555555555543
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.9e-16 Score=174.79 Aligned_cols=200 Identities=20% Similarity=0.164 Sum_probs=149.4
Q ss_pred CCCCcceEEcccCCCC-----CCCCCCcceeecccCCCCccccC-CCCCCccccEeeccCCccCccccccccCCCCcceE
Q 047103 546 LPKELRYLHWHQYPLK-----NEDKAPKLKYIDLNHSSNLTRIP-EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNL 619 (1095)
Q Consensus 546 l~~~Lr~L~l~~~~l~-----~l~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 619 (1095)
+|..|++|+++++.+. .+..+++|++|+|++|.+....+ .+..+++|++|+|++|......+..+.++++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4568999999999876 45778999999999997766555 38999999999999999888777889999999999
Q ss_pred eccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCcc--ccCccCCCCCCcEEeccCCCCCCcc
Q 047103 620 SLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEE--VPSSIDCLPDLETLEMSNCYSLKSL 697 (1095)
Q Consensus 620 ~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~Ls~~~~l~~l 697 (1095)
++++|......+..+..++ +|++|++++|.++. +|..+..+++|+.|+|++|.+.+..
T Consensus 106 ~l~~n~l~~~~~~~~~~l~--------------------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLK--------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCT--------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCCccccCchhcccCC--------------------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 9999765443333343333 45578888888875 6777888888888888888777666
Q ss_pred ccccCCCCCCC----EEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCccc
Q 047103 698 STNICKLKSLR----SLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKI 773 (1095)
Q Consensus 698 p~~l~~L~~L~----~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~l 773 (1095)
+..+..+++|+ .|++++|.+.+ +|.......+|+.|+|++|.+.+..+
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------- 217 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNF--------IQPGAFKEIRLKELALDTNQLKSVPD-------------------- 217 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCE--------ECTTSSCSCCEEEEECCSSCCSCCCT--------------------
T ss_pred HHHhhhhhhccccceeeecCCCcccc--------cCccccCCCcccEEECCCCceeecCH--------------------
Confidence 66666555555 78888765543 33334444578888888777543222
Q ss_pred CcccCCCCCCCeeeCCCCCCc
Q 047103 774 PRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 774 p~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
..+..+++|+.|+|++|.+.
T Consensus 218 -~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 218 -GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -TTTTTCCSCCEEECCSSCBC
T ss_pred -hHhcccccccEEEccCCccc
Confidence 23567889999999999876
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.5e-16 Score=178.46 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=124.8
Q ss_pred CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 565 KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
.+++|+.|++++|.+ ..+|.+..+++|++|+|++|..... +. +..+++|++|+|++|. +..+| .+..+
T Consensus 39 ~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l------- 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP-LKNVS-AIAGL------- 106 (308)
T ss_dssp HHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC-CSCCG-GGTTC-------
T ss_pred HcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCc-CCCch-hhcCC-------
Confidence 456777777777743 4456677788888888887765443 33 7778888888888765 33332 12222
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASN 724 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~ 724 (1095)
.+|+.|++++|.++.+|. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 107 -------------~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----- 165 (308)
T 1h6u_A 107 -------------QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD----- 165 (308)
T ss_dssp -------------TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----
T ss_pred -------------CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-----
Confidence 234567777777776664 6677777777777766544332 6667777777777765443
Q ss_pred ccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCC
Q 047103 725 IKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLS 804 (1095)
Q Consensus 725 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~ 804 (1095)
++. +..+++|+.|++++|.+.+. +. +..+++|+.|+|++|.++.++. +..++
T Consensus 166 ---~~~-l~~l~~L~~L~l~~n~l~~~----------------------~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 166 ---LTP-LANLSKLTTLKADDNKISDI----------------------SP-LASLPNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp ---CGG-GTTCTTCCEEECCSSCCCCC----------------------GG-GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred ---Chh-hcCCCCCCEEECCCCccCcC----------------------hh-hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence 222 56667777777776654321 11 4556788888888888887774 77888
Q ss_pred CCCEEeccCCCC
Q 047103 805 RLKWLHLFDCIM 816 (1095)
Q Consensus 805 ~L~~L~L~~c~~ 816 (1095)
+|+.|+|++|+.
T Consensus 218 ~L~~L~l~~N~i 229 (308)
T 1h6u_A 218 NLFIVTLTNQTI 229 (308)
T ss_dssp TCCEEEEEEEEE
T ss_pred CCCEEEccCCee
Confidence 888888888763
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=9.7e-17 Score=176.75 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=91.3
Q ss_pred CCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
..+++|++|+|++|.+. .++.+..+++|++|+|++|......+..+.++++|++|+|++|......|..+..+++|
T Consensus 60 ~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--- 135 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL--- 135 (272)
T ss_dssp GGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC---
T ss_pred ccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC---
Confidence 34556666666666533 34556667777777777766655555556677777777777765443333333433333
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEA 722 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~ 722 (1095)
+.|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 136 -----------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 196 (272)
T 3rfs_A 136 -----------------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-- 196 (272)
T ss_dssp -----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred -----------------CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc--
Confidence 3555666666555543 35666666666666655554444456666666666666654431
Q ss_pred ccccccCccccCCCCCCEEEecCCCCCC
Q 047103 723 SNIKELPSSIENLEGLRELQLMGCTKLG 750 (1095)
Q Consensus 723 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 750 (1095)
.|..+..+++|+.|+|++|++.+
T Consensus 197 -----~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 197 -----PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----CHHHHhCCcCCCEEEccCCCccc
Confidence 12234556666666666665443
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=9.7e-16 Score=168.54 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=119.6
Q ss_pred ccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcceeecccCCCCccccCC-CCCC
Q 047103 516 NLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKLKYIDLNHSSNLTRIPE-PSET 589 (1095)
Q Consensus 516 ~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L~~L~Ls~n~~l~~~p~-~~~l 589 (1095)
+++.++++++.++.+|. .+|..++.|+++++.+.. +..+++|++|+|++|.+....+. +..+
T Consensus 17 ~~~~l~~~~~~l~~ip~------------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS------------NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCSSCCS------------CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCEEEccCCCCCccCC------------CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 35566666666655443 123345555555554433 34566777777777754433333 4667
Q ss_pred ccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCC
Q 047103 590 PNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTP 669 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~ 669 (1095)
++|++|+|++|......+..+..+++|++|+|++|......|..+..++ +|++|+|++|.
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------~L~~L~Ls~n~ 144 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--------------------KLTYLSLGYNE 144 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT--------------------TCCEEECCSSC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc--------------------CCCEEECCCCc
Confidence 7777777777665555455566777777777776554333333333333 34577777777
Q ss_pred CccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc-cccCCCCCCEEEecCCC
Q 047103 670 IEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS-SIENLEGLRELQLMGCT 747 (1095)
Q Consensus 670 i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~l~~l~~L~~L~L~~~~ 747 (1095)
++.+|.. +..+++|+.|+|++|.+....+..+..+++|++|+|++|.+.+ +|. .+..+++|+.|+|++|+
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--------VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc--------CCHHHhccccCCCEEEecCCC
Confidence 7777655 5777778888887777666555567777778888887775543 222 35667777777777776
Q ss_pred CCC
Q 047103 748 KLG 750 (1095)
Q Consensus 748 ~~~ 750 (1095)
+..
T Consensus 217 ~~c 219 (270)
T 2o6q_A 217 WDC 219 (270)
T ss_dssp BCC
T ss_pred eeC
Confidence 543
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=8.5e-16 Score=170.79 Aligned_cols=198 Identities=18% Similarity=0.155 Sum_probs=139.0
Q ss_pred ccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCC-----CCCCCcceeecccCCCCccccC
Q 047103 510 AFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKN-----EDKAPKLKYIDLNHSSNLTRIP 584 (1095)
Q Consensus 510 ~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----l~~l~~L~~L~Ls~n~~l~~~p 584 (1095)
.+.++++|+.++++++.++.+|.. ++..++.|++++|.+.. +..+++|++|+|++|.+.. ++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~------------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPD------------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSC------------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE
T ss_pred cccccCCccEEECCCCCCCcCCCC------------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-cc
Confidence 367788999999999888776642 23577788888777654 3667788888888875443 44
Q ss_pred CCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEE
Q 047103 585 EPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELK 664 (1095)
Q Consensus 585 ~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~ 664 (1095)
....+++|++|+|++|... .+|..+..+++|++|+|++|......|..+..++ +|+.|+
T Consensus 72 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~--------------------~L~~L~ 130 (290)
T 1p9a_G 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--------------------ELQELY 130 (290)
T ss_dssp CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT--------------------TCCEEE
T ss_pred CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC--------------------CCCEEE
Confidence 4477788888888877543 6677777788888888887654433334444333 345778
Q ss_pred ecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEe
Q 047103 665 LRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQL 743 (1095)
Q Consensus 665 L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L 743 (1095)
|++|.++.+|.. +..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..+..+.+|+.|+|
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--------~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--------TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCCCSEEEC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--------ccChhhcccccCCeEEe
Confidence 888888877765 467888888888887766544445677888888888886543 46666777778888888
Q ss_pred cCCCCC
Q 047103 744 MGCTKL 749 (1095)
Q Consensus 744 ~~~~~~ 749 (1095)
++|+..
T Consensus 203 ~~Np~~ 208 (290)
T 1p9a_G 203 HGNPWL 208 (290)
T ss_dssp CSCCBC
T ss_pred CCCCcc
Confidence 887743
No 89
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.68 E-value=4.1e-18 Score=169.92 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=85.4
Q ss_pred CCcccccccCcchHHHHHHHhhC--CCeEEecCCCCCCCCcccHHHHhhcc-CceEEEEEecCCccchhhhHHHHHHHHh
Q 047103 1 METTGEDTRVIFISHLYAALCRK--KIKTFTDNEDLNRGDEISPALLNAIE-GSKISVIIFSKGYASSKWCLNELVKILD 77 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~l~~~l~~~--gi~~f~d~~~~~~g~~i~~~l~~ai~-~s~~~ivv~S~~ya~s~wcl~El~~i~~ 77 (1095)
|||+|+| .+||+||+.+|+++ |+++|+|++++.+|+.|.++|.+||+ .|+++|+|+|++|++|.||+.|+..+++
T Consensus 21 ISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~ 98 (160)
T 2js7_A 21 ICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALS 98 (160)
T ss_dssp EECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHH
T ss_pred EEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHH
Confidence 6999999 68999999999995 69999999999999999999999999 7999999999999999999999999999
Q ss_pred cc-ccCCCeEEeEEeeecc
Q 047103 78 CK-KANDQIVIPVFYNVSP 95 (1095)
Q Consensus 78 ~~-~~~~~~v~pvfy~v~p 95 (1095)
+. ++.+++||||||+.-+
T Consensus 99 ~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 99 LSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HCTTHHHHTEEEEESSCCC
T ss_pred HHHccCCCEEEEEEEcccc
Confidence 86 4455789999999643
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=3.9e-16 Score=178.60 Aligned_cols=153 Identities=19% Similarity=0.138 Sum_probs=89.3
Q ss_pred CCCCCcceeecccCCCCccccCC--CCCCccccEe-eccCCccCccccccccCCCCcceEeccCCCCCcccCCccccccc
Q 047103 563 EDKAPKLKYIDLNHSSNLTRIPE--PSETPNLDRM-NLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS 639 (1095)
Q Consensus 563 l~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L-~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~ 639 (1095)
+.++++|++|+|++|.+.+.+|. |.++++|.++ .+.+|......|..|..+++|++|++++|......+..+.....
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 35678899999999887777664 6788887764 44445555555677888999999999886544333333333334
Q ss_pred ce-eeccCCcccCCCccc-----cCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccc-cCCCCCCCEEEc
Q 047103 640 IK-INCSECVNLSEFPRI-----SGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTN-ICKLKSLRSLHL 712 (1095)
Q Consensus 640 L~-l~l~~c~~L~~~p~~-----~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~-l~~L~~L~~L~L 712 (1095)
+. +.+.+++.+..+|.. ...++.|+|++|.|+.+|..+....+|+.|++++|+.++.+|.. |..+++|++|+|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 44 555555555544421 12345555555555555555544555555555554444444432 344444444444
Q ss_pred cCc
Q 047103 713 AFC 715 (1095)
Q Consensus 713 s~~ 715 (1095)
++|
T Consensus 210 s~N 212 (350)
T 4ay9_X 210 SRT 212 (350)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 91
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.67 E-value=5.9e-18 Score=171.40 Aligned_cols=90 Identities=19% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCcccccccCcchHH-HHHHHhh--CCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHh
Q 047103 1 METTGEDTRVIFISH-LYAALCR--KKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILD 77 (1095)
Q Consensus 1 ~sfrg~d~r~~f~~~-l~~~l~~--~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~ 77 (1095)
|||+|+|+ +||.+ |+.+|++ +|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||..++.
T Consensus 40 ISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~ 117 (178)
T 2j67_A 40 ISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHH 117 (178)
T ss_dssp EECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTC
T ss_pred EECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHH
Confidence 69999995 89985 9999999 8999999999999999999999999999999999999999999999999999997
Q ss_pred cc-ccCCCeEEeEEee
Q 047103 78 CK-KANDQIVIPVFYN 92 (1095)
Q Consensus 78 ~~-~~~~~~v~pvfy~ 92 (1095)
+. ++++++||||||+
T Consensus 118 ~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 118 NLFHENSDHIILILLE 133 (178)
T ss_dssp C-------CEEEEESS
T ss_pred HHHhcCCCEEEEEEec
Confidence 54 5667889999998
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.4e-16 Score=167.91 Aligned_cols=205 Identities=17% Similarity=0.163 Sum_probs=124.5
Q ss_pred ccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCC-cccccccceeeccCCcccCCCccccC
Q 047103 580 LTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQ-NIHFVSSIKINCSECVNLSEFPRISG 658 (1095)
Q Consensus 580 l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~l~l~~c~~L~~~p~~~~ 658 (1095)
++.+|. -.++|++|+|++|......+..+.++++|++|+|++|..++.+|. .+..++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-------------------- 80 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-------------------- 80 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT--------------------
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc--------------------
Confidence 555665 334778888887776555555777777777777777654544443 233232
Q ss_pred CceEEEecC-CCCccccC-ccCCCCCCcEEeccCCCCCCccccccCCCCCCC---EEEccCc-cccccccccccccCc-c
Q 047103 659 NVVELKLRH-TPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLR---SLHLAFC-EQLGKEASNIKELPS-S 731 (1095)
Q Consensus 659 ~L~~L~L~~-n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~---~L~Ls~~-~~~~~~~~~i~~lp~-~ 731 (1095)
+|++|++++ |.++.+|. .+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+. .+|. .
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~--------~i~~~~ 150 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT--------SIPVNA 150 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC--------EECTTT
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh--------hcCccc
Confidence 233555555 55555553 34556666666666655433 443 45555555 5555554 222 1221 2
Q ss_pred ccCCCCCC-EEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCC-CCcccCc-ccCCC-CCCC
Q 047103 732 IENLEGLR-ELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRN-NFESLPS-GISHL-SRLK 807 (1095)
Q Consensus 732 l~~l~~L~-~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~-~l~~L-~~L~ 807 (1095)
+.++++|+ .|++++|. +..+|......++|+.|+|++| .++.+|. .+..+ ++|+
T Consensus 151 ~~~l~~L~~~L~l~~n~----------------------l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNG----------------------FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp TTTTBSSEEEEECCSCC----------------------CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred ccchhcceeEEEcCCCC----------------------CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 44455555 55555544 3345554444479999999999 4998865 57888 9999
Q ss_pred EEeccCCCCcccCCCCCCCccceeecccCccC
Q 047103 808 WLHLFDCIMLQSSLPELPPHLVMLDARNCKRL 839 (1095)
Q Consensus 808 ~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~~L 839 (1095)
.|+|++|+.. ...+..+++|+.|++.++..|
T Consensus 209 ~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 209 LLDVSQTSVT-ALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp EEECTTCCCC-CCCCTTCTTCSEEECTTC---
T ss_pred EEECCCCccc-cCChhHhccCceeeccCccCC
Confidence 9999998654 413345789999999988754
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=9.2e-18 Score=190.82 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=138.1
Q ss_pred CcceeecccCCCCccccCCCCCCccccEeeccCCccCcc-ccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLAL-IPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|+.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|++|+|++|......|..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L----- 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL----- 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC-----
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC-----
Confidence 567888888887776777777888888888888876554 77778888888888888886555555555544444
Q ss_pred CCcccCCCccccCCceEEEecCC-CCc--cccCccCCCCCCcEEeccCC-CCCCc-cccccCCCC-CCCEEEccCcc--c
Q 047103 646 ECVNLSEFPRISGNVVELKLRHT-PIE--EVPSSIDCLPDLETLEMSNC-YSLKS-LSTNICKLK-SLRSLHLAFCE--Q 717 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n-~i~--~lp~~i~~l~~L~~L~Ls~~-~~l~~-lp~~l~~L~-~L~~L~Ls~~~--~ 717 (1095)
++|+|++| .++ .+|..+..+++|++|++++| .+... ++..+..++ +|++|++++|. +
T Consensus 145 ---------------~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 145 ---------------VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ---------------SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ---------------CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 45666665 455 25555667777777777777 44432 566666777 78888877773 2
Q ss_pred cccccccccccCccccCCCCCCEEEecCCC-CCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCC-Cc-
Q 047103 718 LGKEASNIKELPSSIENLEGLRELQLMGCT-KLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNN-FE- 794 (1095)
Q Consensus 718 ~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~-~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~-l~- 794 (1095)
.. ..+|..+.++++|+.|++++|. +....+. .+..+++|+.|+|++|. +.
T Consensus 210 ~~------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 210 QK------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---------------------EFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp CH------HHHHHHHHHCTTCSEEECTTCTTCCGGGGG---------------------GGGGCTTCCEEECTTCTTCCG
T ss_pred CH------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---------------------HHhCCCCCCEeeCCCCCCCCH
Confidence 21 1344455667778888877776 3333333 33444566666666663 21
Q ss_pred ccCcccCCCCCCCEEeccCCCCcccCCCCCCCccceeecccCc
Q 047103 795 SLPSGISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLDARNCK 837 (1095)
Q Consensus 795 ~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~l~~c~ 837 (1095)
.....+.++++|+.|+|++| .-...+..+..+|..|++++|.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEeccc
Confidence 11113556667777777666 1111122233446666665444
No 94
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.67 E-value=8.7e-18 Score=167.38 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCcccccc---------cCcchHHHHH-HHh-hCCCeEEecCCCCCCCCcccHHHHhhccCceEEEEEecCCcc-chhhh
Q 047103 1 METTGEDT---------RVIFISHLYA-ALC-RKKIKTFTDNEDLNRGDEISPALLNAIEGSKISVIIFSKGYA-SSKWC 68 (1095)
Q Consensus 1 ~sfrg~d~---------r~~f~~~l~~-~l~-~~gi~~f~d~~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya-~s~wc 68 (1095)
|||+|+|+ |++||.||+. +|+ ++|+++|+|++++.+|+.|.++|.+||++|+.+|||+|+||+ +|.||
T Consensus 7 ISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc 86 (159)
T 1t3g_A 7 LSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWS 86 (159)
T ss_dssp EECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTH
T ss_pred EeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHH
Confidence 69999997 6889999776 699 799999999999999999999999999999999999999996 99999
Q ss_pred HHHHHHHHhcc-ccCCCeEEeEEeeeccc
Q 047103 69 LNELVKILDCK-KANDQIVIPVFYNVSPF 96 (1095)
Q Consensus 69 l~El~~i~~~~-~~~~~~v~pvfy~v~ps 96 (1095)
+.|+..++.|. +++++.||||||.-.|.
T Consensus 87 ~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 87 IFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 99999999986 66778999999985554
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.8e-17 Score=186.78 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=130.6
Q ss_pred ccccccC--CccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCCCCcceeecccCCCCccc-cC
Q 047103 508 CGAFKNM--PNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDKAPKLKYIDLNHSSNLTR-IP 584 (1095)
Q Consensus 508 ~~~f~~m--~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~l~~L~~L~Ls~n~~l~~-~p 584 (1095)
+..+..+ ++++.|++.+|.+...+. .+..+++|++|+|++|.+... +|
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-----------------------------~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-----------------------------EHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-----------------------------SCCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccch-----------------------------hhccCCCCCEEEccCCCcCHHHHH
Confidence 5566666 788888888877643321 123467888999998875543 44
Q ss_pred C-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCc--ccCCcccccccceeeccCCcccCCCccccCCce
Q 047103 585 E-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLR--CFPQNIHFVSSIKINCSECVNLSEFPRISGNVV 661 (1095)
Q Consensus 585 ~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~--~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~ 661 (1095)
. +..+++|++|+|++|......+..++.+++|++|+|++|..++ .+|..+..+++ |+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~--------------------L~ 171 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR--------------------LD 171 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT--------------------CC
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC--------------------CC
Confidence 3 6888999999999998777788888889999999999985554 24444444444 45
Q ss_pred EEEecCC-CCcc--ccCccCCCC-CCcEEeccCCC--CC-CccccccCCCCCCCEEEccCccccccccccccccCccccC
Q 047103 662 ELKLRHT-PIEE--VPSSIDCLP-DLETLEMSNCY--SL-KSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIEN 734 (1095)
Q Consensus 662 ~L~L~~n-~i~~--lp~~i~~l~-~L~~L~Ls~~~--~l-~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~ 734 (1095)
+|++++| .++. ++..+..++ +|++|+|++|. .. +.+|..+.++++|++|++++|...+. ..+..+..
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~~~~~l~~ 245 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFQ 245 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------GGGGGGGG
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------HHHHHHhC
Confidence 6777777 6663 566677778 88888888874 33 45666677788888888888873221 23345677
Q ss_pred CCCCCEEEecCCC
Q 047103 735 LEGLRELQLMGCT 747 (1095)
Q Consensus 735 l~~L~~L~L~~~~ 747 (1095)
+++|+.|++++|.
T Consensus 246 l~~L~~L~l~~~~ 258 (336)
T 2ast_B 246 LNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCCEEECTTCT
T ss_pred CCCCCEeeCCCCC
Confidence 7888888888875
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=173.79 Aligned_cols=197 Identities=18% Similarity=0.142 Sum_probs=101.1
Q ss_pred CcceeecccCCCCccccCC-C--CCCccccEeeccCCccCcccc----ccccCCCCcceEeccCCCCCcccCCccccccc
Q 047103 567 PKLKYIDLNHSSNLTRIPE-P--SETPNLDRMNLWNCTGLALIP----SYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS 639 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~--~~l~~L~~L~L~~~~~l~~lp----~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~ 639 (1095)
++|++|+|++|.+....|. + ..+++|++|+|++|......+ ..+..+++|++|+|++|......|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4566667766666555554 3 666777777777766655433 23445667777777766654444444544444
Q ss_pred ceeeccCCcccCCCccccCCceEEEecCCCCcc---ccC--ccCCCCCCcEEeccCCCCCCcccc----ccCCCCCCCEE
Q 047103 640 IKINCSECVNLSEFPRISGNVVELKLRHTPIEE---VPS--SIDCLPDLETLEMSNCYSLKSLST----NICKLKSLRSL 710 (1095)
Q Consensus 640 L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~---lp~--~i~~l~~L~~L~Ls~~~~l~~lp~----~l~~L~~L~~L 710 (1095)
|+ +|+|++|.+.. ++. .+..+++|++|+|++|.+. .++. .+..+++|++|
T Consensus 171 L~--------------------~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 171 LT--------------------SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp CC--------------------EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSE
T ss_pred CC--------------------EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEE
Confidence 44 44444444331 211 1234445555555554432 1111 12344555555
Q ss_pred EccCccccccccccccccCccccCC---CCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCe
Q 047103 711 HLAFCEQLGKEASNIKELPSSIENL---EGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVE 785 (1095)
Q Consensus 711 ~Ls~~~~~~~~~~~i~~lp~~l~~l---~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~ 785 (1095)
+|++|.+.+.. |..+..+ ++|++|+|++|.+. .+|..+. ++|+.|++++ +..+|. +..+++|+.
T Consensus 230 ~Ls~N~l~~~~-------p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 230 DLSHNSLRATV-------NPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp ECTTSCCCCCC-------CSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred ECCCCCCCccc-------hhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 55554443321 2222222 35555555555444 3343332 4444443332 333443 567789999
Q ss_pred eeCCCCCCcc
Q 047103 786 LDLSRNNFES 795 (1095)
Q Consensus 786 L~Ls~n~l~~ 795 (1095)
|+|++|.|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998863
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.5e-17 Score=193.00 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=20.2
Q ss_pred CCCCCeeeCCCCCCcc-----cCccc-CCCCCCCEEeccCCC
Q 047103 780 LSSLVELDLSRNNFES-----LPSGI-SHLSRLKWLHLFDCI 815 (1095)
Q Consensus 780 l~~L~~L~Ls~n~l~~-----lp~~l-~~L~~L~~L~L~~c~ 815 (1095)
+++|+.|+|++|.++. +|..+ .++++|++|+|++|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5556666666665554 55544 445556666665554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.2e-15 Score=170.97 Aligned_cols=215 Identities=18% Similarity=0.117 Sum_probs=124.2
Q ss_pred ccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCc-ccccccceeeccCCcccCCCccccCCceEEEecCC
Q 047103 590 PNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQN-IHFVSSIKINCSECVNLSEFPRISGNVVELKLRHT 668 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n 668 (1095)
++|++|+|++|.+....+.+|.++++|++|+|++|..++.+|.. +.++++|. +.+.+.+|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~-------------------~~l~~~~N 90 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH-------------------EIRIEKAN 90 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC-------------------EEEEEEET
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh-------------------hhhcccCC
Confidence 46777777776554333345677777777777777666655542 33444433 22334445
Q ss_pred CCcccc-CccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc-cccCC-CCCCEEEecC
Q 047103 669 PIEEVP-SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS-SIENL-EGLRELQLMG 745 (1095)
Q Consensus 669 ~i~~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~l~~l-~~L~~L~L~~ 745 (1095)
.++.+| ..+..+++|++|++++|.+....+..+....++..|++.++.... .+|. .+..+ ..|+.|+|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-------~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------TIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-------EECTTSSTTSBSSCEEEECCS
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-------cccccchhhcchhhhhhcccc
Confidence 555553 335666666666666665554444444455556666665543222 2221 23333 3466666666
Q ss_pred CCCCCCCCcccCCCccccccccC---CCcccCc-ccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCcccCC
Q 047103 746 CTKLGSLPESLGNLKALEFLSAA---GIIKIPR-DIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIMLQSSL 821 (1095)
Q Consensus 746 ~~~~~~lp~~l~~L~~L~~L~l~---~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~~l 821 (1095)
|.+.. +|.......+|+.|.+. .+..+|. .+..+++|+.|+|++|+|+.+|.. .+.+|+.|.+.+|..++. +
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~-l 239 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKK-L 239 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCC-C
T ss_pred ccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCc-C
Confidence 66543 33333344455555332 2455654 467788888999999988888863 367788888888877777 6
Q ss_pred CCCC--Cccceeecc
Q 047103 822 PELP--PHLVMLDAR 834 (1095)
Q Consensus 822 p~l~--~sL~~L~l~ 834 (1095)
|.+. ++|+.+++.
T Consensus 240 P~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 240 PTLEKLVALMEASLT 254 (350)
T ss_dssp CCTTTCCSCCEEECS
T ss_pred CCchhCcChhhCcCC
Confidence 6543 556666554
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.5e-17 Score=193.15 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=104.4
Q ss_pred CceEEEecCCCCcc-----ccCccCCCCCCcEEeccCCCCCCcc----ccccCCC---------CCCCEEEccCcccccc
Q 047103 659 NVVELKLRHTPIEE-----VPSSIDCLPDLETLEMSNCYSLKSL----STNICKL---------KSLRSLHLAFCEQLGK 720 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~Ls~~~~l~~l----p~~l~~L---------~~L~~L~Ls~~~~~~~ 720 (1095)
+|++|+|++|.++. +|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|.+..
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~- 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN- 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-
Confidence 34455555555543 4445555566666666665543222 2222222 566666666655442
Q ss_pred ccccccccCccccCCCCCCEEEecCCCCCC-----CCCcccCCCccccccccCC--C-----cccCcccCCCCCCCeeeC
Q 047103 721 EASNIKELPSSIENLEGLRELQLMGCTKLG-----SLPESLGNLKALEFLSAAG--I-----IKIPRDIGCLSSLVELDL 788 (1095)
Q Consensus 721 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~-----~lp~~l~~L~~L~~L~l~~--~-----~~lp~~l~~l~~L~~L~L 788 (1095)
..+..+...+..+++|+.|+|++|.+.. ..|..+..+++|+.|++++ + ..+|..+..+++|+.|+|
T Consensus 174 --~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 174 --GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp --GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred --HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 1111222334455566666666665441 1232455556666665443 2 336677888899999999
Q ss_pred CCCCCcc-----cCccc--CCCCCCCEEeccCCCCccc---CCCC-C---CCccceeecccCc
Q 047103 789 SRNNFES-----LPSGI--SHLSRLKWLHLFDCIMLQS---SLPE-L---PPHLVMLDARNCK 837 (1095)
Q Consensus 789 s~n~l~~-----lp~~l--~~L~~L~~L~L~~c~~l~~---~lp~-l---~~sL~~L~l~~c~ 837 (1095)
++|.++. +|..+ ..+++|+.|+|++|..... .+|. + .++|+.|++++|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 9999984 46666 4499999999999976551 1333 2 3789999999997
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=4.5e-15 Score=166.48 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=149.5
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCCCCCCcceeecccCCCCccccCCCCCCc
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNEDKAPKLKYIDLNHSSNLTRIPEPSETP 590 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l~~l~~L~~L~Ls~n~~l~~~p~~~~l~ 590 (1095)
+..+++|+.|++++|.++.++ .+..+++|++|+|++|.+... +.+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~------------------------------~~~~l~~L~~L~L~~n~i~~~-~~~~~l~ 85 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE------------------------------GVQYLNNLIGLELKDNQITDL-APLKNLT 85 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT------------------------------TGGGCTTCCEEECCSSCCCCC-GGGTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch------------------------------hhhccCCCCEEEccCCcCCCC-hhHccCC
Confidence 456788888888887765332 124567888888888865544 4488899
Q ss_pred cccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCC
Q 047103 591 NLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPI 670 (1095)
Q Consensus 591 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i 670 (1095)
+|++|+|++|.... ++ .+..+++|++|+|++|.. ..+|. +..++ +|++|++++|.+
T Consensus 86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~--------------------~L~~L~l~~n~l 141 (308)
T 1h6u_A 86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLS--------------------NLQVLYLDLNQI 141 (308)
T ss_dssp SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCT--------------------TCCEEECCSSCC
T ss_pred CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCC-CCchh-hcCCC--------------------CCCEEECCCCcc
Confidence 99999999987544 44 688899999999998754 33332 33333 456888899998
Q ss_pred ccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCC
Q 047103 671 EEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLG 750 (1095)
Q Consensus 671 ~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 750 (1095)
+.++. +..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+.+
T Consensus 142 ~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--------~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 142 TNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD--------ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC--------CGG-GGGCTTCCEEECTTSCCCB
T ss_pred CcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc--------Chh-hcCCCCCCEEEccCCccCc
Confidence 88876 8889999999999987665 444 8899999999999987654 222 7788999999999988543
Q ss_pred CCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcc
Q 047103 751 SLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG 799 (1095)
Q Consensus 751 ~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 799 (1095)
.. .+..+++|+.|+|++|.++..|..
T Consensus 210 ~~-----------------------~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 210 VS-----------------------PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CG-----------------------GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred cc-----------------------cccCCCCCCEEEccCCeeecCCee
Confidence 22 256678999999999999887754
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=6.1e-17 Score=199.01 Aligned_cols=311 Identities=13% Similarity=0.036 Sum_probs=190.7
Q ss_pred ccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC---------CCCCcceeecccCCCCccc
Q 047103 512 KNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE---------DKAPKLKYIDLNHSSNLTR 582 (1095)
Q Consensus 512 ~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l---------~~l~~L~~L~Ls~n~~l~~ 582 (1095)
.++++|+.|++++|.++..... .+..-+..+ ..|+.|+++++.+..+ ..+++|+.|+|++|.....
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGK----WLHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSH----HHHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECccccccCcchh----HHHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 3677888888887765321100 000001122 2677777777776522 4567788888887755442
Q ss_pred cCCCCCCccccEeeccCCccC---ccccccccCCCCcceEeccCCCCCcccCCcccccccce-eeccCCcccCC--C---
Q 047103 583 IPEPSETPNLDRMNLWNCTGL---ALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECVNLSE--F--- 653 (1095)
Q Consensus 583 ~p~~~~l~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~~L~~--~--- 653 (1095)
...+..+++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|+ +.+++|. +.. +
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~ 313 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL 313 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH
Confidence 223567778888887754333 233456677778888888763 4455666666777777 7777776 331 1
Q ss_pred ccccCCceEEEecCCCCc--cccCccCCCCCCcEEeccC----------CCCCCc--cccccCCCCCCCEEEccCccccc
Q 047103 654 PRISGNVVELKLRHTPIE--EVPSSIDCLPDLETLEMSN----------CYSLKS--LSTNICKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 654 p~~~~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~----------~~~l~~--lp~~l~~L~~L~~L~Ls~~~~~~ 719 (1095)
.....+|+.|+++ +.+. .++.....+++|+.|+|++ |+..+. ++.....+++|++|+++.+.+.+
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 1344677888887 4443 2333345677888888884 544432 23334457888888886655544
Q ss_pred cccccccccCcccc-CCCCCCEEEecC---CCCCCC------CCcccCCCccccccccCC----Ccc-cCcc-cCCCCCC
Q 047103 720 KEASNIKELPSSIE-NLEGLRELQLMG---CTKLGS------LPESLGNLKALEFLSAAG----IIK-IPRD-IGCLSSL 783 (1095)
Q Consensus 720 ~~~~~i~~lp~~l~-~l~~L~~L~L~~---~~~~~~------lp~~l~~L~~L~~L~l~~----~~~-lp~~-l~~l~~L 783 (1095)
. .+..+. .+++|+.|++++ |+..+. ++..+.++++|+.|+++. +.. .+.. ...+++|
T Consensus 393 ~-------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 393 E-------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp H-------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred H-------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 2 112233 378899999973 233333 222356688888887743 111 1122 2347889
Q ss_pred CeeeCCCCCCc--ccCcccCCCCCCCEEeccCCCCcccCCCCC---CCccceeecccCc
Q 047103 784 VELDLSRNNFE--SLPSGISHLSRLKWLHLFDCIMLQSSLPEL---PPHLVMLDARNCK 837 (1095)
Q Consensus 784 ~~L~Ls~n~l~--~lp~~l~~L~~L~~L~L~~c~~l~~~lp~l---~~sL~~L~l~~c~ 837 (1095)
+.|+|++|.++ .++..+..+++|++|+|++|+.....++.+ .++|+.|++++|+
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 99999999987 466667889999999999998422213322 4789999999998
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.6e-14 Score=155.22 Aligned_cols=167 Identities=20% Similarity=0.243 Sum_probs=97.3
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCE
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRE 740 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~ 740 (1095)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+. .|..+.++++|+.
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~ 87 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-------SAGVFDDLTELGT 87 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCE
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-------CHhHhccCCcCCE
Confidence 455556666666655443 4566666666655555555555666666666666544431 1223455566666
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCC--CcccCcc-cCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCCC
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRD-IGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~~ 816 (1095)
|+|++|.+.+..+..+..+++|+.|++++ +..+|.. +..+++|+.|+|++|+++.+|. .+..+++|++|+|++|..
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 66666665555555555666666654433 3444443 4667777777777777777665 466777777777777754
Q ss_pred cccCCCCC---CCccceeecccCc
Q 047103 817 LQSSLPEL---PPHLVMLDARNCK 837 (1095)
Q Consensus 817 l~~~lp~l---~~sL~~L~l~~c~ 837 (1095)
... .+.. .++|+.|++++|+
T Consensus 168 ~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 QSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCC-CTTTTTTCTTCCEEECCSCC
T ss_pred Ccc-CHHHHhCCCCCCEEEeeCCc
Confidence 322 2221 2567777777776
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.2e-14 Score=154.58 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=111.6
Q ss_pred CcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|+.|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|+|++|......|..+..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------- 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-------
Confidence 3566777777766555553 77788888888888877776677778888888888887654433333333333
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASN 724 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~ 724 (1095)
+|++|+|++|.|+.+|.. +..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+.
T Consensus 108 -------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---- 170 (251)
T 3m19_A 108 -------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---- 170 (251)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----
T ss_pred -------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc----
Confidence 445778888888877765 57788888888888877665555688888888888888766542
Q ss_pred ccccCccccCCCCCCEEEecCCCCCCC
Q 047103 725 IKELPSSIENLEGLRELQLMGCTKLGS 751 (1095)
Q Consensus 725 i~~lp~~l~~l~~L~~L~L~~~~~~~~ 751 (1095)
.+..+..+++|+.|+|++|++...
T Consensus 171 ---~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 ---PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---CHHHHhCCCCCCEEEeeCCceeCC
Confidence 123567788888888888876544
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=7.8e-17 Score=185.32 Aligned_cols=214 Identities=15% Similarity=0.080 Sum_probs=106.4
Q ss_pred CcceeecccCCCCccccC-----CCCCCc-cccEeeccCCccCccccccccCC-----CCcceEeccCCCCCcccCCccc
Q 047103 567 PKLKYIDLNHSSNLTRIP-----EPSETP-NLDRMNLWNCTGLALIPSYIQNF-----NNLGNLSLEGCESLRCFPQNIH 635 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p-----~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~L~~c~~l~~lp~~i~ 635 (1095)
++|++|+|++|.+....+ .+..++ +|++|+|++|......+..+..+ ++|++|+|++|......+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346666666665333322 144555 66666666666555544444443 6666666666553322222111
Q ss_pred ccccceeeccCCcccCCCccccCCceEEEecCCCCccccCc-----cCC-CCCCcEEeccCCCCCC----ccccccCCCC
Q 047103 636 FVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEVPSS-----IDC-LPDLETLEMSNCYSLK----SLSTNICKLK 705 (1095)
Q Consensus 636 ~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-----i~~-l~~L~~L~Ls~~~~l~----~lp~~l~~L~ 705 (1095)
.. +.....+|++|+|++|.++..+.. +.. .++|++|+|++|.+.. .++..+..++
T Consensus 102 ~~---------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 102 KT---------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp HH---------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred HH---------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 10 000013455666666666644321 333 2467777777766553 3333344444
Q ss_pred -CCCEEEccCccccccccccccccCccccCC-CCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCC-CCC
Q 047103 706 -SLRSLHLAFCEQLGKEASNIKELPSSIENL-EGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGC-LSS 782 (1095)
Q Consensus 706 -~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l-~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~-l~~ 782 (1095)
+|++|+|++|.+.+..+. .+...+..+ ++|+.|+|++|.+...-. ..++..+.. .++
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-----------------~~l~~~l~~~~~~ 226 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCA---ELAKFLASIPASVTSLDLSANLLGLKSY-----------------AELAYIFSSIPNH 226 (362)
T ss_dssp TTCCEEECTTSCGGGSCHH---HHHHHHHTSCTTCCEEECTTSCGGGSCH-----------------HHHHHHHHHSCTT
T ss_pred ccccEeeecCCCCchhhHH---HHHHHHHhCCCCCCEEECCCCCCChhHH-----------------HHHHHHHhcCCCC
Confidence 677777777665542221 122233444 367777777766443211 112222222 236
Q ss_pred CCeeeCCCCCCcccC-----cccCCCCCCCEEeccCCC
Q 047103 783 LVELDLSRNNFESLP-----SGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 783 L~~L~Ls~n~l~~lp-----~~l~~L~~L~~L~L~~c~ 815 (1095)
|+.|+|++|.++..+ ..+..+++|+.|+|++|.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 666666666665433 233556666666666664
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1e-16 Score=196.92 Aligned_cols=302 Identities=12% Similarity=0.092 Sum_probs=200.5
Q ss_pred ccccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC----CCCCcceeecccCCCCccc---
Q 047103 510 AFKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE----DKAPKLKYIDLNHSSNLTR--- 582 (1095)
Q Consensus 510 ~f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l----~~l~~L~~L~Ls~n~~l~~--- 582 (1095)
.+..+++|+.|++++|.++.+... .++..+... ++|+.|++.++.+..+ ..+++|+.|++++......
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~----~l~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPK----DLETIARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHH----HHHHHHHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHhcCCCccEEEeeccCCCccCHH----HHHHHHhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 456788999999998887522210 011111122 3889999998876554 6678999999986433211
Q ss_pred -cCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcc-cCCcccccccce-eeccCCcccCCCc---cc
Q 047103 583 -IPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRC-FPQNIHFVSSIK-INCSECVNLSEFP---RI 656 (1095)
Q Consensus 583 -~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~-lp~~i~~l~~L~-l~l~~c~~L~~~p---~~ 656 (1095)
...+..+++|+.|+++++ ....+|..+..+++|++|+|++|..... ++..+..+++|+ +.+..+-.-..++ ..
T Consensus 262 ~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 123678889999999875 4566778888899999999999883322 223345677777 6665332222222 33
Q ss_pred cCCceEEEec-----------CCCCcc--ccCccCCCCCCcEEeccCCCCCCccccccCC-CCCCCEEEccCcc---ccc
Q 047103 657 SGNVVELKLR-----------HTPIEE--VPSSIDCLPDLETLEMSNCYSLKSLSTNICK-LKSLRSLHLAFCE---QLG 719 (1095)
Q Consensus 657 ~~~L~~L~L~-----------~n~i~~--lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~-L~~L~~L~Ls~~~---~~~ 719 (1095)
..+|++|+++ .+.++. ++.....+++|++|+++.+.+.+..+..+.. +++|++|++++|. ..+
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 5679999999 356652 3333456899999999777776666666655 8999999998532 222
Q ss_pred cccccccccCccccCCCCCCEEEecCCC--CCCCCCccc-CCCccccccccCCCc----ccCcccCCCCCCCeeeCCCCC
Q 047103 720 KEASNIKELPSSIENLEGLRELQLMGCT--KLGSLPESL-GNLKALEFLSAAGII----KIPRDIGCLSSLVELDLSRNN 792 (1095)
Q Consensus 720 ~~~~~i~~lp~~l~~l~~L~~L~L~~~~--~~~~lp~~l-~~L~~L~~L~l~~~~----~lp~~l~~l~~L~~L~Ls~n~ 792 (1095)
..|.. ..++..+.++++|+.|+++.|. +.+..+..+ ..+++|+.|+++... .++..+..+++|+.|+|++|.
T Consensus 421 ~~p~~-~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 421 DLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCCCH-HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CchHH-HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 11100 0123336678999999998765 333333333 347889998776532 245556889999999999999
Q ss_pred Cc--ccCcccCCCCCCCEEeccCCCCcc
Q 047103 793 FE--SLPSGISHLSRLKWLHLFDCIMLQ 818 (1095)
Q Consensus 793 l~--~lp~~l~~L~~L~~L~L~~c~~l~ 818 (1095)
++ .++..+..+++|++|+|++|+...
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 87 356566789999999999998433
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1.2e-16 Score=183.66 Aligned_cols=232 Identities=17% Similarity=0.105 Sum_probs=159.4
Q ss_pred eecccCCCCccccCCCC-CCccccEeeccCCccCcccc----ccccCCC-CcceEeccCCCCCcccCCcccccccceeec
Q 047103 571 YIDLNHSSNLTRIPEPS-ETPNLDRMNLWNCTGLALIP----SYIQNFN-NLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 571 ~L~Ls~n~~l~~~p~~~-~l~~L~~L~L~~~~~l~~lp----~~i~~L~-~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
+++|++|.+...+|.+. ..++|++|+|++|......+ ..+..++ +|++|+|++|......+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI------- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence 35677787777777754 44559999999998766555 6777888 89999999976544333333211
Q ss_pred cCCcccCCCccccCCceEEEecCCCCccccCc-----cCCC-CCCcEEeccCCCCCCccccc----cCC-CCCCCEEEcc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVPSS-----IDCL-PDLETLEMSNCYSLKSLSTN----ICK-LKSLRSLHLA 713 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-----i~~l-~~L~~L~Ls~~~~l~~lp~~----l~~-L~~L~~L~Ls 713 (1095)
+.....+|++|+|++|.++..+.. +..+ ++|++|+|++|.+....+.. +.. .++|++|+|+
T Consensus 75 --------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 75 --------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp --------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred --------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 001124677899999998855432 4455 89999999999876655443 334 3689999999
Q ss_pred CccccccccccccccCccccCCC-CCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCC-CCCCeeeCCCC
Q 047103 714 FCEQLGKEASNIKELPSSIENLE-GLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCL-SSLVELDLSRN 791 (1095)
Q Consensus 714 ~~~~~~~~~~~i~~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l-~~L~~L~Ls~n 791 (1095)
+|.+.+ .....++..+..++ +|+.|+|++|.+.+..+..+ ...+..+ ++|+.|+|++|
T Consensus 147 ~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 147 GNDLGI---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL-----------------AKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp TSCGGG---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH-----------------HHHHHTSCTTCCEEECTTS
T ss_pred CCcCCH---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH-----------------HHHHHhCCCCCCEEECCCC
Confidence 988765 23334555566665 89999999988654433211 1223444 59999999999
Q ss_pred CCcc-----cCcccCC-CCCCCEEeccCCCCcccCC------CCCCCccceeecccCc
Q 047103 792 NFES-----LPSGISH-LSRLKWLHLFDCIMLQSSL------PELPPHLVMLDARNCK 837 (1095)
Q Consensus 792 ~l~~-----lp~~l~~-L~~L~~L~L~~c~~l~~~l------p~l~~sL~~L~l~~c~ 837 (1095)
.++. ++..+.. .++|++|+|++|..-.... -.-.++|+.|++++|.
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 9986 6766666 4599999999997543211 1223689999999996
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=3.4e-14 Score=171.39 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=126.7
Q ss_pred cceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccC
Q 047103 568 KLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSE 646 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~ 646 (1095)
+|+.|+|++|.+.. +|. + .++|++|+|++|.+. .+| ..+++|++|+|++|... .+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~----------- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP----------- 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC-----------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh-----------
Confidence 67778887776544 554 3 367888888887655 566 45678888888876433 3444 32
Q ss_pred CcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccccccc
Q 047103 647 CVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIK 726 (1095)
Q Consensus 647 c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~ 726 (1095)
.+|+.|+|++|.|+.+|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.+.+
T Consensus 120 -----------~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~------- 174 (571)
T 3cvr_A 120 -----------ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF------- 174 (571)
T ss_dssp -----------TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------
T ss_pred -----------cCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-------
Confidence 156788888888888887 67888888888887655 665 57888888888876543
Q ss_pred ccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCC
Q 047103 727 ELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRL 806 (1095)
Q Consensus 727 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L 806 (1095)
+|. +. ++|+.|+|++|.+. .+|. +.. +| ....+.|+.|+|++|.|+.+|..+..+++|
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN--------------HHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC------------------------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh--------------hcccccceEEecCCCcceecCHHHhcCCCC
Confidence 444 33 78888888888755 4443 221 11 112234588889988888888888888888
Q ss_pred CEEeccCCCCccc
Q 047103 807 KWLHLFDCIMLQS 819 (1095)
Q Consensus 807 ~~L~L~~c~~l~~ 819 (1095)
+.|+|++|+....
T Consensus 233 ~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 233 CTIILEDNPLSSR 245 (571)
T ss_dssp EEEECCSSSCCHH
T ss_pred CEEEeeCCcCCCc
Confidence 9999888876443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.4e-14 Score=161.00 Aligned_cols=172 Identities=23% Similarity=0.263 Sum_probs=104.6
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEe
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKL 665 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L 665 (1095)
+..+++|++|++++|.... ++ .+..+++|++|+|++|.... ++. +..++ +|+.|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~--------------------~L~~L~l 97 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLK--------------------NLGWLFL 97 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCT--------------------TCCEEEC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCC--------------------CCCEEEC
Confidence 3455566666666654332 22 35556666666666543222 222 22222 2345555
Q ss_pred cCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecC
Q 047103 666 RHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMG 745 (1095)
Q Consensus 666 ~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~ 745 (1095)
++|.++.+|. +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++
T Consensus 98 ~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 98 DENKVKDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--------I-TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CSSCCCCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--------C-GGGGGCTTCSEEECCS
T ss_pred CCCcCCCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc--------c-hhhccCCCCCEEEccC
Confidence 5566555543 6666777777777765544 2 346667777777777765543 1 2456677777777777
Q ss_pred CCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCCc
Q 047103 746 CTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIML 817 (1095)
Q Consensus 746 ~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~l 817 (1095)
|.+.+ ++. +..+++|+.|+|++|.++.+|. +..+++|+.|++++|+..
T Consensus 166 N~l~~----------------------~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 166 NQISD----------------------IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SCCCC----------------------CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred Ccccc----------------------chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 66433 222 5567888888888888888874 788888888888888643
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.4e-14 Score=174.69 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=119.3
Q ss_pred ccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCCCCCC-CCCCcceeecccCCCCccccCCCCCCccccE
Q 047103 516 NLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYPLKNE-DKAPKLKYIDLNHSSNLTRIPEPSETPNLDR 594 (1095)
Q Consensus 516 ~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 594 (1095)
+|+.|++++|.++.+|.. + +..|++|++++|.+..+ ..+++|++|+|++|.+.. +|.+.. +|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~---------l---~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN---------L---PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPELPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSC---------C---CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCT--TCCE
T ss_pred CccEEEeCCCCCCccCHh---------H---cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cchhhc--CCCE
Confidence 888999998887655531 1 12455555555554443 233455555555554333 333322 5555
Q ss_pred eeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCcccc
Q 047103 595 MNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEVP 674 (1095)
Q Consensus 595 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp 674 (1095)
|+|++|...+ +|. .+++|++|+|++|. ++.+|..+.+|+.|+|++|.|+.+|
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~------------------------l~~lp~~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQ------------------------LTMLPELPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSC------------------------CSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCc------------------------cCcCCCcCCCcCEEECCCCCCCCcc
Confidence 5555554333 343 34555555555533 3334444457788999999999888
Q ss_pred CccCCCCCCcEEeccCCCCCCccccccCCCCCC-------CEEEccCccccccccccccccCccccCCCCCCEEEecCCC
Q 047103 675 SSIDCLPDLETLEMSNCYSLKSLSTNICKLKSL-------RSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCT 747 (1095)
Q Consensus 675 ~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L-------~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~ 747 (1095)
. +. ++|+.|+|++|.+. .+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|+|++|+
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--------~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT--------HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC--------CCCGGGGGSCTTEEEECCSSS
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce--------ecCHHHhcCCCCCEEEeeCCc
Confidence 8 65 89999999998765 6776 554 67 99999987544 577778889999999999999
Q ss_pred CCCCCCcccCCCc
Q 047103 748 KLGSLPESLGNLK 760 (1095)
Q Consensus 748 ~~~~lp~~l~~L~ 760 (1095)
+.+.+|..+..++
T Consensus 242 l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 242 LSSRIRESLSQQT 254 (571)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHhh
Confidence 8888777665544
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=5.2e-16 Score=188.20 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=26.8
Q ss_pred CcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCC
Q 047103 683 LETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 683 L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 748 (1095)
|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--------ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--------CCCGGGGGCTTCCEEECCSSCC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--------ccchhhhcCCCCCEEECCCCCC
Confidence 4555555543332 343 455555555555554322 3444455555555555555543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=3.1e-14 Score=173.67 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=63.0
Q ss_pred EEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEE
Q 047103 662 ELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLREL 741 (1095)
Q Consensus 662 ~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L 741 (1095)
.|+|++|.+..+| .+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.+.+ + ..+..+++|+.|
T Consensus 91 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--------l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 91 WLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--------I-TVLSRLTKLDTL 158 (605)
T ss_dssp EEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC--------C-GGGGSCTTCSEE
T ss_pred EEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC--------c-hhhcccCCCCEE
Confidence 4444555554444 35556666666666655443 2 235556666666666655443 1 235556666666
Q ss_pred EecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 742 QLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 742 ~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
+|++|.+.+..| +..+++|+.|+|++|.|+.+| .+..|++|+.|+|++|+.
T Consensus 159 ~Ls~N~l~~~~~-----------------------l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 159 SLEDNQISDIVP-----------------------LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCCGG-----------------------GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ECcCCcCCCchh-----------------------hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 666665443222 334455555555555555553 355555555555555543
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.7e-14 Score=147.30 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=99.0
Q ss_pred CcceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 567 PKLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
++|++|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|+|++|......+..+..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------- 100 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------- 100 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc-------
Confidence 4566777777755443333 56777777777777766554445567777777777777543322222223233
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASN 724 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~ 724 (1095)
+|++|++++|.++.+|.. +..+++|+.|+|++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 101 -------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 101 -------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred -------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 344667777777766654 5667777777777776655544456677777777777764432
Q ss_pred ccccCccccCCCCCCEEEecCCCCCCCCCcccCCCc
Q 047103 725 IKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLK 760 (1095)
Q Consensus 725 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~ 760 (1095)
.+++|+.|+++.|.+.+.+|..++.++
T Consensus 163 ---------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ---------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345666777777777777766555444
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=1.4e-16 Score=195.78 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=87.9
Q ss_pred cCCceEEEecCCCCcc--ccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCc--------cccccc-c---
Q 047103 657 SGNVVELKLRHTPIEE--VPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFC--------EQLGKE-A--- 722 (1095)
Q Consensus 657 ~~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~--------~~~~~~-~--- 722 (1095)
..+|++|+|++|.++. ++..+..+++|+.|++++|.....++.....+++|++|++++| ...+.. .
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 4678888888888663 3333567788888888877221223333335777777777432 111100 0
Q ss_pred ----cccccc-----------Cccc-cCCCCCCEEEec-----CCCCCCCCCc------ccCCCccccccccCCC-cc-c
Q 047103 723 ----SNIKEL-----------PSSI-ENLEGLRELQLM-----GCTKLGSLPE------SLGNLKALEFLSAAGI-IK-I 773 (1095)
Q Consensus 723 ----~~i~~l-----------p~~l-~~l~~L~~L~L~-----~~~~~~~lp~------~l~~L~~L~~L~l~~~-~~-l 773 (1095)
..++.+ +..+ ..+++|+.|+++ +|...+..|. .+.++++|+.|++++. .. .
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~ 447 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHH
Confidence 000000 0011 135566666666 2333322221 1344555666655441 00 1
Q ss_pred CcccC-CCCCCCeeeCCCCCCcc--cCcccCCCCCCCEEeccCCCCcccCCC---CCCCccceeecccCc
Q 047103 774 PRDIG-CLSSLVELDLSRNNFES--LPSGISHLSRLKWLHLFDCIMLQSSLP---ELPPHLVMLDARNCK 837 (1095)
Q Consensus 774 p~~l~-~l~~L~~L~Ls~n~l~~--lp~~l~~L~~L~~L~L~~c~~l~~~lp---~l~~sL~~L~l~~c~ 837 (1095)
+..+. .+++|+.|+|++|.++. ++.....+++|+.|+|++|+.....+. .-.++|+.|++++|+
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 11122 25666666666666642 221224466677777776665221111 112566667776665
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=144.38 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=103.1
Q ss_pred EEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc-cccCCCCCCE
Q 047103 662 ELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS-SIENLEGLRE 740 (1095)
Q Consensus 662 ~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~l~~l~~L~~ 740 (1095)
.++.+++.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+ +|. .+..+++|++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--------LPNGVFNKLTSLTY 80 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCE
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--------cChhhcCCCCCcCE
Confidence 4445555555555433 2355555555555444333444555555555555554332 221 2345555555
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCC--CcccCc-ccCCCCCCCeeeCCCCCCcccCcc-cCCCCCCCEEeccCCCC
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPR-DIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~L~L~~c~~ 816 (1095)
|+|++|.+.+..+..+.++++|+.|++++ +..+|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 55555555544444455555555554433 334444 367788999999999999988775 68899999999999964
Q ss_pred cccCCCCCCCccceeecccCccCcccCCCC
Q 047103 817 LQSSLPELPPHLVMLDARNCKRLQSLPELP 846 (1095)
Q Consensus 817 l~~~lp~l~~sL~~L~l~~c~~L~~lp~~~ 846 (1095)
.. -.++|+.|++..+..-+.+|...
T Consensus 161 ~~-----~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 161 DC-----TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CC-----CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ec-----CCCCHHHHHHHHHhCCceeeccC
Confidence 43 34578888888887777777543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=8.3e-14 Score=145.30 Aligned_cols=146 Identities=16% Similarity=0.251 Sum_probs=108.4
Q ss_pred CCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCC
Q 047103 658 GNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~ 737 (1095)
.+|+.|++++|.++.+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~ 113 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTS-------DKIPNLSGLTS 113 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBG-------GGSCCCTTCTT
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCc-------ccChhhcCCCC
Confidence 45778999999999888 688899999999998843 333 467889999999999887665 24555778889
Q ss_pred CCEEEecCCCCCCCCCcccCCCccccccccCC---CcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCC
Q 047103 738 LRELQLMGCTKLGSLPESLGNLKALEFLSAAG---IIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDC 814 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~---~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c 814 (1095)
|+.|++++|.+.+..|..+..+++|+.|++++ +..+| .+..+++|+.|+|++|.++.++ .+..+++|+.|++++|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 99999999888776777677777777765544 33444 4666777777777777777766 5667777777777776
Q ss_pred C
Q 047103 815 I 815 (1095)
Q Consensus 815 ~ 815 (1095)
+
T Consensus 192 ~ 192 (197)
T 4ezg_A 192 T 192 (197)
T ss_dssp -
T ss_pred c
Confidence 5
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=8.2e-16 Score=188.93 Aligned_cols=299 Identities=18% Similarity=0.203 Sum_probs=173.0
Q ss_pred cccCCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccCC--CC--CC----CCCCcceeecccCCCCccc
Q 047103 511 FKNMPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQYP--LK--NE----DKAPKLKYIDLNHSSNLTR 582 (1095)
Q Consensus 511 f~~m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~--l~--~l----~~l~~L~~L~Ls~n~~l~~ 582 (1095)
+.++++|+.|++++|.++..... .+..-.... .+|+.|+++++. +. .+ ..+++|++|+|++|.....
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~----~l~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGH----WLSHFPDTY-TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGG----GGGGSCTTC-CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred HHhCCCCCEEeCcCCccCCcchH----HHHHHhhcC-CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence 34677788888877765422110 011111122 367777777765 11 11 3457788888877744444
Q ss_pred cCC-CCCCccccEeeccCCcc------------------------------CccccccccCCCCcceEeccCCCCCcc-c
Q 047103 583 IPE-PSETPNLDRMNLWNCTG------------------------------LALIPSYIQNFNNLGNLSLEGCESLRC-F 630 (1095)
Q Consensus 583 ~p~-~~~l~~L~~L~L~~~~~------------------------------l~~lp~~i~~L~~L~~L~L~~c~~l~~-l 630 (1095)
+|. +..+++|++|++..|.. ...++..+..+++|++|+|++|..... +
T Consensus 227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence 443 45566666666544321 112333334567888888888772221 2
Q ss_pred CCcccccccce-eeccCCcccCCCc---cccCCceEEEecC---------CCCcc--ccCccCCCCCCcEEeccCCCCCC
Q 047103 631 PQNIHFVSSIK-INCSECVNLSEFP---RISGNVVELKLRH---------TPIEE--VPSSIDCLPDLETLEMSNCYSLK 695 (1095)
Q Consensus 631 p~~i~~l~~L~-l~l~~c~~L~~~p---~~~~~L~~L~L~~---------n~i~~--lp~~i~~l~~L~~L~Ls~~~~l~ 695 (1095)
+..+..+++|+ +.+.+|-.-..++ ....+|++|++.+ +.++. +......+++|+.|.+..+.+..
T Consensus 307 ~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 22234567777 7776662211122 2346788888733 34432 11112347888888776666555
Q ss_pred ccccccC-CCCCCCEEEcc-----CccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCC-CccccccccC
Q 047103 696 SLSTNIC-KLKSLRSLHLA-----FCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGN-LKALEFLSAA 768 (1095)
Q Consensus 696 ~lp~~l~-~L~~L~~L~Ls-----~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~-L~~L~~L~l~ 768 (1095)
..+..+. .+++|+.|+++ +|...+..|.. ..++..+..+++|+.|+|++ .+....+..+.. +++|+.|+++
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH-HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchh-hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc
Confidence 4444444 58999999999 33333211100 01222356789999999977 444443344444 7889999776
Q ss_pred CCcc----cCcccCCCCCCCeeeCCCCCCcc--cCcccCCCCCCCEEeccCCCC
Q 047103 769 GIIK----IPRDIGCLSSLVELDLSRNNFES--LPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 769 ~~~~----lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
+..- ++.....+++|+.|+|++|.++. ++..+..+++|+.|+|++|+.
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6432 11112568999999999999963 333456789999999999986
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3.4e-13 Score=144.20 Aligned_cols=146 Identities=23% Similarity=0.246 Sum_probs=101.1
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-ccccCCCCC
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP-SSIENLEGL 738 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp-~~l~~l~~L 738 (1095)
.+.++.+++.++.+|..+. ++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.. +| ..+..+++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--------i~~~~~~~l~~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--------LPVGVFDSLTQL 90 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--------cChhhcccCCCc
Confidence 3567888888888887654 888899999988888778888888999999998876533 33 345788889
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~ 815 (1095)
+.|+|++|.+.+..+..+..+++|+.|++++ +..+|..+..+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999988887665555555555555554332 44555555666666666666666665553 35556666666666664
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2e-13 Score=142.30 Aligned_cols=152 Identities=19% Similarity=0.265 Sum_probs=106.5
Q ss_pred CCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 565 KAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 565 ~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
.+++|+.|++++|.+. .+|.+..+++|++|++++|.. .. +..+..+++|++|++++|......|..+..+++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----- 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----- 113 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT-----
T ss_pred hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCC-----
Confidence 4567788888887544 566777888888888888733 33 346778888888888887665555555554443
Q ss_pred cCCcccCCCccccCCceEEEecCCCCcc-ccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEE-VPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
|+.|++++|.++. .|..+..+++|+.|++++|...+.+| .+..+++|++|++++|.+.+
T Consensus 114 ---------------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~---- 173 (197)
T 4ezg_A 114 ---------------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD---- 173 (197)
T ss_dssp ---------------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC----
T ss_pred ---------------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC----
Confidence 4477777777774 56667788888888888887566666 57788888888888876543
Q ss_pred cccccCccccCCCCCCEEEecCCCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKL 749 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~ 749 (1095)
++ .+..+++|+.|++++|++.
T Consensus 174 ----~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 ----YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----CT-TGGGCSSCCEEEECBC---
T ss_pred ----hH-HhccCCCCCEEEeeCcccC
Confidence 33 4677888888888887743
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=4.5e-13 Score=163.40 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=106.2
Q ss_pred CCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.... +| .+..+++|++|+|++|... .+|. +..+
T Consensus 62 ~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~-l~~l------ 130 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING-LVHL------ 130 (605)
T ss_dssp GGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG-GGGC------
T ss_pred ccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc-ccCC------
Confidence 345677777777775444 3337777777777777776543 33 5777777777777776433 2221 2222
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
.+|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+
T Consensus 131 --------------~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~---- 189 (605)
T 1m9s_A 131 --------------PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD---- 189 (605)
T ss_dssp --------------TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred --------------CccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC----
Confidence 2456778888888777 457788888888888887766555 7888888888888876654
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCCCCcccCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNL 759 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L 759 (1095)
+ ..+..+++|+.|+|++|.+.......+..+
T Consensus 190 ----l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 190 ----L-RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp ----C-GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred ----C-hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 2 246778888888888888765433333333
No 120
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=4.4e-13 Score=148.91 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
..+++|++|+|++|.+....+ +..+++|++|+|++|.... +| .+..+++|++|+|++|... .++ .+..+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~~-~l~~l------ 133 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHL------ 133 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGC------
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC-CCh-hhcCC------
Confidence 345677777787776544333 7778888888888876544 33 3778888888888876432 222 12222
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
.+|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+
T Consensus 134 --------------~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~---- 192 (291)
T 1h6t_A 134 --------------PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD---- 192 (291)
T ss_dssp --------------TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred --------------CCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC----
Confidence 2456788888888877 457788888888888887665444 7788888888888876543
Q ss_pred cccccCccccCCCCCCEEEecCCCCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLG 750 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~ 750 (1095)
+| .+..+++|+.|++++|++..
T Consensus 193 ----l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 ----LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ----Ch-hhccCCCCCEEECcCCcccC
Confidence 33 36778888888888887544
No 121
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=5.6e-13 Score=152.37 Aligned_cols=269 Identities=16% Similarity=0.101 Sum_probs=162.1
Q ss_pred cccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc-CCCCCHH
Q 047103 167 ISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS-GTGGGLE 245 (1095)
Q Consensus 167 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~-~~~~~l~ 245 (1095)
.+....+.++||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHH
Confidence 344566789999999999999 742 589999999999999999999987532 46664 33210 0001223
Q ss_pred HHHHHHHHHhcC-------------C-------C--cccc----CCCchHHHHhhhcC---CeEEEEecCCCChh-----
Q 047103 246 HLQKQILSTILS-------------E-------K--LEVA----GPNIPQFTKGRFRC---MKVLIVLDNVSKVG----- 291 (1095)
Q Consensus 246 ~l~~~ll~~l~~-------------~-------~--~~~~----~~~~~~~l~~~L~~---kr~LlVLDdv~~~~----- 291 (1095)
.+...+...+.. . . .... .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 333333222210 0 0 0000 01122223333332 48999999996532
Q ss_pred hHHHHhcCCCCCCCCCEEEEEeCchHHHHhc-----------Cc-ceEEEccCCChhHHHHHHHHhhhccCCCCcchHHH
Q 047103 292 QLEGLIGGLDQFGLGSRIIITTRDKRVLEKF-----------GV-KKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGH 359 (1095)
Q Consensus 292 ~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-----------~~-~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l 359 (1095)
++..++..+....++.++|+|+|........ +. ...+++.+|+.+|+.+++...+-.........
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--- 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--- 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH---
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH---
Confidence 2222221111112467899999987643211 11 35899999999999999987542112222222
Q ss_pred HHHHHHHhCCCCcceeeeccccccccc-c-----------c----ccC-------CCCHHHHHHhhhhhcccCCCCHHHH
Q 047103 360 SWRVVRYAKGNPLALKVMGSSLYQKSK-T-----------H----CFN-------DLTFEAKNIFLDIACFFEGEDKDFV 416 (1095)
Q Consensus 360 ~~~i~~~~~GlPLal~~lg~~L~~~~~-~-----------~----sy~-------~L~~~~k~~fl~~a~f~~~~~~~~v 416 (1095)
.+++..++|+|+++..++..+..... . . .+. .|++..+.++..+|+. . ....+
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l 308 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKC--G-KWSDV 308 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC--C-CHHHH
Confidence 68899999999999988765432110 0 0 111 5788999999999982 2 55555
Q ss_pred HHHhh---c--cC----CCccceeccCCceeEeCCEEEe-eHHHHHH
Q 047103 417 MRVLD---D--FV----SPELDVLIDKSLVTILDNRLQM-HDLLQEM 453 (1095)
Q Consensus 417 ~~~l~---~--~~----~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~ 453 (1095)
...+. + .. ...++.|.+.++|...++.|.+ |+++++.
T Consensus 309 ~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 309 KRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 43321 1 11 1128999999999887677774 6787764
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=9.2e-13 Score=139.92 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=71.6
Q ss_pred CceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc-ccCCC
Q 047103 659 NVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS-IENLE 736 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~-l~~l~ 736 (1095)
+++.|+|++|.|+.+|. .+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.. +|.. +.+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~f~~l~ 104 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--------LPKSLFEGLF 104 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--------CCTTTTTTCT
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--------cCHhHccCCC
Confidence 44555555555554443 34445555555555554444444445555555555555543322 2221 34445
Q ss_pred CCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCC
Q 047103 737 GLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 737 ~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~ 815 (1095)
+|+.|+|++|.+.+.. |..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 105 ~L~~L~L~~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLR---------------------VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCC---------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeC---------------------HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5555555554433322 3446667788888888888887765 46778888888888876
Q ss_pred C
Q 047103 816 M 816 (1095)
Q Consensus 816 ~ 816 (1095)
.
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 123
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.43 E-value=2.8e-13 Score=154.53 Aligned_cols=271 Identities=16% Similarity=0.117 Sum_probs=165.9
Q ss_pred cccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc--CCCCCH
Q 047103 167 ISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS--GTGGGL 244 (1095)
Q Consensus 167 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~--~~~~~l 244 (1095)
.++.....++||+.++++|.+.+..+ +++.|+|++|+|||||+++++++.. .+|+. ..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~ 74 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITR 74 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCH
Confidence 34456678999999999999988642 5899999999999999999998752 55664 32221 011234
Q ss_pred HHHHHHHHHHhcC----------------CCccccCCC---chHHHHhhhcC-CeEEEEecCCCChh--------h-HHH
Q 047103 245 EHLQKQILSTILS----------------EKLEVAGPN---IPQFTKGRFRC-MKVLIVLDNVSKVG--------Q-LEG 295 (1095)
Q Consensus 245 ~~l~~~ll~~l~~----------------~~~~~~~~~---~~~~l~~~L~~-kr~LlVLDdv~~~~--------~-l~~ 295 (1095)
..+.+.+...+.. ......... +.+.+.+.... ++++|||||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 4455555444332 000001111 12223333332 38999999997643 2 233
Q ss_pred HhcCCCCCCCCCEEEEEeCchHHHHhc-----------C-cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHH
Q 047103 296 LIGGLDQFGLGSRIIITTRDKRVLEKF-----------G-VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRV 363 (1095)
Q Consensus 296 l~~~~~~~~~gsrIIiTTR~~~v~~~~-----------~-~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i 363 (1095)
+...... .++.++|+|++...+...+ + ....+++.+|+.+|+.+++.... ...... --.+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~-~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD-VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC-CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC-CCHHHHHHH
Confidence 3221111 2467899999876543221 1 12479999999999999997643 221111 123567889
Q ss_pred HHHhCCCCcceeeeccccccc-cccc---------------ccCCC---CHHHHHHhhhhhcccCCCCHHHHHHHhhcc-
Q 047103 364 VRYAKGNPLALKVMGSSLYQK-SKTH---------------CFNDL---TFEAKNIFLDIACFFEGEDKDFVMRVLDDF- 423 (1095)
Q Consensus 364 ~~~~~GlPLal~~lg~~L~~~-~~~~---------------sy~~L---~~~~k~~fl~~a~f~~~~~~~~v~~~l~~~- 423 (1095)
+..++|+|+++..++..+... .... .+..+ ++..+.++..+|+ .......+...+...
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKG 309 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 999999999999887653221 1000 23334 6888999999998 223444554444211
Q ss_pred -C-C-----CccceeccCCceeEeCCEEEe-eHHHHHH
Q 047103 424 -V-S-----PELDVLIDKSLVTILDNRLQM-HDLLQEM 453 (1095)
Q Consensus 424 -~-~-----~~l~~L~~~sLi~~~~~~~~m-Hdll~~~ 453 (1095)
+ . ..++.|.+.++|...++.+.+ |+++++.
T Consensus 310 ~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 310 TKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATV 347 (350)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence 2 1 128999999999987778776 5666654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=9.8e-13 Score=139.69 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=90.6
Q ss_pred EEEecCCCCccccCccCCCCCCcEEeccCCCCCCccc-cccCCCCCCCEEEccCccccccccccccccCccccCCCCCCE
Q 047103 662 ELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLS-TNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRE 740 (1095)
Q Consensus 662 ~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~ 740 (1095)
.+++++|.++.+|..+. +.++.|+|++|.+.+..| ..+..+++|++|+|++|.+.+. .+..+.++++|+.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-------~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-------EEGAFEGASGVNE 85 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCE
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-------CHHHhCCCCCCCE
Confidence 56666666666665442 345666666665544433 2355666666666666554431 1224556666666
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCC--Cccc-CcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCC
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKI-PRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~ 816 (1095)
|+|++|.+.+..+..+.++++|+.|++++ +..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+.
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 66666666555555555555555554433 3333 45667778888888888888876 56778888888888888864
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=5.3e-13 Score=153.14 Aligned_cols=129 Identities=20% Similarity=0.172 Sum_probs=88.4
Q ss_pred CceEEEecCCCCccccCc-cC-CCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCC
Q 047103 659 NVVELKLRHTPIEEVPSS-ID-CLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLE 736 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~-i~-~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~ 736 (1095)
.++.|+|++|.|+.++.. +. .+++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+. .+..+.+++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-------DEFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-------CHHHhCCCc
Confidence 456788888888877665 44 788888888888877666666788888888888888765431 123467778
Q ss_pred CCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCccc----CCCCCCCEEecc
Q 047103 737 GLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGI----SHLSRLKWLHLF 812 (1095)
Q Consensus 737 ~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~L~~L~~L~L~ 812 (1095)
+|+.|+|++|.+....|. .+..+++|+.|+|++|.|+.+|..+ ..+++|+.|+|+
T Consensus 113 ~L~~L~L~~N~i~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRN---------------------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp TCCEEECCSSCCCEECTT---------------------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCEEECCCCcccEECHH---------------------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 888888888776554444 4455566667777777777666543 456677777777
Q ss_pred CCC
Q 047103 813 DCI 815 (1095)
Q Consensus 813 ~c~ 815 (1095)
+|+
T Consensus 172 ~N~ 174 (361)
T 2xot_A 172 SNK 174 (361)
T ss_dssp SSC
T ss_pred CCC
Confidence 664
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=6.8e-13 Score=145.05 Aligned_cols=119 Identities=26% Similarity=0.330 Sum_probs=73.5
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCE
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRE 740 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~ 740 (1095)
+.|+|++|.++.+|. +..+++|+.|+|++|.+.+ +|.. .. ++|++|++++|.+.+ ++ .+..+++|+.
T Consensus 66 ~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--------~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 66 KELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD--------TD-SLIHLKNLEI 132 (263)
T ss_dssp CEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB--------SG-GGTTCTTCCE
T ss_pred CEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC--------Ch-hhcCcccccE
Confidence 355555555555555 5666666666666665433 3322 22 666667766665443 11 3566667777
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcccCCCCCCCEEeccCCCC
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~L~~L~~L~L~~c~~ 816 (1095)
|++++|.+.+ ++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|+.
T Consensus 133 L~Ls~N~i~~----------------------~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 133 LSIRNNKLKS----------------------IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECTTSCCCB----------------------CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred EECCCCcCCC----------------------Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 7777665432 11 345567788888888888877 5677788888888888764
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=3.1e-12 Score=135.87 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=86.7
Q ss_pred ccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCC
Q 047103 590 PNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTP 669 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~ 669 (1095)
++|+.|+|++|.+....+..|..+++|++|+|++|......|..+..+++ |+.|+|++|.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------------------L~~L~Ls~N~ 91 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------------------LNSLVLYGNK 91 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------------------CCEEECCSSC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------------------CCEEECCCCc
Confidence 46666666666655544556666677777777665544444554444433 3366666677
Q ss_pred CccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCC
Q 047103 670 IEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 670 i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 748 (1095)
|+.+|.. +..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.+.. +..+..+++|+.|+|++|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------TTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------HHHHhCCCCCCEEEeCCCCc
Confidence 7766655 467777888888887777776777777888888888877655421 22466677788888887764
Q ss_pred C
Q 047103 749 L 749 (1095)
Q Consensus 749 ~ 749 (1095)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 3
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=3.4e-13 Score=147.40 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=114.6
Q ss_pred CCCCcceeecccCCCCccccCCCCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceee
Q 047103 564 DKAPKLKYIDLNHSSNLTRIPEPSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKIN 643 (1095)
Q Consensus 564 ~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~ 643 (1095)
..+++|++|++++|. +..+|.+..+++|++|+|++|..... +. +..+++|++|+|++|.. +.+|..
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l-~~l~~~---------- 103 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRL-KNLNGI---------- 103 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCC-SCCTTC----------
T ss_pred hhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCcc-CCcCcc----------
Confidence 356778888888884 44567788889999999988876554 33 88899999999998643 333321
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+. .+|+.|+|++|.++.+| .+..+++|+.|+|++|.+.+ ++ .+..+++|+.|++++|.+.+.
T Consensus 104 ----------~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 104 ----------PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp ----------CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC---
T ss_pred ----------cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch---
Confidence 11 46778999999999886 48899999999999987655 44 588899999999999877652
Q ss_pred cccccCccccCCCCCCEEEecCCCCCCC
Q 047103 724 NIKELPSSIENLEGLRELQLMGCTKLGS 751 (1095)
Q Consensus 724 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 751 (1095)
..+..+++|+.|++++|.+...
T Consensus 166 ------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 ------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------HHhccCCCCCEEeCCCCcccCC
Confidence 4577889999999999886654
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=1.5e-12 Score=152.23 Aligned_cols=265 Identities=14% Similarity=0.007 Sum_probs=158.5
Q ss_pred CCCCcccchhHHHHHHHhh-hcc-CC--CCcEEEEE--EecCCCcHHHHHHHHHHHHhcC-----CCc-eEEEEeccccc
Q 047103 171 SYNGLVGLNSRIEQIKPLL-CME-LS--DTVQIVGI--WGMGGIGKITLATAIFNQFSGG-----FEG-TCFVADVRRNS 238 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L-~~~-~~--~~~~vi~I--~GmgGiGKTTLA~~v~~~~~~~-----F~~-~~~v~~v~~~~ 238 (1095)
.+..++||+.+++++.+.+ ... .+ ...+.+.| +|++|+||||||++++++.... +.. .+|+. ...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AFN-- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GGG--
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CCC--
Confidence 3478999999999999988 431 11 12345555 9999999999999999987553 222 34543 211
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccc--cCCCchHHHHhhhc--CCeEEEEecCCCCh--------hhHHHHhcCCCCC---
Q 047103 239 GTGGGLEHLQKQILSTILSEKLEV--AGPNIPQFTKGRFR--CMKVLIVLDNVSKV--------GQLEGLIGGLDQF--- 303 (1095)
Q Consensus 239 ~~~~~l~~l~~~ll~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~l~~l~~~~~~~--- 303 (1095)
. .....+...++.+++...... ........+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 97 -~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 97 -A-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp -C-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred -C-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 1 466788888888875432111 11122334555554 67999999999764 3344333222111
Q ss_pred C--CCCEEEEEeCchHHHHhc---------CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhC----
Q 047103 304 G--LGSRIIITTRDKRVLEKF---------GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK---- 368 (1095)
Q Consensus 304 ~--~gsrIIiTTR~~~v~~~~---------~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~---- 368 (1095)
+ ....||+||+...+...+ .....+++++++.++++++|..++-.......--.+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 334588888866543211 1123499999999999999976542111111112456778899999
Q ss_pred --CCCcceeeecccc---c---cc-------------------ccccccCCCCHHHHHHhhhhhcccC----CCCHHHH-
Q 047103 369 --GNPLALKVMGSSL---Y---QK-------------------SKTHCFNDLTFEAKNIFLDIACFFE----GEDKDFV- 416 (1095)
Q Consensus 369 --GlPLal~~lg~~L---~---~~-------------------~~~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~v- 416 (1095)
|.|..+..++... . +. .....+..||..++.++..+|.+.. ......+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~ 334 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLR 334 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 9996544332211 0 00 0011567899999999999997642 1223222
Q ss_pred ---HHHh-hccC-C--------CccceeccCCceeEe
Q 047103 417 ---MRVL-DDFV-S--------PELDVLIDKSLVTIL 440 (1095)
Q Consensus 417 ---~~~l-~~~~-~--------~~l~~L~~~sLi~~~ 440 (1095)
..+. ...+ . ..++.|.+.+||...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 335 QRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 1222 2222 1 118889999999875
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=3.1e-12 Score=135.82 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=29.8
Q ss_pred ceeecccCCCCccccCC--CCCCccccEeeccCCccCccccccccCCCCcceEeccCCC
Q 047103 569 LKYIDLNHSSNLTRIPE--PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCE 625 (1095)
Q Consensus 569 L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 625 (1095)
+++|+|++|.+....|. +..+++|++|+|++|.+....+..|.++++|++|+|++|.
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 34555555544433332 4555566666666555444444455555555555555544
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=150.05 Aligned_cols=155 Identities=17% Similarity=0.056 Sum_probs=95.3
Q ss_pred cceeecccCCCCccccCC-CC-CCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 568 KLKYIDLNHSSNLTRIPE-PS-ETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
.|+.|+|++|.+....+. +. .+++|++|+|++|.+....+..|.++++|++|+|++|......+..+..++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------- 112 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------- 112 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc-------
Confidence 355666666655444443 44 677777777777766655556677777777777777654333233333333
Q ss_pred CCcccCCCccccCCceEEEecCCCCccc-cCccCCCCCCcEEeccCCCCCCcccccc---CCCCCCCEEEccCccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEV-PSSIDCLPDLETLEMSNCYSLKSLSTNI---CKLKSLRSLHLAFCEQLGKE 721 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l---~~L~~L~~L~Ls~~~~~~~~ 721 (1095)
+|+.|+|++|.|+.+ |..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.+.+..
T Consensus 113 -------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 113 -------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp -------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred -------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 344677777777766 4557778888888888876554333333 56788888888887655421
Q ss_pred cccccccCccccCCCC--CCEEEecCCCCC
Q 047103 722 ASNIKELPSSIENLEG--LRELQLMGCTKL 749 (1095)
Q Consensus 722 ~~~i~~lp~~l~~l~~--L~~L~L~~~~~~ 749 (1095)
+ ..+..++. |+.|+|++|++.
T Consensus 180 ~-------~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 L-------TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp H-------HHHHHSCHHHHTTEECCSSCEE
T ss_pred H-------HHhhhccHhhcceEEecCCCcc
Confidence 1 23444554 477888888754
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=4.7e-12 Score=135.31 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=27.1
Q ss_pred cceeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCC
Q 047103 568 KLKYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGC 624 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 624 (1095)
+|++|+|++|.+....|. +..+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 444555555544443332 445555555555555443322333445555555555554
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=2.4e-14 Score=173.56 Aligned_cols=185 Identities=22% Similarity=0.222 Sum_probs=131.0
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEe
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKL 665 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L 665 (1095)
+..+++|+.|+|++|.. ..+|..++++++|+.|++++|..+..+|..+ ..++..
T Consensus 345 ~~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll----------~~~~~~--------------- 398 (567)
T 1dce_A 345 SATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLM----------RALDPL--------------- 398 (567)
T ss_dssp CSTTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHCTG---------------
T ss_pred cccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHH----------Hhcccc---------------
Confidence 46678899999998764 5789999999999999987653222222100 000111
Q ss_pred cCCCCccccCccCCCCCCcEEe--------------ccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc
Q 047103 666 RHTPIEEVPSSIDCLPDLETLE--------------MSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS 731 (1095)
Q Consensus 666 ~~n~i~~lp~~i~~l~~L~~L~--------------Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~ 731 (1095)
..+|..++.+++|+.|+ +++|.+. .+|. ..|+.|+|++|.+. .+|.
T Consensus 399 -----~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~-~l~~-----~~L~~L~Ls~n~l~--------~lp~- 458 (567)
T 1dce_A 399 -----LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-KMEY-----ADVRVLHLAHKDLT--------VLCH- 458 (567)
T ss_dssp -----GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-HHHH-----TTCSEEECTTSCCS--------SCCC-
T ss_pred -----cCCHHHHHHHHhcccCcchhhcccchhhhhhhhccccc-ccCc-----cCceEEEecCCCCC--------CCcC-
Confidence 12223333333444443 3333221 2222 25999999998654 4565
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC--CcccCcccCCCCCCCeeeCCCCCCccc--CcccCCCCCCC
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG--IIKIPRDIGCLSSLVELDLSRNNFESL--PSGISHLSRLK 807 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~--~~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~L~~L~ 807 (1095)
++++++|+.|+|++|.+. .+|..++++++|+.|++++ +..+| .++.+++|+.|+|++|+|+.+ |..+..+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 889999999999999987 7888999999999997665 56787 889999999999999999987 88999999999
Q ss_pred EEeccCCCCcc
Q 047103 808 WLHLFDCIMLQ 818 (1095)
Q Consensus 808 ~L~L~~c~~l~ 818 (1095)
.|+|++|+...
T Consensus 537 ~L~L~~N~l~~ 547 (567)
T 1dce_A 537 LLNLQGNSLCQ 547 (567)
T ss_dssp EEECTTSGGGG
T ss_pred EEEecCCcCCC
Confidence 99999997543
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.2e-12 Score=128.52 Aligned_cols=130 Identities=25% Similarity=0.243 Sum_probs=93.6
Q ss_pred CCceEEEecCCCCc--cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCC
Q 047103 658 GNVVELKLRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENL 735 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l 735 (1095)
.+++.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+. +|..+.++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-------LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-------CCHHHHHC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-------HHHHHhhC
Confidence 45778888888887 7777777788888888888775544 5677778888888887765542 44455567
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc----ccCCCCCCCEEec
Q 047103 736 EGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS----GISHLSRLKWLHL 811 (1095)
Q Consensus 736 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~L~~L~~L~L 811 (1095)
++|+.|+|++|.+.+..+ +..+..+++|+.|+|++|.++.+|. .+..+++|++|++
T Consensus 95 ~~L~~L~Ls~N~l~~~~~--------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDIST--------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp TTCCEEECBSSSCCSSGG--------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred CCCCEEeccCCccCcchh--------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 777888777776433210 1346677888888888888888876 6788888888888
Q ss_pred cCCCC
Q 047103 812 FDCIM 816 (1095)
Q Consensus 812 ~~c~~ 816 (1095)
++|..
T Consensus 155 ~~n~~ 159 (168)
T 2ell_A 155 YDRED 159 (168)
T ss_dssp EETTS
T ss_pred CCCCh
Confidence 88854
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=8.3e-13 Score=165.13 Aligned_cols=125 Identities=19% Similarity=0.145 Sum_probs=85.9
Q ss_pred cccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCc
Q 047103 605 LIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLE 684 (1095)
Q Consensus 605 ~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~ 684 (1095)
..+..+..+++|+.|+|++|.. ..+|..+..+++ |+.|+|++|.|+.+|..|+.+++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~--------------------L~~L~Ls~N~l~~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDF--------------------LTRLYLNGNSLTELPAEIKNLSNLR 273 (727)
T ss_dssp -------CCCCCCEEECTTSCC-SCCCGGGGGCCS--------------------CSCCBCTTSCCSCCCGGGGGGTTCC
T ss_pred cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCC--------------------CCEEEeeCCcCcccChhhhCCCCCC
Confidence 4566777788888888887653 356655544433 4477777787887887788888888
Q ss_pred EEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCC
Q 047103 685 TLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNL 759 (1095)
Q Consensus 685 ~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L 759 (1095)
+|+|++|.+. .+|..+++|++|++|+|++|.+ ..+|..+++|++|+.|+|++|.+.+.+|..+..+
T Consensus 274 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 274 VLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp EEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred EEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC--------CccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 8888887765 6787788888888888887643 3567777888888888888888877777665443
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=4.9e-13 Score=167.20 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=88.0
Q ss_pred CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCceEEEe
Q 047103 586 PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVVELKL 665 (1095)
Q Consensus 586 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~~L~L 665 (1095)
+..+++|+.|+|++|... .+|..+..+++|++|+|++|... .+|..+..+++| +.|+|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------------~~L~L 277 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL--------------------RVLDL 277 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC--------------------CEEEC
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC--------------------CEEeC
Confidence 667777777777776654 56666667777777777775443 666666555444 36777
Q ss_pred cCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCC-CCCEEEec
Q 047103 666 RHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLE-GLRELQLM 744 (1095)
Q Consensus 666 ~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~-~L~~L~L~ 744 (1095)
++|.|+.+|..++.|++|++|+|++|.+ +.+|..|+.|++|++|+|++|.+.+..|.. +..+. .+..|+|+
T Consensus 278 s~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-------~~~~~~~~~~l~l~ 349 (727)
T 4b8c_D 278 SHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-------LTEKSVTGLIFYLR 349 (727)
T ss_dssp TTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHH-------HHHHHHHHHHHHHH
T ss_pred cCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHH-------HhhcchhhhHHhhc
Confidence 7777777777777777777777777654 466777777777777777777766644332 21111 11125566
Q ss_pred CCCCCCCCCc
Q 047103 745 GCTKLGSLPE 754 (1095)
Q Consensus 745 ~~~~~~~lp~ 754 (1095)
+|.+.+.+|.
T Consensus 350 ~N~l~~~~p~ 359 (727)
T 4b8c_D 350 DNRPEIPLPH 359 (727)
T ss_dssp HCCCCCCCCC
T ss_pred cCcccCcCcc
Confidence 6666666654
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=6.4e-12 Score=124.44 Aligned_cols=127 Identities=25% Similarity=0.249 Sum_probs=87.7
Q ss_pred CCceEEEecCCCCc--cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCC
Q 047103 658 GNVVELKLRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENL 735 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l 735 (1095)
.+++.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+. +|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-------LEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-------THHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-------HHHHhhhC
Confidence 45677888888777 7777777778888888887765544 5567777777777777765542 34445567
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc----ccCCCCCCCEEec
Q 047103 736 EGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS----GISHLSRLKWLHL 811 (1095)
Q Consensus 736 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~L~~L~~L~L 811 (1095)
++|+.|++++|.+.+.. .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++
T Consensus 88 ~~L~~L~ls~N~i~~~~--------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLS--------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSCCCSHH--------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCcCCChH--------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77777777776643310 11345667788888888888887775 5677888888877
Q ss_pred cC
Q 047103 812 FD 813 (1095)
Q Consensus 812 ~~ 813 (1095)
++
T Consensus 148 ~d 149 (149)
T 2je0_A 148 YD 149 (149)
T ss_dssp BC
T ss_pred CC
Confidence 63
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=5.9e-11 Score=137.19 Aligned_cols=256 Identities=14% Similarity=0.115 Sum_probs=157.1
Q ss_pred CCcccchhHHHHHHHhhhcc-CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC------C--CceEEEEecccccCCCC-
Q 047103 173 NGLVGLNSRIEQIKPLLCME-LSDTVQIVGIWGMGGIGKITLATAIFNQFSGG------F--EGTCFVADVRRNSGTGG- 242 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~------F--~~~~~v~~v~~~~~~~~- 242 (1095)
+.++||+.+++++...+... .....+.+.|+|++|+||||||+++++.+... + ...+|+. .... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREV----GG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHH----CS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccC----CC
Confidence 78999999999999888652 11445689999999999999999999987443 2 2334443 2221 2
Q ss_pred CHHHHHHHHHHHhcCCCccccC---CCchHHHHhhhcCCeEEEEecCCCChhh-------HHHHhcCCCCCCCCCEEEEE
Q 047103 243 GLEHLQKQILSTILSEKLEVAG---PNIPQFTKGRFRCMKVLIVLDNVSKVGQ-------LEGLIGGLDQFGLGSRIIIT 312 (1095)
Q Consensus 243 ~l~~l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~~~gsrIIiT 312 (1095)
....+...++.++.+......+ ......+.+.+..++.+|||||++.... +..+.... .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 5567777777776332222211 2234456666776666999999976432 33343322 67889999
Q ss_pred eCchHHH----Hhc--CcceEEEccCCChhHHHHHHHHhhh---ccCCCCcchHHHHHHHHHHhC---CCCc-ceeeecc
Q 047103 313 TRDKRVL----EKF--GVKKIYRVNGLQFDVALEQFCNYAF---KENRCPKDLIGHSWRVVRYAK---GNPL-ALKVMGS 379 (1095)
Q Consensus 313 TR~~~v~----~~~--~~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~---GlPL-al~~lg~ 379 (1095)
|+..... ... .....+++++++.++..+++..++- .....+ .+..+.++++++ |.|. |+.++-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9875321 111 1224899999999999999998753 222222 244556777777 8776 3332211
Q ss_pred c--cccc-c-ccc-----------------ccCCCCHHHHHHhhhhhcccC-CCCHHHHHHHhhccC-CCc--------c
Q 047103 380 S--LYQK-S-KTH-----------------CFNDLTFEAKNIFLDIACFFE-GEDKDFVMRVLDDFV-SPE--------L 428 (1095)
Q Consensus 380 ~--L~~~-~-~~~-----------------sy~~L~~~~k~~fl~~a~f~~-~~~~~~v~~~l~~~~-~~~--------l 428 (1095)
. +... . ... ++++|+..++..+..++.... +...+....+.+..| .+. +
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 327 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDII 327 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 1 1111 1 000 568899999988888887212 111123334444333 111 7
Q ss_pred ceeccCCceeEe
Q 047103 429 DVLIDKSLVTIL 440 (1095)
Q Consensus 429 ~~L~~~sLi~~~ 440 (1095)
..|.++++|+..
T Consensus 328 ~~L~~~gli~~~ 339 (384)
T 2qby_B 328 SELDMFGIVKIR 339 (384)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 888899998764
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=6.7e-11 Score=122.59 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=96.8
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCcccc-ccCCCCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLST-NICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
+.|+++++.++.+|..+.. +|+.|++++|.+.+..+. .+..+++|++|+|++|.+.+. .|..+.++++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-------EPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------CTTTTTTCTTCC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-------CHhHcCCcccCC
Confidence 5788999999999886643 889999999876655554 378888888888888876652 355677888888
Q ss_pred EEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCccc-CcccCCCCCCCEEeccCCCC
Q 047103 740 ELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESL-PSGISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~L~~L~~L~L~~c~~ 816 (1095)
.|+|++|.+.+..|. .+..+++|+.|+|++|+++.+ |..+..+++|++|+|++|+.
T Consensus 82 ~L~Ls~N~l~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 82 ELQLGENKIKEISNK---------------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EEECCSCCCCEECSS---------------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EEECCCCcCCccCHH---------------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 888888876544332 356677888999999998865 66788888999999988864
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=2.3e-11 Score=123.06 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=59.9
Q ss_pred CcceeecccCCCCc-cccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeec
Q 047103 567 PKLKYIDLNHSSNL-TRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINC 644 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l-~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l 644 (1095)
++|+.|+|++|.+. ..+|. +..+++|++|+|++|..... ..+..+++|++|+|++|.....+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------ 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------
Confidence 45556666665543 23443 35566666666666553332 4555566666666665543333333222222
Q ss_pred cCCcccCCCccccCCceEEEecCCCCcccc--CccCCCCCCcEEeccCCCCCCccc---cccCCCCCCCEEEccCc
Q 047103 645 SECVNLSEFPRISGNVVELKLRHTPIEEVP--SSIDCLPDLETLEMSNCYSLKSLS---TNICKLKSLRSLHLAFC 715 (1095)
Q Consensus 645 ~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~Ls~~~~l~~lp---~~l~~L~~L~~L~Ls~~ 715 (1095)
+|+.|+|++|.++.+| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 96 --------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 --------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp --------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred --------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 2234444555554443 344445555555555544333222 23444444444444444
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=120.44 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=95.9
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCE
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRE 740 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~ 740 (1095)
+.++++++.++.+|..+. ++|+.|+|++|.+. .+|..+.++++|++|+|++|.+.+. .+..+.++++|+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-------~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-------SNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC-------CTTTTTTCTTCCE
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe-------CHhHccCCCCCCE
Confidence 467888888888887653 68888888887654 6777788888888888888766542 2345778888888
Q ss_pred EEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCCC
Q 047103 741 LQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 741 L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~~ 816 (1095)
|+|++|.+.+..| ..+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|+.
T Consensus 83 L~Ls~N~l~~i~~---------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYNRLRCIPP---------------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCT---------------------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCccCEeCH---------------------HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8888887654433 345667888999999999998887 477889999999998864
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=2e-11 Score=120.83 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=40.9
Q ss_pred EEEecCCCCcc-ccCccCCCCCCcEEeccCCCCCCc-cccccCCCCCCCEEEccCccccccccccccccCc----cccCC
Q 047103 662 ELKLRHTPIEE-VPSSIDCLPDLETLEMSNCYSLKS-LSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS----SIENL 735 (1095)
Q Consensus 662 ~L~L~~n~i~~-lp~~i~~l~~L~~L~Ls~~~~l~~-lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~----~l~~l 735 (1095)
.|++++|.++. +|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ +|. .+..+
T Consensus 68 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~~~l 139 (149)
T 2je0_A 68 KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN--------LNDYRENVFKLL 139 (149)
T ss_dssp EEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG--------STTHHHHHHHHC
T ss_pred EEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc--------hHHHHHHHHHHC
Confidence 44445555554 444445566666666666654442 23556666666666666665433 222 35566
Q ss_pred CCCCEEEec
Q 047103 736 EGLRELQLM 744 (1095)
Q Consensus 736 ~~L~~L~L~ 744 (1095)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 666666654
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=6.5e-11 Score=120.82 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=75.7
Q ss_pred CceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCcc-ccCCCC
Q 047103 659 NVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSS-IENLEG 737 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~-l~~l~~ 737 (1095)
+|+.|++++|.++.+|......++|+.|++++|.+.+. ..+..+++|++|++++|.+.+ +|.. +..+++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~ 89 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--------IGEGLDQALPD 89 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--------ECSCHHHHCTT
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc--------cCcchhhcCCC
Confidence 45677777777776654333334777777777665443 456666777777777665432 3322 256666
Q ss_pred CCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcc----cCCCCCCCEEeccC
Q 047103 738 LRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG----ISHLSRLKWLHLFD 813 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~L~~L~~L~L~~ 813 (1095)
|+.|+|++|.+. .+|. ...+..+++|+.|+|++|.++.+|.. +..+++|+.|++++
T Consensus 90 L~~L~L~~N~i~-~~~~-------------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGD-------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCEEECCSCCCC-CGGG-------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCEEECCCCcCC-cchh-------------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 666666666532 1111 01345566777777777777766664 66677777777766
Q ss_pred CC
Q 047103 814 CI 815 (1095)
Q Consensus 814 c~ 815 (1095)
|.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=2.6e-10 Score=118.12 Aligned_cols=126 Identities=20% Similarity=0.154 Sum_probs=57.1
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccc-cccCCCCcceEeccCCCCCcccCCcccccccceeeccCC
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPS-YIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSEC 647 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c 647 (1095)
+.++++++.+ +.+|. +. .+|++|+|++|.+....+. .+..+++|++|+|++|......|..+..+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------- 79 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------- 79 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc--------
Confidence 3455555533 33332 21 2566666666554333332 2555566666666554433333333332222
Q ss_pred cccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 648 VNLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 648 ~~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
|++|+|++|.|+.++.. +..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.
T Consensus 80 ------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 80 ------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 22444444444443332 444445555555554444444444444444444444444433
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=5e-10 Score=114.22 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=96.4
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-ccccCCCCC
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP-SSIENLEGL 738 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp-~~l~~l~~L 738 (1095)
.+.++++++.++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ +| ..+..+++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--------LPDGVFDKLTKL 78 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTC
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--------eChhHccCCCcc
Confidence 357888899999988655 3789999999988776666667888999999999876553 33 335778888
Q ss_pred CEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcccCcc-cCCCCCCCEEeccCCCC
Q 047103 739 RELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFESLPSG-ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 739 ~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~L~L~~c~~ 816 (1095)
+.|+|++|.+.+..+ ..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 79 ~~L~l~~N~l~~~~~---------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 79 TILYLHENKLQSLPN---------------------GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCCccccCH---------------------HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 888888887554332 2346678889999999999988875 47788899999988864
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=2.7e-10 Score=131.52 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=139.6
Q ss_pred CCCCcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-----C-ceEEEEecccccCCCCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-----E-GTCFVADVRRNSGTGGG 243 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-----~-~~~~v~~v~~~~~~~~~ 243 (1095)
.++.++||+.+++++..++.... ....+.+.|+|++|+||||||+++++.....+ . ..+|+. . ....+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~----~~~~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A----RHRET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T----TTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C----CcCCC
Confidence 34789999999999999885431 14456889999999999999999999874432 2 233332 2 11145
Q ss_pred HHHHHHHHHHHhcCCCccccCC---CchHHHHhhh--cCCeEEEEecCCCChhh-------HHHHhcCCCCC--CCCCEE
Q 047103 244 LEHLQKQILSTILSEKLEVAGP---NIPQFTKGRF--RCMKVLIVLDNVSKVGQ-------LEGLIGGLDQF--GLGSRI 309 (1095)
Q Consensus 244 l~~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L--~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gsrI 309 (1095)
...+...++.+++.... ..+. ...+.+.+.+ .+++.+|||||++.... +..+....... ..+..+
T Consensus 92 ~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 66777888887754321 1111 1223344454 34689999999986532 23333222111 345678
Q ss_pred EEEeCchHH--------HHhcCcceEEEccCCChhHHHHHHHHhhh---ccCCCCcchHHHHHHHHHHhC---CCCc-ce
Q 047103 310 IITTRDKRV--------LEKFGVKKIYRVNGLQFDVALEQFCNYAF---KENRCPKDLIGHSWRVVRYAK---GNPL-AL 374 (1095)
Q Consensus 310 IiTTR~~~v--------~~~~~~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~---GlPL-al 374 (1095)
|.||+.... ...++ ...+.+++++.++..+++...+- ...... .+..+.++++++ |.|. |+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHH
Confidence 888876632 22222 14789999999999999988753 222222 234556777777 9983 32
Q ss_pred eeecccc--c---cccccc------------------ccCCCCHHHHHHhhhhhcccCC
Q 047103 375 KVMGSSL--Y---QKSKTH------------------CFNDLTFEAKNIFLDIACFFEG 410 (1095)
Q Consensus 375 ~~lg~~L--~---~~~~~~------------------sy~~L~~~~k~~fl~~a~f~~~ 410 (1095)
.++.... . +..... ++.+|+..++..++.++....+
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDG 305 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 2222111 1 111100 5678999999888888855444
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=2.1e-10 Score=132.41 Aligned_cols=233 Identities=14% Similarity=0.085 Sum_probs=139.0
Q ss_pred CCCCCcccchhHHHHHHHhhhcc-CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC---ceEEEEecccccCCCCCHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCME-LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE---GTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~---~~~~v~~v~~~~~~~~~l~ 245 (1095)
..++.++||+.+++++.+++... .....+.+.|+|++|+||||||+++++.+...+. ..+|+. .... ....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~----~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI----DTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH----CSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC----CCHH
Confidence 34478999999999999988752 1144668899999999999999999998766542 334443 2211 3445
Q ss_pred HHHHHHHHHhcCCCccccCC---CchHHHHhhhc--CCeEEEEecCCCChh------hHHHHhcCCCC-CCCCCEEEEEe
Q 047103 246 HLQKQILSTILSEKLEVAGP---NIPQFTKGRFR--CMKVLIVLDNVSKVG------QLEGLIGGLDQ-FGLGSRIIITT 313 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~-~~~gsrIIiTT 313 (1095)
.+...++..++..... .+. ...+.+.+.+. +++.+||||+++... .+..+...... ...+..+|+||
T Consensus 92 ~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 92 RVLADLLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 5666666655432111 111 11233444444 348999999996532 34444332211 13455678888
Q ss_pred CchHHHHhcC-------cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhC---CCCcceeee-cccc-
Q 047103 314 RDKRVLEKFG-------VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAK---GNPLALKVM-GSSL- 381 (1095)
Q Consensus 314 R~~~v~~~~~-------~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~---GlPLal~~l-g~~L- 381 (1095)
+.......+. ....+++++++.++..+++...+-.......-..+..+.++++++ |.|..+..+ ....
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8764332211 125899999999999999988653211111122445566777777 998743322 2111
Q ss_pred -c---ccccc------------------cccCCCCHHHHHHhhhhhccc
Q 047103 382 -Y---QKSKT------------------HCFNDLTFEAKNIFLDIACFF 408 (1095)
Q Consensus 382 -~---~~~~~------------------~sy~~L~~~~k~~fl~~a~f~ 408 (1095)
. +.... ..+.+++..++.++..++...
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~ 299 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSIS 299 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 11000 056678888888888888643
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.07 E-value=1e-09 Score=117.55 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=118.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+....+++|++..++.+...+.... ..+.+.|+|++|+||||||+++++.+...+.....- . ..... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~------~---~~~~~-~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP------C---GVCDN-C 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC--CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC------C---SCSHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC------C---cccHH-H
Confidence 3345679999999999999987643 234788999999999999999999875433111000 0 00000 0
Q ss_pred HHHHHHhcCCCccccCC--Cc---hHHHHhh-----hcCCeEEEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEEeCch
Q 047103 249 KQILSTILSEKLEVAGP--NI---PQFTKGR-----FRCMKVLIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIITTRDK 316 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~--~~---~~~l~~~-----L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 316 (1095)
..+.............. .. ...+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 01110000000000000 00 0011111 134679999999965 445666665554445678899998765
Q ss_pred HHH-Hh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeec
Q 047103 317 RVL-EK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMG 378 (1095)
Q Consensus 317 ~v~-~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 378 (1095)
... .. ......+++++++.+|..+++...+...... --.+....++++++|.|..+..+.
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 422 11 1223689999999999999998887543321 123556789999999998876554
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=2.1e-10 Score=116.95 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCcceeecccCCCCccccCCCCCCc-cccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcc-cccccceee
Q 047103 566 APKLKYIDLNHSSNLTRIPEPSETP-NLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNI-HFVSSIKIN 643 (1095)
Q Consensus 566 l~~L~~L~Ls~n~~l~~~p~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i-~~l~~L~l~ 643 (1095)
+.+|+.|+|++|.+. .+|.+..+. +|++|+|++|..... ..+..+++|++|+|++|.. ..+|..+ ..++
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~----- 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALP----- 88 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC-CEECSCHHHHCT-----
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc-cccCcchhhcCC-----
Confidence 455666666666433 345544443 666666666654432 4555666666666665432 2333222 2222
Q ss_pred ccCCcccCCCccccCCceEEEecCCCCccccC--ccCCCCCCcEEeccCCCCCCccccc----cCCCCCCCEEEccCcc
Q 047103 644 CSECVNLSEFPRISGNVVELKLRHTPIEEVPS--SIDCLPDLETLEMSNCYSLKSLSTN----ICKLKSLRSLHLAFCE 716 (1095)
Q Consensus 644 l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~Ls~~~~l~~lp~~----l~~L~~L~~L~Ls~~~ 716 (1095)
+|+.|+|++|.|+.+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.
T Consensus 89 ---------------~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 ---------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ---------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ---------------CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 23355555555555554 4555555555555555443 23332 4455555555555543
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=1.8e-09 Score=124.74 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=168.4
Q ss_pred CCCcccchhHHHHHHHhhhcc---CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-CceEEEEecccccCCCCCHHHH
Q 047103 172 YNGLVGLNSRIEQIKPLLCME---LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-EGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
++.++||+..++++...+... .....+.+.|+|++|+||||||+++++...... -..+++. . ........+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~----~~~~~~~~~ 90 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G----FIYRNFTAI 90 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T----TTCCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C----ccCCCHHHH
Confidence 478999999999999988652 112334889999999999999999999876542 2334443 1 111445677
Q ss_pred HHHHHHHhcCCCccc--cCCCchHHHHhhhc--CCeEEEEecCCCCh--hhHHHHhcCCCCCC----CCCEEEEEeCchH
Q 047103 248 QKQILSTILSEKLEV--AGPNIPQFTKGRFR--CMKVLIVLDNVSKV--GQLEGLIGGLDQFG----LGSRIIITTRDKR 317 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~l~~l~~~~~~~~----~gsrIIiTTR~~~ 317 (1095)
...++..++...... ......+.+.+.+. +++.+||||+++.. ..+..|...+.... .+..||+||++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 777777765421111 11112223333333 56889999999764 34555544332211 3667888888765
Q ss_pred HHHhcC-------cceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHh---------CCCCcceeeecccc
Q 047103 318 VLEKFG-------VKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYA---------KGNPLALKVMGSSL 381 (1095)
Q Consensus 318 v~~~~~-------~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~---------~GlPLal~~lg~~L 381 (1095)
+...+. ....+++++++.++..+++...+-.......--.+....+++++ .|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 433221 11379999999999999998875321111112245667888888 78875433332211
Q ss_pred ---c---cccccc------------------ccCCCCHHHHHHhhhhhccc---CC--CCHHHH----HHHhhccC-CC-
Q 047103 382 ---Y---QKSKTH------------------CFNDLTFEAKNIFLDIACFF---EG--EDKDFV----MRVLDDFV-SP- 426 (1095)
Q Consensus 382 ---~---~~~~~~------------------sy~~L~~~~k~~fl~~a~f~---~~--~~~~~v----~~~l~~~~-~~- 426 (1095)
. +..... .+..|+..++.++..++.+. .+ .....+ ..+....+ .+
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR 330 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 1 111100 46678889998888888664 22 222222 22222222 11
Q ss_pred -------ccceeccCCceeEe-C-------CEE-------EeeHHHHHHHHHHHhhc
Q 047103 427 -------ELDVLIDKSLVTIL-D-------NRL-------QMHDLLQEMGREIVRKE 461 (1095)
Q Consensus 427 -------~l~~L~~~sLi~~~-~-------~~~-------~mHdll~~~~~~i~~~e 461 (1095)
.+..|.++++|... . +++ ..|++++.+...+..+|
T Consensus 331 ~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 331 VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 18899999999874 2 222 24566666666665543
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.2e-09 Score=113.29 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=92.0
Q ss_pred CCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCC
Q 047103 658 GNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEG 737 (1095)
Q Consensus 658 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~ 737 (1095)
.++++|+|++|.|+.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+. .|..+..+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i-------~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI-------PPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe-------CHHHhCCCCC
Confidence 467899999999999999999999999999999998888888899999999999999877653 2345889999
Q ss_pred CCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc
Q 047103 738 LRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 738 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
|+.|+|++|.+....+. .+..+++|+.|+|++|.+.
T Consensus 104 L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEG---------------------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTT---------------------TTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCeeChh---------------------hhhcCccccEEEeCCCCee
Confidence 99999999986543322 3556788899999999876
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.4e-09 Score=122.88 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=126.3
Q ss_pred CCccceeeecCCcccccccCCcceecCCCCCCCCCCcceEEcccC--CCCCCCC--------CCcceeecccCCCCcccc
Q 047103 514 MPNLRLLKFYVPKFTFIPIASSKVHLDQGLDYLPKELRYLHWHQY--PLKNEDK--------APKLKYIDLNHSSNLTRI 583 (1095)
Q Consensus 514 m~~Lr~L~l~~n~l~~i~~~~~~~~~~~~l~~l~~~Lr~L~l~~~--~l~~l~~--------l~~L~~L~Ls~n~~l~~~ 583 (1095)
+++|+.|+|++|.+...... ...++. ++.+.+..+ +-..+.. +++|+.|+|.+ .++.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~---------~~~~~~-~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I 115 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK---------AGTYPN-GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNI 115 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES---------SSSSGG-GCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEE
T ss_pred hccCeEEecCcceeEEecCc---------cccccc-cccccccccccCHHHhcccccccccccCCCcEEECCc--cccch
Confidence 77899999999987621111 011121 233333332 2334556 88999999988 34445
Q ss_pred CC--CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCC---Cccc-CCcccccccce--eeccCCcccCCC--
Q 047103 584 PE--PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCES---LRCF-PQNIHFVSSIK--INCSECVNLSEF-- 653 (1095)
Q Consensus 584 p~--~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~---l~~l-p~~i~~l~~L~--l~l~~c~~L~~~-- 653 (1095)
++ |.++++|+.|+|.+|......+..|.++.+|..+.+..... ...+ +..+..+..|+ +.+.....+...
T Consensus 116 ~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 116 EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHh
Confidence 53 88999999999998877766667787777777776654110 0111 11122233333 111111111000
Q ss_pred --ccccCCceEEEecCCCCccccCcc-CCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-
Q 047103 654 --PRISGNVVELKLRHTPIEEVPSSI-DCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP- 729 (1095)
Q Consensus 654 --p~~~~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp- 729 (1095)
.....++..+.+.++-...-...+ ..+++|+.|+|++|.....-+..|.++++|+.|+|..| +..++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---------i~~I~~ 266 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---------LKTIGQ 266 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---------CCEECT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---------cceehH
Confidence 001122233333332111000001 12456666666655443333344556666666666543 11222
Q ss_pred ccccCCCCCC-EEEecCCCCCCCCCcccCCCcccccccc--CCCcccCc-ccCCCCCCCeee
Q 047103 730 SSIENLEGLR-ELQLMGCTKLGSLPESLGNLKALEFLSA--AGIIKIPR-DIGCLSSLVELD 787 (1095)
Q Consensus 730 ~~l~~l~~L~-~L~L~~~~~~~~lp~~l~~L~~L~~L~l--~~~~~lp~-~l~~l~~L~~L~ 787 (1095)
..|.++++|+ .|++.+ .+...-+.+|.++++|+.|++ +.+..++. .|.++++|+.|+
T Consensus 267 ~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 2355566666 666655 444444455666666666654 23445544 466677777665
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=2.3e-09 Score=109.24 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=19.6
Q ss_pred ccccEeeccCCccCccccccccCCCCcceEeccCC
Q 047103 590 PNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGC 624 (1095)
Q Consensus 590 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 624 (1095)
++|++|+|++|......+..+..+++|++|+|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC
Confidence 45666666665544433344555666666666554
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1e-09 Score=123.90 Aligned_cols=247 Identities=12% Similarity=0.060 Sum_probs=138.3
Q ss_pred CcceEEcccCCCCCC----CCCCcceeecccCCCCccccCC--CCC--------CccccEeeccCCccCccccccccCCC
Q 047103 549 ELRYLHWHQYPLKNE----DKAPKLKYIDLNHSSNLTRIPE--PSE--------TPNLDRMNLWNCTGLALIPSYIQNFN 614 (1095)
Q Consensus 549 ~Lr~L~l~~~~l~~l----~~l~~L~~L~Ls~n~~l~~~p~--~~~--------l~~L~~L~L~~~~~l~~lp~~i~~L~ 614 (1095)
+|+.|++++|.+..+ ..++.++.+.+..+ .+|+ |.+ +++|+.|+|.+ .....-+.+|.+++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred cCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 677888877776621 12223344444443 3443 677 99999999988 44444456789999
Q ss_pred CcceEeccCCCCCcccCCcccccccce-eeccCCc---ccCCCcc----ccCCce-EEEecCCCCccccCcc----CCCC
Q 047103 615 NLGNLSLEGCESLRCFPQNIHFVSSIK-INCSECV---NLSEFPR----ISGNVV-ELKLRHTPIEEVPSSI----DCLP 681 (1095)
Q Consensus 615 ~L~~L~L~~c~~l~~lp~~i~~l~~L~-l~l~~c~---~L~~~p~----~~~~L~-~L~L~~n~i~~lp~~i----~~l~ 681 (1095)
+|+.|++.+|.....-+..+..+.++. +...... .+..+.. ...+|+ .+.+.. ...++..+ ....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~--~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPR 202 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECT--TCCHHHHHHHTTCCGG
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecC--CCcHHHHHhhcccCcc
Confidence 999999998765554445555444443 2221100 0000000 001111 122211 11122111 1234
Q ss_pred CCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCc-cccCCCCCCEEEecCCCCCCCCCcccCCCc
Q 047103 682 DLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPS-SIENLEGLRELQLMGCTKLGSLPESLGNLK 760 (1095)
Q Consensus 682 ~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~ 760 (1095)
++..+.+.++-...........+++|+.|+|++|.+. .+|. .|.++++|+.|+|.+| +...-+..|.+++
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~--------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT--------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC--------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc--------eecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 4455555443111111111123678888888876433 3443 4677888888888876 4444555678888
Q ss_pred ccc-ccccCC-CcccC-cccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEec
Q 047103 761 ALE-FLSAAG-IIKIP-RDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHL 811 (1095)
Q Consensus 761 ~L~-~L~l~~-~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L 811 (1095)
+|+ .|.+.+ +..++ ..|.++++|+.|++++|+++.++. .+.++++|+.|+.
T Consensus 274 ~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 887 776654 45554 557778888888888888887766 5677778877753
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.92 E-value=7.1e-09 Score=109.32 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=115.7
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
+....+++|++..++++..++.... .+.+.|+|++|+||||+|+.+++.+........|+. +. .....+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE-MN--ASDERGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE-EE--TTCTTCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE-ec--cccccChHHHH
Confidence 4445689999999999999987643 234889999999999999999998643322222222 11 11112333333
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchHHH-Hh-cCc
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKRVL-EK-FGV 324 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~ 324 (1095)
..+....... ..-..++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ...
T Consensus 87 ~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 87 HKIKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 2222111100 001246889999999764 33455544444445677899998865421 11 122
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 325 KKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 325 ~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
...+++++++.++..+++...+...... --.+....+++.++|.|..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~ 201 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAI 201 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2488999999999999998877543221 123556678899999998644
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=2.1e-11 Score=127.14 Aligned_cols=129 Identities=19% Similarity=0.114 Sum_probs=70.6
Q ss_pred CcceeecccCCCCccccCC-------CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCccccccc
Q 047103 567 PKLKYIDLNHSSNLTRIPE-------PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSS 639 (1095)
Q Consensus 567 ~~L~~L~Ls~n~~l~~~p~-------~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~ 639 (1095)
..++.++++.+.+....|. +..+++|++|+|++|.... +| .+..+++|++|+|++|. +..+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~- 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVAD- 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHH-
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCC-
Confidence 3445555555544444432 4555666666666665443 45 56666666666666643 223343222222
Q ss_pred ceeeccCCcccCCCccccCCceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccc-cccCCCCCCCEEEccCcccc
Q 047103 640 IKINCSECVNLSEFPRISGNVVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLS-TNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 640 L~l~l~~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
+|+.|++++|.++.+| .+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 94 -------------------~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 -------------------TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -------------------HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -------------------cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 3446666666666665 45666666666666665443221 34566666666666666554
Q ss_pred c
Q 047103 719 G 719 (1095)
Q Consensus 719 ~ 719 (1095)
+
T Consensus 154 ~ 154 (198)
T 1ds9_A 154 N 154 (198)
T ss_dssp H
T ss_pred c
Confidence 4
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=1e-11 Score=129.53 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=100.7
Q ss_pred CCccccEeeccCCccCccccc------cccCCCCcceEeccCCCCCcccCCcccccccceeeccCCcccCCCccccCCce
Q 047103 588 ETPNLDRMNLWNCTGLALIPS------YIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECVNLSEFPRISGNVV 661 (1095)
Q Consensus 588 ~l~~L~~L~L~~~~~l~~lp~------~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~~L~~~p~~~~~L~ 661 (1095)
...+++.++++++...+.+|. .+..+++|++|+|++|. +..+| .+..++ +|+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~--------------------~L~ 73 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGME--------------------NLR 73 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHT--------------------TCC
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCC--------------------CCC
Confidence 344556666666555555554 88999999999999865 33355 444444 456
Q ss_pred EEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC--ccccCCCCCC
Q 047103 662 ELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP--SSIENLEGLR 739 (1095)
Q Consensus 662 ~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp--~~l~~l~~L~ 739 (1095)
.|++++|.++.+|..+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.+ +| ..+..+++|+
T Consensus 74 ~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~--------~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 74 ILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN--------WGEIDKLAALDKLE 143 (198)
T ss_dssp EEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC--------HHHHHHHTTTTTCS
T ss_pred EEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc--------hhHHHHHhcCCCCC
Confidence 8899999999999888888999999999987655 55 58889999999999987654 22 2577899999
Q ss_pred EEEecCCCCCCCCCc
Q 047103 740 ELQLMGCTKLGSLPE 754 (1095)
Q Consensus 740 ~L~L~~~~~~~~lp~ 754 (1095)
.|++++|.+.+..|.
T Consensus 144 ~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEECSCHHHHHHHT
T ss_pred EEEecCCcccccccc
Confidence 999999987655443
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=1.1e-08 Score=103.82 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=40.7
Q ss_pred eEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 661 VELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 661 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC
Confidence 578888888888887664 77888888887776666666677777777777765443
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.8e-08 Score=101.89 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=40.2
Q ss_pred ceEEEecCCCCccccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 660 VVELKLRHTPIEEVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 660 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
.+.|++++|.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 3578888888888887653 67777888777766666666666666666666665443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=2.2e-07 Score=107.46 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=133.1
Q ss_pred cceeecccCCCCccccCC--CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeecc
Q 047103 568 KLKYIDLNHSSNLTRIPE--PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCS 645 (1095)
Q Consensus 568 ~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~ 645 (1095)
+|+.+.|..+ ++.++. |.+ .+|+.+.|.. .....-+..|.++++|+.++|.+| .+..+|.......
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~------- 203 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYA------- 203 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTC-------
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeec-------
Confidence 5777777665 444443 555 3688888865 323333466778888888888764 3444444332222
Q ss_pred CCcccCCCccccCCceEEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCcccc-ccCCCCCCCEEEccCccccccccc
Q 047103 646 ECVNLSEFPRISGNVVELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLST-NICKLKSLRSLHLAFCEQLGKEAS 723 (1095)
Q Consensus 646 ~c~~L~~~p~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~L~~L~~L~Ls~~~~~~~~~~ 723 (1095)
+|+.+.|.. .++.++. .|.++++|+.++|.++ +..++. .|.+ .+|+.+.+..
T Consensus 204 -------------~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--------- 257 (401)
T 4fdw_A 204 -------------GIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--------- 257 (401)
T ss_dssp -------------CCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET---------
T ss_pred -------------ccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC---------
Confidence 344566653 3666654 3678888888888763 344443 3444 7788888843
Q ss_pred cccccC-ccccCCCCCCEEEecCCCCC-----CCCCcccCCCccccccccCC-CcccC-cccCCCCCCCeeeCCCCCCcc
Q 047103 724 NIKELP-SSIENLEGLRELQLMGCTKL-----GSLPESLGNLKALEFLSAAG-IIKIP-RDIGCLSSLVELDLSRNNFES 795 (1095)
Q Consensus 724 ~i~~lp-~~l~~l~~L~~L~L~~~~~~-----~~lp~~l~~L~~L~~L~l~~-~~~lp-~~l~~l~~L~~L~Ls~n~l~~ 795 (1095)
.+..++ ..|.++++|+.+.+.++... ..-+..|.++++|+.+.+.+ +..++ ..+.++++|+.|.|..| ++.
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 233442 35778888999988876654 23445677888888886654 55554 35677888888888554 776
Q ss_pred cCc-ccCCCCCCCEEeccCCC
Q 047103 796 LPS-GISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 796 lp~-~l~~L~~L~~L~L~~c~ 815 (1095)
++. .+.++ +|+.|.+.+|.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSS
T ss_pred EcHHhCCCC-CCCEEEEcCCC
Confidence 654 56777 88888888874
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1.8e-07 Score=108.25 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC-CcccC-cccCCCCCCCeeeCCCCCCcccCc-ccCCCC-CC
Q 047103 731 SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG-IIKIP-RDIGCLSSLVELDLSRNNFESLPS-GISHLS-RL 806 (1095)
Q Consensus 731 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~-~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~-~L 806 (1095)
.|.++++|+.+.|.+ .+...-...|.++++|+.+.+.. +..++ ..|.++ +|+.|++++|.+..++. .+.+++ ++
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 345555555555552 23333334455566666655432 34443 457777 99999999998877664 344443 55
Q ss_pred CEEeccCC
Q 047103 807 KWLHLFDC 814 (1095)
Q Consensus 807 ~~L~L~~c 814 (1095)
+.|.+..+
T Consensus 373 ~~l~vp~~ 380 (401)
T 4fdw_A 373 TVIRVPAE 380 (401)
T ss_dssp CEEEECGG
T ss_pred cEEEeCHH
Confidence 66665443
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=1.6e-07 Score=105.40 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=112.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCc-eEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEG-TCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~-~~~v~~v~~~~~~~~~l~~ 246 (1095)
+....+++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+++. . ... .+...
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~-~~~~~ 88 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN---MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDD-RGIDV 88 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSC-CSHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccc-cChHH
Confidence 3445679999999999999987543 3338899999999999999999986432 221 22222 1 111 23322
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhh-cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchHH-HHh-
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRF-RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKRV-LEK- 321 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~- 321 (1095)
+. +++..+.... ..+ .+++.++|+||++.. ..++.|...+.....+.++|+||+...- ...
T Consensus 89 i~-~~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 89 VR-NQIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HH-THHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HH-HHHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 22 2222211000 011 345889999999763 3344444443334567788888876532 111
Q ss_pred cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 322 FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 322 ~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
......+++++++.++..+++...+...... --.+....+++.++|.|..
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 1223589999999999999998876433221 1235567889999999954
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.64 E-value=1.1e-07 Score=96.05 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=55.6
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCc
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECV 648 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~ 648 (1095)
+.|++++|.+. .+|. + .++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N------------------------ 64 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN------------------------ 64 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS------------------------
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC------------------------
Confidence 45555555332 2332 2 255666666665555555555555555555555554
Q ss_pred ccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccc
Q 047103 649 NLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLG 719 (1095)
Q Consensus 649 ~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~ 719 (1095)
.|+.+|.. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|++..
T Consensus 65 --------------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 65 --------------------QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp --------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred --------------------CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 44444333 3556666666666665554444456666666666666665544
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=1e-07 Score=96.75 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred eeecccCCCCccccCC-CCCCccccEeeccCCccCccccccccCCCCcceEeccCCCCCcccCCcccccccceeeccCCc
Q 047103 570 KYIDLNHSSNLTRIPE-PSETPNLDRMNLWNCTGLALIPSYIQNFNNLGNLSLEGCESLRCFPQNIHFVSSIKINCSECV 648 (1095)
Q Consensus 570 ~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~l~l~~c~ 648 (1095)
+.++++++.+ +.+|. + .++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N------------------------ 67 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN------------------------ 67 (174)
T ss_dssp SEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------------------
T ss_pred cEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC------------------------
Confidence 4455555533 33333 2 255666666666555555555566666666666554
Q ss_pred ccCCCccccCCceEEEecCCCCccccCc-cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 649 NLSEFPRISGNVVELKLRHTPIEEVPSS-IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 649 ~L~~~p~~~~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
.|+.+|.. +..+++|+.|+|++|.+.+..+..+..+++|++|+|++|++.
T Consensus 68 --------------------~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 68 --------------------KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp --------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred --------------------CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 33334333 345555666666655544333333555666666666665544
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=1.4e-09 Score=124.75 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred CceEEEecCCCCcccc-----Ccc-CCCCCCcEEeccCCCCCC----ccccccCCCCCCCEEEccCcccccccccccccc
Q 047103 659 NVVELKLRHTPIEEVP-----SSI-DCLPDLETLEMSNCYSLK----SLSTNICKLKSLRSLHLAFCEQLGKEASNIKEL 728 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~lp-----~~i-~~l~~L~~L~Ls~~~~l~----~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~l 728 (1095)
+|+.|+|++|.++... ..+ ...++|+.|+|++|.+.. .++..+..+++|++|+|++|.+.. ..+..+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~---~g~~~L 203 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD---EGLELL 203 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH---HHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc---HHHHHH
Confidence 3455566666554221 112 234566666666665432 233344556666666666665443 222233
Q ss_pred CccccCCCCCCEEEecCCCC
Q 047103 729 PSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 729 p~~l~~l~~L~~L~L~~~~~ 748 (1095)
+..+...++|+.|+|++|.+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCC
T ss_pred HHHHhcCCCcCeEECCCCCC
Confidence 44445555666666666553
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.6e-09 Score=124.23 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=93.4
Q ss_pred CceEEEecCCCCcc--ccCccCCCCCCcEEeccCCCCCCcccccc-----CCCCCCCEEEccCccccccccccccccCcc
Q 047103 659 NVVELKLRHTPIEE--VPSSIDCLPDLETLEMSNCYSLKSLSTNI-----CKLKSLRSLHLAFCEQLGKEASNIKELPSS 731 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l-----~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~ 731 (1095)
+|++|+|++|.++. +......+++|+.|+|++|.+...-...+ ...++|++|+|++|.+.. .....++..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA---AGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH---HHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh---HHHHHHHHH
Confidence 45666666666652 12222345689999999997755433333 356889999999997654 234455666
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCcc-----cCcccCCCCCC
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFES-----LPSGISHLSRL 806 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~L~~L 806 (1095)
+..+++|++|+|++|.+...- ...++..+...++|+.|+|++|.|+. ++..+...++|
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g-----------------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L 241 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEG-----------------LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHH-----------------HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred HhcCCCcCEEeCCCCCCCcHH-----------------HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence 778889999999998743211 11233445556789999999998873 44456677889
Q ss_pred CEEeccCCCC
Q 047103 807 KWLHLFDCIM 816 (1095)
Q Consensus 807 ~~L~L~~c~~ 816 (1095)
++|+|++|+.
T Consensus 242 ~~L~Ls~N~i 251 (372)
T 3un9_A 242 ELLHLYFNEL 251 (372)
T ss_dssp CEEECTTSSC
T ss_pred CEEeccCCCC
Confidence 9999999864
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=5e-06 Score=96.03 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=56.6
Q ss_pred cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCccc
Q 047103 677 IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESL 756 (1095)
Q Consensus 677 i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l 756 (1095)
+..+..|+.+.+..+ ....-...+..+..|+.+.+....+. ...+..+.+|+.+.+..+ +...-..+|
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~----------~~~F~~~~~L~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP----------EKTFYGCSSLTEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC----------TTTTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCceeec----------cccccccccccccccccc-cceechhhh
Confidence 445555555555442 12222233445555555554432110 112445566666666432 222223345
Q ss_pred CCCccccccccCC-CcccC-cccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEecc
Q 047103 757 GNLKALEFLSAAG-IIKIP-RDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLF 812 (1095)
Q Consensus 757 ~~L~~L~~L~l~~-~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~ 812 (1095)
.++.+|+.+.+.. +..++ ..+.++++|+.++|..+ ++.++. .+.++++|+.++|.
T Consensus 317 ~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 317 ESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 5555555554432 33343 23455555666555544 444433 34555555555554
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=1.9e-07 Score=104.84 Aligned_cols=184 Identities=15% Similarity=0.177 Sum_probs=112.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE-ecccccCCCCCHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA-DVRRNSGTGGGLEHL 247 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~-~v~~~~~~~~~l~~l 247 (1095)
+...++++|++..++.+..++..+. ...+.|+|++|+||||+|+++++.+........++. +.... .+...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS---MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----RGINVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC---CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----HHHHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc----CchHHH
Confidence 3446789999999999999887643 334889999999999999999998643321111221 11000 011111
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhh-cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchHH-HHhc-
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRF-RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKRV-LEKF- 322 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~- 322 (1095)
... +...... ..+ .+++.++|+||++.. ...+.|...+.....+.++|+||....- ...+
T Consensus 94 ~~~-~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 REK-VKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHH-HHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-HHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111 1110000 001 256789999999764 4455555444444567889988876532 1111
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceee
Q 047103 323 GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKV 376 (1095)
Q Consensus 323 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 376 (1095)
.....+++++++.++..+++...+..... .--.+....+++.++|.|..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHH
Confidence 11247899999999999999877643221 12235567888999999876543
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=3e-07 Score=104.30 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=60.3
Q ss_pred EEEecCC-CCccccCccCCCCCCcEEeccC-CCCCCccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCC
Q 047103 662 ELKLRHT-PIEEVPSSIDCLPDLETLEMSN-CYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLR 739 (1095)
Q Consensus 662 ~L~L~~n-~i~~lp~~i~~l~~L~~L~Ls~-~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~ 739 (1095)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.+|++|+.|+|++|.+.+. .|..|.+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-------APDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-------CTTGGGSCSCCC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-------CHHHhcCCcCCC
Confidence 4677777 7888888 88888899999986 666555556788888888888888766552 233567778888
Q ss_pred EEEecCCCCCC
Q 047103 740 ELQLMGCTKLG 750 (1095)
Q Consensus 740 ~L~L~~~~~~~ 750 (1095)
.|+|++|.+.+
T Consensus 84 ~L~l~~N~l~~ 94 (347)
T 2ifg_A 84 RLNLSFNALES 94 (347)
T ss_dssp EEECCSSCCSC
T ss_pred EEeCCCCccce
Confidence 88888777543
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.45 E-value=1.1e-06 Score=98.53 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=138.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
+...++++|++..++++...+.... ....+.+.|+|++|+||||+|+++++.....| .++. ... . .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~---~-~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA---I-EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT---C-CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc---c-CChHH
Confidence 3456789999999999988875421 12345688999999999999999999775332 2222 111 0 11111
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCC------------------CCC
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQF------------------GLG 306 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~------------------~~g 306 (1095)
+ ...+. ..+ .+..+|+||+++... ..+.+...+... .++
T Consensus 80 l----~~~l~----------------~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 L----AAILA----------------NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H----HHHHT----------------TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred H----HHHHH----------------Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 11111 101 245688999997643 233332211110 124
Q ss_pred CEEEEEeCchHHH-Hhc--CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeeeccccc-
Q 047103 307 SRIIITTRDKRVL-EKF--GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVMGSSLY- 382 (1095)
Q Consensus 307 srIIiTTR~~~v~-~~~--~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~- 382 (1095)
.++|.||...... ..+ .....++++.++.+|..+++...+...... --.+....+++++.|.|-.+..+...+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5677776644221 111 123589999999999999998876432221 1235667889999999977654432221
Q ss_pred -----cccccc-------------ccCCCCHHHHHHhhhhhcccCCC--CHHHHHHHhhccC---CCccce-eccCCcee
Q 047103 383 -----QKSKTH-------------CFNDLTFEAKNIFLDIACFFEGE--DKDFVMRVLDDFV---SPELDV-LIDKSLVT 438 (1095)
Q Consensus 383 -----~~~~~~-------------sy~~L~~~~k~~fl~~a~f~~~~--~~~~v~~~l~~~~---~~~l~~-L~~~sLi~ 438 (1095)
+..... .+..++..++..+..++....+. ....+.+.+.-.. ...++. +++.++|+
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~ 296 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLK 296 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEE
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchh
Confidence 111000 34567777777777766544332 2343333332110 011333 67788887
Q ss_pred EeCCEEEeeHH
Q 047103 439 ILDNRLQMHDL 449 (1095)
Q Consensus 439 ~~~~~~~mHdl 449 (1095)
.......+-+.
T Consensus 297 ~~~~g~~~~~~ 307 (324)
T 1hqc_A 297 RTPRGRVPTEL 307 (324)
T ss_dssp EETTEEEECHH
T ss_pred cCCccceecHH
Confidence 66444444443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=2.3e-06 Score=94.11 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=94.3
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
+....++++|++..+++|.+.+... .-...+.+.|+|++|+||||||+++++.....| +.+ +..+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v-~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRV-VGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEE-EGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-ehHHH
Confidence 4455678999999999998887542 002345688999999999999999999864332 112 12221
Q ss_pred cCCCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh----------------hhHHHHhcCC
Q 047103 238 SGTGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----------------GQLEGLIGGL 300 (1095)
Q Consensus 238 ~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~ 300 (1095)
.....+ .....+.+ +......+..+|+|||++.. ..+..+...+
T Consensus 88 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 VKKFIGEGASLVKDI-------------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CCCSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHH-------------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 111011 11111111 22222345679999999653 1233333222
Q ss_pred CC--CCCCCEEEEEeCchHHHH-----hcCcceEEEccCCChhHHHHHHHHhhhc
Q 047103 301 DQ--FGLGSRIIITTRDKRVLE-----KFGVKKIYRVNGLQFDVALEQFCNYAFK 348 (1095)
Q Consensus 301 ~~--~~~gsrIIiTTR~~~v~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af~ 348 (1095)
.. ...+..||.||...+.+. .......+.++.++.++..+++..++..
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 11 134567777887553322 1134468999999999999999887643
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.37 E-value=2e-06 Score=98.59 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=112.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQK 249 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~ 249 (1095)
...++++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ... .+...-..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~-~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATP-CGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC--CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSC-CSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCC-CcccHHHH
Confidence 345679999999999999887543 234678999999999999999998764322100 000 01001111
Q ss_pred HHHHHhcCCCccc-----cCCCchHHHHhhh-----cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 250 QILSTILSEKLEV-----AGPNIPQFTKGRF-----RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 250 ~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
.+...-...-... ........+.+.+ .+++.++|+||++.. ...+.|...+.....+..+|++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 1111000000000 1111112222222 245789999999753 345555544443445667777776443
Q ss_pred -HHHh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeee
Q 047103 318 -VLEK-FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 318 -v~~~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
+... ......+++.+++.++..+++...+-..... --.+....+++.++|.|..+..+
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHH
Confidence 2111 1223689999999999999998766332211 12345667889999999876544
No 173
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=8.7e-07 Score=100.52 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=28.8
Q ss_pred EEEecCCCCccccC-ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCcccc
Q 047103 662 ELKLRHTPIEEVPS-SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQL 718 (1095)
Q Consensus 662 ~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~ 718 (1095)
.|+|++|.|+.+|. .|.++++|+.|+|++|.+.+..+..+..++ |+.|+|.+|.+.
T Consensus 60 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 60 NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44444444444433 345566666666666554433333333333 667777666554
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=1.6e-07 Score=106.76 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCCCCeeeCCCCCCcc-----cCcccCCCCCCCEEeccCCC
Q 047103 779 CLSSLVELDLSRNNFES-----LPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 779 ~l~~L~~L~Ls~n~l~~-----lp~~l~~L~~L~~L~L~~c~ 815 (1095)
.+++|++|+|+.|.+.. ++..+.++++|+.|+|++|.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35677777777777663 34444556777777777664
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.34 E-value=2.5e-06 Score=95.34 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=111.3
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc-CCCc-eEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG-GFEG-TCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~-~~~v~~v~~~~~~~~~l~~ 246 (1095)
+...++++|++..++.+.+.+..+. ...+.|+|++|+||||+|+.+++.+.. .+.. .+.+. ....... ..+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~ 87 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGI-DVVRH 87 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC---CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCT-TTSSH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC---CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccCh-HHHHH
Confidence 3445679999999999999887643 333889999999999999999998632 2221 12221 1110000 11111
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhh-cCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchH-HHHh-
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRF-RCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKR-VLEK- 321 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~- 321 (1095)
+...+... ..+ .+++.++|+|+++.. ...+.|...+.....+.++|+||.... +...
T Consensus 88 ~~~~~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 88 KIKEFART------------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp HHHHHHHS------------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred HHHHHHhc------------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 11111100 001 245789999999754 345666666655556778888887653 2111
Q ss_pred cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 322 FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 322 ~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
......+++.+++.++..+++...+-..... --.+....+++.++|.+..+.
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 1223589999999999999998776432221 123455677888888886543
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.30 E-value=9.7e-06 Score=87.74 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=96.9
Q ss_pred CCCCcccchhHHHHHHHhhhccCC---------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELS---------DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTG 241 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~ 241 (1095)
..++++|.+..++++.+++..... ...+.+.|+|++|+||||+|+++++.....| +.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc
Confidence 456899999988888776532110 2235678999999999999999999865432 2222 21111110
Q ss_pred CCH-HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-----------------hhHHHHhcCCCCC
Q 047103 242 GGL-EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-----------------GQLEGLIGGLDQF 303 (1095)
Q Consensus 242 ~~l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~~ 303 (1095)
.+. ....+. .+.........+|++|+++.. ..+..+...+...
T Consensus 80 ~~~~~~~~~~-------------------~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 80 GGLGAARVRS-------------------LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp TTHHHHHHHH-------------------HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred cChhHHHHHH-------------------HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 010 000111 122222345689999999764 1133333322221
Q ss_pred --CCCCEEEEEeCchHHHHh--c---CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 304 --GLGSRIIITTRDKRVLEK--F---GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 304 --~~gsrIIiTTR~~~v~~~--~---~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
..+..||.||.....+.. . .....+.++.++.++..+++..++-.... ..........+++.+.|.+
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCC
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCC
Confidence 234566667765442211 1 23468889999999999999887643222 1111222356666666654
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=3.9e-05 Score=88.55 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=44.3
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC-CcccCc-ccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCE
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG-IIKIPR-DIGCLSSLVELDLSRNNFESLPS-GISHLSRLKW 808 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~-~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~ 808 (1095)
+..+..|+.+.+....+ ....+..+.+|+.+.+.. +..++. .+.++++|+.++|..+ ++.++. .+.++.+|+.
T Consensus 272 F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccceeccCceee---ccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 45566666665544321 122355666666665432 444433 4566777777777543 666643 5666777777
Q ss_pred EeccCC
Q 047103 809 LHLFDC 814 (1095)
Q Consensus 809 L~L~~c 814 (1095)
+.|..+
T Consensus 348 i~lp~~ 353 (394)
T 4fs7_A 348 INFPLS 353 (394)
T ss_dssp ECCCTT
T ss_pred EEECcc
Confidence 766543
No 178
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=1.7e-06 Score=88.40 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=42.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...+.++|++..++++.+.+... ..+.+.|+|++|+||||||+++++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999988653 2456789999999999999999998643
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.27 E-value=1.4e-06 Score=92.91 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=98.8
Q ss_pred CCCCCcccch---hHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLVGLN---SRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
...++++|.+ ..++.+..+.... ..+.+.|+|++|+||||||+++++........+.|+. ..+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~------ 94 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI------ 94 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH------
Confidence 3456788743 4455555555432 3567889999999999999999998765544455554 2111100
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhh----HHHHhcCCCCC-CCC-CEEEEEeCch----
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ----LEGLIGGLDQF-GLG-SRIIITTRDK---- 316 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----l~~l~~~~~~~-~~g-srIIiTTR~~---- 316 (1095)
+ ... + +.+ .++.+||+||++.... .+.+...+... ..+ .++|+||+..
T Consensus 95 --------~---------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 --------S---------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp --------C---------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred --------H---------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 000 1 111 2356889999965421 22222211100 112 2588887632
Q ss_pred -----HHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 317 -----RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 317 -----~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
.+...+.....+++++++.++..+++...+-.... .--.+....+++.++|.+-.+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~ 214 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLF 214 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHH
Confidence 22222222378999999999999999887643221 1123556678888888775543
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.27 E-value=2.2e-05 Score=89.24 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=109.1
Q ss_pred ChHHHHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhcc---------CCCCcEEEEEEecCCCcHHHHHHH
Q 047103 146 NDALLIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCME---------LSDTVQIVGIWGMGGIGKITLATA 216 (1095)
Q Consensus 146 ~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~GmgGiGKTTLA~~ 216 (1095)
.+..+++.+...+..+. ++...++++|.+..+++|.+.+... .....+.|.|+|++|+||||||++
T Consensus 62 ~~~~~~~~i~~~i~~~~-----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG-----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp SCHHHHHHHHHHTBCCS-----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred CChHHHHHHHhhcccCC-----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence 35566666666665443 3445578999999999998887531 012356788999999999999999
Q ss_pred HHHHHhcCCCceEEEEecccccCCCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-----
Q 047103 217 IFNQFSGGFEGTCFVADVRRNSGTGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----- 290 (1095)
Q Consensus 217 v~~~~~~~F~~~~~v~~v~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----- 290 (1095)
+++.....| +.+ +..+......+ .....+.+ +...-..++.+|+||+++..
T Consensus 137 ia~~~~~~~---~~i-~~~~l~~~~~g~~~~~~~~~-------------------~~~a~~~~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 137 IASQSGATF---FSI-SASSLTSKWVGEGEKMVRAL-------------------FAVARCQQPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp HHHHTTCEE---EEE-EGGGGCCSSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETHHHHTBC--
T ss_pred HHHHcCCeE---EEE-ehHHhhccccchHHHHHHHH-------------------HHHHHhcCCeEEEEeCchhhhccCC
Confidence 998764322 222 22222111011 11111111 11112345689999999543
Q ss_pred --------hhHHHHhcCCC----CCCCCCEEEEEeCchHHHH-h--cCcceEEEccCCChhHHHHHHHHhhhccCCCCcc
Q 047103 291 --------GQLEGLIGGLD----QFGLGSRIIITTRDKRVLE-K--FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKD 355 (1095)
Q Consensus 291 --------~~l~~l~~~~~----~~~~gsrIIiTTR~~~v~~-~--~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~ 355 (1095)
..+..++..+. ....+..||.||.....+. . -.....+.++..+.++..+++...+-..... -
T Consensus 194 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l 271 (357)
T 3d8b_A 194 DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--L 271 (357)
T ss_dssp ----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--C
T ss_pred CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--c
Confidence 11222222221 1123445565665432211 1 1334678899999999999988776332211 1
Q ss_pred hHHHHHHHHHHhCCC
Q 047103 356 LIGHSWRVVRYAKGN 370 (1095)
Q Consensus 356 ~~~l~~~i~~~~~Gl 370 (1095)
-.+....+++.+.|.
T Consensus 272 ~~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAF 286 (357)
T ss_dssp CHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHcCCC
Confidence 124456777777774
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.24 E-value=2e-06 Score=100.51 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=92.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCc--eEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEG--TCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~--~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
...+.|+|++|+||||||+++++.+..++.. .+++. ...+..++...+... ....+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG--------KLNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHHHHHHHHHHTT--------CHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHcc--------cHHHHHHH
Confidence 6678999999999999999999987665532 23332 122334444443321 11224444
Q ss_pred hcCCeEEEEecCCCChh----hHHHHhcCCCC-CCCCCEEEEEeCch---------HHHHhcCcceEEEccCCChhHHHH
Q 047103 275 FRCMKVLIVLDNVSKVG----QLEGLIGGLDQ-FGLGSRIIITTRDK---------RVLEKFGVKKIYRVNGLQFDVALE 340 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~ 340 (1095)
+..+.-+|+|||++... ..+.+...+.. ...|..||+||... .+...+....++.+++++.++..+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 44356789999996432 22222222111 13567899998762 333334334578899999999999
Q ss_pred HHHHhhhccCC-CCcchHHHHHHHHHHhCCCCcc
Q 047103 341 QFCNYAFKENR-CPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 341 Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
++...+-.... .++ +....+++.+.|.+-.
T Consensus 271 iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 271 IARKMLEIEHGELPE---EVLNFVAENVDDNLRR 301 (440)
T ss_dssp HHHHHHHHHTCCCCT---THHHHHHHHCCSCHHH
T ss_pred HHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHH
Confidence 99887743221 112 3345667777776643
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.22 E-value=6.3e-05 Score=86.76 Aligned_cols=82 Identities=11% Similarity=0.154 Sum_probs=49.3
Q ss_pred ccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC-CcccC-cccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCE
Q 047103 732 IENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG-IIKIP-RDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKW 808 (1095)
Q Consensus 732 l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~-~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~ 808 (1095)
+.++++|+.+.+.. .+...-...|.++.+|+.+.+.. +..+. ..+.++.+|+.+.|..+ ++.+.. .+.+|++|+.
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 44555566555532 22222233455566666665532 44443 35677888888888654 676654 5788888888
Q ss_pred EeccCCC
Q 047103 809 LHLFDCI 815 (1095)
Q Consensus 809 L~L~~c~ 815 (1095)
+++.++.
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 8887763
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.19 E-value=7.5e-05 Score=86.08 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=58.4
Q ss_pred cccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCC-CcccCc-ccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCC
Q 047103 731 SIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAG-IIKIPR-DIGCLSSLVELDLSRNNFESLPS-GISHLSRLK 807 (1095)
Q Consensus 731 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~-~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~ 807 (1095)
.+.++.+|+.+.+..+. ...-...+.++++|+.+.+.. +..++. .+.++.+|+.++|..+ ++.+.. .+.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 46678888888886532 233345677888888887654 556654 4778899999999764 776654 678889999
Q ss_pred EEeccCC
Q 047103 808 WLHLFDC 814 (1095)
Q Consensus 808 ~L~L~~c 814 (1095)
.+.|..+
T Consensus 338 ~i~ip~s 344 (394)
T 4gt6_A 338 RIAIPSS 344 (394)
T ss_dssp EEEECTT
T ss_pred EEEECcc
Confidence 9988543
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=4.9e-05 Score=82.78 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=94.4
Q ss_pred CCCcccchhHHHHHHH-------hhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCH
Q 047103 172 YNGLVGLNSRIEQIKP-------LLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGL 244 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~-------~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l 244 (1095)
...++|....++++.. .+........+.+.|+|++|+||||||+++++.....| +.+. ....... ...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~~~~g-~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPDKMIG-FSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGGGCTT-CCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHHHhcC-Cch
Confidence 3568888877766665 23221124567889999999999999999999754332 1221 1110000 111
Q ss_pred HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh---------------hhHHHHhcCCCCCCCCCEE
Q 047103 245 EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV---------------GQLEGLIGGLDQFGLGSRI 309 (1095)
Q Consensus 245 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---------------~~l~~l~~~~~~~~~gsrI 309 (1095)
......+ ...+......+..+|+|||++.. ..+..+.......+....|
T Consensus 107 ~~~~~~~----------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKCQAM----------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHHHH----------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHHHH----------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1111111 01122223356789999998653 1133333322222334456
Q ss_pred EEEeCchHHHHhc----CcceEEEccCCCh-hHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 310 IITTRDKRVLEKF----GVKKIYRVNGLQF-DVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 310 IiTTR~~~v~~~~----~~~~~~~v~~L~~-~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
|.||.....+... .....+++++++. ++-.+++.... .. -.+....+++.+.|.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKGKK 230 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTSE
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCCC
Confidence 7788877655432 1246789999988 55555554421 11 1344567788888754
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.15 E-value=3.4e-05 Score=85.20 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=105.4
Q ss_pred HHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 154 IVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 154 iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+++.+...+. ...+....++++|.+..++.+.+.+.... ....+.+.|+|++|+||||+|+++++.....
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIV-EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTB-CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhc-cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4455554441 22344556789999999999988774310 0224678899999999999999999976432
Q ss_pred CCceEEEEecccccCC-CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh------------
Q 047103 225 FEGTCFVADVRRNSGT-GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG------------ 291 (1095)
Q Consensus 225 F~~~~~v~~v~~~~~~-~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------------ 291 (1095)
| +.+. ....... ........+.++ ......++.+|+||+++...
T Consensus 82 ~---~~i~-~~~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 82 F---LNIS-AASLTSKYVGDGEKLVRALF-------------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E---EEEE-STTTSSSSCSCHHHHHHHHH-------------------HHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred e---EEee-HHHHhhcccchHHHHHHHHH-------------------HHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 2 1221 1111111 011111122211 11223456788999996531
Q ss_pred -hHHHHhcC---CCC--CCCCCEEEEEeCchH-----HHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHH
Q 047103 292 -QLEGLIGG---LDQ--FGLGSRIIITTRDKR-----VLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHS 360 (1095)
Q Consensus 292 -~l~~l~~~---~~~--~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~ 360 (1095)
....++.. .+. .+.+..||.||...+ +... ....+.++..+.++..+++...+-.....- -.+..
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~ 214 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEAL 214 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHH
Confidence 11122211 111 123445666776542 2332 346788888888888888877663322211 12345
Q ss_pred HHHHHHhCCCCc
Q 047103 361 WRVVRYAKGNPL 372 (1095)
Q Consensus 361 ~~i~~~~~GlPL 372 (1095)
..+++.+.|.+-
T Consensus 215 ~~la~~~~g~~~ 226 (297)
T 3b9p_A 215 RRLAKITDGYSG 226 (297)
T ss_dssp HHHHHHTTTCCH
T ss_pred HHHHHHcCCCCH
Confidence 677888888764
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=2.4e-05 Score=87.61 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=100.3
Q ss_pred cccCCCCCcccchhHHHHHHHhhhc---------cCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 167 ISTDSYNGLVGLNSRIEQIKPLLCM---------ELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 167 ~~~~~~~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
.+....++++|.+..+++|.+.+.. ......+-|.|+|++|+|||+||+++++.....| +.+. ..+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l 87 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDL 87 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHH
Confidence 3445567899999999999887731 1112245688999999999999999999865332 1121 1111
Q ss_pred cCCCC-CHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCC---
Q 047103 238 SGTGG-GLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGL--- 300 (1095)
Q Consensus 238 ~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~--- 300 (1095)
..... ......+.+ +...-..+..+|+||+++... ....+...+
T Consensus 88 ~~~~~g~~~~~~~~~-------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 88 VSKWMGESEKLVKQL-------------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 148 (322)
T ss_dssp HTTTGGGHHHHHHHH-------------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG
T ss_pred hhcccchHHHHHHHH-------------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc
Confidence 00000 011111111 122223456799999997531 122232222
Q ss_pred CCCCCCCEEEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCC
Q 047103 301 DQFGLGSRIIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 301 ~~~~~gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 370 (1095)
.....+..||.||..... .. .....+.++..+.++..+++..++-...... -......+++.+.|.
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 149 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGY 219 (322)
T ss_dssp GTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTC
T ss_pred cccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCC
Confidence 122345566667765432 22 2446788999999999999988774322111 123345666666653
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=2.1e-05 Score=94.09 Aligned_cols=192 Identities=11% Similarity=0.129 Sum_probs=105.5
Q ss_pred cCCCCCcccchhHHHHHHHhhhccC--------------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEec
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMEL--------------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADV 234 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~--------------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v 234 (1095)
|...++++|++..++++.+++.... ....+.+.|+|++|+||||+|+++++.+. +. .+.+ +.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eC
Confidence 3456789999999999999986511 01346889999999999999999999873 21 1222 11
Q ss_pred ccccCCCCCHHHHHHHHHHHh-cCCCccccCCCchHHHHh--hhcCCeEEEEecCCCChh-----hHHHHhcCCCCCCCC
Q 047103 235 RRNSGTGGGLEHLQKQILSTI-LSEKLEVAGPNIPQFTKG--RFRCMKVLIVLDNVSKVG-----QLEGLIGGLDQFGLG 306 (1095)
Q Consensus 235 ~~~~~~~~~l~~l~~~ll~~l-~~~~~~~~~~~~~~~l~~--~L~~kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~g 306 (1095)
.. . .. ..+....+... ..... ........+ ....++.+||+|+++... .+..+...+.. .+
T Consensus 111 s~---~-~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~ 179 (516)
T 1sxj_A 111 SD---V-RS-KTLLNAGVKNALDNMSV----VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TS 179 (516)
T ss_dssp TS---C-CC-HHHHHHTGGGGTTBCCS----TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CS
T ss_pred CC---c-ch-HHHHHHHHHHHhccccH----HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cC
Confidence 11 1 12 12222222221 11110 011000100 123567899999996531 12333222111 23
Q ss_pred CEEEEEeCchH---HHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC-cceeee
Q 047103 307 SRIIITTRDKR---VLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP-LALKVM 377 (1095)
Q Consensus 307 srIIiTTR~~~---v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~l 377 (1095)
..||+++.+.. +.........++++.++.++..+++...+......-+ .+....|++.++|.+ -|+..+
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 34666655432 2222233468999999999999999887754332111 234567788888844 334333
No 188
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.2e-06 Score=91.77 Aligned_cols=163 Identities=15% Similarity=0.044 Sum_probs=97.7
Q ss_pred CcccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC-----c--eEEEEecccccCCCCCHH
Q 047103 174 GLVGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE-----G--TCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~-----~--~~~v~~v~~~~~~~~~l~ 245 (1095)
.+.||++++++|...|...- +.....+-|+|++|.|||++|++|++++....+ . .+++. . ....+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c----~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-A----LELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-T----TCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-c----cccCCHH
Confidence 38899999999988775521 245677889999999999999999998754221 1 23332 1 1113456
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhh---h---cCCeEEEEecCCCChhh---HHHHhcCCCCCCCCCE--EEEEeC
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGR---F---RCMKVLIVLDNVSKVGQ---LEGLIGGLDQFGLGSR--IIITTR 314 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~---L---~~kr~LlVLDdv~~~~~---l~~l~~~~~~~~~gsr--IIiTTR 314 (1095)
.+...|+.++.+.... .....+.+.+. + .++++++|||+++...+ +..+.. ++. ..+++ ||.++.
T Consensus 96 ~~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~-~~~-~~~s~~~vI~i~n 171 (318)
T 3te6_A 96 ALYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK-WIS-SKNSKLSIICVGG 171 (318)
T ss_dssp HHHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH-HHH-CSSCCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh-ccc-ccCCcEEEEEEec
Confidence 7788888887554322 11222223322 2 45689999999987532 333321 011 12333 333343
Q ss_pred chHH---------HHhcCcceEEEccCCChhHHHHHHHHhh
Q 047103 315 DKRV---------LEKFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 315 ~~~v---------~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..+. ...++ ...+..++++.+|-.+++..++
T Consensus 172 ~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp SSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred CcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 3211 12232 2578999999999999998776
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=5.4e-07 Score=102.36 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCCCCcEEeccCCCCCCcccccc---CCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCC
Q 047103 679 CLPDLETLEMSNCYSLKSLSTNI---CKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTK 748 (1095)
Q Consensus 679 ~l~~L~~L~Ls~~~~l~~lp~~l---~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 748 (1095)
.+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+.+ .....++..+.++++|+.|+|++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d---~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD---EGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH---HHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh---HHHHHHHhhcccCCcceEEECCCCcC
Confidence 46777777777766543322222 246677777777765544 12223444455667777777777654
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.5e-05 Score=88.52 Aligned_cols=194 Identities=11% Similarity=0.120 Sum_probs=109.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc--CCCceEEEEecccccCCCCCHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG--GFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~--~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
|....+++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++.+.. .+...+.-.+.. .. .+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~-~~~~~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DE-RGISI 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SC-CCHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC---CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cc-cchHH
Confidence 4456789999999999999987643 223889999999999999999987642 122222111111 11 23333
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchH-HHHhc-
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKR-VLEKF- 322 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~- 322 (1095)
+...+ .......... .... .....-..++-+|++|+++.. ...+.+...+.......++|++|.... +...+
T Consensus 106 ~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 106 VREKV-KNFARLTVSK-PSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HTTHH-HHHHHSCCCC-CCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHH-HHHhhhcccc-cchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 32222 1111100000 0000 011111235678999998653 233444433333344567777775442 21111
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 323 GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 323 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
.....+++++++.++..+.+...+-..... --.+..+.++++++|.|..+.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 112478999999999999998776332211 124566788999999887643
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.08 E-value=2e-05 Score=88.29 Aligned_cols=177 Identities=13% Similarity=0.093 Sum_probs=96.4
Q ss_pred CCCCCcc-cchh--HHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 170 DSYNGLV-GLNS--RIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 170 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
...+++| |... ....+..+..... .....+.|+|++|+||||||+++++.+...-...+++. ...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~ 75 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADD 75 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHH
Confidence 3455676 5332 2333444443322 23467889999999999999999998754312233443 122
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----hHHHHhcCCCC-CCCCCEEEEEeCch-----
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----QLEGLIGGLDQ-FGLGSRIIITTRDK----- 316 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~----- 316 (1095)
+...+...+... ....+...+. +.-+|++||+.... ..+.+...+.. ...|.+||+||...
T Consensus 76 ~~~~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 76 FAQAMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 233333332211 1111333333 35688999996533 12222222111 13456788887632
Q ss_pred ----HHHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 317 ----RVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 317 ----~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
.+...+....++++++ +.++..+++...+......- -.+....+++++ |..
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNV 201 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCH
Confidence 2333333346799999 99999999988774322211 134455666766 654
No 192
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.05 E-value=1.6e-05 Score=92.82 Aligned_cols=177 Identities=14% Similarity=0.212 Sum_probs=102.6
Q ss_pred cCCCCCcccchhHH---HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHH
Q 047103 169 TDSYNGLVGLNSRI---EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLE 245 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~ 245 (1095)
+...+++||.+..+ ..+...+..+ .+..+.|||.+|+||||||+.+++.....| +. +. ... .+..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f-----~~-l~--a~~-~~~~ 89 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIARYANADV-----ER-IS--AVT-SGVK 89 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHHHTTCEE-----EE-EE--TTT-CCHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHHHhCCCe-----EE-EE--ecc-CCHH
Confidence 44567899999888 6777777654 356788999999999999999999865443 21 11 111 3444
Q ss_pred HHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCCCCCCCEEEE-EeCchH--HHH
Q 047103 246 HLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQFGLGSRIII-TTRDKR--VLE 320 (1095)
Q Consensus 246 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIi-TTR~~~--v~~ 320 (1095)
.+...+ ... .......++.+|++|+++... +.+.|+..+.. +. -.+|. ||.+.. +..
T Consensus 90 ~ir~~~-~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 90 EIREAI-ERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHHHH-HHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCH
T ss_pred HHHHHH-HHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCH
Confidence 333222 110 111124567899999997643 33444433332 22 23443 555442 111
Q ss_pred -hcCcceEEEccCCChhHHHHHHHHhhhccC-----CCCcchHHHHHHHHHHhCCCCccee
Q 047103 321 -KFGVKKIYRVNGLQFDVALEQFCNYAFKEN-----RCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 321 -~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
...-..++.+++++.++..+++.+.+-... ....--.+....++++++|.+-.+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 112235889999999999999987763311 1111224556677788888765443
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.03 E-value=9.8e-05 Score=82.50 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=97.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhcc---------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE-eccccc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCME---------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA-DVRRNS 238 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~-~v~~~~ 238 (1095)
....++++|.+..++.|.+.+... .....+-|.|+|++|+|||+||+++++.... .-|+. +..+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHH
Confidence 345578999999999888766321 0123467889999999999999999998621 12221 111111
Q ss_pred CCC-CCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCC---
Q 047103 239 GTG-GGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLD--- 301 (1095)
Q Consensus 239 ~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~--- 301 (1095)
... .......+.++ ...-..++.+|++|+++... ....++..+.
T Consensus 84 ~~~~g~~~~~~~~lf-------------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 84 SKWLGESEKLVKNLF-------------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp CSSCCSCHHHHHHHH-------------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred hhhhhHHHHHHHHHH-------------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 100 01111112111 11123467899999997641 1222322221
Q ss_pred CCCCCCEEEEEeCchH-----HHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 302 QFGLGSRIIITTRDKR-----VLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 302 ~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
....+-.||.||.... +.. ..+..+.++..+.++..+++..++-..... --......+++.+.|..
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYS 215 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCC
T ss_pred ccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCC
Confidence 1233445555665432 222 345688999999999999998776322111 11233456677776653
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=6.7e-05 Score=85.11 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc---------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME---------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
+....++++|.+..++.|.+.+... .....+-|.|+|++|+|||+||+++++.....| +.+. ..+..
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l~ 121 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLV 121 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHHh
Confidence 3445578999999999998876321 112234578999999999999999999875332 1121 11110
Q ss_pred CCC-CCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCC---
Q 047103 239 GTG-GGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLD--- 301 (1095)
Q Consensus 239 ~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~--- 301 (1095)
... .......+.+ +...-..+..+|+||+++... ....++..+.
T Consensus 122 ~~~~g~~~~~~~~~-------------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 122 SKWMGESEKLVKQL-------------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp SCC---CHHHHHHH-------------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred hhhcchHHHHHHHH-------------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 000 0001111111 111223467899999997532 1222322221
Q ss_pred CCCCCCEEEEEeCchH-----HHHhcCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCC
Q 047103 302 QFGLGSRIIITTRDKR-----VLEKFGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGN 370 (1095)
Q Consensus 302 ~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 370 (1095)
....+..||.||...+ +.. .....+.++..+.++..+++..++-...... -......+++.+.|.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGY 252 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCC
Confidence 1133455666676442 233 3457888999999999999988764322111 123345677777774
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=3.4e-05 Score=87.50 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=104.6
Q ss_pred cCCCCCcccchhHHHHHHHhh-hccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEe--------------
Q 047103 169 TDSYNGLVGLNSRIEQIKPLL-CMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVAD-------------- 233 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~-------------- 233 (1095)
|...++++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-...+++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~--~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD--LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC--CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC--CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 344577999999999999888 4432 223 8999999999999999999865322111111100
Q ss_pred ---------cccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCC
Q 047103 234 ---------VRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQ 302 (1095)
Q Consensus 234 ---------v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~ 302 (1095)
+.. +..........++++..+.... ... ... .+.. +..++-++|||++.... ..+.+...+..
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITP-SDMGNNDRIVIQELLKEVAQME-QVD--FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECC-C----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecH-hhcCCcchHHHHHHHHHHHHhc-ccc--ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 000 0000000001122222211100 000 000 0000 23356789999997632 23333333322
Q ss_pred CCCCCEEEEEeCchH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcch-HHHHHHHHHHhCCCCccee
Q 047103 303 FGLGSRIIITTRDKR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDL-IGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 303 ~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~GlPLal~ 375 (1095)
...+.++|+||.+.. +...+ .....+++++++.++..+.+...+-..... -- .+....+++.++|.+-.+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHH
Confidence 245678888876542 22221 223689999999999999998876432211 11 2456678888999876543
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=3.4e-05 Score=85.68 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=87.8
Q ss_pred CcccchhHHHHHHHhhhcc------------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC--ceEEEE-eccccc
Q 047103 174 GLVGLNSRIEQIKPLLCME------------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE--GTCFVA-DVRRNS 238 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~------------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~--~~~~v~-~v~~~~ 238 (1095)
+++|.+..++.|.+++... .......+.|+|++|+||||+|+++++.+..... ...++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4788888888887665421 0134556889999999999999999987643221 111222 111111
Q ss_pred CCCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCC-----------ChhhHHHHhcCCCCCCCC
Q 047103 239 GTGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVS-----------KVGQLEGLIGGLDQFGLG 306 (1095)
Q Consensus 239 ~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~l~~l~~~~~~~~~g 306 (1095)
....+ ...-...+ +... +.-+|++|+++ ....++.|...+.....+
T Consensus 112 ~~~~g~~~~~~~~~-------------------~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQYIGHTAPKTKEV-------------------LKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CSSTTCHHHHHHHH-------------------HHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhcccccHHHHHHH-------------------HHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 11000 00000111 1111 23488999997 333445555444444556
Q ss_pred CEEEEEeCchH----------HHHhcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 307 SRIIITTRDKR----------VLEKFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 307 srIIiTTR~~~----------v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
.+||.||.... +... ....+++++++.++-.+++..++-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 78888886432 2222 236899999999999999987763
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=8.3e-05 Score=82.31 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=92.0
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
+....++++|.+..+++|.+.+... .-...+.|.|+|++|+||||||+++++..... |+. +
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~-v--- 80 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-I--- 80 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEE-E---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEE-E---
Confidence 3444567999999999988876531 01334678899999999999999999976422 222 1
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhh----------------HHHHhcCCC
Q 047103 238 SGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQ----------------LEGLIGGLD 301 (1095)
Q Consensus 238 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----------------l~~l~~~~~ 301 (1095)
+...+.... .+.. ...+...+.........+|++|+++.... ...++..+.
T Consensus 81 -----~~~~l~~~~---~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 81 -----KGPELLTMW---FGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp -----CHHHHHHHH---HTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred -----EhHHHHhhh---cCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 111222211 1111 11111223333344578999999975311 222322221
Q ss_pred C--CCCCCEEEEEeCchHHHHh--c---CcceEEEccCCChhHHHHHHHHhh
Q 047103 302 Q--FGLGSRIIITTRDKRVLEK--F---GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 302 ~--~~~gsrIIiTTR~~~v~~~--~---~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
. ...+..||.||...+.+.. . .....+.++..+.++-.+++..+.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 1 1234567777765533211 1 345689999999999999887665
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.0002 Score=83.74 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=102.1
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc---------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME---------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
+....++++|.+..++.|.+.+... .....+-|.|+|++|+|||+||+++++.... .-|+. +..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~-v~~-- 201 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS-ISS-- 201 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE-ECC--
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE-EeH--
Confidence 4455678999999999998876321 0123467889999999999999999998621 12222 100
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-------------hhHHHHhcCCCCC--
Q 047103 239 GTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-------------GQLEGLIGGLDQF-- 303 (1095)
Q Consensus 239 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~-- 303 (1095)
..+ .... .+. ....+...+...-..+..+|++|+++.. .....++..+...
T Consensus 202 ---~~l---~~~~---~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 202 ---SDL---VSKW---LGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ---C--------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred ---HHH---Hhhh---cch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 111 0000 000 1111111122222346789999999754 1234455544432
Q ss_pred -CCCCEEEEEeCchHHHHh---cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 304 -GLGSRIIITTRDKRVLEK---FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 304 -~~gsrIIiTTR~~~v~~~---~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
..+..||.||.....+.. -..+..+.++..+.++..++|..++-.... .--......+++.+.|..
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYS 337 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCC
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCC
Confidence 345667767765432111 134568889999999999999887633211 111233456777777743
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.92 E-value=3.9e-05 Score=77.82 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=41.7
Q ss_pred CCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..+.++|++..++.+.+.+... ..+.+.|+|++|+||||||+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~---~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR---TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS---SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988653 2456689999999999999999998744
No 200
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.91 E-value=0.0001 Score=84.05 Aligned_cols=194 Identities=13% Similarity=0.002 Sum_probs=102.9
Q ss_pred CCCcccchhHHHHHHHhh---hccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 172 YNGLVGLNSRIEQIKPLL---CMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
.+++||++..++.+..+. .... ...+.+.|+|++|+||||+|+++++.+...... +.+. .........+.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccchhHHH
Confidence 568999999887754444 3322 223678899999999999999999987643221 1121 111111112333333
Q ss_pred HHHHHH-hcCC--------------------Cc------cccCCCchHHHHhhh---------cCC----eEEEEecCCC
Q 047103 249 KQILST-ILSE--------------------KL------EVAGPNIPQFTKGRF---------RCM----KVLIVLDNVS 288 (1095)
Q Consensus 249 ~~ll~~-l~~~--------------------~~------~~~~~~~~~~l~~~L---------~~k----r~LlVLDdv~ 288 (1095)
.+.+.. ++.. .. ..........+++.+ .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333332 1100 00 000000111122111 123 2489999997
Q ss_pred Ch--hhHHHHhcCCCCCCCCCEEEEEeCc-----------------hHHHHhcCcceEEEccCCChhHHHHHHHHhhhcc
Q 047103 289 KV--GQLEGLIGGLDQFGLGSRIIITTRD-----------------KRVLEKFGVKKIYRVNGLQFDVALEQFCNYAFKE 349 (1095)
Q Consensus 289 ~~--~~l~~l~~~~~~~~~gsrIIiTTR~-----------------~~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~ 349 (1095)
.. ...+.|...+..... ..++++|.. ..+...+ ..+++++++.++..+++..++-..
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHHc
Confidence 64 334555444443322 245545431 2333333 357999999999999998876432
Q ss_pred CCCCcchHHHHHHHHHHhC-CCCcce
Q 047103 350 NRCPKDLIGHSWRVVRYAK-GNPLAL 374 (1095)
Q Consensus 350 ~~~~~~~~~l~~~i~~~~~-GlPLal 374 (1095)
.. .--.+....+++++. |.|-.+
T Consensus 276 ~~--~~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 276 DV--EMSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp TC--CBCHHHHHHHHHHHHHSCHHHH
T ss_pred CC--CCCHHHHHHHHHHhcCCCHHHH
Confidence 22 122355667888887 766543
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.90 E-value=0.00012 Score=84.33 Aligned_cols=179 Identities=14% Similarity=0.109 Sum_probs=96.5
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
.+...++++|.+..++.|...+.... ....+.|.|+|.+|+|||+||++++++....| +.+ +.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v-~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNI-SAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEE-CSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEe-eHHHhh
Confidence 34456789999999999998773210 02245788999999999999999988754322 111 111110
Q ss_pred CCC-CCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-------------hhHHHHhcCCC---
Q 047103 239 GTG-GGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-------------GQLEGLIGGLD--- 301 (1095)
Q Consensus 239 ~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~--- 301 (1095)
... .......+.+ +...-..+..+|+||+++.. .....+...+.
T Consensus 186 ~~~~g~~~~~~~~~-------------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKYVGEGEKLVRAL-------------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ------CHHHHHHH-------------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHH-------------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 000 0001111111 11111234578999999654 01122221111
Q ss_pred C-CCCCCEEEEEeCchHHHHh---cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCC
Q 047103 302 Q-FGLGSRIIITTRDKRVLEK---FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNP 371 (1095)
Q Consensus 302 ~-~~~gsrIIiTTR~~~v~~~---~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 371 (1095)
. ....-+||.||...+.+.. -.....+.++..+.++..+++...+-..... -..+....+++.+.|..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYS 318 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCC
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCC
Confidence 1 1223455556654322111 1234578899999999999998776332221 11234567778877754
No 202
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.89 E-value=3.2e-05 Score=87.17 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=102.4
Q ss_pred CCCCCcccchhHHHHHHHhhhccC--CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL--SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHL 247 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l 247 (1095)
...++++|++..++++..++.... ......|.|+|++|+||||||++++++....| +.+. ... . .....+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~-~---~~~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM-I---EKSGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG-C---CSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh-c---cchhHH
Confidence 356789999999999999886531 13345688999999999999999998765433 1221 111 0 111111
Q ss_pred HHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCC------------------CCCC
Q 047103 248 QKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQF------------------GLGS 307 (1095)
Q Consensus 248 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~gs 307 (1095)
.. .+ .. ..+..+|+||+++.. ...+.|...+... .++.
T Consensus 98 ~~-~~-------------------~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 AA-IL-------------------TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp HH-HH-------------------HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred HH-HH-------------------Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11 11 11 124568889999754 2223332221111 1234
Q ss_pred EEEEEeCchHHH-Hh--cCcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 308 RIIITTRDKRVL-EK--FGVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 308 rIIiTTR~~~v~-~~--~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
++|.||...... .. -.....++++.++.++..+++...+-.... .--.+....+++.+.|.|-.+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHH
Confidence 666666553221 11 123468999999999999999877633221 1223556677778888884443
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.88 E-value=0.00017 Score=80.74 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=103.2
Q ss_pred cCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
|...++++|.+..++.+..++..+. ...++.+.|++|+||||+|+++++.+... .+.+. . .. .+...+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~--~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~----~~-~~~~~i~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK--IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G----SD-CKIDFVR 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC--CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T----TT-CCHHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC--CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c----cc-cCHHHHH
Confidence 3456789999999999999987542 33567888999999999999999886422 12222 1 11 2333332
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh---hHHHHhcCCCCCCCCCEEEEEeCchH-----HHH
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG---QLEGLIGGLDQFGLGSRIIITTRDKR-----VLE 320 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIIiTTR~~~-----v~~ 320 (1095)
..+....... ...+++-+||+||++... ..+.|...+.....+.++|+||.... +..
T Consensus 91 ~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 91 GPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp THHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 2221111100 012367899999998754 34444433332234568888887653 222
Q ss_pred hcCcceEEEccCCChhHHHHHHH-------HhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 321 KFGVKKIYRVNGLQFDVALEQFC-------NYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 321 ~~~~~~~~~v~~L~~~ea~~Lf~-------~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
.+ ..++++.++.++-.+++. ..+-.... .-.-.+....+++.++|.+-.
T Consensus 156 R~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 RC---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSCHHHHHHHHHHTCSCTTH
T ss_pred hC---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHhCCCCHHH
Confidence 22 478999999888544332 22211111 111125666788888887664
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=3.8e-06 Score=86.01 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=63.9
Q ss_pred cCCCCCCcEEeccCC-CCCC----ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCC
Q 047103 677 IDCLPDLETLEMSNC-YSLK----SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGS 751 (1095)
Q Consensus 677 i~~l~~L~~L~Ls~~-~~l~----~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 751 (1095)
+...++|++|+|++| .+.. .+...+...++|++|+|++|.+.. .....+...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~---~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND---PVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH---HHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh---HHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 455667777777776 4332 233445556677777777766543 22233334444556667777766654321
Q ss_pred CCcccCCCccccccccCCCcccCcccCCCCCCCeeeC--CCCCCcc-----cCcccCCCCCCCEEeccCCC
Q 047103 752 LPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDL--SRNNFES-----LPSGISHLSRLKWLHLFDCI 815 (1095)
Q Consensus 752 lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~L~~L~~L~L~~c~ 815 (1095)
+...+...+...++|++|+| ++|.+.. +...+...++|++|+|++|.
T Consensus 109 -----------------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 -----------------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -----------------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -----------------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 01112233344456667777 6666652 33344555666666666663
No 205
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.71 E-value=0.0019 Score=73.71 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=71.0
Q ss_pred ccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-ccccCCCCCCEEEecCCCCCCCCCc
Q 047103 676 SIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP-SSIENLEGLRELQLMGCTKLGSLPE 754 (1095)
Q Consensus 676 ~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~ 754 (1095)
.+....+|+.+.+..+ ....-...+.++.+|+.+.+..+ +..+. ..+.++.+|+.+.+..+ +...-..
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~---------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN---------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT---------CCEECTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC---------ccEeCccccceeehhcccccccc-ceecccc
Confidence 3455666666666542 22222334556667777766432 22222 23556667777776542 2222233
Q ss_pred ccCCCccccccccC--CCcccC-cccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEecc
Q 047103 755 SLGNLKALEFLSAA--GIIKIP-RDIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLF 812 (1095)
Q Consensus 755 ~l~~L~~L~~L~l~--~~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~ 812 (1095)
.|.++++|+.+.+. .+..++ ..+.++.+|+.+.|..+ ++.+.. .+.++++|+.+.|.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 56667777776553 355554 35677888888888654 666654 56677777766653
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=2.9e-05 Score=80.48 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCCCCcccchh----HHHHHHHhhhccCCC-CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 170 DSYNGLVGLNS----RIEQIKPLLCMELSD-TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 170 ~~~~~~vGr~~----~~~~l~~~L~~~~~~-~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+++++.+. .++.+..++...... ..+.+.|+|.+|+||||||+++++....+...++|+.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34567777553 334444555433211 1267889999999999999999998866555556654
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=6.7e-05 Score=76.14 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCcccc----hhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 172 YNGLVGL----NSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 172 ~~~~vGr----~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+++++. ...++.+.+++..-....-..++|+|++|+||||||+++++.+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556653 33334444444322212346889999999999999999999874
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00049 Score=77.91 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=92.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
....+++.|.++.+++|.+.+... .-...+=|.++|++|.|||+||+++++.....| +.+ ...+..
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v-~~s~l~ 219 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRV-SGAELV 219 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEE-EGGGGS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEE-EhHHhh
Confidence 344578999999999998766431 113346688999999999999999999876544 122 222222
Q ss_pred CCCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCC
Q 047103 239 GTGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLD 301 (1095)
Q Consensus 239 ~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~ 301 (1095)
....+ -....++++. ..-...+.+|++|+++... .+..++..++
T Consensus 220 sk~vGese~~vr~lF~-------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFV-------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp CSSTTHHHHHHHHHHH-------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHH-------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 21111 1122222222 1123457899999986421 1333443333
Q ss_pred CC--CCCCEEEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhh
Q 047103 302 QF--GLGSRIIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 302 ~~--~~gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+ ..+-.||.||-..+. ...-..+..++++..+.++..++|..+.
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 22 233345566654433 2222457899999999999999998776
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.61 E-value=3.9e-05 Score=83.32 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=84.8
Q ss_pred cCCCCCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
....++++|.+..++++.+++..-. ....+-+.|+|++|+||||||+++++.....|-. + +..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~---- 78 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGS---- 78 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSC----
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chH----
Confidence 3456789999999998887764210 0112337799999999999999999986543311 1 000
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-----------------hHHHHhcCCCC
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-----------------QLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~l~~l~~~~~~ 302 (1095)
.+. ....+. ........+......+..+|+||+++... .+..+...+..
T Consensus 79 ---~~~-------~~~~~~----~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 79 ---SFI-------EMFVGL----GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp ---TTT-------TSCSSS----CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred ---HHH-------Hhhcch----HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 000 000000 01111112333333456799999996531 13334443332
Q ss_pred CC---CCCEEEEEeCchHHHH-----hcCcceEEEccCCChhHHHHHHHHhh
Q 047103 303 FG---LGSRIIITTRDKRVLE-----KFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 303 ~~---~gsrIIiTTR~~~v~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.. ....||.||.....+. .......+.++.++.++..+++..++
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 21 2245666776553221 11233567777778777777775544
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00044 Score=74.44 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=40.6
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC---------CCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL---------SDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+....++++|.+..++++.+++..-. ....+-+.|+|++|+||||||+++++....
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 34456789999998888876543210 012345789999999999999999997653
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.57 E-value=0.00039 Score=81.91 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=88.1
Q ss_pred CCCcccchhHHHHHHHhhhcc-----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 172 YNGLVGLNSRIEQIKPLLCME-----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
..+++|.+..+++|.+++... . ...+-|.|+|.+|+|||++|++++++....| +.+ +..+....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~ 277 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhh
Confidence 457999999999998887542 2 3345688999999999999999998753222 222 22111111
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh-------------hhHHHHhcCCCC--CCC
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV-------------GQLEGLIGGLDQ--FGL 305 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~ 305 (1095)
..+- .... ....+......+..+|+||+++.. .....|+..+.. ...
T Consensus 278 ~~g~--~~~~----------------~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 278 LAGE--SESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp CTTH--HHHH----------------HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred hcch--hHHH----------------HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 0110 0000 011133333456789999999421 112222222221 123
Q ss_pred CCEEEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 306 GSRIIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 306 gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
+-+||.||..... .........+.++..+.++..+++..++-
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 3456666665432 11123446789999999999999988763
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00083 Score=77.27 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=93.6
Q ss_pred cCCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 169 TDSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
....+++.|.++.+++|.+.+... .-...+=|.++|++|.|||+||+++++.....| +.+ ...+..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v-~~s~l~ 252 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFS-PASGIV 252 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEE-EGGGTC
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-ehhhhc
Confidence 334568899999999988766431 013356788999999999999999999876443 222 222222
Q ss_pred CCCCCH-HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCC
Q 047103 239 GTGGGL-EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLD 301 (1095)
Q Consensus 239 ~~~~~l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~ 301 (1095)
....+- ....+.++ ...-.....+|++|+++... .+..++..++
T Consensus 253 sk~~Gese~~ir~~F-------------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 253 DKYIGESARIIREMF-------------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp CSSSSHHHHHHHHHH-------------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH-------------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 211111 12222222 11223457899999996421 1233433332
Q ss_pred CC--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhhh
Q 047103 302 QF--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 302 ~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
.+ ..+-.||.||-..+.+.. -..+..++++..+.++..++|..+.-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 22 234567777765544321 12567899999999999999987763
No 213
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.54 E-value=0.00039 Score=78.07 Aligned_cols=172 Identities=10% Similarity=0.095 Sum_probs=98.4
Q ss_pred hhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCC---------------------ceEEEEecccc
Q 047103 179 NSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFE---------------------GTCFVADVRRN 237 (1095)
Q Consensus 179 ~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~---------------------~~~~v~~v~~~ 237 (1095)
++..+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... ...++. ..+
T Consensus 8 ~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEK- 83 (334)
T ss_dssp HHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCT-
T ss_pred HHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccc-
Confidence 34455555555442 22456889999999999999999997643221 111111 000
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCc
Q 047103 238 SGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRD 315 (1095)
Q Consensus 238 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 315 (1095)
.....++..+ +++...+... -..+++-++|+|+++.. ...+.|+..+....++..+|++|.+
T Consensus 84 ~~~~~~i~~i-r~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 84 GKNTLGVDAV-REVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp TCSSBCHHHH-HHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred cCCCCCHHHH-HHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 0000122221 1122211100 01245678899999764 3455555555444556777777766
Q ss_pred hH-HHHhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcceeee
Q 047103 316 KR-VLEKF-GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLALKVM 377 (1095)
Q Consensus 316 ~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 377 (1095)
.+ +...+ .-...+++++++.++..+.+...+ .. -.+.+..+++.++|.|..+..+
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 53 33222 234689999999999999988765 11 1244567889999998765443
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=8.4e-06 Score=83.36 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCceEEEecCC-CCcc-----ccCccCCCCCCcEEeccCCCCCC----ccccccCCCCCCCEEEccCccccccccccccc
Q 047103 658 GNVVELKLRHT-PIEE-----VPSSIDCLPDLETLEMSNCYSLK----SLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 658 ~~L~~L~L~~n-~i~~-----lp~~i~~l~~L~~L~Ls~~~~l~----~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
.+|++|+|++| .|.. +...+...++|++|+|++|.+.. .+...+...++|++|+|++|.+.. .+...
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~---~g~~~ 112 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG---SGILA 112 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH---HHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH---HHHHH
Confidence 46789999998 8863 55667788999999999998654 244456667899999999998765 34455
Q ss_pred cCccccCCCCCCEEEe--cCCCCCCCCCcccCCCccccccccCCCcccCcccCCCCCCCeeeCCCCCCc
Q 047103 728 LPSSIENLEGLRELQL--MGCTKLGSLPESLGNLKALEFLSAAGIIKIPRDIGCLSSLVELDLSRNNFE 794 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L--~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 794 (1095)
+...+...++|++|+| ++|.+...- ...+...+...++|++|+|++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g-----------------~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNV-----------------EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHH-----------------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHH-----------------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6667788889999999 777753221 1112233445678999999999875
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.00089 Score=84.04 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=88.9
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC------CCceEEEEecccccC---C
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG------FEGTCFVADVRRNSG---T 240 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~------F~~~~~v~~v~~~~~---~ 240 (1095)
...+.++|++..++++.+.|.... ..-+.|+|.+|+||||+|+.++.++... ....+|..+...... .
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~---~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred CCCCCccCCHHHHHHHHHHHhccC---CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 345679999999999999887543 3456799999999999999999986432 123333322211100 0
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh----------hh-HHHHhcCCCCCCCCCEE
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----------GQ-LEGLIGGLDQFGLGSRI 309 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------~~-l~~l~~~~~~~~~gsrI 309 (1095)
........+.++ ...-..++.+|++|+++.. .+ .+.+...+. ..+-++
T Consensus 260 ~g~~e~~l~~~~-------------------~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~ 318 (758)
T 1r6b_X 260 RGDFEKRFKALL-------------------KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRV 318 (758)
T ss_dssp SSCHHHHHHHHH-------------------HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEE
T ss_pred cchHHHHHHHHH-------------------HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEE
Confidence 011111111111 1111234688999999754 12 233333332 234567
Q ss_pred EEEeCchHHHHhc-------CcceEEEccCCChhHHHHHHHHhh
Q 047103 310 IITTRDKRVLEKF-------GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 310 IiTTR~~~v~~~~-------~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
|.+|......... .--..+.++.++.++..+++...+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 7776654432111 111368999999999999987644
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0006 Score=78.24 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|.++.+++|.+.+... .-...+-|.++|++|.|||+||++++++....| +.+ ...+...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~v-s~s~L~s 281 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRV-IGSELVQ 281 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEE-EGGGGCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEE-EhHHhhc
Confidence 34468999999999998765320 113456788999999999999999999876443 122 2222222
Q ss_pred CCCCH-HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCC
Q 047103 240 TGGGL-EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 302 (1095)
...+- ....+.++ ...-.....+|++|+++... .+..++..++.
T Consensus 282 k~vGesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 282 KYVGEGARMVRELF-------------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp CSSSHHHHHHHHHH-------------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHH-------------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 11111 12222222 12223457899999986421 12223333322
Q ss_pred CC--CCCEEEEEeCchHH-----HHhcCcceEEEccCCChhHHHHHHHHhh
Q 047103 303 FG--LGSRIIITTRDKRV-----LEKFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 303 ~~--~gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
+. .+-.||.||-..+. .+.-..+..++++..+.++..++|..++
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 22 23344556654432 2212357889999999999999998776
No 217
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00039 Score=79.95 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=93.0
Q ss_pred ccCCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
+....+++.|.+..+++|.+.+... .-...+-|.++|++|.|||+||+++++.....| +.....+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 3344578999999999988765321 113456788999999999999999999866433 22222222
Q ss_pred cCCCCCH-HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCC
Q 047103 238 SGTGGGL-EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGL 300 (1095)
Q Consensus 238 ~~~~~~l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~ 300 (1095)
.....+- ....+.++.. .-.....+|++|+++... .+..++..+
T Consensus 252 ~~~~vGese~~ir~lF~~-------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFAL-------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp CSSCSSHHHHHHHHHHHH-------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHH-------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 2221111 1222222211 112347899999985320 123344444
Q ss_pred CCCC--CCCEEEEEeCchHHHH-----hcCcceEEEccCCChhHHHHHHHHhhh
Q 047103 301 DQFG--LGSRIIITTRDKRVLE-----KFGVKKIYRVNGLQFDVALEQFCNYAF 347 (1095)
Q Consensus 301 ~~~~--~gsrIIiTTR~~~v~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af 347 (1095)
+.+. .+-.||.||...+.+. .-..+..++++..+.++..++|..+.-
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 4332 2334555776554332 113567899999999999999987653
No 218
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.47 E-value=0.00069 Score=79.73 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-----CceEEEEecccccCCCCCH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-----EGTCFVADVRRNSGTGGGL 244 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-----~~~~~v~~v~~~~~~~~~l 244 (1095)
...+.+||++..++.+...|.... ..-+.|+|.+|+||||||+.++..+...+ ...-++. + +.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~---~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-l--------~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-L--------DM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C----------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e--------eC
Confidence 345679999999999999987633 23457999999999999999999875432 1111221 0 00
Q ss_pred HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHh---
Q 047103 245 EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEK--- 321 (1095)
Q Consensus 245 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~--- 321 (1095)
. .... ..........+...-..++.+|++| ...+..+.|...+. ...-++|.+|........
T Consensus 245 ~-------~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 245 G-------TKYR----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred C-------cccc----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0 0000 0000111111222223457888999 23333344444443 123456655554431110
Q ss_pred ----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 322 ----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 322 ----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..--..+.++.++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0112368999999999999998654
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.46 E-value=0.00012 Score=71.50 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=36.2
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+++|....++++.+.+..-. ..-.-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988876533 222346799999999999999999864
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.001 Score=76.39 Aligned_cols=153 Identities=19% Similarity=0.217 Sum_probs=84.8
Q ss_pred CCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
..+++.|.+..+++|.+.+... .-...+-|.++|++|.|||+||+++++.....| +.+ +..+....
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v-~~~~l~~~ 245 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRV-NGSEFVHK 245 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEE-EGGGTCCS
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEE-ecchhhcc
Confidence 3467899999999988766431 013456688999999999999999999876443 122 22222211
Q ss_pred CCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCCC
Q 047103 241 GGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQF 303 (1095)
Q Consensus 241 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~ 303 (1095)
..+ .....++++. ..-...+.+|++|+++... .+..++..++.+
T Consensus 246 ~~Ge~e~~ir~lF~-------------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 246 YLGEGPRMVRDVFR-------------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp SCSHHHHHHHHHHH-------------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHHHHHH-------------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 111 1122222222 1123457888999884210 123333322211
Q ss_pred --CCCCEEEEEeCchHH-----HHhcCcceEEEccCC-ChhHHHHHHHHhh
Q 047103 304 --GLGSRIIITTRDKRV-----LEKFGVKKIYRVNGL-QFDVALEQFCNYA 346 (1095)
Q Consensus 304 --~~gsrIIiTTR~~~v-----~~~~~~~~~~~v~~L-~~~ea~~Lf~~~a 346 (1095)
..|-.||.||-..+. .+.-..+..++++.+ +.++-.++|..+.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~ 357 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA 357 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHh
Confidence 234456667754432 222234567788755 5556666776655
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=0.0015 Score=76.30 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=89.7
Q ss_pred CCCCCcccchhHHHHHHHhhhccC--------C-CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL--------S-DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~--------~-~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
...++++|.++.++++.+++..-. + .-.+-|.|+|++|.||||||++++++....| +.+ +..+....
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~i-s~~~~~~~ 88 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHI-SGSDFVEL 88 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEE-EGGGTTTC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeC-CHHHHHHH
Confidence 445789999998888877654311 0 1123478999999999999999999765333 222 22222111
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh----------------hhHHHHhcCCCCC-
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----------------GQLEGLIGGLDQF- 303 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~- 303 (1095)
..+... . .....+.........+|+||+++.. ..+..++..+..+
T Consensus 89 ~~g~~~--~----------------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 89 FVGVGA--A----------------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp CTTHHH--H----------------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred HhcccH--H----------------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 111100 0 0011133333456789999999542 1233444332211
Q ss_pred -CCCCEEEEEeCchHHHHh--c---CcceEEEccCCChhHHHHHHHHhh
Q 047103 304 -GLGSRIIITTRDKRVLEK--F---GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 304 -~~gsrIIiTTR~~~v~~~--~---~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..+-.||.||...+.+.. . ..+..+.++..+.++-.+++..++
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 234567777776654321 1 245588999999888888887665
No 222
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.0011 Score=74.50 Aligned_cols=181 Identities=14% Similarity=0.222 Sum_probs=102.1
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
....+++|.+..++.+...+..+. +..+.++|+.|+||||+|+.++..+... +...+.-.+. +.. .+...+.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~---~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~-~~~~~ir 94 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGK---LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDD-RGIDVVR 94 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSC-CSHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccc-ccHHHHH
Confidence 345678899988888888876542 3338899999999999999999976432 2211111111 111 2333332
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCchH-HHHh-cCc
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDKR-VLEK-FGV 324 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~ 324 (1095)
+. ...+.... ..+...+-++|+|+++.. ...+.|...+.......++|++|.... +... ...
T Consensus 95 ~~-i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 95 NQ-IKDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp TH-HHHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HH-HHHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 21 11111000 001223668899998643 333444333322335567777775442 2111 122
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcc
Q 047103 325 KKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLA 373 (1095)
Q Consensus 325 ~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 373 (1095)
...+++.+++.++..+.+...+-.... .--.+..+.+++.++|.+--
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 357899999999988888766522111 11134566788888887753
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.016 Score=66.00 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=91.7
Q ss_pred cCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccccccccccccccC-ccccCCCCCCEEEecCCCCCCCCCcc
Q 047103 677 IDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQLGKEASNIKELP-SSIENLEGLRELQLMGCTKLGSLPES 755 (1095)
Q Consensus 677 i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~ 755 (1095)
+.....+..+.+... ........+....+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ ....-...
T Consensus 190 ~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~---------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 190 YPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG---------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp CCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT---------CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred ccccccccccccccc-eeEEeecccccccccceeeeccc---------eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 334445555554432 12222334556777888777532 22222 34667889999988654 33333456
Q ss_pred cCCCccccccccCC-CcccCc-ccCCCCCCCeeeCCCCCCcccCc-ccCCCCCCCEEeccCCCCcccCCCCCCCccceee
Q 047103 756 LGNLKALEFLSAAG-IIKIPR-DIGCLSSLVELDLSRNNFESLPS-GISHLSRLKWLHLFDCIMLQSSLPELPPHLVMLD 832 (1095)
Q Consensus 756 l~~L~~L~~L~l~~-~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~L~~L~~L~L~~c~~l~~~lp~l~~sL~~L~ 832 (1095)
+.++.+|+.+.+.. +..++. .+..+++|+.+.+.++.++.++. .+.++.+|+.+.|..+ ++. ++. --
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~-I~~-------~a 328 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKT-IQV-------YA 328 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCE-ECT-------TT
T ss_pred cceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccE-EHH-------HH
Confidence 77788888886643 555554 46788999999999988988865 6788899999887543 222 211 11
Q ss_pred cccCccCcccCCCCcch
Q 047103 833 ARNCKRLQSLPELPSCL 849 (1095)
Q Consensus 833 l~~c~~L~~lp~~~~~l 849 (1095)
-.+|.+|+++. +|..+
T Consensus 329 F~~C~~L~~i~-ip~~v 344 (379)
T 4h09_A 329 FKNCKALSTIS-YPKSI 344 (379)
T ss_dssp TTTCTTCCCCC-CCTTC
T ss_pred hhCCCCCCEEE-ECCcc
Confidence 24677777663 34444
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.41 E-value=0.00063 Score=75.36 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++|.+..++.+...+.... ......+.|+|.+|+||||+|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 357899999888888775531 122468999999999999999999998654
No 225
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.36 E-value=0.00048 Score=87.45 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...+.+|||+..++++...|.... .+.+.++|.+|+||||||+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999886643 344679999999999999999998743
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0014 Score=74.56 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|.++.+++|.+.+... .-...+=|.++|++|.|||+||+++++.....| +..+..+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhh
Confidence 34567899999999998866431 013356788999999999999999999876443 1112222222
Q ss_pred CCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh----------------hhHHHHhcCCCC
Q 047103 240 TGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----------------GQLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~ 302 (1095)
...+ -....+.++.. .-.....+|++|+++.. ..+..++..++.
T Consensus 255 k~vGesek~ir~lF~~-------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKV-------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSSHHHHHHHHHHHH-------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHH-------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 2111 12222332221 11245788899988632 012333333322
Q ss_pred C--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 303 F--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 303 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
+ ..+-.||.||-..+.+.. -..+..++++..+.++..++|..+.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 2 233355667765544322 1345678999999999999998776
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.31 E-value=0.0017 Score=71.68 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCcccchhHHHHHHHhhhcc-----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 173 NGLVGLNSRIEQIKPLLCME-----------LSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+.++|.+..++.+...+... .......+.|+|.+|+||||+|+++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45889998888888776541 001234677999999999999999999874
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.26 E-value=0.00098 Score=72.03 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=35.3
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.++++|.+..+.++.+.+..-. .....|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4568999999988887765433 2224567999999999999999998654
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.22 E-value=0.0011 Score=72.81 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
...+.+.++|++|+|||+||+++++.....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456788999999999999999999875443
No 230
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.20 E-value=0.00013 Score=73.05 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=52.2
Q ss_pred ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCCcccCCCccccccccCCCcccCc
Q 047103 696 SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLPESLGNLKALEFLSAAGIIKIPR 775 (1095)
Q Consensus 696 ~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~lp~ 775 (1095)
.+|.....-..|+.|++++|.+.. .++. .+.++++|+.|+|++|...+.- . |+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd---~GL~----~L~~~~~L~~L~L~~C~~ItD~--g------L~------------ 104 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMS---IGFD----HMEGLQYVEKIRLCKCHYIEDG--C------LE------------ 104 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCG---GGGG----GGTTCSCCCEEEEESCTTCCHH--H------HH------------
T ss_pred cCCcccCCCceEeEEeCcCCCccH---HHHH----HhcCCCCCCEEEeCCCCccCHH--H------HH------------
Confidence 345433333468888888876443 2222 2456777777877777632210 0 00
Q ss_pred ccCC----CCCCCeeeCCCCC-Ccc-cCcccCCCCCCCEEeccCCCCccc
Q 047103 776 DIGC----LSSLVELDLSRNN-FES-LPSGISHLSRLKWLHLFDCIMLQS 819 (1095)
Q Consensus 776 ~l~~----l~~L~~L~Ls~n~-l~~-lp~~l~~L~~L~~L~L~~c~~l~~ 819 (1095)
.+.. .++|++|+|++|. ++. --..+..+++|++|+|++|+.++.
T Consensus 105 ~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 0111 1357777777763 552 112345567777777777765543
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.20 E-value=0.0018 Score=81.08 Aligned_cols=150 Identities=12% Similarity=0.095 Sum_probs=82.6
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC-----CceEEEEecccccCCCCCH
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF-----EGTCFVADVRRNSGTGGGL 244 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-----~~~~~v~~v~~~~~~~~~l 244 (1095)
...+.+||++..++++...|.... ..-+.++|.+|+||||+|+.+++.+.... ...-++. .+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~---~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~---------~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT---------LDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC---------C--
T ss_pred CCCCCccCchHHHHHHHHHHhCCC---CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE---------ecc
Confidence 345679999999999999987633 23467999999999999999999874321 1111111 001
Q ss_pred HHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHHHhc--
Q 047103 245 EHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVLEKF-- 322 (1095)
Q Consensus 245 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-- 322 (1095)
+..........+...+......++.+|++| ...+..+.+...+. ...-++|.||.........
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000011111222333333567889999 23333344444443 2234666666544311100
Q ss_pred -----CcceEEEccCCChhHHHHHHHHhh
Q 047103 323 -----GVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 323 -----~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.--..+.++.++.++..+++...+
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 011468999999999999998644
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.11 E-value=0.003 Score=69.77 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=38.1
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
++++|....++++.+.+..-. .....|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999988876643 223456799999999999999999864
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.98 E-value=0.00036 Score=75.17 Aligned_cols=68 Identities=29% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCCCCcEEeccCCCCCC--ccccccCCCCCCCEEEccCccccccccccccccCccccCCCCCCEEEecCCCCCCCCC
Q 047103 679 CLPDLETLEMSNCYSLK--SLSTNICKLKSLRSLHLAFCEQLGKEASNIKELPSSIENLEGLRELQLMGCTKLGSLP 753 (1095)
Q Consensus 679 ~l~~L~~L~Ls~~~~l~--~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 753 (1095)
++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. . .+ ..+..+ +|+.|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~---~l-~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R---EL-DKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G---GG-GGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h---hh-hhcccC-CcceEEccCCcCccccC
Confidence 45566666666666554 4445555667777777776665542 1 11 112233 67777777777665554
No 234
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.00024 Score=76.50 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=59.5
Q ss_pred cCCceEEEecCCCCcccc---CccCCCCCCcEEeccCCCCCCccccccCCCC--CCCEEEccCccccccccccccccCcc
Q 047103 657 SGNVVELKLRHTPIEEVP---SSIDCLPDLETLEMSNCYSLKSLSTNICKLK--SLRSLHLAFCEQLGKEASNIKELPSS 731 (1095)
Q Consensus 657 ~~~L~~L~L~~n~i~~lp---~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~--~L~~L~Ls~~~~~~~~~~~i~~lp~~ 731 (1095)
+.+|+.|+|++|.|+.++ ..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|..-.-....
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 346789999999998765 5567899999999999987764 2233444 99999999999877443211111123
Q ss_pred ccCCCCCCEEE
Q 047103 732 IENLEGLRELQ 742 (1095)
Q Consensus 732 l~~l~~L~~L~ 742 (1095)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56678888775
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.96 E-value=0.0045 Score=66.27 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=81.8
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRN 237 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~ 237 (1095)
+....++++|.+..++++.++...-. .-... +.|+|.+|.||||||+.++..... ..+.+. ....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~ 85 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDF 85 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHH
Confidence 33445678998888777766543210 01123 889999999999999999987652 223332 1100
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCC
Q 047103 238 SGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLD 301 (1095)
Q Consensus 238 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~ 301 (1095)
.....+. ..+.+ ...++..-.....++++|+++... .+..+...+.
T Consensus 86 ~~~~~~~--~~~~i----------------~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 86 VEMFVGV--GAARV----------------RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp HHSCTTH--HHHHH----------------HHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHhhH--HHHHH----------------HHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHh
Confidence 0000000 00000 000111112245789999984321 1223332222
Q ss_pred CC--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 302 QF--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 302 ~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+ .....++.||...+++.. ...+..++++..+.++-.+++..++
T Consensus 148 g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 148 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 11 122344556666655322 1345688899999888888886654
No 236
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.94 E-value=0.00016 Score=72.39 Aligned_cols=84 Identities=14% Similarity=0.303 Sum_probs=42.5
Q ss_pred CceEEEecCCCCccc-cCccCCCCCCcEEeccCCCCCCc-cccccCCC----CCCCEEEccCccccccccccccccCccc
Q 047103 659 NVVELKLRHTPIEEV-PSSIDCLPDLETLEMSNCYSLKS-LSTNICKL----KSLRSLHLAFCEQLGKEASNIKELPSSI 732 (1095)
Q Consensus 659 ~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~~~~l~~-lp~~l~~L----~~L~~L~Ls~~~~~~~~~~~i~~lp~~l 732 (1095)
+|++|+++++.|+.. -..+..+++|+.|+|++|..++. --..+..+ ++|++|+|++|...+. .++. .+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~----~L 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGII----AL 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHH----HG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHH----HH
Confidence 466666666665532 12245666666666666654332 11223332 3566666666653331 1221 13
Q ss_pred cCCCCCCEEEecCCCC
Q 047103 733 ENLEGLRELQLMGCTK 748 (1095)
Q Consensus 733 ~~l~~L~~L~L~~~~~ 748 (1095)
.++++|++|+|++|+.
T Consensus 136 ~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GGCTTCCEEEEESCTT
T ss_pred hcCCCCCEEECCCCCC
Confidence 4456666666666653
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.0026 Score=69.20 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=39.0
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccC--------C-CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMEL--------S-DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~--------~-~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+....++++|.+..++++.++...-. + .-.+-+.|+|.+|+||||||+.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34455789999988887776543211 0 0112288999999999999999998765
No 238
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.0014 Score=64.09 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=27.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-..++|+|..|.||||||+.++......=...+|+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357899999999999999999997654211155553
No 239
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.002 Score=70.94 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=87.9
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh---cCCCceEEEEecccccCCCCCHHHHHHHHHH
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS---GGFEGTCFVADVRRNSGTGGGLEHLQKQILS 253 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~---~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~ 253 (1095)
|-++.++.+...+..+ ......++|+.|.||||+|+.+++... ........+. . .....++..+.. +..
T Consensus 1 g~~~~~~~L~~~i~~~---~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~---~~~~~~id~ir~-li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P---EGENIGIDDIRT-IKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C---SSSCBCHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHCC---CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C---CcCCCCHHHHHH-HHH
Confidence 3455666777776553 267888999999999999999987531 1122233332 1 111134444333 443
Q ss_pred HhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCCCCCCEEEEEeCch-HHHHhcCcceEEEc
Q 047103 254 TILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQFGLGSRIIITTRDK-RVLEKFGVKKIYRV 330 (1095)
Q Consensus 254 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~v 330 (1095)
.+.... ..+++-++|+|+++.. ...+.|+..+....+.+++|++|.+. .+...+... .+++
T Consensus 73 ~~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 73 FLNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HHTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred HHhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 332111 1234568889999753 34555655554445677877776544 444444444 8999
Q ss_pred cCCChhHHHHHHHHhh
Q 047103 331 NGLQFDVALEQFCNYA 346 (1095)
Q Consensus 331 ~~L~~~ea~~Lf~~~a 346 (1095)
++++.++..+.+...+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987765
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.014 Score=63.29 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCCCcccchhHHHHHHHhhhcc-----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCME-----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
..+++.|.++.+++|.+.+... -.-... ++|+|++|.||||||++++..... ..+.+. ..+...
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHh
Confidence 3456778888777776643210 001123 899999999999999999987543 223332 111111
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCCCC--C
Q 047103 240 TGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLDQF--G 304 (1095)
Q Consensus 240 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~--~ 304 (1095)
. ......+.+ ..+ ....-.....++++|+++... ....+...+..+ .
T Consensus 83 ~--~~~~~~~~i-~~v---------------f~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 83 M--YVGESERAV-RQV---------------FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp S--TTHHHHHHH-HHH---------------HHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred h--hhhHHHHHH-HHH---------------HHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 1 111111111 000 111112345678888885421 122222222211 1
Q ss_pred CCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 305 LGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 305 ~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
...-++.+|...+++.. ...+..+.++..+.++-.++|..+.
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 23445667776665432 1456788999999999999987654
No 241
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.82 E-value=0.0038 Score=78.17 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=84.6
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEH 246 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~ 246 (1095)
..++|.+..++.+...+.... ......+.++|++|+|||++|+++++.....-...+.+. ..+.... ....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~-~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEK-HSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSS-CCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccc-cccc-
Confidence 568999999988887775432 122347899999999999999999998743323333332 3332221 1100
Q ss_pred HHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh--hHHHHhcCCCC-----------CCCCCEEEEEe
Q 047103 247 LQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG--QLEGLIGGLDQ-----------FGLGSRIIITT 313 (1095)
Q Consensus 247 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~-----------~~~gsrIIiTT 313 (1095)
+......++. ...-.|+||+++... ..+.|...+.. .....+||.||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 1111111222 123388899997542 23333322211 11346888888
Q ss_pred Cc-----hHH----HHh------cCcceEEEccCCChhHHHHHHHHhh
Q 047103 314 RD-----KRV----LEK------FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 314 R~-----~~v----~~~------~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.. ..+ ... ...+.++.+.+++.++-.+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 72 111 111 1234688999999998888886654
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.81 E-value=0.0034 Score=77.58 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=88.5
Q ss_pred CCCCCcccchhHHHHHHHhhhcc---C-------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCME---L-------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~---~-------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...+++.|.+..+++|.+++... . -...+-|.++|++|.|||+||++++++....| +.+ +..+...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v-~~~~l~s 276 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMS 276 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEE-EHHHHHS
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEE-EhHHhhc
Confidence 34467899999999988876431 0 13456788999999999999999998765332 222 2211111
Q ss_pred CCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh-------------hHHHHhcCCCCCC-
Q 047103 240 TGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG-------------QLEGLIGGLDQFG- 304 (1095)
Q Consensus 240 ~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~- 304 (1095)
...+ -....+.+ +.......+.+|++|+++... ....|+..+....
T Consensus 277 k~~gese~~lr~l-------------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 277 KLAGESESNLRKA-------------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp SCTTHHHHHHHHH-------------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred ccchHHHHHHHHH-------------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 1011 11111222 222234557899999986421 1223332222111
Q ss_pred -CCCEEEEEeCchHHHH-----hcCcceEEEccCCChhHHHHHHHHhh
Q 047103 305 -LGSRIIITTRDKRVLE-----KFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 305 -~gsrIIiTTR~~~v~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+-.||.||...+.+. ....+..++++..+.++-.++|..+.
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 2233445555443321 11346789999999999999998775
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.73 E-value=0.014 Score=69.83 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHhhhcc---CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 174 GLVGLNSRIEQIKPLLCME---LSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+++|.+...+.+.+.+... .......+.++|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4789888887776554321 11235689999999999999999999987543
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.71 E-value=0.0075 Score=70.83 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=85.8
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCC---------CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEeccccc
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELS---------DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNS 238 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~ 238 (1095)
+....++++|.+..++++.++...-.. .-.+-+.|+|++|.||||||++++...... .+.+. ..+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHH
Confidence 444567899999888888766532110 112238899999999999999999876422 23332 21111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhc----CCeEEEEecCCCCh----------------hhHHHHhc
Q 047103 239 GTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFR----CMKVLIVLDNVSKV----------------GQLEGLIG 298 (1095)
Q Consensus 239 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~----------------~~l~~l~~ 298 (1095)
....+. ..+. ++..++ ....++++|+++.. ..+..++.
T Consensus 102 ~~~~g~--~~~~--------------------v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 102 EMFVGV--GAAR--------------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp SSCTTH--HHHH--------------------HHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred Hhhhhh--HHHH--------------------HHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 110111 0111 111111 12468899998532 11334443
Q ss_pred CCCCC--CCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 299 GLDQF--GLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 299 ~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
.+..+ ..+..|+.||...+++.. ...+..+.++..+.++-.+++..++
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 33322 223455666766655321 1245688899999888888887654
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.0057 Score=76.72 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=84.9
Q ss_pred CCCCCcccchhHHHHHHHhhhcc----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCME----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSG 239 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~ 239 (1095)
...++++|.+..+++|.+++... .-.....|.|+|.+|+||||||++++......| +.+. ..+...
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~ 276 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMS 276 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhh
Confidence 34467999999999998877540 013345689999999999999999998764333 2222 111111
Q ss_pred CCCC-HHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh----------------hhHHHHhcCCCC
Q 047103 240 TGGG-LEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV----------------GQLEGLIGGLDQ 302 (1095)
Q Consensus 240 ~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~ 302 (1095)
...+ .......+ +.........++++|+++.. .++-.+......
T Consensus 277 ~~~g~~~~~l~~v-------------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 277 KLAGESESNLRKA-------------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp SSTTHHHHHHHHH-------------------HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred hhhhhHHHHHHHH-------------------HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 1011 11111111 22222334678999998421 112223332221
Q ss_pred CCCCCEEEEEeCchHHHHh-----cCcceEEEccCCChhHHHHHHHHhh
Q 047103 303 FGLGSRIIITTRDKRVLEK-----FGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 303 ~~~gsrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
..+-.+|.||...+-+.. ......+.+...+.++..+++..++
T Consensus 338 -~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp -TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred -cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 233456666655432211 1234567788888888888887654
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.34 E-value=0.0097 Score=65.70 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCCCcccch----hHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh-cCCCceEEEE
Q 047103 171 SYNGLVGLN----SRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS-GGFEGTCFVA 232 (1095)
Q Consensus 171 ~~~~~vGr~----~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~-~~F~~~~~v~ 232 (1095)
..+++++.+ ..++.+.+++..........+.|+|.+|+|||+||+++++... .+-..+.|+.
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345566533 2333444555432212246788999999999999999999876 5433445553
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.051 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999998754
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.83 E-value=0.014 Score=73.12 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..++|.+..++.+...+.... +.....+.++|.+|+|||++|+++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 468999999988877765321 12345789999999999999999999873
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.78 E-value=0.021 Score=62.56 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
..+++++|.+|+||||++..++..+..+=..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998765442334444
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.78 E-value=0.021 Score=72.38 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=39.6
Q ss_pred CCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 173 NGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++|.+..++.+...+.... +.....+.|+|.+|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999998888877775421 123468899999999999999999998643
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.67 E-value=0.021 Score=66.80 Aligned_cols=54 Identities=28% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCCCcccchhHHHHHHHhhhccCC--CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMELS--DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~--~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++++|.+..++.+..++..-.. ...+-+.++|++|+|||+||+++++.+...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 347899999998876655533110 223567899999999999999999987643
No 252
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.65 E-value=0.0027 Score=61.46 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=34.3
Q ss_pred CcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 174 GLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+++|.+..++++.+.+..-. ....-|.|+|.+|+|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 58899999998888875432 122346799999999999999998754
No 253
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.59 E-value=0.038 Score=61.11 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=59.6
Q ss_pred cccccchHHHHHHHhhc-CChhHHHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHhhcccccccccCCCCCcccch
Q 047103 101 QTGIFGDAFVKFGQQFR-EKPEMVQKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLKNLEKITISTDSYNGLVGLN 179 (1095)
Q Consensus 101 q~g~~~~~f~~~~~~~~-~~~~~~~~w~~aL~~va~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~ 179 (1095)
-+..|...+.+.....+ -+.+.+++++++|-+. +. ..+.++++++.+.++....... .. =++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----dv-------~~~~~~~~~~~~~~~~~~~~~~----~~--~~~ 76 (320)
T 1zu4_A 14 SAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQT----DM-------GMKMVLKVSNLVRKKTKRDTSF----EN--IKD 76 (320)
T ss_dssp HHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHT----TC-------CHHHHHHHHHHHHHHCCTTCCH----HH--HHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc----CC-------CHHHHHHHHHHHHHHHhhchhH----HH--HHH
Confidence 34455666665544312 2344456666666543 21 2355667777776655110000 00 112
Q ss_pred hHHHHHHHhhhccC-----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 180 SRIEQIKPLLCMEL-----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 180 ~~~~~l~~~L~~~~-----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.-.++|.++|.... ....++|+|+|.+|+||||++..++..+...
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 77 ALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp HHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 22344555553221 1356899999999999999999999877644
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.51 E-value=0.052 Score=62.60 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcccccccc--cCCCCCcccchhHHHHHHHhhhccC------CCCcEEEEEEecCCCcHHHHHHHHHH
Q 047103 148 ALLIDKIVEDVLKNLEKITIS--TDSYNGLVGLNSRIEQIKPLLCMEL------SDTVQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 148 ~~~i~~iv~~v~~~l~~~~~~--~~~~~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
.+.++++++.+.++....... ..+...+ +....+++.++|.... ....++|.++|.||+||||+|..++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 45 LPVVREFINRVKEKAVGHEVNKSLTPGQEF--VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCSSSCTTTTT--HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCChHHHH--HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345666777666554111110 1111111 1234455666654321 13478999999999999999999998
Q ss_pred HHhcC
Q 047103 220 QFSGG 224 (1095)
Q Consensus 220 ~~~~~ 224 (1095)
.++.+
T Consensus 123 ~l~~~ 127 (433)
T 2xxa_A 123 FLREK 127 (433)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87654
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.42 E-value=0.047 Score=60.54 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
....+++|+|..|+||||+++.++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999999999987654
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.38 E-value=0.025 Score=58.03 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=33.0
Q ss_pred chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 178 LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
|++.++++.+.+.........+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344556665555443224568999999999999999999998764
No 257
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.35 E-value=0.011 Score=66.13 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=93.0
Q ss_pred CCCCcccchhHHHHHHHhhhcc--CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHH
Q 047103 171 SYNGLVGLNSRIEQIKPLLCME--LSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQ 248 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~ 248 (1095)
..+.++|.+..++.+...+... .+.....++|+|++|+||||||+.+++.+...|. ... .... .....+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~~---~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPVL---VKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTTC---CSHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chHh---cCHHHHH
Confidence 4467889888888877766543 1133467899999999999999999998754321 111 0000 1111111
Q ss_pred HHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCCh--hhHHHHhcCCCCC--------CC----------CCE
Q 047103 249 KQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKV--GQLEGLIGGLDQF--------GL----------GSR 308 (1095)
Q Consensus 249 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~--------~~----------gsr 308 (1095)
. +...+. ++-++++|++... ...+.+....... ++ .-.
T Consensus 95 -~--------------------~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 -A--------------------ILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -H--------------------HHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -H--------------------HHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1 111112 2335667877542 2233332111000 00 112
Q ss_pred EE-EEeCchHHHHhc--CcceEEEccCCChhHHHHHHHHhhhccCCCCcchHHHHHHHHHHhCCCCcce
Q 047103 309 II-ITTRDKRVLEKF--GVKKIYRVNGLQFDVALEQFCNYAFKENRCPKDLIGHSWRVVRYAKGNPLAL 374 (1095)
Q Consensus 309 II-iTTR~~~v~~~~--~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 374 (1095)
++ .|++...+...+ .....+.+++.+.++-.+++.+.+-.... .--.+.+..|++.+.|.|-.+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHH
Confidence 22 344433332111 23346899999999999999887632211 122455778888888888543
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.20 E-value=0.02 Score=62.69 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=25.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-+++.|+|++|+||||||.+++.. . -..+.|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~--G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L--GGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H--HTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C--CCCEEEEE
Confidence 456789999999999999999876 2 12345665
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.07 E-value=0.11 Score=56.79 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=32.6
Q ss_pred hHHHHHHHhhhccC-----CCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 180 SRIEQIKPLLCMEL-----SDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 180 ~~~~~l~~~L~~~~-----~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.-.++|.+.|.... .....+|+|+|.+|+||||++..++..+...
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34455556554321 1346899999999999999999999877644
No 260
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.03 E-value=0.021 Score=57.84 Aligned_cols=134 Identities=18% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhc--CCCccc----------cCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTIL--SEKLEV----------AGP 265 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~--~~~~~~----------~~~ 265 (1095)
..|-|++-.|.||||.|-.+.-+...+=-.+.++.-+... .. .+-..+.+.+--.+. +..... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777778999999999998865543345555422211 11 233333333310000 000000 001
Q ss_pred CchHHHHhhhcCCeE-EEEecCCCCh-----hhHHHHhcCCCCCCCCCEEEEEeCchHHHHhcCcceEEEccCC
Q 047103 266 NIPQFTKGRFRCMKV-LIVLDNVSKV-----GQLEGLIGGLDQFGLGSRIIITTRDKRVLEKFGVKKIYRVNGL 333 (1095)
Q Consensus 266 ~~~~~l~~~L~~kr~-LlVLDdv~~~-----~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~~L 333 (1095)
.....+++.+.+.+| |||||++... ...+.+...+......-.||+|+|...-.-.--++.+-++...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 123335555655555 9999998432 1122222222222355689999998732111124455566543
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.88 E-value=0.068 Score=59.94 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=66.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceE-EEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTC-FVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~-~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
-.+++|.|+.|.|||||.+.+...+.......+ .+.+..+.... ... ..+.............+.+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~~--------~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SKK--------CLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CSS--------SEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-ccc--------cceeeeeeccccCCHHHHHHHHh
Confidence 359999999999999999999887654333333 33321111000 000 00000001112233455688888
Q ss_pred cCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHHH
Q 047103 276 RCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRVL 319 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 319 (1095)
....=+|++|.+.+.+.++.+.... ..|.-||+||-+.+.+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8888899999999887776654432 2356688888877654
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.84 E-value=0.025 Score=58.38 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998765
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.82 E-value=0.029 Score=60.20 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRF 275 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 275 (1095)
.-.+++|+|+.|.|||||++.+...+...+.+.+++....-.... .... .+ +.......+.......+...|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-~~~~----~~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK----SI---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS----SE---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-CCcc----ee---eeHHHhCCCHHHHHHHHHHHH
Confidence 457899999999999999999998765444555554321100000 0000 00 000000001123344566666
Q ss_pred cCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchHH
Q 047103 276 RCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKRV 318 (1095)
Q Consensus 276 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 318 (1095)
..+.=+|++|...+.+....+.... ..|.-|++||-+..+
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6666788899998766654443322 246678888876654
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.78 E-value=0.014 Score=58.44 Aligned_cols=25 Identities=12% Similarity=0.229 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|.|.|++|.||||+|+++..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.70 E-value=0.019 Score=64.07 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 172 YNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.+.++|.+..++.+...+..+ +-+.++|.+|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 357999999998888877653 257799999999999999999976543
No 266
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.61 E-value=0.12 Score=57.87 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=35.9
Q ss_pred HHHHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 181 RIEQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 181 ~~~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-...+-.+|. -+- ..-+++.|.|.+|+||||||..++......=..++|+.
T Consensus 45 G~~~LD~~Lg~GGi-~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGY-PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSE-ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3445555564 222 34579999999999999999999987654333566775
No 267
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.59 E-value=0.022 Score=70.48 Aligned_cols=154 Identities=15% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCC
Q 047103 171 SYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGT 240 (1095)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~ 240 (1095)
.-.++.|.++..++|.+.+.... -...+-|.++|++|.|||.||+++++..... |+. +.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v~----- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IK----- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-CC-----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-ec-----
Confidence 34577899999999888764321 0223457799999999999999999975432 332 11
Q ss_pred CCCHHHHHHHHHHHhcCCCccccCCCchHHHHhhhcCCeEEEEecCCCChh----------------hHHHHhcCCCCCC
Q 047103 241 GGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGRFRCMKVLIVLDNVSKVG----------------QLEGLIGGLDQFG 304 (1095)
Q Consensus 241 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~ 304 (1095)
. .++++...++ ....+.+.+...-+.....|++|+++..- ....|+..++...
T Consensus 544 ---~----~~l~s~~vGe----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 544 ---G----PELLTMWFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ---H----HHHHTTTCSS----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ---c----chhhccccch----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1 1122221110 00011111222223457899999986421 1334443333222
Q ss_pred CCC-EEEE-EeCchH-----HHHhcCcceEEEccCCChhHHHHHHHHhh
Q 047103 305 LGS-RIII-TTRDKR-----VLEKFGVKKIYRVNGLQFDVALEQFCNYA 346 (1095)
Q Consensus 305 ~gs-rIIi-TTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 346 (1095)
... .+|| ||-..+ +++.-..+..+.++..+.++-.++|..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222 3333 443332 22222356788898888888888887665
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.56 E-value=0.12 Score=59.43 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=28.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
...+|.++|.+|+||||++..++..+..+=..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999999998776542333333
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.54 E-value=0.019 Score=56.91 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 270
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.48 E-value=0.0088 Score=60.89 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=16.6
Q ss_pred CCCCcEEeccCCCCCC-----ccccccCCCCCCCEEEccCccc
Q 047103 680 LPDLETLEMSNCYSLK-----SLSTNICKLKSLRSLHLAFCEQ 717 (1095)
Q Consensus 680 l~~L~~L~Ls~~~~l~-----~lp~~l~~L~~L~~L~Ls~~~~ 717 (1095)
-+.|+.|+|++|+.++ .+-..+..-+.|+.|+|++|.+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 3455555555432222 1223333444555555555443
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.41 E-value=0.021 Score=58.55 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|.|+|+.|.||||+|+.++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.39 E-value=0.031 Score=62.04 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=34.7
Q ss_pred ccchhHHHHHHHhhhccC-CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 176 VGLNSRIEQIKPLLCMEL-SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~~~-~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
|+.+...+++.+.+...- ......|.|+|+.|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 344555555555553221 14567799999999999999999999765544
No 273
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.34 E-value=0.02 Score=59.75 Aligned_cols=110 Identities=18% Similarity=0.003 Sum_probs=57.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCcc--c-cCCCchHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLE--V-AGPNIPQFTKG 273 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~--~-~~~~~~~~l~~ 273 (1095)
-.++.|+|..|.||||+|..+..+...+-..+..+.-.... . ...++++.++..... . ...++.+.+++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-------r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-------R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-------G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-------h-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 46889999999999999999988876554444444311100 0 001222223221111 1 11112222333
Q ss_pred hhcCCeE-EEEecCCCC--hhhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 274 RFRCMKV-LIVLDNVSK--VGQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 274 ~L~~kr~-LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
.+.+.++ +||+|.+.. .++++.+.. +.. .|-.||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 3333444 999999854 234444322 111 2678999988543
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.33 E-value=0.16 Score=58.80 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=28.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999876543 3455553
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.32 E-value=0.021 Score=57.62 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+.|.|.|+.|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 276
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.31 E-value=0.028 Score=63.54 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHhhhc------------cCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 175 LVGLNSRIEQIKPLLCM------------ELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 175 ~vGr~~~~~~l~~~L~~------------~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
++|.+..++.+...+.. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 67777777777666620 0001345688999999999999999999864
No 277
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.22 E-value=0.12 Score=59.17 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++|.++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999877554
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.21 E-value=0.044 Score=59.74 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
....+|+|.|..|.||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999887653
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.18 E-value=0.022 Score=56.58 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 54
No 280
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.16 E-value=0.12 Score=56.71 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...+++|+|.+|+||||+++.++..+... ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45699999999999999999999876543 3445553
No 281
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.05 E-value=0.039 Score=64.77 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+.++|.+..++.+...+..+ .-|.|+|.+|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999998888777653 2577999999999999999998653
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.01 E-value=0.03 Score=59.79 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999988754
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.91 E-value=0.053 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 284
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.87 E-value=0.056 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|+.|.||||||+.+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999999875
No 285
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.86 E-value=0.46 Score=51.35 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=32.4
Q ss_pred ccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeec
Q 047103 40 ISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVS 94 (1095)
Q Consensus 40 i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ 94 (1095)
.-.++.+.++++.+.|.|+.-.-..+..+ .++.+++ .+..++-|+-++|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~D 61 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKAD 61 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcc
Confidence 34578899999999999988766666555 2455554 2334555555555
No 286
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.83 E-value=0.031 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+|+|.|+.|.||||+|+.+..++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998764
No 287
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.80 E-value=0.14 Score=52.82 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=26.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-.+++|+|.+|+||||||..++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 45899999999999999999987 2 224566665
No 288
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.75 E-value=0.2 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
...+++|+|..|+||||+++.++..+... ...+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 45799999999999999999999876543 344444
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.74 E-value=0.034 Score=56.24 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.-.+++|.|+.|.|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999875
No 290
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.70 E-value=0.054 Score=62.43 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++|+|+|.+|+||||+|..++..+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999876543
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.64 E-value=0.037 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.63 E-value=0.028 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|.|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.61 E-value=0.047 Score=55.24 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|.|.|++|.||||+|+.+..++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 294
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.57 E-value=0.021 Score=57.82 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.++.|+|..|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999977776653
No 295
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.55 E-value=0.097 Score=60.31 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCC-CceEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGF-EGTCFV 231 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v 231 (1095)
.++|+|.+|+||||||..+......++ +.+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 578999999999999999998765444 344444
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.52 E-value=0.028 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.++|.|.|++|.||||+|+.+..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 297
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.51 E-value=0.036 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 298
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.49 E-value=0.068 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...+|.|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998753
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.44 E-value=0.024 Score=57.25 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
|.|.|.|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999988765544
No 300
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.39 E-value=0.019 Score=64.01 Aligned_cols=27 Identities=22% Similarity=-0.033 Sum_probs=23.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
-..++|+|.+|.|||||++.+.+.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 357899999999999999999887643
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.38 E-value=0.071 Score=56.45 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.....|+|.|++|+||||+|+.+..++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.33 E-value=0.067 Score=52.99 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..++++|.|..|.|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46789999999999999999999987654
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.32 E-value=0.046 Score=55.14 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.31 E-value=0.059 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+|+|.|+.|.||||||+.+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.31 E-value=0.05 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+|+|.|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.31 E-value=0.057 Score=61.31 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+.++|++|+||||+|+++++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999764
No 307
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.27 E-value=0.039 Score=55.45 Aligned_cols=25 Identities=12% Similarity=0.426 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.26 E-value=0.042 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 309
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.25 E-value=0.21 Score=54.64 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
...+++|+|..|+||||+++.++..+... ...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45799999999999999999999876543 344444
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.24 E-value=0.04 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+|+|.|+.|.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.22 E-value=0.049 Score=58.15 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|.|.|+.|.||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.16 E-value=0.24 Score=56.77 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...+|+|+|.+|+||||++..++..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999887654
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.06 E-value=0.048 Score=55.30 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|.|+.|.||||+|+.+..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 314
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.05 E-value=0.044 Score=61.40 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=36.8
Q ss_pred ccCCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 168 STDSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
++...++++|.+..++.+...+.... ..-+.|+|.+|+|||+||+++++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~---~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG---GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC---CceEEEECCCCccHHHHHHHHHHhCc
Confidence 33455679999886665444333222 22388999999999999999998754
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.05 E-value=0.037 Score=62.71 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=62.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceE-EEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTC-FVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~-~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
.-.+++|+|..|.||||+++.+...+.......+ ++.+-.+.... ... .-+.+.....+.......++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-~~~--------~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HKK--------SIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-CSS--------SEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-cCc--------eEEEeeecCCCHHHHHHHHHHH
Confidence 3568999999999999999999987654434444 33311110000 000 0000000001122334567777
Q ss_pred hcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 275 FRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
|....=+|++|.+.+.+.+....... ..|.-|+.|+-...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77777789999998777655443332 34556777776554
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.99 E-value=0.06 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..+|+|.|+.|.||||+|+.+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998865
No 317
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.97 E-value=0.99 Score=50.16 Aligned_cols=154 Identities=10% Similarity=-0.049 Sum_probs=93.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh-cCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccccCCCchHHHHhh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS-GGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEVAGPNIPQFTKGR 274 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~-~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 274 (1095)
-.++..++|..|.||++.|+.+...+. ..|+....+. +. .. .++..+...+-.. -
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~~~~-------------------p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PN-TDWNAIFSLCQAM-------------------S 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TT-CCHHHHHHHHHHH-------------------H
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CC-CCHHHHHHHhcCc-------------------C
Confidence 356888999999999999999998764 3454322121 21 11 4555544433211 1
Q ss_pred hcCCeEEEEecCCCC---hhhHHHHhcCCCCCCCCCEEEEEeCc-------hHHHHhc-CcceEEEccCCChhHHHHHHH
Q 047103 275 FRCMKVLIVLDNVSK---VGQLEGLIGGLDQFGLGSRIIITTRD-------KRVLEKF-GVKKIYRVNGLQFDVALEQFC 343 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~ 343 (1095)
+.+.+-++|+|+++. ...++.|...+....+++.+|++|.. +.+...+ .....++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 234456778898865 34556665555444567788877643 2444443 334688999999999888887
Q ss_pred HhhhccCCCCcchHHHHHHHHHHhCCCCccee
Q 047103 344 NYAFKENRCPKDLIGHSWRVVRYAKGNPLALK 375 (1095)
Q Consensus 344 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 375 (1095)
..+-..+. .--.+.+..+++.++|...++.
T Consensus 153 ~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~ 182 (343)
T 1jr3_D 153 ARAKQLNL--ELDDAANQVLCYCYEGNLLALA 182 (343)
T ss_dssp HHHHHTTC--EECHHHHHHHHHSSTTCHHHHH
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhchHHHHHH
Confidence 76532221 1223556677788888766543
No 318
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.92 E-value=0.26 Score=53.70 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+++|+|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998765
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.92 E-value=0.059 Score=53.20 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.|+|.|+.|.||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.92 E-value=0.094 Score=53.82 Aligned_cols=28 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
.+|.|.|+.|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876443
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.89 E-value=0.065 Score=54.69 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999999875
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.84 E-value=0.066 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|+|.|+.|.||||+|+.++.++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998864
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.84 E-value=0.059 Score=54.48 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=24.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
.+++|.|+.|.|||||++.+... ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999763 33445553
No 324
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.83 E-value=0.11 Score=60.97 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...++|.|+|.+|+||||++.+++..+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 347899999999999999999999876643
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.78 E-value=0.061 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..|+|.|+.|.||||+|+.+..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998753
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.78 E-value=0.059 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
...|+|.|+.|.||||+|+.+..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999886
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.76 E-value=0.059 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|+|.|++|.||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.75 E-value=0.06 Score=56.11 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.71 E-value=0.043 Score=55.49 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=24.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
++++|.|+.|.|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 330
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.68 E-value=0.091 Score=54.10 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=24.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999987544
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.67 E-value=0.072 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|.|+.|.||||+|+.+..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.66 E-value=0.067 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|.|+.|.||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.64 E-value=0.062 Score=55.03 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
+|+|.|+.|.||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 334
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.62 E-value=0.1 Score=57.46 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+..++|+|.|-|||||||.|..++.-++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 468999999999999999999888776543
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.60 E-value=0.059 Score=55.56 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.-.+|+|.|+.|+|||||++.+......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999987643
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.60 E-value=0.052 Score=53.83 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|.|.|+.|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 337
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.59 E-value=0.045 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=18.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|.|.|+.|.||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988654
No 338
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.54 E-value=0.05 Score=55.90 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..++|+|.|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999998764
No 339
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.51 E-value=0.15 Score=56.59 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=59.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc---cCCCchHHHHhh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV---AGPNIPQFTKGR 274 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~---~~~~~~~~l~~~ 274 (1095)
.+++|+|..|.|||||++.+...+.. -...+.+....+.... .. ...... .+......+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HH------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SC------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cc------------hhEEEEEeCCChhHHHHHHHH
Confidence 47999999999999999999876543 3566666543321100 00 000000 233444567777
Q ss_pred hcCCeEEEEecCCCChhhHHHHhcCCCCCCCCCEEEEEeCchH
Q 047103 275 FRCMKVLIVLDNVSKVGQLEGLIGGLDQFGLGSRIIITTRDKR 317 (1095)
Q Consensus 275 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 317 (1095)
|..+.=+|+||.+.+.+.++.+. .+.. + +.-+|+||-...
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~-~~~~-g-~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYN-VLCS-G-HKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHH-HHHT-T-CCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHHH-HHhc-C-CCEEEEEEcccH
Confidence 88778889999998865555443 2221 2 112566665443
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.18 Score=52.15 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=32.9
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+.+...+++...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~---~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE---SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH---HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc---cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334445555555543 347899999999999999999998876544
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.48 E-value=0.071 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|.|.|++|.||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.47 E-value=0.075 Score=54.60 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
....+|+|.|+.|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999998774
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.43 E-value=0.087 Score=54.21 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 344
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.43 E-value=0.066 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.+++|.|+.|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.34 E-value=0.075 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.536 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|+|.|+.|.||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 346
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.30 E-value=0.14 Score=48.29 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCCCeeeCCCCCCcccCcc-cCCCCCCCEEeccCCCC
Q 047103 781 SSLVELDLSRNNFESLPSG-ISHLSRLKWLHLFDCIM 816 (1095)
Q Consensus 781 ~~L~~L~Ls~n~l~~lp~~-l~~L~~L~~L~L~~c~~ 816 (1095)
++|+.|+|++|+|+.+|.. +..+++|+.|+|.+|+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4799999999999999874 57899999999999874
No 347
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.27 E-value=0.22 Score=51.61 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 182 IEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 182 ~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.+.+...+.. .....|.|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~---~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK---HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH---TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 347889999999999999999998865433
No 348
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.23 E-value=0.096 Score=53.30 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=32.1
Q ss_pred chhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 178 LNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
...-+..+..++... .+.+.+.|+|++|.||||+|.++++.+.+
T Consensus 41 ~~~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334466666666532 23346899999999999999999998754
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.21 E-value=0.072 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+|+|.|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 350
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.21 E-value=0.3 Score=53.77 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=44.5
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
|...-...+..++ .+- ..-.++.|.|.+|+||||+|..++.....+-..++|++- . ....++...+++.
T Consensus 50 ~i~TG~~~LD~~l-gGl-~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------E-MGKKENIKRLIVT 118 (315)
T ss_dssp SBCCSCHHHHHHH-SSB-CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------S-SCHHHHHHHHHHH
T ss_pred CccCChHHHHhhc-CCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------C-CCHHHHHHHHHHH
Confidence 3444444455555 222 344688899999999999999998776543356777751 1 3456677766654
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.17 E-value=0.12 Score=56.88 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHhhhc-cCCCCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 176 VGLNSRIEQIKPLLCM-ELSDTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 176 vGr~~~~~~l~~~L~~-~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|-...+..+...+.. .......+|||.|..|.||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444444443333 2235678999999999999999999887654
No 352
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.16 E-value=0.2 Score=47.33 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=31.4
Q ss_pred EEEecCCCCc--cccCccCCCCCCcEEeccCCCCCCccccccCCCCCCCEEEccCccc
Q 047103 662 ELKLRHTPIE--EVPSSIDCLPDLETLEMSNCYSLKSLSTNICKLKSLRSLHLAFCEQ 717 (1095)
Q Consensus 662 ~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~L~~L~~L~Ls~~~~ 717 (1095)
.++.+++.++ .+|..+ .++|+.|+|++|.+...-+..|..+++|+.|+|++|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566666666 666543 23566666666655444444455666666666666544
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.12 E-value=0.088 Score=54.14 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999986543
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.11 E-value=0.081 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|||.|+.|.||||+|+.+...+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998863
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.11 E-value=0.08 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|.|+.|.|||||++.++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997753
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.10 E-value=0.069 Score=54.38 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.-++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998654
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.09 E-value=0.087 Score=56.43 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.08 E-value=0.078 Score=54.37 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 359
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.04 E-value=0.1 Score=59.89 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCcccchhHHHHHHHhhhcc-----------CCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 173 NGLVGLNSRIEQIKPLLCME-----------LSDTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+.++|.+..++.+...+... .....+-|.++|++|+||||+|++++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45778777777776554221 00124568899999999999999999986543
No 360
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.98 E-value=0.1 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.+.++|.|.|++|.||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999999875
No 361
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.91 E-value=0.07 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIF 218 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~ 218 (1095)
-.+++|+|..|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 362
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.91 E-value=0.26 Score=55.33 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.++...+.... ....+|+|+|.+|+|||||+..+...+..
T Consensus 66 ~~~~~~~~~~~-~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 66 QQLLLRLLPDS-GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHGGGC-CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhHhhc-CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444443323 56789999999999999999999887644
No 363
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.82 E-value=0.28 Score=53.34 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=27.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCC--CceEEEE
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGF--EGTCFVA 232 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F--~~~~~v~ 232 (1095)
++-|+|.+|+||||||..++.....++ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999998887765442 3567775
No 364
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.77 E-value=0.23 Score=55.49 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 181 RIEQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 181 ~~~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-...+-.+|. .+- ..-+++.|+|.+|+||||||..++......=..++|+.
T Consensus 45 G~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3344555554 221 33468999999999999999999877654434567775
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.77 E-value=0.08 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|.|++|.||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.76 E-value=0.13 Score=55.80 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|.|.|++|.||||+|+.+..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.75 E-value=0.081 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-.+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998754
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.72 E-value=0.075 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.66 E-value=0.062 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
+|+|.|..|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.64 E-value=0.1 Score=52.91 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.|+|.|+.|+||||+|+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998743
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.61 E-value=0.1 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.55 E-value=0.11 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999998764
No 373
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.53 E-value=0.059 Score=54.74 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=63.2
Q ss_pred CCceEEEecCC-CCc-----cccCccCCCCCCcEEeccCCCCCC----ccccccCCCCCCCEEEccCccccccccccccc
Q 047103 658 GNVVELKLRHT-PIE-----EVPSSIDCLPDLETLEMSNCYSLK----SLSTNICKLKSLRSLHLAFCEQLGKEASNIKE 727 (1095)
Q Consensus 658 ~~L~~L~L~~n-~i~-----~lp~~i~~l~~L~~L~Ls~~~~l~----~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~i~~ 727 (1095)
..|++|+|+++ .|. .+-..+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|.+.. .+...
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~---~Ga~a 117 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP---ELLAR 117 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH---HHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH---HHHHH
Confidence 45788999885 776 245556777899999999988754 334445566889999999998765 44445
Q ss_pred cCccccCCCCCCEEEecCCC
Q 047103 728 LPSSIENLEGLRELQLMGCT 747 (1095)
Q Consensus 728 lp~~l~~l~~L~~L~L~~~~ 747 (1095)
+-..+..-+.|+.|+|++|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 55566666779999998653
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.48 E-value=0.098 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
...|.|.|++|+||||+|+.+..++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999864
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.48 E-value=0.082 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.149 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|.|++|.||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.47 E-value=0.13 Score=54.67 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|.|.|++|.||||+|+.+..++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999998754
No 377
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.45 E-value=0.32 Score=56.14 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
..++|.|.+|+|||+|+..+.+.+.. +-+.++|+. +.+. ......+.+++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER---~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGER---TREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC---SHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccC---cHHHHHHHHhhhcc
Confidence 46899999999999999999998643 345666663 4332 23455666666654
No 378
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.42 E-value=0.077 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.483 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999988654
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.32 E-value=0.12 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+|.|.|+.|.||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998764
No 380
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.27 E-value=0.3 Score=52.22 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=30.9
Q ss_pred ccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeec
Q 047103 40 ISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVS 94 (1095)
Q Consensus 40 i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ 94 (1095)
.-.++.+.++.+.+.|.|++-.-..+..+. ++. ++ +..++-|+-++|
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll------~k~~iivlNK~D 57 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS------RKETIILLNKVD 57 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT------TSEEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc------CCCcEEEEECcc
Confidence 345889999999999999987666665542 122 22 344555655555
No 381
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.26 E-value=0.12 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+|+|.|+.|.||||+|+.+..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.20 E-value=0.11 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 383
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.19 E-value=0.25 Score=56.70 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=36.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc-CCCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG-GFEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~-~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
..++|.|.+|+|||||+..+.+.+.. +-+.++|+. +.+.. ..+..+.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER~---rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERT---REGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCCH---HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCcc---hHHHHHHHHhhhc
Confidence 56799999999999999999987643 335555553 43322 3355666666554
No 384
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.17 E-value=0.12 Score=56.81 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|||.|..|.||||||+.+..-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999998654
No 385
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.12 E-value=0.12 Score=62.70 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCCCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
...+.++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++..+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34467999998888888777543 4789999999999999999999765443
No 386
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.10 E-value=0.63 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
.+.|.|.+|.||||++.++...+...-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998765443
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.98 E-value=0.13 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
....+|+|.|+.|.||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4468999999999999999999983
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.96 E-value=0.15 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|||.|..|.||||||+.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 389
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.93 E-value=0.26 Score=51.15 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc------CCCceEEEE
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG------GFEGTCFVA 232 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~------~F~~~~~v~ 232 (1095)
.-.+++|+|..|.|||||++.++..... .-...+|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 3479999999999999999999875432 123466665
No 390
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.92 E-value=0.12 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-.+++|+|+.|.|||||++.+..-+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999988653
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.92 E-value=0.13 Score=57.00 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 392
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.90 E-value=0.29 Score=54.84 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=37.0
Q ss_pred cchhHHHHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 177 GLNSRIEQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
+...-...|-.+|. .+- ..-+++.|.|.+|+||||||..++......=..++|+.
T Consensus 43 ~i~TG~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EECCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33334445555554 221 23468999999999999999999887654434677776
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.80 E-value=0.14 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.80 E-value=0.15 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.65 E-value=0.21 Score=54.82 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|||.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999988664
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.60 E-value=0.15 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|.|.|+.|.||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.59 E-value=0.13 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.+|+|.|+.|.||||+|+.+..++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.56 E-value=0.14 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..+|+|.|++|.||||+|+.+..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 399
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.55 E-value=0.4 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.114 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
..++|+|.+|+|||||+..+.+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 46799999999999999999997653
No 400
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.49 E-value=0.12 Score=53.80 Aligned_cols=25 Identities=36% Similarity=0.568 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998865
No 401
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.47 E-value=2.2 Score=49.20 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
+...|+|+|.+|+|||||...+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 402
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.43 E-value=0.16 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.-.+++|.|..|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999865
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.42 E-value=0.2 Score=52.11 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-.+++|.|.+|.|||||++.++......=..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999976543223455553
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.41 E-value=0.23 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=23.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.41 E-value=0.15 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.|.|.|+.|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 406
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.38 E-value=0.86 Score=51.30 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=71.5
Q ss_pred ccHHHHhhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeeccccccccccccchHHHHHHHhhcCC
Q 047103 40 ISPALLNAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVSPFSVRHQTGIFGDAFVKFGQQFREK 119 (1095)
Q Consensus 40 i~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ps~vr~q~g~~~~~f~~~~~~~~~~ 119 (1095)
+-..+....+.+.+.|.|+.-.-..+.| ..|+.+++. +..++-|+=++|--+ . ...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~s~-~~~l~~~l~-----~~piilV~NK~DLl~--~----------------~~~ 116 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNGSF-IPGLPRFAA-----DNPILLVGNKADLLP--R----------------SVK 116 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGGGC-CSSHHHHCT-----TSCEEEEEECGGGSC--T----------------TCC
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCCch-hhHHHHHhC-----CCCEEEEEEChhcCC--C----------------ccC
Confidence 3333444447888999888866666777 556666643 344666666665211 0 012
Q ss_pred hhHHHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHhhcccccccccCCCCCcccchhHHHHHHHhhhccCCCCcEE
Q 047103 120 PEMVQKWRDELTETSHLAGHESTKFRNDALLIDKIVEDVLKNLEKITISTDSYNGLVGLNSRIEQIKPLLCMELSDTVQI 199 (1095)
Q Consensus 120 ~~~~~~w~~aL~~va~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v 199 (1095)
.+++++|.... +...|+ .. ..........-.|.++-++.+.+++.. +.
T Consensus 117 ~~~~~~~l~~~---~~~~g~-~~----------------------~~v~~iSA~~g~gi~~L~~~I~~~~~~------~~ 164 (369)
T 3ec1_A 117 YPKLLRWMRRM---AEELGL-CP----------------------VDVCLVSAAKGIGMAKVMEAINRYREG------GD 164 (369)
T ss_dssp HHHHHHHHHHH---HHTTTC-CC----------------------SEEEECBTTTTBTHHHHHHHHHHHHTT------SC
T ss_pred HHHHHHHHHHH---HHHcCC-Cc----------------------ccEEEEECCCCCCHHHHHHHHHhhccc------Cc
Confidence 24455564432 222233 00 011112233445667666777665521 35
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 047103 200 VGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 200 i~I~GmgGiGKTTLA~~v~~~ 220 (1095)
|+++|.+|+|||||...+...
T Consensus 165 i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHhh
Confidence 789999999999999999986
No 407
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.30 E-value=0.52 Score=52.21 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=45.7
Q ss_pred cccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 175 LVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
+.|...-...|..++. +- ..-.++.|.|.+|+||||+|..++..+..+=..++|++ -. -...++...+++.
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl-~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lE-ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GF-NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LE-MSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SB-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SS-SCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CC-CCHHHHHHHHHHH
Confidence 3444444455555553 22 33458889999999999999999887654334556664 11 3456777777665
Q ss_pred h
Q 047103 255 I 255 (1095)
Q Consensus 255 l 255 (1095)
.
T Consensus 97 ~ 97 (338)
T 4a1f_A 97 L 97 (338)
T ss_dssp H
T ss_pred h
Confidence 3
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.28 E-value=0.15 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|.|+.|.||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 409
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.22 E-value=0.14 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998653
No 410
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.17 E-value=0.63 Score=55.72 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
+++.|.|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999998876544
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.16 E-value=0.1 Score=51.87 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999987654
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.15 E-value=0.21 Score=52.62 Aligned_cols=36 Identities=28% Similarity=0.176 Sum_probs=25.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh-cCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS-GGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~-~~F~~~~~v~ 232 (1095)
-.+++|.|+.|.|||||++.++.... ..-....++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46899999999999999999885322 2223455553
No 413
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.13 E-value=1.5 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIF 218 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~ 218 (1095)
.+++|.|..|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999998
No 414
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.09 E-value=0.26 Score=51.81 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=27.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
-.++.|.|.+|+||||||..++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358899999999999999988776544434566765
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.96 E-value=0.27 Score=51.58 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=27.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc------CCCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG------GFEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~------~F~~~~~v~ 232 (1095)
-.+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 458999999999999999999885322 134677775
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.85 E-value=0.17 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999874
No 417
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.81 E-value=0.17 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999998754
No 418
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.78 E-value=0.9 Score=52.60 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=43.1
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcC-CCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGG-FEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
|...-...+..++ .+- ..-.++.|.|.+|+||||+|..++..+..+ =..++|++- . ....++...++..
T Consensus 182 ~i~tG~~~LD~~l-gGl-~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E-~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTL-GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------E-MPAAQLTLRMMCS 251 (444)
T ss_dssp -CCCSCHHHHHHH-CCC-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------S-SCHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------C-CCHHHHHHHHHHH
Confidence 3333334444444 222 334588999999999999999999876543 235666641 1 3456777776654
No 419
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.75 E-value=0.24 Score=55.81 Aligned_cols=28 Identities=25% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
..-.+++|+|+.|.|||||++.++....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456999999999999999999998643
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.74 E-value=0.32 Score=51.74 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....++.+.|.||+||||++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999998766
No 421
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.65 E-value=0.33 Score=51.95 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
++|+|.|-||+||||+|..++..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999887644
No 422
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.64 E-value=0.3 Score=53.50 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=25.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...++|+|+|-||+||||+|..++..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 457899999999999999999999877654
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.47 E-value=0.53 Score=62.63 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHHhcCCCccc------cCCCch
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILSTILSEKLEV------AGPNIP 268 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~l~~~~~~~------~~~~~~ 268 (1095)
..-++|-|+|+.|.||||||.++.......=..++|+. .+...+... +..++..-.+. .++...
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-----~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l 1498 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-----AEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL 1498 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----TTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-----cCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHH
Confidence 34579999999999999999999987766667788885 221122222 44444332221 122233
Q ss_pred HHHHhhhcCC-eEEEEecCCC
Q 047103 269 QFTKGRFRCM-KVLIVLDNVS 288 (1095)
Q Consensus 269 ~~l~~~L~~k-r~LlVLDdv~ 288 (1095)
..+...++.. --+||+|-|.
T Consensus 1499 ~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1499 EICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHHcCCCCEEEEccHH
Confidence 3344455433 4488899883
No 424
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.41 E-value=0.65 Score=50.70 Aligned_cols=47 Identities=23% Similarity=0.133 Sum_probs=30.5
Q ss_pred hhccCceEEEEEecCCccchhhhHHHHHHHHhccccCCCeEEeEEeeec
Q 047103 46 NAIEGSKISVIIFSKGYASSKWCLNELVKILDCKKANDQIVIPVFYNVS 94 (1095)
Q Consensus 46 ~ai~~s~~~ivv~S~~ya~s~wcl~El~~i~~~~~~~~~~v~pvfy~v~ 94 (1095)
.++......++|++-+...... +.+.+.+...+..+..++-|+-++|
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~--~~i~r~L~~~~~~~~~~vivlnK~D 128 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFST--ALLDRFLVLVEANDIQPIICITKMD 128 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCH--HHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred HHHHhCCEEEEEEeCCCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCc
Confidence 4789999999999988543332 2455555443445566666766665
No 425
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.39 E-value=0.13 Score=56.63 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999864
No 426
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.38 E-value=1.4 Score=51.14 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=35.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcCC-CceEEEEecccccCCCCCHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGGF-EGTCFVADVRRNSGTGGGLEHLQKQILS 253 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F-~~~~~v~~v~~~~~~~~~l~~l~~~ll~ 253 (1095)
.-.++.|.|.+|+||||||..++..+...- ..++|+.- . ....++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~------E-~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL------E-MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES------S-SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------C-CCHHHHHHHHHH
Confidence 345889999999999999999998765432 35666641 1 234566666554
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.25 E-value=0.32 Score=53.01 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCC-ceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFE-GTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~-~~~~v~ 232 (1095)
-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458999999999999999999987654422 355553
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.23 E-value=0.22 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999874
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.25 Score=49.69 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999998764
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.03 E-value=0.13 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 431
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.01 E-value=0.23 Score=56.77 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=49.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcCCC----ceEEEEecccccCCCCCHHHHHHHHHHH--hcCCCccc---cCCCch-
Q 047103 199 IVGIWGMGGIGKITLATAIFNQFSGGFE----GTCFVADVRRNSGTGGGLEHLQKQILST--ILSEKLEV---AGPNIP- 268 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~~~~F~----~~~~v~~v~~~~~~~~~l~~l~~~ll~~--l~~~~~~~---~~~~~~- 268 (1095)
.++|.|..|+|||||+..+++....+-+ .++|+. +.+.. ..+..+.+++... +.....-. +.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4689999999999999999987554323 444443 43322 2345555555443 11110100 111010
Q ss_pred -------HHHHhhhc---CCeEEEEecCCCCh
Q 047103 269 -------QFTKGRFR---CMKVLIVLDNVSKV 290 (1095)
Q Consensus 269 -------~~l~~~L~---~kr~LlVLDdv~~~ 290 (1095)
-.+.++++ ++.+|+++||+...
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11234443 68999999999643
No 432
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.01 E-value=0.34 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876643
No 433
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.97 E-value=0.14 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=16.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHH-HHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIF-NQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~-~~~ 221 (1095)
-.+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 654
No 434
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.96 E-value=0.21 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.++|.|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999998864
No 435
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.87 E-value=0.39 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG 224 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~ 224 (1095)
.++|+|.|-||+||||+|..++..++.+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 4688889999999999999999877643
No 436
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.85 E-value=0.81 Score=52.88 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=41.7
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCHHHHHHHHHHH
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVADVRRNSGTGGGLEHLQKQILST 254 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~~v~~~~~~~~~l~~l~~~ll~~ 254 (1095)
|...-...+-.++. +- ..-.++.|.|.+|+||||+|..++..+..+=..++|++ -+ -...++...+++.
T Consensus 179 gi~TG~~~LD~~lg-Gl-~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS--lE-----ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS--LE-----MGKKENIKRLIVT 247 (444)
T ss_dssp SBCCSCHHHHHHHS-SB-CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC--SS-----SCTTHHHHHHHHH
T ss_pred CcCCCcHHHHhhcC-CC-CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE--CC-----CCHHHHHHHHHHH
Confidence 33333344444442 22 33458889999999999999999887654423566664 12 2334566665554
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.83 E-value=0.23 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 438
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.80 E-value=0.65 Score=52.10 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=36.1
Q ss_pred chhHHHHHHHhhh-ccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 178 LNSRIEQIKPLLC-MELSDTVQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 178 r~~~~~~l~~~L~-~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
...-...|-.+|. .+- ..-+++.|.|.+|+||||||..++......=..++|+.
T Consensus 55 i~TG~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp ECCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCCCHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3333445555554 111 23457889999999999999998887654434677876
No 439
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.78 E-value=0.19 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 440
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.77 E-value=0.38 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
-.+++|+|.+|.||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999876543
No 441
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.68 E-value=1.3 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|..|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 37899999999999999998753
No 442
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.67 E-value=0.22 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.. .+++|+|..|.|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999864
No 443
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.65 E-value=0.18 Score=51.84 Aligned_cols=23 Identities=43% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|..|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998864
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.58 E-value=0.25 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+|+|.|+.|.||||+|+.+..++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999988653
No 445
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.49 E-value=0.19 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|+.|.|||||++.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998864
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.26 E-value=0.3 Score=51.06 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.-.+|.|.|+.|.||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.26 E-value=0.24 Score=61.92 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=42.2
Q ss_pred CCCCCcccchhHHHHHHHhhhccC----------CCCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 170 DSYNGLVGLNSRIEQIKPLLCMEL----------SDTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
....+++|.+...+.+.+.+.... -...+.+.++|++|+||||||++++......|
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344678999999999988775321 02235688999999999999999999875443
No 448
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.12 E-value=0.69 Score=51.50 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
....+|+|+|.+|.|||||+..+...+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 55789999999999999999999876543
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.11 E-value=0.29 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
...|.|.|..|+||||+|+.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 450
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.03 E-value=0.45 Score=48.74 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=25.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEG 227 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~ 227 (1095)
+.|.|-|.-|+||||+++.+++++...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 578999999999999999999998765543
No 451
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.01 E-value=0.42 Score=49.43 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcC-CCc
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGG-FEG 227 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~-F~~ 227 (1095)
-.|.+.|.||+||||+|..++.....+ ++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 347789999999999999988876543 443
No 452
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.95 E-value=0.3 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.93 E-value=0.22 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 454
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.93 E-value=0.4 Score=56.14 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=31.5
Q ss_pred cchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 177 GLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
.+.+..+.+.+...... ....+|.+.|+.|.||||+|++++.++..
T Consensus 376 ~rpeV~~vLr~~~~~~~-~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRP-KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGG-GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhccccc-ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34444444444332111 34578999999999999999999999763
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.88 E-value=0.26 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 456
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.85 E-value=3 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
+...-|+|+|.+|+|||||..++...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988753
No 457
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.83 E-value=0.3 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998874
No 458
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=87.70 E-value=1.8 Score=48.61 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCcccchhHHHHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 173 NGLVGLNSRIEQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..-.|.++-++.|.++... ..|+++|.+|+|||||...+..+.
T Consensus 142 ~~g~gi~~L~~~l~~~~~~------~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 142 AKGQGIAELADAIEYYRGG------KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTCTTHHHHHHHHHHHHTT------SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHhhhhhhccc------ceEEEecCCCCChhHHHHHHHhhh
Confidence 3445666666666654421 357899999999999999999864
No 459
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.66 E-value=0.23 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|+.|.|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998863
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.65 E-value=0.23 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.338 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.-.+++|+|..|.|||||++.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998864
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.55 E-value=0.27 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 462
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.53 E-value=0.33 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|.|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999865
No 463
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.51 E-value=0.24 Score=52.20 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.43 E-value=0.35 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 465
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.42 E-value=0.24 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998863
No 466
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.36 E-value=0.46 Score=50.48 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 183 EQIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 183 ~~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.-+..+|.... .....|.++|++|.|||++|.++++.+
T Consensus 91 ~~l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34556665432 234568899999999999999999853
No 467
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.35 E-value=0.36 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 468
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.30 E-value=0.25 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 469
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.27 E-value=0.25 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 458999999999999999998864
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.23 E-value=0.22 Score=51.48 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|..|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 471
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.20 E-value=0.26 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+++|+|..|.|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998743
No 472
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.19 E-value=0.37 Score=55.80 Aligned_cols=87 Identities=22% Similarity=0.250 Sum_probs=48.3
Q ss_pred EEEEEEecCCCcHHHHH-HHHHHHHhc------CCCc-eEEEEecccccCCCCCHHHHHHHHHHH--hcCCCccc---c-
Q 047103 198 QIVGIWGMGGIGKITLA-TAIFNQFSG------GFEG-TCFVADVRRNSGTGGGLEHLQKQILST--ILSEKLEV---A- 263 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA-~~v~~~~~~------~F~~-~~~v~~v~~~~~~~~~l~~l~~~ll~~--l~~~~~~~---~- 263 (1095)
..++|.|..|+|||+|| ..+.++... +-+. ++|+. +.+.. ..+..+.+.+... +.....-. +
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~-IGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA-IGQKR---STVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE-ESCCH---HHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE-CCCCc---HHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 45789999999999995 577776552 2444 44443 43322 2345555555543 11110000 1
Q ss_pred -----------CCCchHHHHhhhcCCeEEEEecCCCCh
Q 047103 264 -----------GPNIPQFTKGRFRCMKVLIVLDNVSKV 290 (1095)
Q Consensus 264 -----------~~~~~~~l~~~L~~kr~LlVLDdv~~~ 290 (1095)
+..+.+++++ .++.+||++||+...
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDLSKQ 274 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCHHHH
Confidence 1112233333 478999999999543
No 473
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.18 E-value=0.33 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
-.+||.|++|.||||+|+.+..++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998875
No 474
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.15 E-value=0.5 Score=48.02 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.1
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHHHHhcCCCceEEEE
Q 047103 198 QIVGIW-GMGGIGKITLATAIFNQFSGGFEGTCFVA 232 (1095)
Q Consensus 198 ~vi~I~-GmgGiGKTTLA~~v~~~~~~~F~~~~~v~ 232 (1095)
++|+|+ +-||+||||+|..++..+..+=..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 678888 77999999999999987765433344443
No 475
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.14 E-value=0.26 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 476
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.14 E-value=0.31 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.-.+++|+|..|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999999865
No 477
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.13 E-value=0.28 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHH
Q 047103 196 TVQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 196 ~~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.-.+++|+|..|.|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 478
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.00 E-value=3.2 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|+.|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 37899999999999999998764
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.96 E-value=0.27 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.89 E-value=0.32 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998874
No 481
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.87 E-value=1.6 Score=48.55 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=32.9
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHHHHhc------CCCceEEEE
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFNQFSG------GFEGTCFVA 232 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~~~~~------~F~~~~~v~ 232 (1095)
.+-.+|..+- ..-.++.|+|.+|+||||||..++..... .=..++|+.
T Consensus 110 ~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3444443222 45579999999999999999998886432 224567775
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.82 E-value=0.28 Score=52.43 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=25.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
-.+++|+|..|.|||||++.++.-+. . .+.+++
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i 78 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKI 78 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEE
Confidence 35899999999999999999987443 1 344444
No 483
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.79 E-value=0.37 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 484
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.71 E-value=0.37 Score=54.91 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHhhhccCCCCcEEEEEEecCCCcHHHHHHHHHH
Q 047103 184 QIKPLLCMELSDTVQIVGIWGMGGIGKITLATAIFN 219 (1095)
Q Consensus 184 ~l~~~L~~~~~~~~~vi~I~GmgGiGKTTLA~~v~~ 219 (1095)
++.+.|.... ....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~-~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEID-SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHH-HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcc-cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3444443322 4457999999999999999999987
No 485
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.69 E-value=1 Score=49.69 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcC------CCceEEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGG------FEGTCFVA 232 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~------F~~~~~v~ 232 (1095)
-.++.|+|.+|+||||||..++...... =..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4589999999999999999998765322 24567775
No 486
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.66 E-value=0.28 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 487
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.66 E-value=0.29 Score=51.90 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=25.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
.+++|+|..|.|||||++.++.-+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 589999999999999999998754433 44444
No 488
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.64 E-value=0.65 Score=51.87 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
..-.++.|+|..|+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345899999999999999999998875
No 489
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.60 E-value=0.3 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999876
No 490
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.57 E-value=0.4 Score=55.42 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcHHHHH-HHHHHHHhcCCCce-EEEEecccccCCCCCHHHHHHHHHHH--hcCCCccc---c-------
Q 047103 198 QIVGIWGMGGIGKITLA-TAIFNQFSGGFEGT-CFVADVRRNSGTGGGLEHLQKQILST--ILSEKLEV---A------- 263 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA-~~v~~~~~~~F~~~-~~v~~v~~~~~~~~~l~~l~~~ll~~--l~~~~~~~---~------- 263 (1095)
..++|.|..|+|||||| ..+.+... -+.. +|+ -+.+.. ..+..+.+.+... +.....-. +
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~-~IGeR~---~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYV-AIGQKK---SAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEE-EESCCH---HHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEE-EcCCCc---HHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 45789999999999996 47777543 3433 344 343322 3345556665543 11110000 1
Q ss_pred -----CCCchHHHHhhhcCCeEEEEecCCCCh
Q 047103 264 -----GPNIPQFTKGRFRCMKVLIVLDNVSKV 290 (1095)
Q Consensus 264 -----~~~~~~~l~~~L~~kr~LlVLDdv~~~ 290 (1095)
+..+.+++++ .++.+||++||+...
T Consensus 250 ~a~~~a~tiAEyfrd--~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAY--SGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEeccHHHH
Confidence 1112233333 478999999999554
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.57 E-value=0.37 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 492
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.49 E-value=0.29 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHH
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-.+++|+|..|.|||||++.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998863
No 493
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.47 E-value=0.96 Score=50.20 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHh
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFS 222 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~ 222 (1095)
....+++|+|.+|+|||||.+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4568999999999999999999987654
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.46 E-value=0.26 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHH
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998764
No 495
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.44 E-value=0.6 Score=55.12 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHHHhcCC
Q 047103 195 DTVQIVGIWGMGGIGKITLATAIFNQFSGGF 225 (1095)
Q Consensus 195 ~~~~vi~I~GmgGiGKTTLA~~v~~~~~~~F 225 (1095)
....+|.++|++|.||||+|++++..+...|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3457899999999999999999998775444
No 496
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.34 E-value=0.3 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
.+++|+|..|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.32 E-value=0.3 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=25.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhcCCCceEEE
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSGGFEGTCFV 231 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~~F~~~~~v 231 (1095)
-.+++|+|..|.|||||++.++.-+.. ..+.+++
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 80 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNL 80 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEE
Confidence 358999999999999999998874332 2344444
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.25 E-value=0.31 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 047103 198 QIVGIWGMGGIGKITLATAIFNQF 221 (1095)
Q Consensus 198 ~vi~I~GmgGiGKTTLA~~v~~~~ 221 (1095)
.+|+|.|+.|.||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998864
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.25 E-value=0.56 Score=55.67 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=24.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHHHhc
Q 047103 197 VQIVGIWGMGGIGKITLATAIFNQFSG 223 (1095)
Q Consensus 197 ~~vi~I~GmgGiGKTTLA~~v~~~~~~ 223 (1095)
-.+|+|+|+.|.||||||+.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 478999999999999999999998764
No 500
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.20 E-value=0.4 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 047103 199 IVGIWGMGGIGKITLATAIFNQ 220 (1095)
Q Consensus 199 vi~I~GmgGiGKTTLA~~v~~~ 220 (1095)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
Done!