BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047109
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/400 (21%), Positives = 163/400 (40%), Gaps = 40/400 (10%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLIDQVYFQKFDAVVGETTI 502
+G+CVD+ F+ + R + +N ++ ++ + K D + TI
Sbjct: 413 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 472
Query: 503 TANRSLYVDFTLPYTDMGIGMIV--PTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVW 560
T R +DF+ P+ +GI +++ P ++ FL PL +W+ ++ V++
Sbjct: 473 TLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF 532
Query: 561 IIER--PIN---DEFQ-------GSPAHQFGMIFWYSFSTLVFSQREKLLSNWS---KXX 605
++ R P +EF+ ++FG+ FS F Q+ +S S +
Sbjct: 533 LVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIV 592
Query: 606 XXXXXXXXXXXTSSYTATLTSMLTVQQI--KLASRDNIGSQ----LGSFVPGALSNLNFK 659
SSYTA L + LTV+++ + S +++ Q G+ G+ F+
Sbjct: 593 GGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEF-FR 651
Query: 660 DSRLKKYN-------SAEE------FANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDY 706
S++ ++ SAE A +++ K+ G A + E + ++ +
Sbjct: 652 RSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLE-STMNEYIEQRKPCD 710
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSFMHVDX 766
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 711 TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSG 770
Query: 767 XXXXXXXXXXXXFGGLFLITGISSTLALVAFLVSSIHKKR 806
G+F I LA++ L+ +K R
Sbjct: 771 SKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSR 810
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 416 LRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNG 475
+R VP + H KGFC+D+ K ++ F +
Sbjct: 31 IRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGK 90
Query: 476 RMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ G +N +I +V++Q+ D +G TI RS VDF++P+ + GI ++V
Sbjct: 91 KIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 436 QSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDA 495
+ +N KGFC+D+ K ++ F + ++ +N +I +V +Q+
Sbjct: 49 EGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVM 108
Query: 496 VVGETTITANRSLYVDFTLPYTDMGIGMIV 525
VG TI RS VDF++P+ + GI ++V
Sbjct: 109 AVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 716 TSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWF 754
T+G+G QKGSP I A+ + +G + ++E W
Sbjct: 240 TTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 152/367 (41%), Gaps = 45/367 (12%)
Query: 30 YALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSK 89
+A+NT + R +L + D T +NL + + C +++ A I S
Sbjct: 28 FAVNTINRNRTLLPNTTLTYD-----TQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 90 AKIPVISLYATL--PSSLTSYSIQIDQDDEAS--------QSQAKGIADLIRVFKWKHVI 139
+ V S+ L P T + Q+ + ++ S ++ I DL++ FKWK V
Sbjct: 83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVT 142
Query: 140 LIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITI-SMSSNTDDQVIEKLSMLKSSETKVF 198
++Y+D+T +I L R+ I + ++T D M + E V
Sbjct: 143 VVYDDST----GLI--RLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHV- 195
Query: 199 VVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYV 258
+ SH +A+ + A +GMM++ Y +I T T++ L ++D S + GF+
Sbjct: 196 IFDCSHEMAAGILKQALAMGMMTEYYHYIFT--TLD-LFALDVEPYRYSGVNMTGFRILN 252
Query: 259 PASKQLRNFTLKWKREMYLNNQNAEVSELD----VHGILAYDTVWALAKASEKL-KTEIS 313
+ Q+ + KW E + LD L YD V ++ A ++ + +S
Sbjct: 253 TENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVS 312
Query: 314 NETC-----------YYKQILNSRFTGLSGD--FQLINGKLTSSRAFEIVNVIGKTVKIV 360
+ C + I + + GL+G F NG L + +++++ + ++ +
Sbjct: 313 SLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNG-LRTDFDLDVISLKEEGLEKI 371
Query: 361 GFWTPTT 367
G W P +
Sbjct: 372 GTWDPAS 378
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 151/367 (41%), Gaps = 45/367 (12%)
Query: 30 YALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSK 89
+A+NT + R +L + D T +NL + + C +++ A I S
Sbjct: 28 FAVNTINRNRTLLPNTTLTYD-----TQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 90 AKIPVISLYATL--PSSLTSYSIQIDQDDEAS--------QSQAKGIADLIRVFKWKHVI 139
+ V S+ L P T + Q+ + ++ S ++ I DL++ FKWK V
Sbjct: 83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVT 142
Query: 140 LIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITI-SMSSNTDDQVIEKLSMLKSSETKVF 198
++Y+D+T +I L R+ I + ++T D M + E V
Sbjct: 143 VVYDDST----GLI--RLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHV- 195
Query: 199 VVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYV 258
+ SH +A+ + A + MM++ Y +I T T++ L ++D S + GF+
Sbjct: 196 IFDCSHEMAAGILKQALNMSMMTEYYHYIFT--TLD-LFALDVEPYRYSGVNMTGFRILN 252
Query: 259 PASKQLRNFTLKWKREMYLNNQNAEVSELD----VHGILAYDTVWALAKASEKL-KTEIS 313
+ Q+ + KW E + LD L YD V ++ A ++ + +S
Sbjct: 253 TENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVS 312
Query: 314 NETC-----------YYKQILNSRFTGLSGD--FQLINGKLTSSRAFEIVNVIGKTVKIV 360
+ C + I + + GL+G F NG L + +++++ + ++ +
Sbjct: 313 SLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNG-LRTDFDLDVISLKEEGLEKI 371
Query: 361 GFWTPTT 367
G W P +
Sbjct: 372 GTWDPAS 378
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 126 IADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIE 185
I L++ ++WK V + +D S+ + L L+ DI+I+ + S T
Sbjct: 145 ILKLLKHYQWKRVGTLTQDVQRFSE-VRNDLTGVLYGEDIEISDTESFSNDPCTS----- 198
Query: 186 KLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA----STMNFLHSMDS 241
+ LK ++ ++ + +A+ +F A + M Y WI+ S +H+ +
Sbjct: 199 -VKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEAN 257
Query: 242 SV------VESSMQGVLGFKRYVPASKQLRNFTLK--WKREMYLNNQNAEVSELDVHGIL 293
S + ++M+G +G +SKQ++ + K + E NN+ + V HG
Sbjct: 258 SSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG-Y 316
Query: 294 AYDTVWALAKASEK 307
AYD +W +AK ++
Sbjct: 317 AYDGIWVIAKTLQR 330
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 116 DEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISM 175
D AS S A I DL++ KW+ ++Y+D+T +I + + +I +I +
Sbjct: 124 DYASLSHA--ILDLVQSLKWRSATVVYDDST----GLIRLQELIMAPSRYNIRLKIR-QL 176
Query: 176 SSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNF 235
++DD M + E ++ + SH +A+ + A +GMM++ Y +I T T++
Sbjct: 177 PIDSDDSRPLLKEMKRGREFRI-IFDCSHTMAAQILKQAMAMGMMTEYYHFIFT--TLD- 232
Query: 236 LHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELD----VHG 291
L+++D S + GF+ + + KW E AE LD
Sbjct: 233 LYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDA 292
Query: 292 ILAYDTVWALAKASEKL-KTEISNETCYYKQ-----------ILNSRFTGLSGDFQLING 339
L YD V ++ ++ + +++ C+ + I +++ GL+G +++
Sbjct: 293 ALLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTG--RIVFN 350
Query: 340 KLTSSRA---FEIVNVIGKTVKIVGFWTPT 366
K + R +I+++ ++ VG W+P
Sbjct: 351 KTSGLRTDFDLDIISLKEDGLEKVGVWSPA 380
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMP---GSYNDLIDQVYFQKFDAVVGETT 501
+GF +DV A + L F YE D P G++N L+ ++ F++ D + T
Sbjct: 30 QGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALT 87
Query: 502 ITANRSLYVDFTLPYTDMGIGMIV 525
IT +R VDFT Y D +G+++
Sbjct: 88 ITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMP---GSYNDLIDQVYFQKFDAVVGETT 501
+GF +DV A + L F YE D P G++N L+ ++ F++ D + T
Sbjct: 30 QGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALT 87
Query: 502 ITANRSLYVDFTLPYTDMGIGMIV 525
IT +R VDFT Y D +G+++
Sbjct: 88 ITPDRENVVDFTTRYMDYSVGVLL 111
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 620 YTATLTSMLTVQQIKLASRDNIGSQLGSFVPGALS----NLNFKDSRLKKYNSAEEFANA 675
Y + L +M+ + S D++ ++ + G + + K ++++ + ++ A
Sbjct: 107 YDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLA 166
Query: 676 LSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVHDISR 735
L G + A + + P + F+ +A + +G F KGSPLV ++
Sbjct: 167 LEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNA 222
Query: 736 AIAKLREEGTLRKIEIEWFNDQ 757
+A+++ +G KI +WF +
Sbjct: 223 ELARMKADGRYAKIYKKWFGSE 244
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 478 PGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
P + LI + Q D + TI R +DF+ PY D G+ +V
Sbjct: 68 PMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMV 115
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 28 DFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA--HILAE 85
DF+ L+ + LV + + DP +T + +LM + +Q ++ + T A IL
Sbjct: 28 DFHHLSVVPRVELVAMN---ETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDF 84
Query: 86 IGSKAKIPVISLYATLPSSLTSYSIQIDQDDEAS--------QSQAKGIADLIRVFKWKH 137
I ++ P++ ++ S I D+D+ + + QA + +++ + W +
Sbjct: 85 ISAQTLTPILGIHGG------SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDW-Y 137
Query: 138 VILIYEDNTWGSDNIIPYLFDSLHDNDI--DIARRITISMSSNTDDQVIEKLSMLKSSET 195
+ I G + + + ++ ++ + ++ + + MS + D I+ + LK ++
Sbjct: 138 IFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQ--NQLKKLQS 195
Query: 196 KVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230
+ +++ + A+++F A +G+ GY+WIV +
Sbjct: 196 PIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 230
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 28 DFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA--HILAE 85
DF+ L+ + LV + + DP +T + +LM + +Q ++ + T A IL
Sbjct: 27 DFHHLSVVPRVELVAMN---ETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDF 83
Query: 86 IGSKAKIPVISLYATLPSSLTSYSIQIDQDDEAS--------QSQAKGIADLIRVFKWKH 137
I ++ P++ ++ S I D+D+ + + QA + +++ + W +
Sbjct: 84 ISAQTLTPILGIHGG------SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDW-Y 136
Query: 138 VILIYEDNTWGSDNIIPYLFDSLHDNDI--DIARRITISMSSNTDDQVIEKLSMLKSSET 195
+ I G + + + ++ ++ + ++ + + MS + D I+ + LK ++
Sbjct: 137 IFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQ--NQLKKLQS 194
Query: 196 KVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230
+ +++ + A+++F A +G+ GY+WIV +
Sbjct: 195 PIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 229
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 658 FKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTS 717
FK+++LK Y++ E + NG I ++P+ AF A+ Y + T
Sbjct: 134 FKNAKLKTYDTEAEAVQEVL----NGKADXFIFDLPFNVAFXAQKGQGYLVHLDTSLTYE 189
Query: 718 GFGFVFQKGSP-LVHDISRAIAKLREEGTLRKIEIEWFNDQQ 758
G+ +KG P ++ ++ +A+++ +G+ ++ WF D +
Sbjct: 190 PLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTK 231
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 477 MPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIF 536
+P S++ LI + +KFD ++ TI+ R+L V+F PY +G ++V + +
Sbjct: 49 VPTSWDGLIPGLVTEKFDIIISGXTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSY 108
Query: 537 LKPLKPNLWLTT 548
KP L L T
Sbjct: 109 KDLDKPELTLVT 120
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRM-----PGSYN 482
FV + +++ +G+C+D+ K L F YE ED G+ G +N
Sbjct: 16 FVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFS--YEIRLVED--GKYGAQDDKGQWN 71
Query: 483 DLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
++ ++ K D V TIT R +DF+ P+ +G+ ++ P D +++
Sbjct: 72 GMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDSADDL 126
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRM-----PGSYN 482
FV + +++ +G+C+D+ K L F YE ED G+ G +N
Sbjct: 18 FVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFS--YEIRLVED--GKYGAQDDKGQWN 73
Query: 483 DLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
++ ++ K D V TIT R +DF+ P+ +G+ ++ P D +++
Sbjct: 74 GMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDSADDL 128
>pdb|2O1M|A Chain A, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
pdb|2O1M|B Chain B, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
Length = 258
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 668 SAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQKGS 727
A E AN L G + IS P+ F K ST N + + F F K
Sbjct: 159 GANETANQLKSGRADATIST-----PFAVDFQNKTSTIKEKTVGNVLSNAKVYFXFNKNE 213
Query: 728 P-LVHDISRAIAKLREEGTLRKIEIEWFNDQQSSFMHVD 765
L DI +A+ ++ ++GTL+++ ++W D S +++
Sbjct: 214 QTLSDDIDKALQEIIDDGTLKRLSLKWLGDDYSKEQYLE 252
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 42 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 97
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMIV--PTDRNNNMWIFL 537
IT R +DF+ P+ +GI ++ P N ++ FL
Sbjct: 98 PLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFL 138
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 698 FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWF 754
F+ + + + T I + G+G GSP I+ AI +L+EEG L ++ +W+
Sbjct: 231 FVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWW 286
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITCVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAICQLQEEGKLHMMKEKWWR 253
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIP---FEDPNGRMPGSYNDLIDQVYFQKFDAVVGETT 501
+G+C+D+ K + L F + +P + N + G +N ++ ++ + D V T
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK--GEWNGMVKELIDHRADLAVAPLT 90
Query: 502 ITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 32 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDH----KADLAVA 87
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 88 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 111 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 169
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 170 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 228
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 229 KITIAILQLQEEGKLHMMKEKWWR 252
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIP---FEDPNGRMPGSYNDLIDQVYFQKFDAVVGETT 501
+G+C+D+ K + L F + +P + N + G +N ++ ++ + D V T
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK--GEWNGMVKELIDHRADLAVAPLT 90
Query: 502 ITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIP---FEDPNGRMPGSYNDLIDQVYFQKFDAVVGETT 501
+G+C+D+ K + L F + +P + N + G +N ++ ++ + D V T
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK--GEWNGMVKELIDHRADLAVAPLT 90
Query: 502 ITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIP---FEDPNGRMPGSYNDLIDQVYFQKFDAVVGETT 501
+G+C+D+ K + L F + +P + N + G +N ++ ++ + D V T
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK--GEWNGMVKELIDHRADLAVAPLT 90
Query: 502 ITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIP---FEDPNGRMPGSYNDLIDQVYFQKFDAVVGETT 501
+G+C+D+ K + L F + +P + N + G +N ++ ++ + D V T
Sbjct: 32 EGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDK--GEWNGMVKELIDHRADLAVAPLT 89
Query: 502 ITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 90 ITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 125
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKRSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI KL+EEG L ++ +W+
Sbjct: 230 KITLAILKLQEEGKLHMMKEKWWR 253
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAILQLQEEGKLHMMKEKWWR 253
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRK 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAILQLQEEGKLHMMKEKWWR 253
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKRSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAILQLQEEGKLHMMKEKWWR 253
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI KL+E+G L ++ +W+
Sbjct: 230 KITLAILKLQEQGKLHMMKEKWWR 253
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAILQLQEEGKLHMMKEKWWR 253
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 445 KGFCVDVFK--AAIDSLTFEVPY----EFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVG 498
+G+C+D+ + + I T+E+ ++ +D NG+ G +LID K D V
Sbjct: 33 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH----KADLAVA 88
Query: 499 ETTITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G KGSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPKGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI +L+EEG L ++ +W+
Sbjct: 230 KITIAILQLQEEGKLHMMKEKWWR 253
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 438 VNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVV 497
V+A + GF +DV A + E + S++ LI + F+KFDAV+
Sbjct: 22 VDADNKIVGFDIDVANAVCKEMQAECSF-----------TNQSFDSLIPSLRFKKFDAVI 70
Query: 498 GETTITANRSLYVDFTLPYTDMGIGMIVPTDR 529
+T R V F+ PY + G+ +V T +
Sbjct: 71 AGMDMTPKREQQVSFSQPYYE-GLSAVVVTRK 101
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFED----PNGRMPGSYNDLIDQVYFQKFDAVVGET 500
+G+C+D+ + L F YE ED + G +N ++ ++ K D V
Sbjct: 33 EGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPL 90
Query: 501 TITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 AITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKKSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI KL+EEG L ++ +W+
Sbjct: 230 KITLAILKLQEEGKLHMMKEKWWR 253
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFED----PNGRMPGSYNDLIDQVYFQKFDAVVGET 500
+G+C+D+ + L F YE ED + G +N ++ ++ K D V
Sbjct: 33 EGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPL 90
Query: 501 TITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 AITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKRSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI KL+EEG L ++ +W+
Sbjct: 230 KITLAILKLQEEGKLHMMKEKWWR 253
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFED----PNGRMPGSYNDLIDQVYFQKFDAVVGET 500
+G+C+D+ + L F YE ED + G +N ++ ++ K D V
Sbjct: 33 EGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPL 90
Query: 501 TITANRSLYVDFTLPYTDMGIGMI----VPTDRNNNM 533
IT R +DF+ P+ +GI ++ P D +++
Sbjct: 91 AITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 626 SMLTVQQIKLASRDNIGSQ----LGSFVPGALSNLNFKDSRLKKYNSAEEFANA-----L 676
S+L + + S D++ Q G+ GA FK S++ Y+ F ++ L
Sbjct: 112 SILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTF-FKRSKISTYDKMWAFMSSRRQSVL 170
Query: 677 SKGSKNGGISAIIDEIPYIKA-----FLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVH 731
K ++ G + + ++ F+ + + + T I + G+G GSP
Sbjct: 171 VKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSPYRD 229
Query: 732 DISRAIAKLREEGTLRKIEIEWFN 755
I+ AI KL+E+G L ++ +W+
Sbjct: 230 KITLAILKLQEQGKLHMMKEKWWR 253
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ +++ +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGISIMI 112
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 255
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 29 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 88
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 89 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 128
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 221 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 271
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V ++ + + +G+CVD+ + + + R P + +N ++
Sbjct: 13 YVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + + D V TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDK 255
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 17 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 76
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 77 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 116
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 209 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 259
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V ++ + + +G+CVD+ + + + R P + +N ++
Sbjct: 13 YVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + + D V TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDK 255
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V ++ + + +G+CVD+ + + + R P + +N ++
Sbjct: 32 YVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 91
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + + D V TIT R +DF+ P+ +GI +++
Sbjct: 92 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 131
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 224 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDK 274
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDK 258
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 45 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 104
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 105 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 144
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 237 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDK 287
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 32 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 91
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 92 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 131
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 224 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 274
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V ++ + + +G+CVD+ + + + R P + +N ++
Sbjct: 13 YVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + + D V TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDK 255
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 28 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 87
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP---TDRN 530
++ + K D + TIT R +DF+ P+ +GI +++ TD N
Sbjct: 88 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPGTDGN 135
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 224 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 274
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKWWYDK 258
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V ++ + + +G+CVD+ + + + R P + +N ++
Sbjct: 13 YVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + + D V TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDK 255
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 15 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 74
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 75 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 114
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 207 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 257
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDK 255
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 255
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 73
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 74 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 206 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 41/239 (17%)
Query: 122 QAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDS-LHDNDIDIARRITISMSSNTD 180
QAK +A+++R F W +V + + +G I + ++ L + I A ++ S +
Sbjct: 172 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSY 231
Query: 181 DQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT---ASTMNFLH 237
D VI +L L+ +V V+ M + L A + + ++W+ + + + +
Sbjct: 232 DSVIREL--LQKPNARVVVLFMRSDDSRELIAAASR---ANASFTWVASDGWGAQESIIK 286
Query: 238 SMD-----SSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMY-------LNNQNAEVS 285
+ + +E + Q V F RY + N W R+ + L N+
Sbjct: 287 GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRR 346
Query: 286 ELDVHGILAYDT---------------VWALAKASEKLKTEISNET---CYYKQILNSR 326
D H LA D+ V+A+A A K++ + T C +IL+ +
Sbjct: 347 VCDKH--LAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGK 403
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 73
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 74 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 716 TSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
+ G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 215 SKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDK 258
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 73
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 74 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 206 TMKVGGNLDCKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDK 258
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 481 YNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPL 540
++ LI + KFDA+ G IT R VDFT PY + I D+N + + + L
Sbjct: 50 WDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFI--ADKNTPLTLSKQGL 107
Query: 541 K 541
K
Sbjct: 108 K 108
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDK 258
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDK 258
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 51/244 (20%)
Query: 122 QAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDS-LHDNDIDIARRITISMSSNTD 180
QAK +A+++R F W +V + + +G I + ++ L + I A ++ S +
Sbjct: 173 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSY 232
Query: 181 DQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMD 240
D VI +L L+ +V V+ M + L A ++ + ++W+ +
Sbjct: 233 DSVIREL--LQKPNARVVVLFMRSDDSRELIAAANRV---NASFTWVASDG-----WGAQ 282
Query: 241 SSVVESSMQGVLG-------------FKRYVPASKQLRNFTLKWKREMY-------LNNQ 280
S+V+ S G F RY + N W R+ + L N+
Sbjct: 283 ESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNK 342
Query: 281 NAEVSELDVHGILAYDT---------------VWALAKASEKLKTEISNET---CYYKQI 322
D H LA D+ V+A+A A K++ + +T C +I
Sbjct: 343 RNHRQVCDKH--LAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKI 400
Query: 323 LNSR 326
L+ +
Sbjct: 401 LDGK 404
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L + ++ A+ KL E+G L K++ +W+ D+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 255
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMV 72
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 73 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 428 FVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLI 485
+V + ++ + + +G+CVD+ F+ + R + +N ++
Sbjct: 15 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 74
Query: 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV 525
++ + K D + TIT R +DF+ P+ +GI +++
Sbjct: 75 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 114
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 707 TMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
TM + G+G KGS L ++ A+ KL E+G L K++ +W+ D+
Sbjct: 207 TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDK 257
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 128 DLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKL 187
+++RV+ W H+IL+ D+ G ++L + A ++ + T + V L
Sbjct: 133 EMMRVYNWNHIILLVSDDHEG--RAAQKRLETLLEERESKAEKV-LQFDPGTKN-VTALL 188
Query: 188 SMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228
+ E +V ++ S A+ ++ A L M GY W+V
Sbjct: 189 MEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLV 229
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLIDQVYFQKFDAVVGETTI 502
+G+CVD+ + + +P R + +N ++ ++ + K + + TI
Sbjct: 29 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 88
Query: 503 TANRSLYVDFTLPYTDMGIGMIV 525
T R +DF+ P+ +GI +++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 716 TSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
+ G+G KGS L ++ A+ KL E G L K++ +W+ D+
Sbjct: 213 SKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDK 254
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLIDQVYFQKFDAVVGETTI 502
+G+CVD+ + + +P R + +N ++ ++ + K + + TI
Sbjct: 31 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 90
Query: 503 TANRSLYVDFTLPYTDMGIGMIV 525
T R +DF+ P+ +GI +++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 716 TSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
+ G+G KGS L ++ A+ KL E G L K++ +W+ D+
Sbjct: 215 SKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDK 256
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 445 KGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGS--YNDLIDQVYFQKFDAVVGETTI 502
+G+CVD+ + + +P R + +N ++ ++ + K + + TI
Sbjct: 29 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 88
Query: 503 TANRSLYVDFTLPYTDMGIGMIV 525
T R +DF+ P+ +GI +++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 716 TSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQ 757
+ G+G KGS L ++ A+ KL E G L K++ +W+ D+
Sbjct: 213 SKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDK 254
>pdb|1XT8|A Chain A, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
pdb|1XT8|B Chain B, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
Length = 292
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRN 530
K D ++ T T R+ VDF PY + +G+ VP D N
Sbjct: 106 KVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN 144
>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
pdb|3KXQ|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
Length = 275
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 292 ILAYDTVWALAKASEKLKTEISNETCYYKQILNSRFTGLSGDFQLI-NGKLTSSRAFEIV 350
I+AY+ VWA+ + +++ + ++SRF +L+ G + S AFE++
Sbjct: 186 IIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELL 245
Query: 351 N--------VIGKTVKIVGFWT 364
+ + G ++K + F T
Sbjct: 246 STAHVNGALIGGASLKAIDFLT 267
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 393 ELEAIIWPGGSVAIP-----VGSGKINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGF 447
E + W V P V S K K RI V V + + V +D + ++K
Sbjct: 96 EYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIK-- 153
Query: 448 CVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS 507
+V I ++ FE P ++ P DP G +N D + ++ G + I + +
Sbjct: 154 --NVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSI------SIEGSSHIWIDHN 205
Query: 508 LYVDFTLPYTDMG 520
+ D P +G
Sbjct: 206 TFTDGDHPDRSLG 218
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 687 AIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVHD-ISRAIAKLREEGT 745
A++ + P I F+ + +G F KGS + D ++ A+ LRE GT
Sbjct: 153 AVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212
Query: 746 LRKIEIEWFNDQ 757
+I +WF +
Sbjct: 213 YNEIYKKWFGTE 224
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 203 SHALASHLFLN-AKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPA- 260
++A SHL L A +LGM S Y +I+T LH +D V +SS +LGF + +
Sbjct: 199 ANASISHLVLRKASELGMTSAFYKYILTTMDFPILH-LDGIVEDSS--NILGFSMFNTSH 255
Query: 261 ---SKQLRNFTLKWKREMYLNNQNAEVSELD---VHGILAYDTVWALAKASEKL 308
+ +R+ + W+ +N E S + L +D V + A +L
Sbjct: 256 PFYPEFVRSLNMSWR-------ENCEASTYPGPALSAALMFDAVHVVVSAVREL 302
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 687 AIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTL 746
A++ + P + + A I + +G + SP I++A+ L+E GT
Sbjct: 154 AVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTY 213
Query: 747 RKIEIEWFNDQQS 759
+ + +WF+ + S
Sbjct: 214 QSLYDKWFDPKNS 226
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 15/176 (8%)
Query: 122 QAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTD- 180
QA+ + D+++ W +V + + ++G + + S + IA+ + I
Sbjct: 173 QAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRT 232
Query: 181 ---DQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT---ASTMN 234
D++I++L L + ++ V+ + + AK+ + + W+ + S +N
Sbjct: 233 IDFDRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKIN 289
Query: 235 FLHSMD-----SSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVS 285
LH + + ++ V GF Y + N W E + N N +++
Sbjct: 290 PLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLT 345
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 438 VNATLIVKGFCVDVFKA-AIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAV 496
V+A +GF V++ K A D L EF+ E N ++ V K D +
Sbjct: 71 VDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAAN---------RVEYVRSGKVDLI 121
Query: 497 VGETTITANRSLYVDFTLPYTDMGIGMIVPTDR 529
+ T T R+ VDF PY + +G++ P ++
Sbjct: 122 LANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 15/176 (8%)
Query: 122 QAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTD- 180
QA+ + D+++ W +V + + ++G + + S + IA+ + I
Sbjct: 173 QAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRT 232
Query: 181 ---DQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT---ASTMN 234
D++I++L L + ++ V+ + + AK+ + + W+ + S +N
Sbjct: 233 IDFDRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKIN 289
Query: 235 FLHSMD-----SSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVS 285
LH + + ++ V GF Y + N W E + N N +++
Sbjct: 290 PLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLT 345
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 416 LRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNG 475
LRIGV + V V D N T + G+ +D+ + D + F + P PN
Sbjct: 10 LRIGVIESVPFTIVANVIDTSGRNTTKLT-GYVLDLIEYLRDKMGFVADVQLAP---PNT 65
Query: 476 RMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTD 518
SY L+ + +D +G+ T+T+ R V F+ +D
Sbjct: 66 ----SYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISD 104
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 717 SGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQS 759
SGFG +K SP ++S +I K E G + ++ W Q+
Sbjct: 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC 290
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 717 SGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQS 759
SGFG +K SP ++S +I K E G + ++ W Q+
Sbjct: 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC 290
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 492 KFDAVVGETTITANRSLY--VDFTLPYTDMGIGMIVP 526
+ D ++G ++T R+ + FT PY GIG+++P
Sbjct: 65 ELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 492 KFDAVVGETTITANRSLY--VDFTLPYTDMGIGMIVP 526
+ D ++G ++T R+ + FT PY GIG+++P
Sbjct: 65 ELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,326,644
Number of Sequences: 62578
Number of extensions: 895210
Number of successful extensions: 2280
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2124
Number of HSP's gapped (non-prelim): 169
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)