Query 047109
Match_columns 808
No_of_seqs 326 out of 3501
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 5E-93 1.7E-97 853.6 61.5 739 1-807 2-811 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1.1E-47 3.6E-52 417.1 36.3 348 1-370 5-378 (389)
3 2e4u_A Metabotropic glutamate 100.0 1.1E-46 3.8E-51 428.3 40.0 392 1-433 14-512 (555)
4 4f11_A Gamma-aminobutyric acid 100.0 3.6E-46 1.2E-50 412.8 34.0 360 1-404 14-422 (433)
5 3h6g_A Glutamate receptor, ion 100.0 1.4E-45 4.7E-50 402.9 35.3 355 1-371 4-382 (395)
6 3hsy_A Glutamate receptor 2; l 100.0 1.5E-45 5.1E-50 399.1 32.4 347 1-370 2-372 (376)
7 4gpa_A Glutamate receptor 4; P 100.0 7.7E-45 2.6E-49 396.8 37.3 349 1-371 5-377 (389)
8 3om0_A Glutamate receptor, ion 100.0 2.5E-45 8.6E-50 400.3 32.2 355 1-372 4-381 (393)
9 3sm9_A Mglur3, metabotropic gl 100.0 1.3E-44 4.5E-49 402.1 37.5 350 1-364 13-462 (479)
10 3saj_A Glutamate receptor 1; r 100.0 1E-44 3.4E-49 393.9 32.3 341 1-369 10-374 (384)
11 1dp4_A Atrial natriuretic pept 100.0 1.1E-44 3.9E-49 401.3 31.3 377 1-411 2-423 (435)
12 1jdp_A NPR-C, atrial natriuret 100.0 3.5E-44 1.2E-48 397.6 34.4 352 1-368 9-397 (441)
13 3mq4_A Mglur7, metabotropic gl 100.0 2.1E-44 7.2E-49 401.8 28.4 352 1-364 16-467 (481)
14 3ks9_A Mglur1, metabotropic gl 100.0 3.5E-43 1.2E-47 392.5 38.0 351 2-364 18-474 (496)
15 3qek_A NMDA glutamate receptor 100.0 3.3E-42 1.1E-46 374.4 32.8 318 1-365 5-369 (384)
16 4f06_A Extracellular ligand-bi 100.0 1.1E-37 3.7E-42 336.9 29.5 330 1-353 5-346 (371)
17 3i45_A Twin-arginine transloca 100.0 1.1E-37 3.7E-42 339.5 29.4 341 1-368 5-362 (387)
18 3td9_A Branched chain amino ac 100.0 2.6E-37 8.8E-42 334.0 31.1 336 1-367 16-364 (366)
19 3h5l_A Putative branched-chain 100.0 5.2E-38 1.8E-42 345.7 24.8 340 1-364 14-395 (419)
20 4gnr_A ABC transporter substra 100.0 3.1E-37 1.1E-41 331.5 30.1 332 1-363 7-351 (353)
21 3ipc_A ABC transporter, substr 100.0 1.2E-36 4E-41 327.5 27.6 338 1-366 2-352 (356)
22 3i09_A Periplasmic branched-ch 100.0 2.3E-36 8E-41 327.5 30.0 327 1-355 4-341 (375)
23 3hut_A Putative branched-chain 100.0 5.8E-36 2E-40 322.4 31.2 340 1-366 4-354 (358)
24 3n0x_A Possible substrate bind 100.0 4.3E-36 1.5E-40 325.0 26.8 326 1-356 4-348 (374)
25 3n0w_A ABC branched chain amin 100.0 4.7E-36 1.6E-40 325.5 26.1 329 1-356 6-346 (379)
26 3qel_B Glutamate [NMDA] recept 100.0 2.1E-36 7.3E-41 323.5 21.8 313 2-365 5-351 (364)
27 3eaf_A ABC transporter, substr 100.0 4.5E-35 1.5E-39 319.2 31.1 342 1-367 4-373 (391)
28 3lkb_A Probable branched-chain 100.0 1.5E-35 5E-40 323.3 27.3 346 1-369 7-378 (392)
29 4evq_A Putative ABC transporte 100.0 4.1E-35 1.4E-39 317.9 30.5 337 1-365 16-363 (375)
30 1usg_A Leucine-specific bindin 100.0 2.5E-35 8.4E-40 315.9 27.8 333 1-360 2-345 (346)
31 4eyg_A Twin-arginine transloca 100.0 6.3E-35 2.1E-39 315.6 29.9 340 1-365 6-359 (368)
32 3lop_A Substrate binding perip 100.0 3.8E-35 1.3E-39 316.6 27.5 335 1-358 5-354 (364)
33 1pea_A Amidase operon; gene re 100.0 3.4E-32 1.2E-36 295.7 31.9 343 1-363 7-357 (385)
34 3snr_A Extracellular ligand-bi 100.0 2.2E-31 7.4E-36 287.1 24.8 329 1-360 7-361 (362)
35 3sg0_A Extracellular ligand-bi 100.0 1E-31 3.4E-36 292.5 20.4 330 1-360 27-385 (386)
36 2h4a_A YRAM (HI1655); perplasm 99.9 4.5E-27 1.6E-31 245.4 20.0 306 3-361 2-318 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 3.3E-27 1.1E-31 249.7 18.6 313 1-364 2-323 (327)
38 1yae_A Glutamate receptor, ion 99.9 4.7E-24 1.6E-28 224.1 17.2 261 412-762 11-293 (312)
39 1pb7_A N-methyl-D-aspartate re 99.9 8.4E-24 2.9E-28 219.5 15.0 236 413-761 40-291 (292)
40 3g3k_A Glutamate receptor, ion 99.9 2.6E-23 8.8E-28 212.4 17.3 237 412-761 2-258 (259)
41 2rc8_A Glutamate [NMDA] recept 99.9 1.1E-23 3.9E-28 219.0 14.5 214 443-761 67-293 (294)
42 4h5g_A Amino acid ABC superfam 99.9 2.5E-23 8.7E-28 210.1 13.1 226 412-756 10-238 (243)
43 4gvo_A LMO2349 protein; struct 99.9 8.2E-23 2.8E-27 206.3 14.2 222 412-756 7-236 (243)
44 2a5s_A N-methyl-D-aspartate re 99.9 2.3E-22 7.9E-27 207.9 17.2 218 442-761 55-283 (284)
45 2v3u_A Glutamate receptor delt 99.9 1.1E-21 3.6E-26 201.1 19.8 238 412-761 1-264 (265)
46 3i6v_A Periplasmic His/Glu/Gln 99.9 1E-21 3.5E-26 196.8 16.2 219 413-762 4-224 (232)
47 3kzg_A Arginine 3RD transport 99.9 1.9E-21 6.5E-26 195.6 17.4 225 413-760 2-235 (237)
48 4f3p_A Glutamine-binding perip 99.9 4.8E-21 1.6E-25 194.2 19.9 221 412-757 22-244 (249)
49 1mqi_A Glutamate receptor 2; G 99.9 4E-21 1.4E-25 196.6 19.2 238 413-762 3-263 (263)
50 3k4u_A Binding component of AB 99.9 7.1E-21 2.4E-25 192.4 18.5 229 412-762 3-235 (245)
51 3hv1_A Polar amino acid ABC up 99.9 1.3E-20 4.5E-25 193.3 18.9 222 412-756 19-249 (268)
52 3del_B Arginine binding protei 99.8 2.2E-20 7.4E-25 188.4 18.7 221 412-759 9-236 (242)
53 3tql_A Arginine-binding protei 99.8 4.1E-20 1.4E-24 184.2 18.2 219 414-754 2-227 (227)
54 1ii5_A SLR1257 protein; membra 99.8 7E-20 2.4E-24 183.4 19.8 223 412-756 2-227 (233)
55 3kbr_A Cyclohexadienyl dehydra 99.8 2.6E-20 8.8E-25 187.5 14.7 221 412-756 13-238 (239)
56 3h7m_A Sensor protein; histidi 99.8 9E-20 3.1E-24 182.7 18.5 220 412-756 9-231 (234)
57 3mpk_A Virulence sensor protei 99.8 1.1E-19 3.7E-24 186.3 17.3 220 412-756 30-253 (267)
58 1wdn_A GLNBP, glutamine bindin 99.8 3.1E-19 1.1E-23 177.7 19.4 220 413-757 2-224 (226)
59 4dz1_A DALS D-alanine transpor 99.8 3.1E-19 1.1E-23 181.9 19.0 222 412-756 27-254 (259)
60 4eq9_A ABC transporter substra 99.8 2.3E-19 7.9E-24 181.3 17.6 221 412-756 6-236 (246)
61 2y7i_A STM4351; arginine-bindi 99.8 4.2E-19 1.4E-23 177.2 17.5 219 412-755 4-228 (229)
62 1lst_A Lysine, arginine, ornit 99.8 2.2E-19 7.6E-24 180.6 15.5 222 413-756 3-233 (239)
63 2iee_A ORF2, probable ABC tran 99.8 8.6E-19 2.9E-23 180.0 17.1 222 412-755 19-246 (271)
64 2pyy_A Ionotropic glutamate re 99.8 6.1E-19 2.1E-23 175.8 14.9 221 413-756 2-223 (228)
65 2q88_A EHUB, putative ABC tran 99.8 1.2E-18 4.3E-23 177.3 15.6 223 412-755 11-240 (257)
66 3qax_A Probable ABC transporte 99.8 6.2E-18 2.1E-22 173.2 18.6 218 412-756 29-254 (268)
67 2pvu_A ARTJ; basic amino acid 99.8 1.1E-17 3.8E-22 171.8 19.7 220 412-756 40-263 (272)
68 2vha_A Periplasmic binding tra 99.8 5.3E-18 1.8E-22 175.7 17.1 225 412-757 15-250 (287)
69 1xt8_A Putative amino-acid tra 99.7 9.8E-18 3.4E-22 174.1 15.5 220 412-756 42-266 (292)
70 2yln_A Putative ABC transporte 99.7 2E-17 7E-22 170.7 17.7 220 412-756 55-278 (283)
71 2yjp_A Putative ABC transporte 99.7 1.5E-17 5E-22 172.6 16.0 219 413-756 54-277 (291)
72 4i62_A Amino acid ABC transpor 99.7 2.5E-17 8.5E-22 168.8 17.2 224 412-756 37-265 (269)
73 2v25_A Major cell-binding fact 99.6 1.7E-15 5.9E-20 154.0 11.3 215 412-754 36-258 (259)
74 2ozz_A Hypothetical protein YH 98.8 5.8E-09 2E-13 100.2 9.0 169 442-738 28-211 (231)
75 3n5l_A Binding protein compone 98.3 2.5E-06 8.6E-11 88.1 11.1 212 414-753 4-241 (310)
76 2h3h_A Sugar ABC transporter, 98.2 3.6E-05 1.2E-09 79.8 18.8 209 1-230 1-216 (313)
77 3p7i_A PHND, subunit of alkylp 98.2 5.4E-06 1.9E-10 85.8 11.4 214 412-753 12-250 (321)
78 3brq_A HTH-type transcriptiona 98.2 2.7E-05 9.2E-10 79.9 16.4 209 2-230 20-236 (296)
79 3ksm_A ABC-type sugar transpor 98.2 3.4E-05 1.2E-09 78.2 16.3 211 2-231 1-222 (276)
80 2qh8_A Uncharacterized protein 98.1 8.7E-05 3E-09 76.4 18.3 195 2-218 9-216 (302)
81 3l49_A ABC sugar (ribose) tran 98.1 8.9E-05 3E-09 75.8 17.9 208 2-230 6-224 (291)
82 3lkv_A Uncharacterized conserv 98.1 0.00014 4.8E-09 74.7 19.1 198 1-218 8-220 (302)
83 3rot_A ABC sugar transporter, 98.1 5.2E-05 1.8E-09 77.9 15.5 198 2-220 4-213 (297)
84 1tjy_A Sugar transport protein 98.1 0.00014 4.9E-09 75.3 18.7 206 3-230 5-222 (316)
85 1dbq_A Purine repressor; trans 98.1 9E-05 3.1E-09 75.7 16.8 203 2-223 8-215 (289)
86 2vk2_A YTFQ, ABC transporter p 98.0 0.00018 6.1E-09 74.2 19.0 203 1-223 2-219 (306)
87 3d02_A Putative LACI-type tran 98.0 0.00014 4.9E-09 74.8 18.2 209 1-229 4-222 (303)
88 3brs_A Periplasmic binding pro 98.0 0.00014 4.8E-09 74.2 17.8 209 2-230 6-224 (289)
89 2qu7_A Putative transcriptiona 98.0 3.5E-05 1.2E-09 78.8 12.5 200 2-224 9-216 (288)
90 2fn9_A Ribose ABC transporter, 98.0 0.0002 6.7E-09 73.2 18.0 204 2-227 3-221 (290)
91 3h75_A Periplasmic sugar-bindi 98.0 0.00045 1.5E-08 72.7 21.2 211 2-230 4-241 (350)
92 2rjo_A Twin-arginine transloca 98.0 0.00025 8.5E-09 74.1 18.9 199 2-220 6-222 (332)
93 2x7x_A Sensor protein; transfe 97.9 0.00021 7.3E-09 74.3 17.4 209 2-231 7-223 (325)
94 2iks_A DNA-binding transcripti 97.9 0.00043 1.5E-08 70.7 18.5 207 2-230 21-233 (293)
95 3g1w_A Sugar ABC transporter; 97.9 0.00045 1.5E-08 71.0 18.5 212 3-231 6-222 (305)
96 2h0a_A TTHA0807, transcription 97.9 0.00011 3.7E-09 74.5 13.4 204 3-228 1-213 (276)
97 2ioy_A Periplasmic sugar-bindi 97.9 0.00098 3.3E-08 67.7 20.6 206 2-230 2-216 (283)
98 3c3k_A Alanine racemase; struc 97.9 0.0005 1.7E-08 69.9 18.3 201 2-227 9-216 (285)
99 3lft_A Uncharacterized protein 97.8 0.0013 4.3E-08 67.3 21.0 195 2-219 3-210 (295)
100 3l6u_A ABC-type sugar transpor 97.8 0.0006 2E-08 69.6 18.5 199 2-220 9-220 (293)
101 3o74_A Fructose transport syst 97.8 0.00053 1.8E-08 69.1 17.3 206 3-230 4-215 (272)
102 3dbi_A Sugar-binding transcrip 97.8 0.00028 9.6E-09 73.9 15.3 208 3-230 63-278 (338)
103 3clk_A Transcription regulator 97.8 0.00019 6.6E-09 73.3 13.3 200 2-223 9-213 (290)
104 2fep_A Catabolite control prot 97.8 0.00057 1.9E-08 69.7 16.8 208 2-230 17-231 (289)
105 3k4h_A Putative transcriptiona 97.8 0.00031 1.1E-08 71.8 14.9 203 2-224 9-221 (292)
106 2fvy_A D-galactose-binding per 97.7 0.0028 9.5E-08 65.1 21.8 201 2-218 3-226 (309)
107 3ctp_A Periplasmic binding pro 97.7 0.00022 7.5E-09 74.4 13.4 199 2-227 61-263 (330)
108 3gbv_A Putative LACI-family tr 97.7 0.00038 1.3E-08 71.5 14.9 211 2-231 9-233 (304)
109 3d8u_A PURR transcriptional re 97.7 0.00068 2.3E-08 68.5 16.5 204 2-226 4-212 (275)
110 2o20_A Catabolite control prot 97.7 0.00043 1.5E-08 72.3 14.7 205 2-227 64-271 (332)
111 2hsg_A Glucose-resistance amyl 97.7 0.0004 1.4E-08 72.5 14.0 198 2-220 61-264 (332)
112 1qpz_A PURA, protein (purine n 97.6 0.00093 3.2E-08 69.9 16.5 205 2-225 59-268 (340)
113 3bbl_A Regulatory protein of L 97.6 0.00037 1.3E-08 71.0 13.0 208 2-230 5-224 (287)
114 3k9c_A Transcriptional regulat 97.6 0.0013 4.4E-08 67.0 16.9 200 3-225 14-215 (289)
115 2rgy_A Transcriptional regulat 97.6 0.00046 1.6E-08 70.4 13.2 202 2-224 9-218 (290)
116 3m9w_A D-xylose-binding peripl 97.6 0.0021 7E-08 66.3 18.1 200 2-220 3-213 (313)
117 3o1i_D Periplasmic protein TOR 97.6 0.0016 5.4E-08 66.8 17.2 198 2-220 6-218 (304)
118 3hcw_A Maltose operon transcri 97.6 0.0022 7.4E-08 65.5 18.1 203 3-227 9-224 (295)
119 3kke_A LACI family transcripti 97.6 0.00091 3.1E-08 68.7 15.2 198 3-223 17-225 (303)
120 3jy6_A Transcriptional regulat 97.6 0.0024 8.1E-08 64.5 18.1 204 2-229 8-215 (276)
121 8abp_A L-arabinose-binding pro 97.6 0.0018 6.2E-08 66.4 17.2 211 1-231 2-233 (306)
122 3egc_A Putative ribose operon 97.6 0.00062 2.1E-08 69.4 13.4 208 2-230 9-222 (291)
123 3gyb_A Transcriptional regulat 97.5 0.00031 1.1E-08 71.2 10.6 203 2-230 6-212 (280)
124 3g85_A Transcriptional regulat 97.5 0.00065 2.2E-08 69.2 12.8 203 2-227 12-220 (289)
125 3gv0_A Transcriptional regulat 97.5 0.0012 4.1E-08 67.2 14.8 204 2-226 9-219 (288)
126 2x26_A Periplasmic aliphatic s 97.5 0.00062 2.1E-08 70.1 12.5 117 629-755 99-232 (308)
127 3tb6_A Arabinose metabolism tr 97.5 0.00095 3.2E-08 68.3 13.3 207 3-228 17-234 (298)
128 1jx6_A LUXP protein; protein-l 97.4 0.0028 9.7E-08 66.2 15.9 207 2-228 44-265 (342)
129 2dri_A D-ribose-binding protei 97.4 0.012 4E-07 59.0 19.7 205 3-230 3-215 (271)
130 1gud_A ALBP, D-allose-binding 97.4 0.011 3.9E-07 59.8 19.7 209 2-231 2-228 (288)
131 3bil_A Probable LACI-family tr 97.4 0.0049 1.7E-07 64.6 17.4 200 3-225 68-271 (348)
132 1byk_A Protein (trehalose oper 97.3 0.0076 2.6E-07 59.8 17.7 198 3-230 4-205 (255)
133 3kjx_A Transcriptional regulat 97.2 0.0044 1.5E-07 64.8 15.0 205 3-228 70-280 (344)
134 3ksx_A Nitrate transport prote 97.2 0.0032 1.1E-07 65.3 13.8 90 629-726 125-219 (324)
135 3qk7_A Transcriptional regulat 97.2 0.0039 1.3E-07 63.6 14.0 207 2-230 7-223 (294)
136 3h5o_A Transcriptional regulat 97.2 0.0062 2.1E-07 63.5 15.6 202 3-228 64-272 (339)
137 3e61_A Putative transcriptiona 97.2 0.0041 1.4E-07 62.7 13.8 198 3-228 10-210 (277)
138 2fqx_A Membrane lipoprotein TM 97.1 0.013 4.4E-07 60.4 17.5 210 2-229 5-221 (318)
139 3uug_A Multiple sugar-binding 97.1 0.0064 2.2E-07 63.1 15.0 203 2-222 4-231 (330)
140 1jye_A Lactose operon represso 97.1 0.013 4.6E-07 61.2 17.1 201 2-227 62-270 (349)
141 3uif_A Sulfonate ABC transport 97.1 0.0053 1.8E-07 64.3 13.9 176 451-739 35-227 (348)
142 3huu_A Transcription regulator 97.1 0.0049 1.7E-07 63.2 13.4 203 3-230 24-238 (305)
143 3e3m_A Transcriptional regulat 97.0 0.015 5E-07 61.1 17.2 205 3-227 72-282 (355)
144 3jvd_A Transcriptional regulat 97.0 0.021 7.3E-07 59.2 18.1 192 3-225 66-261 (333)
145 3cs3_A Sugar-binding transcrip 97.0 0.02 6.7E-07 57.6 17.1 196 2-228 9-210 (277)
146 3s99_A Basic membrane lipoprot 96.9 0.03 1E-06 58.3 17.9 200 1-219 26-230 (356)
147 3hs3_A Ribose operon repressor 96.9 0.017 5.8E-07 58.1 15.5 195 2-228 11-211 (277)
148 4fe7_A Xylose operon regulator 96.8 0.03 1E-06 60.1 17.3 205 2-230 26-239 (412)
149 2hqb_A Transcriptional activat 96.7 0.2 6.8E-06 50.7 21.7 194 2-218 6-204 (296)
150 3un6_A Hypothetical protein sa 96.6 0.0078 2.7E-07 62.8 10.5 115 637-756 153-284 (341)
151 3miz_A Putative transcriptiona 96.5 0.0033 1.1E-07 64.3 7.0 197 2-220 14-222 (301)
152 3qsl_A Putative exported prote 96.5 0.025 8.5E-07 58.9 13.6 134 456-702 59-205 (346)
153 3qi7_A Putative transcriptiona 96.3 0.12 4E-06 53.2 16.9 211 1-219 12-249 (371)
154 3ix1_A N-formyl-4-amino-5-amin 96.0 0.018 6.1E-07 58.8 9.3 77 443-529 16-96 (302)
155 3ixl_A Amdase, arylmalonate de 95.7 0.1 3.6E-06 50.7 12.8 128 55-213 56-199 (240)
156 3h5t_A Transcriptional regulat 95.7 0.097 3.3E-06 55.0 13.4 201 3-223 70-296 (366)
157 2k1e_A Water soluble analogue 95.6 0.0098 3.4E-07 49.4 4.1 76 553-632 20-97 (103)
158 2ih3_C Voltage-gated potassium 95.3 0.033 1.1E-06 47.7 6.8 73 554-630 42-116 (122)
159 2f5x_A BUGD; periplasmic bindi 95.2 0.36 1.2E-05 49.0 15.3 108 639-753 140-275 (312)
160 3eff_K Voltage-gated potassium 94.7 0.065 2.2E-06 47.2 7.1 72 554-629 21-94 (139)
161 2qpq_A Protein BUG27; alpha/be 94.6 0.52 1.8E-05 47.6 14.4 85 663-753 159-266 (301)
162 2dvz_A BUGE, putative exported 94.5 0.5 1.7E-05 48.0 14.1 87 663-753 172-279 (314)
163 2a9h_A Voltage-gated potassium 94.4 0.07 2.4E-06 47.7 6.5 75 553-631 64-140 (155)
164 2xed_A Putative maleate isomer 93.7 2.5 8.5E-05 41.8 17.1 120 57-207 82-221 (273)
165 1zbm_A Hypothetical protein AF 93.5 0.26 9E-06 49.3 9.8 96 637-743 102-210 (280)
166 2x7q_A Ca3427, possible thiami 93.2 0.64 2.2E-05 47.5 12.2 98 639-743 119-236 (321)
167 4ab5_A Transcriptional regulat 93.2 2.3 7.9E-05 39.9 15.6 70 447-530 22-91 (222)
168 3ho7_A OXYR; beta-alpha-barrel 93.1 2 6.8E-05 40.8 15.1 70 447-530 25-94 (232)
169 4h33_A LMO2059 protein; bilaye 92.9 0.21 7.3E-06 43.6 6.8 57 576-632 42-100 (137)
170 2dgd_A 223AA long hypothetical 92.4 1.1 3.6E-05 43.1 11.9 77 126-207 99-184 (223)
171 4ddd_A Immunogenic protein; ss 91.9 0.51 1.7E-05 48.4 9.4 78 443-530 44-137 (327)
172 2g29_A Nitrate transport prote 91.8 0.67 2.3E-05 49.4 10.6 101 636-742 153-272 (417)
173 3ldc_A Calcium-gated potassium 91.8 0.38 1.3E-05 37.6 6.3 52 577-628 28-81 (82)
174 3oxn_A Putative transcriptiona 91.6 5.4 0.00018 38.0 16.3 70 447-530 33-102 (241)
175 2q5c_A NTRC family transcripti 91.6 8.6 0.00029 35.7 17.8 157 2-219 5-161 (196)
176 3ouf_A Potassium channel prote 90.4 0.52 1.8E-05 38.2 6.1 58 576-633 31-90 (97)
177 3vou_A ION transport 2 domain 88.9 1 3.4E-05 39.9 7.3 57 577-633 52-110 (148)
178 2q67_A Potassium channel prote 88.9 0.77 2.6E-05 38.5 6.2 56 577-632 49-106 (114)
179 3pjs_K KCSA, voltage-gated pot 88.7 0.047 1.6E-06 49.8 -1.6 59 574-632 64-124 (166)
180 1p7b_A Integral membrane chann 88.4 0.71 2.4E-05 46.9 6.7 58 574-631 93-152 (333)
181 3jv9_A OXYR, transcriptional r 87.5 11 0.00038 34.8 14.6 70 447-530 18-87 (219)
182 4gx0_A TRKA domain protein; me 87.5 1.8 6.2E-05 48.2 10.1 54 576-629 50-106 (565)
183 3s99_A Basic membrane lipoprot 87.2 3.9 0.00013 42.2 11.6 91 3-103 151-241 (356)
184 1xl4_A Inward rectifier potass 85.9 1.3 4.3E-05 44.5 6.8 58 573-630 78-137 (301)
185 1orq_C Potassium channel; volt 85.9 1.5 5E-05 42.0 7.1 72 554-629 146-219 (223)
186 2eq5_A 228AA long hypothetical 85.7 2.8 9.7E-05 40.1 9.1 113 58-206 68-186 (228)
187 3fzv_A Probable transcriptiona 85.4 16 0.00053 36.3 15.2 70 447-530 109-179 (306)
188 1jfl_A Aspartate racemase; alp 85.1 1.9 6.6E-05 41.4 7.5 81 56-168 65-145 (228)
189 2pju_A Propionate catabolism o 84.4 9.6 0.00033 36.2 11.8 128 49-219 46-173 (225)
190 3fxq_A LYSR type regulator of 84.2 11 0.00039 37.4 13.4 72 447-530 106-177 (305)
191 2zzv_A ABC transporter, solute 83.5 12 0.0004 38.7 13.3 63 450-517 54-118 (361)
192 2esn_A Probable transcriptiona 83.1 19 0.00065 35.7 14.6 73 447-530 115-187 (310)
193 1us5_A Putative GLUR0 ligand b 82.8 5.1 0.00017 40.3 10.1 56 629-691 125-187 (314)
194 2y7p_A LYSR-type regulatory pr 82.4 18 0.00061 33.7 13.3 70 447-530 22-91 (218)
195 1i6a_A OXYR, hydrogen peroxide 82.2 16 0.00054 34.0 12.9 70 447-530 19-88 (219)
196 2fqx_A Membrane lipoprotein TM 81.4 16 0.00055 36.8 13.2 122 3-136 131-264 (318)
197 2hxr_A HTH-type transcriptiona 80.3 39 0.0013 31.6 18.1 70 447-530 44-113 (238)
198 1atg_A MODA, periplasmic molyb 80.1 14 0.00049 34.5 11.9 71 449-530 15-91 (231)
199 3beh_A MLL3241 protein; transm 78.7 1.9 6.4E-05 44.7 5.1 72 554-629 142-215 (355)
200 3ox4_A Alcohol dehydrogenase 2 78.7 2.8 9.5E-05 43.9 6.4 91 123-215 19-111 (383)
201 2ql3_A Probable transcriptiona 78.4 35 0.0012 31.1 13.8 69 447-529 19-87 (209)
202 1lnq_A MTHK channels, potassiu 78.3 1.2 4.2E-05 45.7 3.5 57 577-633 45-103 (336)
203 2fyi_A HTH-type transcriptiona 77.7 45 0.0015 31.0 15.9 71 447-530 28-98 (228)
204 2i49_A Bicarbonate transporter 77.2 6.1 0.00021 42.0 8.7 99 638-742 161-280 (429)
205 3s81_A Putative aspartate race 76.7 1.4 4.9E-05 43.3 3.2 42 54-97 87-128 (268)
206 2zsk_A PH1733, 226AA long hypo 74.9 8.8 0.0003 36.5 8.4 79 58-168 66-144 (226)
207 2pfy_A Putative exported prote 74.8 28 0.00096 34.6 12.6 64 450-518 22-86 (301)
208 2hzl_A Trap-T family sorbitol/ 74.6 22 0.00076 36.6 12.0 53 450-507 53-105 (365)
209 2qks_A KIR3.1-prokaryotic KIR 74.3 5.7 0.0002 40.1 7.0 56 576-631 77-134 (321)
210 2hqb_A Transcriptional activat 72.5 19 0.00065 35.8 10.6 119 3-137 128-248 (296)
211 2pfz_A Putative exported prote 72.3 29 0.00098 34.6 11.8 63 450-517 21-84 (301)
212 1al3_A Cys regulon transcripti 72.2 81 0.0028 31.3 16.3 71 447-530 107-177 (324)
213 2gzm_A Glutamate racemase; enz 72.0 6.3 0.00021 38.7 6.6 120 56-205 56-187 (267)
214 3bfj_A 1,3-propanediol oxidore 71.9 11 0.00037 39.4 8.8 88 125-213 23-113 (387)
215 2oho_A Glutamate racemase; iso 71.6 6.7 0.00023 38.7 6.8 117 59-205 67-195 (273)
216 4esw_A Pyrimidine biosynthesis 71.4 16 0.00054 37.3 10.0 55 637-696 110-168 (342)
217 2dwu_A Glutamate racemase; iso 70.4 22 0.00074 35.0 10.2 129 54-213 58-200 (276)
218 2r9r_B Paddle chimera voltage 70.2 7.2 0.00025 42.5 7.2 55 574-628 372-428 (514)
219 1o2d_A Alcohol dehydrogenase, 69.9 13 0.00046 38.4 9.0 87 124-212 30-118 (371)
220 3ist_A Glutamate racemase; str 68.7 8.6 0.00029 37.7 6.7 127 56-212 58-197 (269)
221 1uth_A LYSR-type regulatory pr 67.7 44 0.0015 33.2 12.3 70 447-530 119-188 (315)
222 1rrm_A Lactaldehyde reductase; 67.4 5.8 0.0002 41.5 5.5 89 125-215 21-111 (386)
223 1vlj_A NADH-dependent butanol 66.7 11 0.00039 39.5 7.7 88 124-212 32-121 (407)
224 3r26_A Molybdate-binding perip 66.4 70 0.0024 30.2 12.9 70 449-529 22-97 (237)
225 1b73_A Glutamate racemase; iso 66.2 15 0.00052 35.6 8.0 121 54-205 51-181 (254)
226 2jfn_A Glutamate racemase; cel 65.5 31 0.001 34.1 10.1 121 54-205 72-207 (285)
227 2jfq_A Glutamate racemase; cel 64.6 25 0.00086 34.7 9.3 121 55-205 74-207 (286)
228 1mkz_A Molybdenum cofactor bio 64.3 23 0.00077 31.9 8.2 67 133-202 8-77 (172)
229 2vvt_A Glutamate racemase; iso 63.8 20 0.00068 35.6 8.4 129 55-213 76-217 (290)
230 1zuw_A Glutamate racemase 1; ( 63.2 19 0.00063 35.4 8.0 130 54-212 54-196 (272)
231 3onm_A Transcriptional regulat 62.2 1E+02 0.0034 28.7 16.1 68 447-530 41-108 (238)
232 3hn0_A Nitrate transport prote 59.0 33 0.0011 33.8 9.1 60 637-701 95-160 (283)
233 3ukm_A Potassium channel subfa 58.7 15 0.00052 36.0 6.2 59 576-634 200-267 (280)
234 2h9b_A HTH-type transcriptiona 58.5 1.4E+02 0.0048 29.2 16.7 69 447-529 104-172 (312)
235 3uhj_A Probable glycerol dehyd 58.5 12 0.00042 38.9 5.9 75 125-205 43-117 (387)
236 3hhf_B Transcriptional regulat 58.0 94 0.0032 28.0 11.9 65 447-528 21-85 (213)
237 3lr1_A Tungstate ABC transport 57.7 9.2 0.00031 36.6 4.4 75 446-531 19-96 (236)
238 3m9w_A D-xylose-binding peripl 56.9 22 0.00075 35.4 7.6 79 136-219 3-84 (313)
239 1ixc_A CBNR, LYSR-type regulat 54.2 1.6E+02 0.0053 28.4 16.6 69 447-529 105-173 (294)
240 3ce9_A Glycerol dehydrogenase; 53.7 32 0.0011 35.3 8.2 83 125-212 24-108 (354)
241 3muq_A Uncharacterized conserv 53.7 15 0.00052 35.1 5.3 74 446-530 19-95 (237)
242 1nh8_A ATP phosphoribosyltrans 52.2 62 0.0021 31.9 9.3 94 637-742 128-225 (304)
243 3ojc_A Putative aspartate/glut 51.7 4.3 0.00015 38.9 1.0 81 56-168 67-148 (231)
244 3um7_A Potassium channel subfa 51.6 14 0.00047 36.9 4.7 53 577-629 115-169 (309)
245 3l49_A ABC sugar (ribose) tran 50.6 28 0.00096 34.1 7.1 79 136-219 6-87 (291)
246 3jy6_A Transcriptional regulat 50.2 43 0.0015 32.5 8.3 79 134-219 6-86 (276)
247 1y5e_A Molybdenum cofactor bio 49.3 52 0.0018 29.4 7.9 67 133-202 11-80 (169)
248 2h98_A HTH-type transcriptiona 49.3 2E+02 0.0068 28.2 17.1 69 447-529 104-172 (313)
249 2fp4_A Succinyl-COA ligase [GD 48.9 1.7E+02 0.006 28.9 12.4 144 49-216 79-234 (305)
250 3out_A Glutamate racemase; str 48.7 31 0.0011 33.6 6.7 39 56-96 60-99 (268)
251 2is8_A Molybdopterin biosynthe 48.4 37 0.0013 30.2 6.7 63 137-202 3-70 (164)
252 4dik_A Flavoprotein; TM0755, e 48.0 62 0.0021 33.8 9.4 93 136-234 266-365 (410)
253 2l82_A Designed protein OR32; 47.8 1E+02 0.0035 24.4 9.3 88 121-219 13-104 (162)
254 1jq5_A Glycerol dehydrogenase; 46.4 33 0.0011 35.4 6.9 83 125-212 22-106 (370)
255 3gbv_A Putative LACI-family tr 46.2 48 0.0016 32.5 8.1 85 133-219 6-95 (304)
256 3h75_A Periplasmic sugar-bindi 46.2 27 0.00094 35.5 6.3 80 135-219 3-87 (350)
257 1twy_A ABC transporter, peripl 45.4 33 0.0011 33.4 6.6 71 448-530 42-114 (290)
258 3dmy_A Protein FDRA; predicted 45.2 3E+02 0.01 29.2 14.1 144 49-218 44-198 (480)
259 2l69_A Rossmann 2X3 fold prote 45.0 74 0.0025 24.4 6.6 39 108-149 27-65 (134)
260 2jfz_A Glutamate racemase; cel 44.7 65 0.0022 31.0 8.4 39 57-97 54-92 (255)
261 3uhf_A Glutamate racemase; str 44.4 99 0.0034 30.1 9.5 36 60-96 80-115 (274)
262 3l6u_A ABC-type sugar transpor 44.3 37 0.0013 33.2 6.8 81 134-219 7-90 (293)
263 3tb6_A Arabinose metabolism tr 43.9 45 0.0016 32.6 7.4 79 136-219 16-100 (298)
264 3kos_A HTH-type transcriptiona 43.9 1.8E+02 0.0062 26.2 14.4 94 642-742 108-205 (219)
265 1sw5_A Osmoprotection protein 43.2 2E+02 0.007 27.7 12.0 80 652-741 156-238 (275)
266 3g1w_A Sugar ABC transporter; 42.5 27 0.00094 34.5 5.5 80 136-219 5-87 (305)
267 2nr1_A NR1 M2, M2; receptor, s 42.1 10 0.00034 21.8 1.1 18 576-593 7-24 (27)
268 3r7f_A Aspartate carbamoyltran 41.8 86 0.0029 31.1 8.7 134 3-170 38-179 (304)
269 3uug_A Multiple sugar-binding 41.7 41 0.0014 33.7 6.7 79 136-219 4-85 (330)
270 3o74_A Fructose transport syst 41.7 21 0.0007 34.7 4.3 79 136-219 3-83 (272)
271 3cvg_A Putative metal binding 38.9 28 0.00097 34.5 4.8 73 447-530 34-116 (294)
272 3dbi_A Sugar-binding transcrip 38.7 57 0.0019 32.8 7.3 85 130-219 56-144 (338)
273 2czl_A Hypothetical protein TT 38.6 61 0.0021 31.3 7.2 55 637-696 95-150 (272)
274 2pjk_A 178AA long hypothetical 38.5 85 0.0029 28.2 7.5 67 133-202 13-89 (178)
275 2fn9_A Ribose ABC transporter, 38.5 44 0.0015 32.6 6.3 79 136-219 3-84 (290)
276 4ecf_A ABC-type phosphate tran 38.1 59 0.002 31.5 7.0 72 448-530 18-92 (264)
277 3brq_A HTH-type transcriptiona 37.9 61 0.0021 31.6 7.3 84 130-219 14-102 (296)
278 4h31_A Otcase, ornithine carba 37.5 2.2E+02 0.0075 28.9 11.2 132 3-170 72-212 (358)
279 1xs5_A 29 kDa protein, membran 37.5 2.7E+02 0.0091 26.3 11.3 36 452-497 21-56 (241)
280 3kke_A LACI family transcripti 37.3 52 0.0018 32.4 6.6 85 129-219 9-95 (303)
281 3pzy_A MOG; ssgcid, seattle st 36.4 38 0.0013 30.2 4.7 63 136-202 8-74 (164)
282 8abp_A L-arabinose-binding pro 36.2 64 0.0022 31.7 7.1 78 136-219 3-83 (306)
283 3qvl_A Putative hydantoin race 35.9 1.9E+02 0.0065 27.5 10.0 85 2-97 2-97 (245)
284 3rfq_A Pterin-4-alpha-carbinol 35.8 72 0.0025 29.0 6.5 65 135-202 30-97 (185)
285 2fvy_A D-galactose-binding per 35.2 66 0.0022 31.6 7.0 79 136-219 3-85 (309)
286 3ukm_A Potassium channel subfa 35.2 38 0.0013 33.2 4.8 53 576-628 92-146 (280)
287 3k4h_A Putative transcriptiona 34.9 47 0.0016 32.4 5.8 81 133-219 6-93 (292)
288 3iwt_A 178AA long hypothetical 34.9 95 0.0033 27.8 7.3 63 137-202 17-89 (178)
289 4exl_A PBP 1, phosphate-bindin 34.8 88 0.003 30.3 7.6 70 449-530 19-92 (265)
290 3d02_A Putative LACI-type tran 34.6 57 0.0019 32.0 6.4 80 136-219 5-87 (303)
291 2iks_A DNA-binding transcripti 34.2 40 0.0014 33.0 5.1 85 130-219 15-101 (293)
292 2g2c_A Putative molybdenum cof 33.7 58 0.002 29.0 5.5 63 137-202 7-77 (167)
293 1jx6_A LUXP protein; protein-l 33.6 81 0.0028 31.6 7.5 81 136-219 44-129 (342)
294 3gd5_A Otcase, ornithine carba 33.2 2.9E+02 0.01 27.5 11.0 132 3-170 50-187 (323)
295 1ta9_A Glycerol dehydrogenase; 33.1 72 0.0025 33.8 7.0 76 125-205 81-156 (450)
296 2de3_A Dibenzothiophene desulf 33.1 1.3E+02 0.0045 30.7 9.0 77 672-755 210-299 (365)
297 1tjy_A Sugar transport protein 32.3 32 0.0011 34.4 4.0 80 136-219 4-86 (316)
298 2x7x_A Sensor protein; transfe 31.8 94 0.0032 30.9 7.6 81 134-219 5-88 (325)
299 3um7_A Potassium channel subfa 31.7 56 0.0019 32.5 5.5 53 577-629 224-284 (309)
300 3tsm_A IGPS, indole-3-glycerol 31.7 2.3E+02 0.0077 27.5 9.7 87 123-219 81-170 (272)
301 1h3d_A ATP-phosphoribosyltrans 31.6 2.8E+02 0.0094 27.3 10.3 94 637-742 123-219 (299)
302 3kjx_A Transcriptional regulat 30.9 1.2E+02 0.004 30.5 8.2 78 136-219 69-148 (344)
303 3kbq_A Protein TA0487; structu 30.9 76 0.0026 28.4 5.7 62 137-202 5-70 (172)
304 2fep_A Catabolite control prot 30.9 68 0.0023 31.3 6.2 79 135-219 16-96 (289)
305 3dnf_A ISPH, LYTB, 4-hydroxy-3 30.7 2E+02 0.0069 28.2 9.0 53 42-95 186-239 (297)
306 3huu_A Transcription regulator 30.6 39 0.0013 33.4 4.4 86 128-219 15-107 (305)
307 3tpf_A Otcase, ornithine carba 30.6 3.4E+02 0.012 26.8 10.9 131 3-170 38-176 (307)
308 3jzd_A Iron-containing alcohol 30.1 61 0.0021 33.2 5.7 76 124-205 25-100 (358)
309 3rot_A ABC sugar transporter, 30.1 37 0.0013 33.4 4.0 81 136-219 4-87 (297)
310 3mz1_A Putative transcriptiona 29.8 2.4E+02 0.0082 26.9 10.2 73 662-742 215-289 (300)
311 4a8p_A Putrescine carbamoyltra 29.8 4.5E+02 0.015 26.5 13.0 132 3-170 43-183 (355)
312 3jvd_A Transcriptional regulat 29.8 3.7E+02 0.013 26.5 11.7 115 3-131 176-298 (333)
313 3hl0_A Maleylacetate reductase 29.5 85 0.0029 32.0 6.6 76 124-205 23-98 (353)
314 3k9c_A Transcriptional regulat 29.5 1E+02 0.0034 30.0 7.1 81 130-219 7-89 (289)
315 3i42_A Response regulator rece 29.2 1E+02 0.0034 25.1 6.2 58 151-218 14-73 (127)
316 4a8t_A Putrescine carbamoyltra 29.1 4.5E+02 0.015 26.3 12.4 128 3-170 65-205 (339)
317 3cg4_A Response regulator rece 29.0 2.4E+02 0.0082 23.2 11.3 57 151-217 18-76 (142)
318 1ml4_A Aspartate transcarbamoy 29.0 4.3E+02 0.015 26.1 12.6 47 121-170 135-187 (308)
319 3kn3_A Putative periplasmic pr 28.9 55 0.0019 31.2 4.7 74 446-530 19-95 (242)
320 3h5o_A Transcriptional regulat 28.8 1.1E+02 0.0036 30.7 7.4 81 133-219 60-142 (339)
321 4gd5_A Phosphate ABC transport 28.6 77 0.0026 30.9 6.1 50 482-531 75-124 (279)
322 1oj7_A Hypothetical oxidoreduc 28.4 59 0.002 34.0 5.3 83 125-212 42-126 (408)
323 3gt7_A Sensor protein; structu 27.9 1.2E+02 0.0042 25.8 6.7 58 151-218 18-77 (154)
324 1nrz_A PTS system, sorbose-spe 27.7 1.7E+02 0.0057 25.9 7.3 79 123-211 15-93 (164)
325 3p6l_A Sugar phosphate isomera 27.0 1.8E+02 0.0062 27.6 8.5 93 124-219 25-129 (262)
326 3c3k_A Alanine racemase; struc 26.6 1.7E+02 0.006 28.1 8.3 79 134-219 7-87 (285)
327 3gl9_A Response regulator; bet 26.5 1E+02 0.0035 25.0 5.7 70 151-230 13-84 (122)
328 3lte_A Response regulator; str 26.5 1.2E+02 0.0041 24.8 6.2 58 151-218 17-76 (132)
329 1y81_A Conserved hypothetical 26.4 46 0.0016 28.5 3.4 35 194-231 69-103 (138)
330 2rjo_A Twin-arginine transloca 26.4 71 0.0024 32.0 5.5 79 136-219 6-89 (332)
331 1vsq_C Mannose-specific phosph 26.4 1.7E+02 0.0058 25.9 7.1 80 123-212 18-97 (165)
332 3hs3_A Ribose operon repressor 26.1 77 0.0026 30.6 5.5 69 129-202 4-75 (277)
333 2dri_A D-ribose-binding protei 26.1 93 0.0032 29.8 6.1 79 136-219 2-83 (271)
334 2yxb_A Coenzyme B12-dependent 25.9 3.2E+02 0.011 23.9 9.0 86 136-230 19-108 (161)
335 3egc_A Putative ribose operon 25.9 45 0.0015 32.6 3.7 80 134-219 7-88 (291)
336 2ioy_A Periplasmic sugar-bindi 25.7 80 0.0027 30.6 5.6 79 136-219 2-83 (283)
337 2h3h_A Sugar ABC transporter, 25.7 70 0.0024 31.6 5.2 79 137-219 3-83 (313)
338 1i4n_A Indole-3-glycerol phosp 25.2 2.7E+02 0.0092 26.6 8.8 85 124-219 64-151 (251)
339 3to5_A CHEY homolog; alpha(5)b 25.0 1.2E+02 0.0041 25.7 5.8 79 139-230 15-95 (134)
340 3lua_A Response regulator rece 25.0 1.2E+02 0.004 25.3 5.9 56 151-216 15-75 (140)
341 2l69_A Rossmann 2X3 fold prote 25.0 2.3E+02 0.008 21.7 8.2 72 151-232 13-86 (134)
342 3gv0_A Transcriptional regulat 24.5 91 0.0031 30.3 5.7 81 133-219 6-90 (288)
343 2hsg_A Glucose-resistance amyl 24.4 91 0.0031 31.1 5.9 79 135-219 60-140 (332)
344 1jlj_A Gephyrin; globular alph 24.2 1.8E+02 0.006 26.4 7.1 70 130-202 9-86 (189)
345 3cs3_A Sugar-binding transcrip 24.1 4E+02 0.014 25.2 10.5 78 3-91 120-200 (277)
346 3ksm_A ABC-type sugar transpor 23.9 58 0.002 31.3 4.1 80 137-219 2-85 (276)
347 3e61_A Putative transcriptiona 23.7 90 0.0031 30.0 5.5 78 134-219 7-87 (277)
348 3d8u_A PURR transcriptional re 23.5 82 0.0028 30.2 5.1 78 136-219 4-83 (275)
349 3kto_A Response regulator rece 23.5 1.3E+02 0.0043 24.9 5.8 58 151-218 17-78 (136)
350 2vvr_A Ribose-5-phosphate isom 23.4 2.4E+02 0.0082 24.4 7.2 116 144-272 8-125 (149)
351 3gzg_A Molybdate-binding perip 23.2 72 0.0025 30.6 4.5 71 449-530 38-114 (253)
352 3lfj_A Manxb, phosphotransfera 23.0 1.5E+02 0.0052 26.8 6.2 80 123-212 36-115 (187)
353 3hp4_A GDSL-esterase; psychrot 22.8 3.8E+02 0.013 23.3 10.2 81 136-218 3-103 (185)
354 4dik_A Flavoprotein; TM0755, e 22.7 6.4E+02 0.022 25.9 17.8 55 133-189 350-404 (410)
355 4a29_A Engineered retro-aldol 22.6 4.1E+02 0.014 25.4 9.3 83 126-219 69-154 (258)
356 3e3m_A Transcriptional regulat 22.5 1.3E+02 0.0045 30.2 6.7 81 133-219 68-150 (355)
357 3o1l_A Formyltetrahydrofolate 22.4 2.8E+02 0.0096 27.3 8.6 99 66-170 23-138 (302)
358 3bil_A Probable LACI-family tr 22.3 1.3E+02 0.0044 30.3 6.5 78 136-219 67-146 (348)
359 2ks1_B Epidermal growth factor 22.1 1.1E+02 0.0039 20.2 3.7 13 795-807 27-39 (44)
360 3f6p_A Transcriptional regulat 21.6 2E+02 0.0068 23.0 6.6 57 151-217 13-71 (120)
361 2qxy_A Response regulator; reg 21.5 2.3E+02 0.0078 23.3 7.2 58 151-218 15-73 (142)
362 1jye_A Lactose operon represso 21.2 1.6E+02 0.0054 29.6 7.0 65 134-202 60-126 (349)
363 3eye_A PTS system N-acetylgala 21.2 1.8E+02 0.0061 25.8 6.2 79 123-212 20-99 (168)
364 2pbq_A Molybdenum cofactor bio 21.1 1.6E+02 0.0055 26.4 6.1 62 137-202 7-76 (178)
365 1vlv_A Otcase, ornithine carba 21.0 6.2E+02 0.021 25.1 11.3 132 3-170 60-198 (325)
366 3t6k_A Response regulator rece 20.9 1.2E+02 0.0042 25.1 5.2 58 151-218 15-74 (136)
367 3lft_A Uncharacterized protein 20.8 5.6E+02 0.019 24.5 11.2 109 3-130 135-247 (295)
368 3grc_A Sensor protein, kinase; 20.8 95 0.0033 25.8 4.4 67 136-217 7-75 (140)
369 3clk_A Transcription regulator 20.8 1E+02 0.0035 29.9 5.2 80 135-219 8-89 (290)
370 3cnb_A DNA-binding response re 20.8 2.5E+02 0.0084 23.0 7.2 58 151-217 19-79 (143)
371 3qk7_A Transcriptional regulat 20.7 1E+02 0.0035 30.0 5.2 79 134-219 5-89 (294)
372 1pg5_A Aspartate carbamoyltran 20.7 1.2E+02 0.0043 29.8 5.6 131 3-170 40-182 (299)
373 2rgy_A Transcriptional regulat 20.7 79 0.0027 30.8 4.4 80 134-219 7-91 (290)
374 3mwd_B ATP-citrate synthase; A 20.6 4.5E+02 0.015 26.3 9.8 80 134-219 167-250 (334)
375 3kht_A Response regulator; PSI 20.5 3.6E+02 0.012 22.2 10.2 72 151-230 16-89 (144)
376 1ixh_A Phosphate-binding prote 20.5 87 0.003 31.3 4.6 69 450-529 18-87 (321)
377 3rf7_A Iron-containing alcohol 20.5 1.9E+02 0.0065 29.6 7.2 75 125-205 40-120 (375)
378 3umf_A Adenylate kinase; rossm 20.3 31 0.0011 32.4 1.1 60 60-132 24-84 (217)
379 2vk2_A YTFQ, ABC transporter p 20.2 86 0.0029 30.8 4.6 79 136-219 3-84 (306)
380 1uuy_A CNX1, molybdopterin bio 20.1 2.3E+02 0.008 24.9 6.9 64 136-202 6-79 (167)
381 1ble_A Fructose permease; phos 20.1 1.9E+02 0.0064 25.6 6.1 79 123-211 16-94 (163)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=5e-93 Score=853.60 Aligned_cols=739 Identities=18% Similarity=0.286 Sum_probs=615.5
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKG-DPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~-~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
+||||+++|++|+ ..+.|+++|+++||+++ ++|++++.|+++ ++..|.+++|+++++ +|.|||||. +|.+
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~~-~V~aiiG~~-~S~~ 72 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFY-DKKS 72 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC-CTTT
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHhc-CcEEEEcCC-ChhH
Confidence 5899999999997 78999999999999987 799999999998 999999999999987 899999999 9999
Q ss_pred HHHHHHhcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 157 (808)
+.+++++++.++||+|+++ .+. ++. ++||+.|+ . +.++++++++|||++|++|| |++||. ...+.+.
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~-~~~~~~~~r~~p~-~-----~~a~~~l~~~~gw~~v~ii~-d~~~g~-~~~~~~~ 141 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPT-DGTHPFVIQMRPD-L-----KGALLSLIEYYQWDKFAYLY-DSDRGL-STLQAVL 141 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCC-SSCCSSEEECSCC-C-----HHHHHHHHHHTTCSEEEEEE-CGGGCT-HHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCC-CCCCceEEEeCCC-H-----HHHHHHHHHHCCCCEEEEEE-eCChhH-HHHHHHH
Confidence 9999999999999999984 344 443 99999988 5 68999999999999999999 778899 9999999
Q ss_pred HhhhcCCcEEEEEEecCCCC--CChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 047109 158 DSLHDNDIDIARRITISMSS--NTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNF 235 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 235 (808)
+.+++.|+||+..+.++. . .+..|+..++++++++++|+|++++..+++..++++|+++||..++++||.++.+...
T Consensus 142 ~~~~~~g~~v~~~~~~~~-~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 220 (823)
T 3kg2_A 142 DSAAEKKWQVTAINVGNI-NNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 220 (823)
T ss_dssp HHHHHTTCEEEEEECSSC-CSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSS
T ss_pred HHhhccCCceEEEEeecC-CCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccc
Confidence 999999999999887765 2 1267899999999999999999999999999999999999998889999999864433
Q ss_pred cccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh----
Q 047109 236 LHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE---- 311 (808)
Q Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~---- 311 (808)
.+. ...... ..+++++..+.++.+.+++|.++|++.+++.+++.....++.+++++||||+++|+|+++++.+
T Consensus 221 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~ 297 (823)
T 3kg2_A 221 GDL--LKIQFG-GAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEI 297 (823)
T ss_dssp SCC--SSSSSS-BCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cch--HHhhcC-CCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 222 122222 5678889888888999999999999998887665554557788999999999999999998742
Q ss_pred ----------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCCccccc
Q 047109 312 ----------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRITKEMN 374 (808)
Q Consensus 312 ----------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~~~~~ 374 (808)
..+|.++.++|++++|+|++|++.| ++|++... .|+|+++++++++.||.|++..++.....
T Consensus 298 ~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~I~~~~~~g~~~vg~w~~~~g~~~~~~ 376 (823)
T 3kg2_A 298 SRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMVLTED 376 (823)
T ss_dssp CCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSC-EEEEEEECSSCEEEEEEEETTTEEEECCC
T ss_pred ccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCccccc-EEEEEEEcCCCCeeEEEEcCCCCceeccC
Confidence 1267899999999999999999999 99999987 89999999999999999998776432221
Q ss_pred ccccccccCCCCCCCCCCCCceeEcCCCCccCCCccCCCCeEEEEeecCCccceEEEeeCC---CCCCccceEEEEeHHH
Q 047109 375 SSVFINKMDNISSSSPNGELEAIIWPGGSVAIPVGSGKINKLRIGVPVNGHIEFVHVVRDP---QSVNATLIVKGFCVDV 451 (808)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~l~v~~~~~~~~p~~~~~~~~---~~~~~~~~~~G~~~dl 451 (808)
. ..+. ++++++|++. .++||.+...+. .++ +++.|+|+||
T Consensus 377 ~-------------------------------~~~~-~~~~l~v~~~--~~~P~~~~~~~~~~~~~~---~~~~G~~~dl 419 (823)
T 3kg2_A 377 D-------------------------------TSGL-EQKTVVVTTI--LESPYVMMKANHAALAGN---ERYEGYCVDL 419 (823)
T ss_dssp C-------------------------------CSSC-CCCCEEEEEC--CCTTTSEECTTGGGCCGG---GGEESHHHHH
T ss_pred c-------------------------------cccc-CCCEEEEEEe--cCCCcEEEecCccccCCC---CceEEEHHHH
Confidence 0 0011 5789999987 578898864321 233 7899999999
Q ss_pred HHHHHHHCCCceeEEEEecCCCCC---CCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecC
Q 047109 452 FKAAIDSLTFEVPYEFIPFEDPNG---RMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTD 528 (808)
Q Consensus 452 ~~~ia~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~ 528 (808)
++++++++||+++++.++.+ .+| ..||+|++++++|.+|++|++++++++|++|.+.+|||.||+..+.++++|++
T Consensus 420 ~~~~a~~l~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~ 498 (823)
T 3kg2_A 420 AAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKP 498 (823)
T ss_dssp HHHHHHHHTCCEEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECC
T ss_pred HHHHHHHcCCcEEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECC
Confidence 99999999998888776643 344 26789999999999999999999999999999999999999999999999998
Q ss_pred CC-C-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCC--------------CcchhhHHHHHHHHhhhc
Q 047109 529 RN-N-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSP--------------AHQFGMIFWYSFSTLVFS 592 (808)
Q Consensus 529 ~~-~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~ 592 (808)
.+ . +++.|+.||++.+|++++++++++++++|+++|+.+.+|..+. ..++.+++|++++++++|
T Consensus 499 ~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 578 (823)
T 3kg2_A 499 QKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQ 578 (823)
T ss_dssp CCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC-
T ss_pred CcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhc
Confidence 53 3 8899999999999999999999999999999998766554322 135779999999999988
Q ss_pred Cc-cccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhh-------hc---cCCceeeecCCcHHHhhhccCCCc-
Q 047109 593 QR-EKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIK-------LA---SRDNIGSQLGSFVPGALSNLNFKD- 660 (808)
Q Consensus 593 ~~-~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~-------~~---~~~~i~~~~~s~~~~~l~~~~~~~- 660 (808)
+. ..|++.++|+++++||+|+||++++|+|+|+|+||.++++ ++ ...++++..++....++++.....
T Consensus 579 g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 658 (823)
T 3kg2_A 579 GADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVF 658 (823)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHH
T ss_pred CCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHH
Confidence 84 4789999999999999999999999999999999987765 11 223567777777777776533221
Q ss_pred ----------ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCCC
Q 047109 661 ----------SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSPL 729 (808)
Q Consensus 661 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp~ 729 (808)
.....+++.+++++.+.+ .++.+|++.+....+|+.++. | +++.+++.+. ..++++++||||||
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~y~~~~~~c-~l~~v~~~~~-~~~~~~~~~k~spl 733 (823)
T 3kg2_A 659 DKMWTYMRSAEPSVFVRTTAEGVARVRK---SKGKYAYLLESTMNEYIEQRKPC-DTMKVGGNLD-SKGYGIATPKGSSL 733 (823)
T ss_dssp HHHHHHHHHCSSCCCBSSHHHHHHHHHT---TTTSEEEEEEHHHHHHHHTSTTC-CEEEESCCSS-CEEECCEEETTCSS
T ss_pred HHHHHHHHhcCCccccCCHHHHHHHHhc---cCCceEEEechHHHHHHHhcCCC-ceEEcccccc-ccceeEeecCCChH
Confidence 011235688899998851 223689999999999888776 8 7999999999 99999999999999
Q ss_pred hHHHHHHHHhhhhcCchHHHHHHhcCCCCCCccccCCCCCCcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047109 730 VHDISRAIAKLREEGTLRKIEIEWFNDQQSSFMHVDSTSNNPSSLSLTNFGGLFLITGISSTLALVAFLVSSIHKKRP 807 (808)
Q Consensus 730 ~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~g~f~ll~~g~~la~~vf~~E~~~~~~~ 807 (808)
++.||++|++++|+|++++|.++|+.+.+.|.........+..+|+++++.|+|++|++|+++|+++|++|+++++|+
T Consensus 734 ~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~ 811 (823)
T 3kg2_A 734 GTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRA 811 (823)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 999999999999999999999999988889987333333566799999999999999999999999999999998764
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.1e-47 Score=417.13 Aligned_cols=348 Identities=14% Similarity=0.253 Sum_probs=304.9
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCC-cc-eEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTH-YK-TRLVLHSRDSKG-DPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~-l~-~~l~~~~~d~~~-~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+ ..+.|+++|+++||+++++ ++ ++|++++.|++| ||.+|++++|+|+++ +|.|||||. +|
T Consensus 5 ~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~-~S 79 (389)
T 3o21_A 5 TISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFY-DQ 79 (389)
T ss_dssp EEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECC-CT
T ss_pred eeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEeCC-Ch
Confidence 5899999999997 7899999999999999998 56 999999999987 999999999999988 999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPY 155 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 155 (808)
.++.+++++++.++||+|+++. |. ++. +.||+.|+ . +.+++++++++||++|++|| |++||. ...+.
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~-~~~~~~~~~~~p~-~-----~~a~~~~~~~~gw~~vaii~-d~~~g~-~~~~~ 148 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PT-DADVQFVIQMRPA-L-----KGAILSLLSYYKWEKFVYLY-DTERGF-SVLQA 148 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CC-SSCCSSEEECSCC-S-----HHHHHHHHHHHTCCEEEEEE-CSTTCS-HHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CC-ccCCceEEEEccC-H-----HHHHHHHHHhCCCCEEEEEE-cCcHHH-HHHHH
Confidence 9999999999999999999864 45 544 88888876 5 78999999999999999999 789999 99999
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNF 235 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 235 (808)
+.+.+++.|+||+..+.++. .+..|+..+|++|+++++|+|++++..+++..++++++++||+.++|+||+++.+...
T Consensus 149 ~~~~~~~~g~~v~~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~ 226 (389)
T 3o21_A 149 IMEAAVQNNWQVTARSVGNI--KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTD 226 (389)
T ss_dssp HHHHHHHTTCEEEEEECTTC--CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGG
T ss_pred HHHHhhcCCCeEEEEEecCC--CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccc
Confidence 99999999999998876653 1446899999999999999999999999999999999999998889999998866543
Q ss_pred cccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhh-----
Q 047109 236 LHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKT----- 310 (808)
Q Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~----- 310 (808)
.+. ...... ..+++++....+++|.+++|.++|++.+++++|+.....++.+++++||||+++|+|+++++.
T Consensus 227 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~ 303 (389)
T 3o21_A 227 ILL--ERVMHG-GANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDV 303 (389)
T ss_dssp CCC--HHHHHT-TCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccH--HHHhcC-CcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 322 122233 568888888888899999999999998887665443334677899999999999999999873
Q ss_pred --------h-------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCCc
Q 047109 311 --------E-------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRIT 370 (808)
Q Consensus 311 --------~-------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~ 370 (808)
| +.+|.+|.++|++++|+|++|++.| ++|++... .|+|++++++|+++||.|++..++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~g~~ 378 (389)
T 3o21_A 304 SRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNY-TIDVYEMKVSGSRKAGYWNEYERFV 378 (389)
T ss_dssp C-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSC-CEEEEEEETTEEEEEEEEETTTEEE
T ss_pred ccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccc-eEEEEEEcCCCceeeeEEcCCCCcc
Confidence 1 1257889999999999999999999 99999877 9999999999999999999988764
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.1e-46 Score=428.35 Aligned_cols=392 Identities=18% Similarity=0.265 Sum_probs=327.6
Q ss_pred CeEEEEEEecCCc-------------chhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhhh---
Q 047109 1 EVHVGVILDMRSW-------------AGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLMQ--- 63 (808)
Q Consensus 1 ~i~IG~i~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li~--- 63 (808)
+|+||+++|++|. .|.+...|+++|+++||++++++| ++|+++++|+++++..|++++.++++
T Consensus 14 ~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~~~ 93 (555)
T 2e4u_A 14 DLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASL 93 (555)
T ss_dssp SEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhCcC
Confidence 5899999999875 277888999999999999999997 99999999999999999999998885
Q ss_pred ---------------------cCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCc
Q 047109 64 ---------------------NVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDE 117 (808)
Q Consensus 64 ---------------------~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~ 117 (808)
+++|.|||||. +|.++.+++.+++.+++|+|+++++++. |++ +|||+.|++.
T Consensus 94 ~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~-~S~~s~~va~~~~~~~iP~Is~~a~~~~-lsd~~~~p~~fr~~p~d~ 171 (555)
T 2e4u_A 94 TKVDEAEYMCPDGSYAIQENIPLLIAGVIGGS-YSSVSIQVANLLRLFQIPQISYASTSAK-LSDKSRYDYFARTVPPDF 171 (555)
T ss_dssp --------------------CCCCEEEEEECS-SHHHHHHHHHHHGGGTCCEEESSCCCGG-GGCTTTCTTEEESSCCHH
T ss_pred cccCCCCcccCCCccccccccCCceEEEECCC-CcHHHHHHHHHHhCcCCceEeCCcCCCc-cCCcccCCCceeeCCChH
Confidence 56899999999 9999999999999999999999999999 987 8999999999
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhc-CCCCe
Q 047109 118 ASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLK-SSETK 196 (808)
Q Consensus 118 ~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~ 196 (808)
.++.++++++++|||+||++|++|++||. ...+.|++.+++.|+||++.+.++. ..+..++..++.+++ +++++
T Consensus 172 ---~~~~a~~~ll~~fgw~~V~ii~~d~~~g~-~~~~~~~~~~~~~gi~v~~~~~~~~-~~~~~~~~~~l~~i~~~s~a~ 246 (555)
T 2e4u_A 172 ---YQAKAMAEILRFFNWTYVSTVASEGDYGE-TGIEAFEQEARLRNICIATAEKVGR-SNIRKSYDSVIRELLQKPNAR 246 (555)
T ss_dssp ---HHHHHHHHHHHHTTCCEEEEEEESSTTHH-HHHHHHHHHHHTTTCEEEEEEEECT-TCCHHHHHHHHHHHHTCTTCC
T ss_pred ---HHHHHHHHHHHHcCCeEEEEEEeeChHHH-HHHHHHHHHHHHCCccEEEEEEeCC-CCChHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999 9999999999999999999888875 446788999999996 47999
Q ss_pred EEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHH---------
Q 047109 197 VFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNF--------- 267 (808)
Q Consensus 197 viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f--------- 267 (808)
|||+++...++..++++++++|+ +++||.++.|........ ..... ++|++++..+....|.+++|
T Consensus 247 vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~f~~~~~p~~~ 321 (555)
T 2e4u_A 247 VVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHV-AYGAITLELASHPVRQFDRYFQSLNPYNN 321 (555)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHH-HTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhh-cceEEEEEeccCCCCcHHHHHhhCCcccC
Confidence 99999999999999999999997 799999998875422211 12234 67899988877676766655
Q ss_pred ------HHHHHHHhhccCCC----------CCC-----CCcchhhhhHhhHHHHHHHHHHHHhhh-------------cC
Q 047109 268 ------TLKWKREMYLNNQN----------AEV-----SELDVHGILAYDTVWALAKASEKLKTE-------------IS 313 (808)
Q Consensus 268 ------~~~~~~~~~~~~~~----------~~~-----~~~~~~~~~~ydav~~~a~Al~~~~~~-------------~~ 313 (808)
.+.|++.|+|..+. +++ ..+..+++.+||||+++|+|+++++.+ ..
T Consensus 322 p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~ 401 (555)
T 2e4u_A 322 HRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKIL 401 (555)
T ss_dssp TTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSC
T ss_pred CCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCC
Confidence 45688888875321 111 013456889999999999999999752 02
Q ss_pred ChHHHHH-HHHcCccc------cceeE-EEe-eCCcccCCccEEEEEeec--C--cEEEEEEEeCCCCCccccccccccc
Q 047109 314 NETCYYK-QILNSRFT------GLSGD-FQL-INGKLTSSRAFEIVNVIG--K--TVKIVGFWTPTTRITKEMNSSVFIN 380 (808)
Q Consensus 314 ~~~~l~~-~l~~~~~~------g~tG~-v~f-~~g~~~~~~~~~i~~~~~--~--~~~~vg~~~~~~~~~~~~~~~~~~~ 380 (808)
++++|.+ +|++++|. |.+|. +.| ++|++.. .|+|++++. + .+++||.|++ .+.++
T Consensus 402 ~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~--~y~I~~~~~~~g~~~~~~VG~~~~------~l~i~---- 469 (555)
T 2e4u_A 402 DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMG--RYNVFNLQQTGGKYSYLKVGHWAE------TLSLD---- 469 (555)
T ss_dssp CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCC--CEEEEEEECTTSSCEEEEEEEESS------SEECC----
T ss_pred CcccccHHhHhceeecccccccCCCCCeEEEcCCCCccc--eEEEEEEEecCCcEEEEEEEEecc------eEEEe----
Confidence 6788988 99999999 99998 999 9999987 999999972 2 3899999984 23332
Q ss_pred ccCCCCCCCCCCCCceeEcCCCCccCCCccC-------CCCeEEEEeecCCccceEEEee
Q 047109 381 KMDNISSSSPNGELEAIIWPGGSVAIPVGSG-------KINKLRIGVPVNGHIEFVHVVR 433 (808)
Q Consensus 381 ~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~-------~~~~l~v~~~~~~~~p~~~~~~ 433 (808)
.+.|.|+. ..+|.+.| .++..+-|. .|||. |+.|.+
T Consensus 470 -------------~~~I~W~~--~~~P~S~CS~~C~pG~rk~~~~g~-~CC~~-C~~C~~ 512 (555)
T 2e4u_A 470 -------------VDSIHWSR--NSVPTSQCSDPCAPNEMKNMQPGD-VCCWI-CIPCEP 512 (555)
T ss_dssp -------------GGGCCCTT--SSCCCCCSSCCCCTTTEEEECCSS-SSCCE-EEECCT
T ss_pred -------------ccccccCC--CCCcceeeCCCCCCCeeeeecCCC-eeEEE-CccCCC
Confidence 46799987 68999999 334455566 56787 777754
No 4
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=3.6e-46 Score=412.79 Aligned_cols=360 Identities=17% Similarity=0.257 Sum_probs=309.2
Q ss_pred CeEEEEEEecCCc-----chhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEec
Q 047109 1 EVHVGVILDMRSW-----AGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLMQN-VDLQAIICT 73 (808)
Q Consensus 1 ~i~IG~i~~~~~~-----~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li~~-~~v~aiiG~ 73 (808)
+|+||+++|++|+ .|.....|+++|+++||++ |+++ ++|++++.|++|+|.+|++++++|+.+ ++|.+||||
T Consensus 14 ~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~aviG~ 92 (433)
T 4f11_A 14 PLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG 92 (433)
T ss_dssp EEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEEEC
T ss_pred ceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 5899999999995 3788999999999999999 7776 999999999999999999999999986 499999999
Q ss_pred CCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCcc
Q 047109 74 EMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWG 148 (808)
Q Consensus 74 ~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g 148 (808)
. +|..+.++++++..++||+|+++++++. +++ ++||+.|++. .++.++++++++++|++|++|++|++||
T Consensus 93 ~-~S~~~~a~~~~~~~~~ip~is~~~~~~~-l~~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 93 V-CPSVTSIIAESLQGWNLVQLSFAATTPV-LADKKKYPYFFRTVPSDN---AVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp C-SHHHHHHHHHTHHHHTCEEEESSCCCGG-GGCTTTCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred C-cchHHHHHHHHHHhcCceEEEcccCCcc-ccccccCCceEEecCchH---HHHHHHHHHHHHcCCcEEEEEEecchhh
Confidence 9 9999999999999999999999999998 886 8999999999 9999999999999999999999999999
Q ss_pred ccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 149 SDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
. ...+.|.+.+++.|++|+..+.++. |+..++.+|+++++|+|++++...++..++++++++|++.++++||.
T Consensus 168 ~-~~~~~~~~~~~~~g~~v~~~~~~~~------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 240 (433)
T 4f11_A 168 S-EVRNDLTGVLYGEDIEISDTESFSN------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWII 240 (433)
T ss_dssp H-HHHHHHHHHSSSSSCEEEEEEEESS------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred H-HHHHHHHHHHHHcCceEEEEeccCc------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 9 9999999999999999999887754 56788999999999999999999999999999999999877899999
Q ss_pred eCccccccc-----------cCCccccccccceeEEEeeccCCc--------HHHHHHHHHHHHH-hhccCCCCCCCCcc
Q 047109 229 TASTMNFLH-----------SMDSSVVESSMQGVLGFKRYVPAS--------KQLRNFTLKWKRE-MYLNNQNAEVSELD 288 (808)
Q Consensus 229 ~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~ 288 (808)
++....... ......... ++|++++.++.+.. +..++|.++|++. ++. .++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~--------~~~ 311 (433)
T 4f11_A 241 PGWYEPSWWEQVHTEANSSRCLRKNLLAA-MEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGV--------GPS 311 (433)
T ss_dssp ESCSCTTTTTCC------CCSCHHHHHHH-HTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTS--------CCC
T ss_pred cCcchHhHhcccccCCCCCCCCHHHHHHH-HhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCC--------Ccc
Confidence 998322111 011223344 78888888765422 3478899999876 332 256
Q ss_pred hhhhhHhhHHHHHHHHHHHHhhhc-----------------CChHHHHHHHHcCccccceeEEEeeCCcccCCccEEEEE
Q 047109 289 VHGILAYDTVWALAKASEKLKTEI-----------------SNETCYYKQILNSRFTGLSGDFQLINGKLTSSRAFEIVN 351 (808)
Q Consensus 289 ~~~~~~ydav~~~a~Al~~~~~~~-----------------~~~~~l~~~l~~~~~~g~tG~v~f~~g~~~~~~~~~i~~ 351 (808)
.+++++||||+++|+|+++++++. .++..|.++|++++|+|++|++.|++|++.. .|+|++
T Consensus 312 ~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~~--~~~I~~ 389 (433)
T 4f11_A 312 KFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERMG--TIKFTQ 389 (433)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEEC--EEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCceee--eEEEEE
Confidence 678999999999999999997531 0378999999999999999999998899997 999999
Q ss_pred eecCcEEEEEEEeCCCCCcccccccccccccCCCCCCCCCCCCceeEcCCCCc
Q 047109 352 VIGKTVKIVGFWTPTTRITKEMNSSVFINKMDNISSSSPNGELEAIIWPGGSV 404 (808)
Q Consensus 352 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~ 404 (808)
++++++++||.|++... .+.++ .+.|.||++.+
T Consensus 390 ~~~g~~~~VG~~~~~~~---~l~~~-----------------~~~i~W~~~~~ 422 (433)
T 4f11_A 390 FQDSREVKVGEYNAVAD---TLEII-----------------NDTIRFQGSEP 422 (433)
T ss_dssp EETTEEEEEEEEETTTT---EEEEC-----------------TTTCCCSSSSC
T ss_pred EECCceEEEEEEECCCC---eEEEe-----------------CCceECCCCCC
Confidence 99988999999986432 23322 35789998753
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.4e-45 Score=402.86 Aligned_cols=355 Identities=18% Similarity=0.281 Sum_probs=305.7
Q ss_pred CeEEEEEEecCCcc-hhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA-GKISNSCISMAISDFYALNTHYK-TRLVLHSRDSK-GDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~-g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~-~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|.. |...+.|+++|+++||++++++| ++|++++.|+. .|+..+.+.+|+++++ +|.+||||. +|
T Consensus 4 ~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~-~V~aiiG~~-~S 81 (395)
T 3h6g_A 4 VLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSL-GVAAIFGPS-HS 81 (395)
T ss_dssp EEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHH-CCSCEECCS-SH
T ss_pred ceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhc-CcEEEECCC-Ch
Confidence 58999999998854 88899999999999999999999 89999998876 6999999999999986 999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 154 (808)
.++.+++++++.++||+|+++++++. +++ ++||+.|++. .++.++++++++++|++|++++ |++||. ...+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~-l~~~~~~~~r~~~~~~---~~~~~~~~~~~~~g~~~v~ii~-d~~~g~-~~~~ 155 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQV-SDNKDSFYVSLYPDFS---SLSRAILDLVQFFKWKTVTVVY-DDSTGL-IRLQ 155 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCC-TTCCCCSEEEEEECHH---HHHHHHHHHHHHTTCSEEEEEE-SSTHHH-HHTH
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccc-ccccCceEEEecCCHH---HHHHHHHHHHHHCCCeEEEEEE-EChhHH-HHHH
Confidence 99999999999999999999999999 887 8999999999 9999999999999999999998 677999 8999
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMN 234 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 234 (808)
.+.+.+++.|++|+..+ ++. +..|+..++++++++++|+|++++...++..++++++++||..+.++|++++....
T Consensus 156 ~~~~~~~~~g~~v~~~~-~~~---~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~ 231 (395)
T 3h6g_A 156 ELIKAPSRYNLRLKIRQ-LPA---DTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLF 231 (395)
T ss_dssp HHHTGGGTSSCEEEEEE-CCS---SGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGG
T ss_pred HHHHhhhcCCceEEEEE-eCC---CchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCcee
Confidence 99999999999999865 665 57799999999999999999999999999999999999999999999999865332
Q ss_pred ccccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCC----CCcchhhhhHhhHHHHHHHHHHHHhh
Q 047109 235 FLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEV----SELDVHGILAYDTVWALAKASEKLKT 310 (808)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~~~~~~~ydav~~~a~Al~~~~~ 310 (808)
..+.... ... ..++.++....+.++.+++|.++|++.+....|.... ..++.+++++|||++++++|++++++
T Consensus 232 ~~~~~~~--~~~-g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~ 308 (395)
T 3h6g_A 232 ALDVEPY--RYS-GVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQ 308 (395)
T ss_dssp GBCCTTT--TTS-CCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EechHHh--ccC-ccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhc
Confidence 2221111 111 2346777777888899999999999876544332211 23567899999999999999999976
Q ss_pred h------------cCChHHHHHHHHcCccccceeEEEe-e-CCcccCCccEEEEEeecCcEEEEEEEeCCCCCcc
Q 047109 311 E------------ISNETCYYKQILNSRFTGLSGDFQL-I-NGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRITK 371 (808)
Q Consensus 311 ~------------~~~~~~l~~~l~~~~~~g~tG~v~f-~-~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~~ 371 (808)
. +.++.++.++|++++|+|++|++.| + +|++... .+.|+++++++++.||.|++..++..
T Consensus 309 ~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~-~~~i~~~~~~~~~~vG~w~~~~g~~~ 382 (395)
T 3h6g_A 309 MTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDF-DLDVISLKEEGLEKIGTWDPASGLNM 382 (395)
T ss_dssp CCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCC-CEEEEEEETTEEEEEEEEETTTEECC
T ss_pred CCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCC-eEEEEEeccCCceEEEEEcCCCCccc
Confidence 1 2378899999999999999999999 8 9999987 89999999999999999999877543
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.5e-45 Score=399.05 Aligned_cols=347 Identities=14% Similarity=0.253 Sum_probs=281.5
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSK-GDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~-~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
+|+||+++|++|. ..+.|+++|+++||++ +++|++++.|++ +||.++++++|+|+++ +|.+||||. +|.+
T Consensus 2 ~i~IG~i~~~sg~---~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~-~V~aiiG~~-~S~~ 72 (376)
T 3hsy_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFY-DKKS 72 (376)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC-CTTT
T ss_pred ceeEEEEeCCCCH---HHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhc-CcEEEECCC-chhH
Confidence 4899999999985 5689999999999997 579999999965 5999999999999987 899999999 9999
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHh
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDS 159 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~ 159 (808)
+.+++++++.++||+|+++++... -..++||+.|+ . +.+++++++++||++|++|| |++||. ...+.|.+.
T Consensus 73 ~~av~~~~~~~~ip~is~~~~~~~-~~~~~~~~~p~-~-----~~a~~~~~~~~gw~~vaii~-d~~~g~-~~~~~~~~~ 143 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFPTDG-THPFVIQMRPD-L-----KGALLSLIEYYQWDKFAYLY-DSDRGL-STLQAVLDS 143 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCCCCS-CCTTEEECSCC-C-----HHHHHHHHHHTTCCEEEEEE-CSTTCS-HHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCCCcc-cCCceEEeCcc-H-----HHHHHHHHHhcCCCEEEEEE-eCchhH-HHHHHHHHH
Confidence 999999999999999999873311 11189999877 5 78999999999999999999 889999 999999999
Q ss_pred hhcCCcEEEEEEecCCCC--CChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccc
Q 047109 160 LHDNDIDIARRITISMSS--NTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLH 237 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 237 (808)
+++.|++|+..+.++. . .+..|+..++.+|+++++|+|++++..+++..++++++++||..++++||+++......+
T Consensus 144 ~~~~g~~v~~~~~~~~-~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~ 222 (376)
T 3hsy_A 144 AAEKKWQVTAINVGNI-NNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 222 (376)
T ss_dssp HHHHTCEEEEEECTTC-C--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTT
T ss_pred hhhcCCeEEEEEeccc-cccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccc
Confidence 9999999998776654 2 135799999999999999999999999999999999999999888899999875332212
Q ss_pred cCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh------
Q 047109 238 SMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE------ 311 (808)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~------ 311 (808)
. .+.... ..+++++....+++|.+++|.++|++++++.+++.....++.+++++||||+++++|+++++++
T Consensus 223 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 223 L--LKIQFG-GANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp G--GGSCCT-TCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred h--HHhhcC-CcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1 111122 3457888888888999999999999998887654433357888999999999999999998741
Q ss_pred --------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCCc
Q 047109 312 --------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRIT 370 (808)
Q Consensus 312 --------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~ 370 (808)
+.+|.+|.++|++++|+|++|++.| ++|++... .++|++++++|++.||.|++..++.
T Consensus 300 ~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 300 RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSC-EEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccc-eEEEEEecCCCceEEEEEcCCCCce
Confidence 1256789999999999999999999 99999887 9999999999999999999988754
No 7
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=7.7e-45 Score=396.75 Aligned_cols=349 Identities=15% Similarity=0.247 Sum_probs=299.8
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcc--eEEEEEEecC-CCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYK--TRLVLHSRDS-KGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~--~~l~~~~~d~-~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||++||.++. +...|+++|+++||+++++++ ++|.+...++ ++++..+.+++|+++++ +|.|||||. +|
T Consensus 5 ~I~IG~lf~~~~~---~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~V~aiiG~~-~S 79 (389)
T 4gpa_A 5 SVQIGGLFIRNTD---QEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSR-GVFAIFGLY-DK 79 (389)
T ss_dssp EEEEEEEECTTCH---HHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHT-TCSEEEECC-CT
T ss_pred eEEEEEEEcCCCh---HHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhc-CCEEEEeCC-cc
Confidence 4899999998874 678899999999999999995 6666666664 47888999999999987 999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLF 157 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 157 (808)
.++.+++++++.++||+++++++.+. .+++.+++.|.. ++++++++++|+|++|++||+++.++. ..+.+.
T Consensus 80 ~~~~~v~~i~~~~~ip~is~~~~~~~-~~~~~~~~~~~~------~~a~~~l~~~~~w~~vaii~~~d~~~~--~~~~~~ 150 (389)
T 4gpa_A 80 RSVHTLTSFCSALHISLITPSFPTEG-ESQFVLQLRPSL------RGALLSLLDHYEWNCFVFLYDTDRGYS--ILQAIM 150 (389)
T ss_dssp TTHHHHHHHHHHTTCEEEECSCCCSS-CCSSEEECSCCC------HHHHHHHHHHTTCCEEEEEECSTTCSH--HHHHHH
T ss_pred HHHHHHHHHHHHhCCCceeccccccc-cccCCccccCCH------HHHHHHHHHHcCCcEEEEEEecchhhH--HHHHHH
Confidence 99999999999999999999887776 666666666654 468999999999999999998777665 677888
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccc
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLH 237 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 237 (808)
+.+.+.|++|+..+..+. ...++..++.+++++++++|++.+..+++..++++|+++|++.++++|++++.+.....
T Consensus 151 ~~~~~~g~~v~~~~~~~~---~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 227 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENF---NDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDIS 227 (389)
T ss_dssp HHHHTTTCEEEEEECTTC---CHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSC
T ss_pred HHHHhcCceEEEEeecCC---cchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchh
Confidence 999999999998776654 77899999999999999999999999999999999999999999999999988765433
Q ss_pred cCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh------
Q 047109 238 SMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE------ 311 (808)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~------ 311 (808)
. .+.... ..++.++....+..+.+++|.++|++.+.+..+... ..+..+++++||||+++|+|++++.++
T Consensus 228 ~--~~~~~~-~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 228 L--ERFIHG-GANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSE-TPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp C--HHHHHH-BCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTT-SCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred h--hhhhhc-ccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCC-CChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2 223333 678888999999999999999999988777644322 346788999999999999999999754
Q ss_pred --------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCCcc
Q 047109 312 --------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRITK 371 (808)
Q Consensus 312 --------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~~ 371 (808)
+.+|..|.++|++++|+|+||+|.| ++|+|... .|+|++++++|+++||.|++..++..
T Consensus 304 ~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~-~~~I~~l~~~~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 304 RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNY-TMDVFELKSTGPRKVGYWNDMDKLVL 377 (389)
T ss_dssp TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSC-EEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCC-EEEEEEEECCEEEEEEEEECCCCeEE
Confidence 1256789999999999999999999 99999987 89999999999999999999887543
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=2.5e-45 Score=400.34 Aligned_cols=355 Identities=15% Similarity=0.267 Sum_probs=295.1
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHH-HHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPL-HALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~-~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
+||||+++|+++..|...+.|+++|+++||++++++| ++|++++.|+++++. .+.+++|+++++ +|.+||||. +|+
T Consensus 4 ~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~-~V~aiiG~~-~S~ 81 (393)
T 3om0_A 4 SLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPK-GVVSVLGPS-SSP 81 (393)
T ss_dssp EEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGG-CCSCEECCS-SCH
T ss_pred ceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhc-CcEEEECCC-Cch
Confidence 4899999999988899999999999999999999998 999999999999764 577889999865 999999999 995
Q ss_pred -HHHHHHHhcCCCCccEEeccCCC-Cccccc-ce--eeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcH
Q 047109 79 -GAHILAEIGSKAKIPVISLYATL-PSSLTS-YS--IQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNII 153 (808)
Q Consensus 79 -~~~~~~~~~~~~~iP~is~~~~~-~~~ls~-~~--~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~ 153 (808)
++.+++++++.++||+|++++++ +. ... ++ ||+.|++. .++.++++++++++|++|++||+|++||. .+.
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~~~~-~~~~~~~~fr~~p~~~---~~~~~~~~~~~~~g~~~vaii~~~~~~g~-~l~ 156 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEETPR-LQYLRFASVSLYPSNE---DVSLAVSRILKSFNYPSASLICAKAECLL-RLE 156 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCCCC-----CCSCCEESSCCHH---HHHHHHHHHHHHTTSCCEEEEESSTTHHH-HTH
T ss_pred hHHHHHHHHHhccCCCeEeccCCcCcc-ccccccceEEecCCHH---HHHHHHHHHHHhCCCcEEEEEEeCchHHH-HHH
Confidence 55799999999999999998874 33 222 66 99999999 99999999999999999999999999998 665
Q ss_pred HHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccc
Q 047109 154 PYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTM 233 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 233 (808)
+.+ +.+.+.|++|+... ++ +..|+..++.+|+++++|+|++++..+++..++++++++|+..++++||+++...
T Consensus 157 ~~~-~~~~~~g~~v~~~~-~~----~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 230 (393)
T 3om0_A 157 ELV-RGFLISKETLSVRM-LD----DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDF 230 (393)
T ss_dssp HHH-HHHHHSSSCEEEEE-CC-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTG
T ss_pred HHH-HhhhccCCeEEEEe-cC----CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccc
Confidence 555 55778899997654 32 3458899999999999999999999999999999999999988889999988654
Q ss_pred cccccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh--
Q 047109 234 NFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE-- 311 (808)
Q Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~-- 311 (808)
...+.. ..... ..+++++....++.|.+++|.++|++.++..+.......++.+++++|||++++++|++++++.
T Consensus 231 ~~~~l~--~~~~~-~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~ 307 (393)
T 3om0_A 231 PILHLD--GIVED-SSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE 307 (393)
T ss_dssp GGCCCT--TTCCS-SCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cccchh--hhhcc-CCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc
Confidence 432221 12223 5678888888888899999999999888743221111236778999999999999999999751
Q ss_pred -------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCCccc
Q 047109 312 -------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRITKE 372 (808)
Q Consensus 312 -------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~~~~ 372 (808)
+.++.++.++|++++|+|++|++.| ++|++... .|+|+++++++++.||.|++..++...
T Consensus 308 ~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 308 IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNY-TLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSC-EEEEEEEETTEEEEEEEEECC------
T ss_pred CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccce-eEEEEEeccCCceEeeeEcCCCCcccc
Confidence 1388999999999999999999999 99999876 999999999999999999998876443
No 9
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=402.13 Aligned_cols=350 Identities=18% Similarity=0.261 Sum_probs=299.4
Q ss_pred CeEEEEEEecC---------Cc----chhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhhhc--
Q 047109 1 EVHVGVILDMR---------SW----AGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLMQN-- 64 (808)
Q Consensus 1 ~i~IG~i~~~~---------~~----~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li~~-- 64 (808)
.|.||++||.+ +. .|.+...|+++|+||||+++++|| ++|+++++|+|+++..|++++.+++++
T Consensus 13 Di~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~~~ 92 (479)
T 3sm9_A 13 DLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASL 92 (479)
T ss_dssp SEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhCCC
Confidence 37899999985 21 478889999999999999999998 999999999999999999999999986
Q ss_pred ----------------------CCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCc
Q 047109 65 ----------------------VDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDE 117 (808)
Q Consensus 65 ----------------------~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~ 117 (808)
++|.|||||. +|+++.+++.+++.+++|+|++++++|. |++ ++||+.|++.
T Consensus 93 ~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~-~S~~s~ava~i~~~~~iP~Is~~a~~~~-lsd~~~~p~~fr~~psd~ 170 (479)
T 3sm9_A 93 TKVDEAEYMCPDGSYAIQENIPLLIAGVIGGS-YSSVSIQVANLLRLFQIPQISYASTSAK-LSDKSRYDYFARTVPPDF 170 (479)
T ss_dssp -----------------------CEEEEECCS-SHHHHHHHHHHHGGGTCCEEESSCCCGG-GGCTTTTTTEEESSCCTH
T ss_pred ccCCCCCCccCCCCccccccCCCceEEEECCC-CcHHHHHHHHHHhcCCccEECCCcCCcc-ccCcccCCCeEEeCCcHH
Confidence 4799999999 9999999999999999999999999999 997 8999999999
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHH-HHhcCCCCe
Q 047109 118 ASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKL-SMLKSSETK 196 (808)
Q Consensus 118 ~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~ 196 (808)
.++.++++++++|||+||++|++|++||. ...+.|++++++.|+||++.+.++. ..+..++..++ +.+++++++
T Consensus 171 ---~~~~a~~~ll~~fgw~~V~ii~~dd~~G~-~~~~~~~~~~~~~Gi~v~~~~~i~~-~~~~~d~~~~l~~~i~~s~a~ 245 (479)
T 3sm9_A 171 ---YQAKAMAEILRFFNWTYVSTVASEGDYGE-TGIEAFEQEARLRNISIATAEKVGR-SNIRKSYDSVIRELLQKPNAR 245 (479)
T ss_dssp ---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHHHHHHHHHTTTCEEEEEEEECC---CHHHHHHHHHHHHTCTTCC
T ss_pred ---HHHHHHHHHHHHCCCeEEEEEEecchhhH-HHHHHHHHHHHHCCceEEEEEEcCC-CCChHHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999 9999999999999999999998886 44577899998 678889999
Q ss_pred EEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHHH--------
Q 047109 197 VFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFT-------- 268 (808)
Q Consensus 197 viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~-------- 268 (808)
+||+++...++..++++++++|++ ++||.++.|........ ..... +.|++++.++..+.|++++|.
T Consensus 246 vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 246 VVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHV-AYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTT-TTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-ccccc-CceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 999999999999999999999983 89999999975321111 12234 789999999999999999884
Q ss_pred -------HHHHHHhhccCCCC----------CCC-----CcchhhhhHhhHHHHHHHHHHHHhh--h-----------cC
Q 047109 269 -------LKWKREMYLNNQNA----------EVS-----ELDVHGILAYDTVWALAKASEKLKT--E-----------IS 313 (808)
Q Consensus 269 -------~~~~~~~~~~~~~~----------~~~-----~~~~~~~~~ydav~~~a~Al~~~~~--~-----------~~ 313 (808)
+.|+..|+|..+.. ++. ........+||||+++|+|||++.. + ..
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~ 400 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKIL 400 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSC
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCc
Confidence 46888898864321 110 0112346899999999999999964 1 12
Q ss_pred ChHHHH-HHHHcCccccc------eeE-EEe-eCCcccCCccEEEEEeec-C---cEEEEEEEe
Q 047109 314 NETCYY-KQILNSRFTGL------SGD-FQL-INGKLTSSRAFEIVNVIG-K---TVKIVGFWT 364 (808)
Q Consensus 314 ~~~~l~-~~l~~~~~~g~------tG~-v~f-~~g~~~~~~~~~i~~~~~-~---~~~~vg~~~ 364 (808)
++++|. .+|++++|.+. +|. +.| ++|++.. .|+|++++. + .+++||.|+
T Consensus 401 ~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~--~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 401 DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMG--RYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCC--CEEEEEEEESSSCEEEEEEEEES
T ss_pred ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCccc--ceEEEEEEECCCcEEEEEEEEEe
Confidence 677899 99999999998 554 999 9999998 999999983 2 278999998
No 10
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1e-44 Score=393.94 Aligned_cols=341 Identities=16% Similarity=0.281 Sum_probs=295.9
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKG-DPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~-~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
+||||+++|++|+ ..+.|+++|+++||+++ +|++++.|+++ ||..+++++|+|+++ +|.+||||. +|.+
T Consensus 10 ~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~-~S~~ 79 (384)
T 3saj_A 10 NIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFY-ERRT 79 (384)
T ss_dssp EEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECC-CHHH
T ss_pred ceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCC-CHHH
Confidence 5899999999998 78999999999999986 99999999886 999999999999987 999999999 9999
Q ss_pred HHHHHHhcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 157 (808)
+.++++++..++||+|+++ .|. ++. ++||+.|+ . +.+++++++++||++|++|| |++||. ...+.+.
T Consensus 80 ~~a~~~~~~~~~iP~is~~--~~~-~~~~~~~~~~~p~-~-----~~a~~~~~~~~g~~~v~ii~-d~~~g~-~~~~~~~ 148 (384)
T 3saj_A 80 VNMLTSFCGALHVCFITPS--FPV-DTSNQFVLQLRPE-L-----QEALISIIDHYKWQTFVYIY-DADRGL-SVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHTCCEEECS--CCC-SSCCTTEEECSCC-C-----HHHHHHHHHHTTCCEEEEEE-CSTTCS-HHHHHHH
T ss_pred HHHHHHHhccCCCCeEecc--ccC-cCccCceEEeccc-H-----HHHHHHHHHHCCCcEEEEEE-eCchhH-HHHHHHH
Confidence 9999999999999999985 455 554 88899887 5 78999999999999999999 668999 9999999
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccc
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLH 237 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 237 (808)
+.+++.|++|+..+..+. +..|+.+++.+|+++++|+|++++...++..++++++++||..++++||+++.+....+
T Consensus 149 ~~~~~~g~~v~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~ 225 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTT---TEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDID 225 (384)
T ss_dssp HHHHHHTCEEEEEEGGGC---CHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSC
T ss_pred HHhhhcCceEEEEEeccC---CchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCccccc
Confidence 999999999998875444 67899999999999999999999999999999999999999888899999986443221
Q ss_pred cCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh------
Q 047109 238 SMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE------ 311 (808)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~------ 311 (808)
. ...... ..+++++.++.+.+|.+++|.++|++.+++.+|+.....++.+++++|||++++++|++++++.
T Consensus 226 ~--~~~~~~-~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~ 302 (384)
T 3saj_A 226 L--NKFKES-GANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISR 302 (384)
T ss_dssp H--HHHHHT-TCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred H--HHhhCC-CcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccceec
Confidence 1 112222 5678888888888999999999999999887654333345778999999999999999999761
Q ss_pred --------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCC
Q 047109 312 --------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRI 369 (808)
Q Consensus 312 --------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~ 369 (808)
+.+|.+|.++|++++|+|++|++.| ++|++... .|+|++++++++++||.|++..++
T Consensus 303 ~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~W~~~~gl 374 (384)
T 3saj_A 303 RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNY-TLHVIEMKHDGIRKIGYWNEDDKF 374 (384)
T ss_dssp CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSC-CEEEEEEETTEEEEEEEEETTTEE
T ss_pred CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccc-eEEEEEeccCCcceeEEEcCCCCc
Confidence 1378999999999999999999999 99999987 999999999999999999987764
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.1e-44 Score=401.31 Aligned_cols=377 Identities=14% Similarity=0.160 Sum_probs=306.6
Q ss_pred CeEEEEEEecCCcc---hhhHHH-HHHHHHHHHHhcCCCcc-eEEEEEEecC-----CCCHHHHHHHHHHhhhcCCeEEE
Q 047109 1 EVHVGVILDMRSWA---GKISNS-CISMAISDFYALNTHYK-TRLVLHSRDS-----KGDPLHALTTVLNLMQNVDLQAI 70 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~-a~~~Av~~iN~~~~~l~-~~l~~~~~d~-----~~~~~~a~~~a~~li~~~~v~ai 70 (808)
+|+||+++|++|+. |.+... |+++|+++||++++++| ++|++++.|+ +|++..++..+.+++.+++|.+|
T Consensus 2 ~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~av 81 (435)
T 1dp4_A 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (435)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred ceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEE
Confidence 48999999999854 767777 99999999999999996 9999999999 56677899999999877799999
Q ss_pred EecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEE----
Q 047109 71 ICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILI---- 141 (808)
Q Consensus 71 iG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii---- 141 (808)
|||. +|..+.+++.+++.++||+|+++++++. |++ ++||+.|++. .++.++++++++++|++|++|
T Consensus 82 iG~~-~S~~~~av~~~~~~~~ip~is~~~~~~~-ls~~~~~~~~fr~~p~~~---~~~~a~~~~l~~~~w~~v~ii~~~d 156 (435)
T 1dp4_A 82 LGPG-CVYSAAPVGRFTAHWRVPLLTAGAPALG-IGVKDEYALTTRTGPSHV---KLGDFVTALHRRLGWEHQALVLYAD 156 (435)
T ss_dssp ECCC-SHHHHHHHHHHHHHHTCCEEESCCCCGG-GGCTTTSTTEEECSCCHH---HHHHHHHHHHHHHTCCSEEEEEEEC
T ss_pred ECCC-ChHHHHHHHHHHHhcCCcEEcccccccc-cCcccccCeEEEecCcHH---HHHHHHHHHHHHCCCcEEEEEEEcc
Confidence 9999 9999999999999999999999999998 986 8999999999 999999999999999999999
Q ss_pred --EecCCccccCcHHHHHHhhhc-CCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 047109 142 --YEDNTWGSDNIIPYLFDSLHD-NDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLG 218 (808)
Q Consensus 142 --~~d~~~g~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~g 218 (808)
+++++||. ..+.+.+.+.+ .|+||+..+.++. +..++..++++|++ ++|+|++++...++..++++++++|
T Consensus 157 ~~~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~---~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g 230 (435)
T 1dp4_A 157 RLGDDRPCFF--IVEGLYMRVRERLNITVNHQEFVEG---DPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAG 230 (435)
T ss_dssp CSSSCCHHHH--HHHHHHHHHHHHHCCEEEEEEECTT---CGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCCcchHHH--HHHHHHHHHHhhcCeEEEEEEEecC---chhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcC
Confidence 56666665 44667778887 9999998776544 56789999999998 9999999999999999999999999
Q ss_pred CCCCCeEEEEeCccccccc---------------cCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccC--CC
Q 047109 219 MMSKGYSWIVTASTMNFLH---------------SMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNN--QN 281 (808)
Q Consensus 219 l~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~ 281 (808)
+..++++||.++.+..... ........+ .++++++.+..+.++.+++|.++|++.++... ..
T Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 309 (435)
T 1dp4_A 231 LTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQA-FQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTV 309 (435)
T ss_dssp CCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHH-GGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHH-hheeEEEecCCCCChhHHHHHHHHHHHhcCCCCccc
Confidence 9776799999987664311 000112233 67888877777778899999999887764310 00
Q ss_pred CCCCCcchhhhhHhhHHHHHHHHHHHHhhh---cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEee--cC
Q 047109 282 AEVSELDVHGILAYDTVWALAKASEKLKTE---ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVI--GK 355 (808)
Q Consensus 282 ~~~~~~~~~~~~~ydav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~--~~ 355 (808)
.. ..++.+++++||||+++|+|++++..+ ..++++|.++|++++|+|++|++.| ++|++.. .|+|++++ ++
T Consensus 310 ~~-~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~~--~~~i~~~~~~~g 386 (435)
T 1dp4_A 310 ED-GLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRDT--DFSLWDMDPETG 386 (435)
T ss_dssp CC-SGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBCC--CEEEEEECTTTC
T ss_pred cc-chhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCccc--eeEEEEecCCCC
Confidence 00 125667899999999999999999422 1278899999999999999999999 9999997 99999994 44
Q ss_pred cEEEEEEEeCCCCCcccccccccccccCCCCCCCCCCCCceeEcCCCCccCCCccC
Q 047109 356 TVKIVGFWTPTTRITKEMNSSVFINKMDNISSSSPNGELEAIIWPGGSVAIPVGSG 411 (808)
Q Consensus 356 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 411 (808)
.+++||.|++..+ .+.+. ....|.||++..+...+.|
T Consensus 387 ~~~~vg~~~~~~~---~l~~~----------------~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 387 AFRVVLNYNGTSQ---ELMAV----------------SEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp CEEEEEEECTTTC---CEEES----------------TTCCCCCTTSSCCCSSCTT
T ss_pred cEEEEEEecCCCc---eEEEc----------------CCceeeCCCCCCCCCCCCC
Confidence 5999999998764 22210 1367999987433334444
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3.5e-44 Score=397.64 Aligned_cols=352 Identities=14% Similarity=0.171 Sum_probs=290.7
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCC----Ccc-eEEEEEEecCCCCHHHHHHHHHHhhh---cCCeEE
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNT----HYK-TRLVLHSRDSKGDPLHALTTVLNLMQ---NVDLQA 69 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~----~l~-~~l~~~~~d~~~~~~~a~~~a~~li~---~~~v~a 69 (808)
+|+||+++|++|+. |.....|+++|+++||++++ ++| ++|++++.|++|++. |+..+.+++. +++|.+
T Consensus 9 ~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~a 87 (441)
T 1jdp_A 9 KIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKPDL 87 (441)
T ss_dssp EEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCCSE
T ss_pred ceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCceE
Confidence 48999999999974 66788999999999999998 887 999999999999998 7776666552 338999
Q ss_pred EEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc------ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEe
Q 047109 70 IICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS------YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYE 143 (808)
Q Consensus 70 iiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~------~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~ 143 (808)
||||. +|.++.+++.+++.+++|+|++++++|. +++ ++||+.|++. .++.++++++++|+|++|++|++
T Consensus 88 iiG~~-~S~~~~~v~~~~~~~~ip~is~~~~~~~-ls~~~~~~~~~fr~~p~~~---~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 88 ILGPV-CEYAAAPVARLASHWDLPMLSAGALAAG-FQHKDSEYSHLTRVAPAYA---KMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp EECCC-SHHHHHHHHHHHHHHTCCEEESCCCSGG-GGCTTTTTTTEEECSCCHH---HHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EECCC-chhhHHHHHHHHhhcCCcEEcCCCCchh-hccccccCCceEEecCcHH---HHHHHHHHHHHhcCCcEEEEEEE
Confidence 99999 9999999999999999999999999998 874 7999999999 99999999999999999999999
Q ss_pred cCCccccC---cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 144 DNTWGSDN---IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 144 d~~~g~~~---~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
|++||. . ..+.+++.+++.|+||+..+.++. +..++..++++|+ +++|+|++++..+++..++++++++|+.
T Consensus 163 d~~~g~-~~~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~ 237 (441)
T 1jdp_A 163 DDKLER-NCYFTLEGVHEVFQEEGLHTSIYSFDET---KDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMT 237 (441)
T ss_dssp CCSSSC-HHHHHHHHHHHHHHHHTCEEEEEEECTT---SCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred cCCccc-chHHHHHHHHHHHHhcCcEEEEEEecCC---cccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCC
Confidence 999999 8 899999999999999998776654 3347899999999 9999999999999999999999999998
Q ss_pred CCCeEEEEeC----------ccccccccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchh
Q 047109 221 SKGYSWIVTA----------STMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVH 290 (808)
Q Consensus 221 ~~~~~~i~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 290 (808)
.+.++||.++ .|... +......... ..++.++.......|.+++|.++|++.+... +......++.+
T Consensus 238 ~~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~-~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~-~~~~~~~~~~~ 314 (441)
T 1jdp_A 238 SGDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQA-YSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQ-GLNMEDYVNMF 314 (441)
T ss_dssp TTTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHH-GGGEEEEEECCCCCHHHHHHHHHHHHHHHTT-TCCCCSSCCHH
T ss_pred CCCEEEEEEeccccccccCCCCccC-CcccHHHHHH-HHhheEEeecCCCCchHHHHHHHHHHHHhhC-CCCccchhhhH
Confidence 7789999988 33211 1100000022 3455566666778899999999998774322 00011124567
Q ss_pred hhhHhhHHHHHHHHHHHHhhh---cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeec--C-cEEEEEEE
Q 047109 291 GILAYDTVWALAKASEKLKTE---ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIG--K-TVKIVGFW 363 (808)
Q Consensus 291 ~~~~ydav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~--~-~~~~vg~~ 363 (808)
++++||||+++|+|++++..+ ..++.+|.++|++++|+|++|++.| ++|++.. .|+|++++. + .+++||.|
T Consensus 315 ~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~~--~~~I~~~~~~~~g~~~~VG~~ 392 (441)
T 1jdp_A 315 VEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYG--DFSVIAMTDVEAGTQEVIGDY 392 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCC--EEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCccc--cEEEEecccCCCCceEEEEEE
Confidence 889999999999999999532 1378899999999999999999999 9999987 999999973 3 49999999
Q ss_pred eCCCC
Q 047109 364 TPTTR 368 (808)
Q Consensus 364 ~~~~~ 368 (808)
++..+
T Consensus 393 ~~~~~ 397 (441)
T 1jdp_A 393 FGKEG 397 (441)
T ss_dssp ETTTT
T ss_pred cCCCC
Confidence 98764
No 13
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.1e-44 Score=401.81 Aligned_cols=352 Identities=16% Similarity=0.276 Sum_probs=274.1
Q ss_pred CeEEEEEEecCCc-------------chhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhhhc--
Q 047109 1 EVHVGVILDMRSW-------------AGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLMQN-- 64 (808)
Q Consensus 1 ~i~IG~i~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li~~-- 64 (808)
.|+||+++|++|. .|.+...|+++|+||||+++++|| ++|+++++|+|+++..|++++.+++++
T Consensus 16 di~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~~~ 95 (481)
T 3mq4_A 16 DVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALI 95 (481)
T ss_dssp SEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGGGS
T ss_pred CEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhCCc
Confidence 4899999999873 377889999999999999999998 999999999999999999999999874
Q ss_pred --------------------CCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchh
Q 047109 65 --------------------VDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEAS 119 (808)
Q Consensus 65 --------------------~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~ 119 (808)
++|.|||||. +|+.+.+++.+++.+++|+|++++++|. |++ ++||+.|++.
T Consensus 96 ~~~~pny~C~~~~~~~~~~~~~v~aiiG~~-~S~~s~ava~~~~~~~iP~Is~~a~~~~-lsd~~~~p~~fr~~psd~-- 171 (481)
T 3mq4_A 96 QKDTSDVRCTNGEPPVFVKPEKVVGVIGAS-GSSVSIMVANILRLFQIPQISYASTAPE-LSDDRRYDFFSRVVPPDS-- 171 (481)
T ss_dssp CCCC--------------CCCCEEEEECCS-SHHHHHHHHHHHTTTTCCEEESSCCCGG-GGCTTTTTTEEESSCCTH--
T ss_pred ccCCCCcccCCCCCcccccCCCcEEEEcCC-CcHHHHHHHHHHHhCCCCEEccccCCcc-ccCcccCCceEEecCchH--
Confidence 6899999999 9999999999999999999999999999 997 8999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhc-CCcEEEEEEecCCCCCChH--HHHHHHHHhc-CCCC
Q 047109 120 QSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHD-NDIDIARRITISMSSNTDD--QVIEKLSMLK-SSET 195 (808)
Q Consensus 120 ~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~--~~~~~l~~l~-~~~~ 195 (808)
.++.++++++++|||+||++|++|++||. ...+.|++.+++ .|+||++.+.++. ..... ++..++.+++ ++++
T Consensus 172 -~~~~a~~~ll~~fgw~~V~li~~d~~~G~-~~~~~~~~~~~~~~Gi~va~~~~i~~-~~~~~~~d~~~~l~~i~~~s~a 248 (481)
T 3mq4_A 172 -FQAQAMVDIVKALGWNYVSTLASEGSYGE-KGVESFTQISKEAGGLSIAQSVRIPQ-ERKDRTIDFDRIIKQLLDTPNS 248 (481)
T ss_dssp -HHHHHHHHHHHHHTCCEEEEC---CHHHH-HHHHHHHHCC---CCCEECCCCCCCC-C------CCSHHHHCCCCC---
T ss_pred -HHHHHHHHHHHHCCCeEEEEEEEcchhHH-HHHHHHHHHHHHhCCEEEEEEEEcCC-CCccchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999 999999999885 7999998888875 32233 7888999998 5899
Q ss_pred eEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHHHH------
Q 047109 196 KVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTL------ 269 (808)
Q Consensus 196 ~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~------ 269 (808)
++||+++...++..++++++++|++. +++||.++.|........ ..... +.|.+++.++..+.|++++|.+
T Consensus 249 ~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 325 (481)
T 3mq4_A 249 RAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPLH-QHEDI-AEGAITIQPKRATVEGFDAYFTSRTLEN 325 (481)
T ss_dssp -CEEECCCSSHHHHHC-----------CCCEEEC-------------------CCCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccccc-ccchh-hccEEEEecCcCccccHHHHhhcCCcCc
Confidence 99999999999999999999999843 389999999975322211 22344 7899999999999999999843
Q ss_pred ---------HHHHHhhccCCCC--------------CC-C-----CcchhhhhHhhHHHHHHHHHHHHhhh---------
Q 047109 270 ---------KWKREMYLNNQNA--------------EV-S-----ELDVHGILAYDTVWALAKASEKLKTE--------- 311 (808)
Q Consensus 270 ---------~~~~~~~~~~~~~--------------~~-~-----~~~~~~~~~ydav~~~a~Al~~~~~~--------- 311 (808)
.|+..|+|..+.. +. . ........+||||+++|+|||++..+
T Consensus 326 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c 405 (481)
T 3mq4_A 326 NRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVC 405 (481)
T ss_dssp CTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----CC
T ss_pred CCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 5888888864321 11 0 01134567999999999999998742
Q ss_pred ----cCChHHHHHHHHcCcccccee-EEEe-eCCcccCCccEEEEEee--cC---cEEEEEEEe
Q 047109 312 ----ISNETCYYKQILNSRFTGLSG-DFQL-INGKLTSSRAFEIVNVI--GK---TVKIVGFWT 364 (808)
Q Consensus 312 ----~~~~~~l~~~l~~~~~~g~tG-~v~f-~~g~~~~~~~~~i~~~~--~~---~~~~vg~~~ 364 (808)
..++++|..+|++++|.+.+| .+.| ++|++.. .|+|++|+ ++ .+++||.|+
T Consensus 406 ~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~--~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 406 PEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPG--RYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp HHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCC--EEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCce--eEEEEEEEECCCCcEEEEEEEEEc
Confidence 115678999999999999999 5999 9999998 99999998 22 378999998
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.5e-43 Score=392.48 Aligned_cols=351 Identities=16% Similarity=0.245 Sum_probs=299.1
Q ss_pred eEEEEEEecCCc-----------------chhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhh-
Q 047109 2 VHVGVILDMRSW-----------------AGKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLM- 62 (808)
Q Consensus 2 i~IG~i~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li- 62 (808)
|.||++||.... .|.+...|+++|+||||+++++|| ++|+++++|+|+++..|++++.+++
T Consensus 18 i~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~~ll~ 97 (496)
T 3ks9_A 18 VIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIR 97 (496)
T ss_dssp EEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHS
T ss_pred EEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHHHHHH
Confidence 789999996421 267788999999999999999999 9999999999999999999999998
Q ss_pred ---------------------------hcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-----cee
Q 047109 63 ---------------------------QNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSI 110 (808)
Q Consensus 63 ---------------------------~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~ 110 (808)
.+++|.|||||. +|+++.+++++++.+++|+|++++++|. |++ ++|
T Consensus 98 ~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~-~S~~s~ava~i~~~~~iP~Is~~a~~~~-lsd~~~~p~~f 175 (496)
T 3ks9_A 98 DSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPG-SSSVAIQVQNLLQLFDIPQIAYSATSID-LSDKTLYKYFL 175 (496)
T ss_dssp TTC--------------------------CCEEEEECCS-SHHHHHHHHHHHGGGTCCEEESSCCCGG-GGCTTTCTTEE
T ss_pred hhhccccccCCCCccccCcccccccccCCCceEEEECCC-ccHHHHHHHHHHhhcceeEECCCcCCcc-ccCccCCCceE
Confidence 356899999999 9999999999999999999999999999 997 899
Q ss_pred eeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHh
Q 047109 111 QIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSML 190 (808)
Q Consensus 111 r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l 190 (808)
|+.|++. .++.++++++++|||+||++|++|++||. ...+.+++++++.|+||++.+.++. ..+..++..++++|
T Consensus 176 rt~psd~---~~~~ai~~ll~~fgw~~V~li~~dd~~G~-~~~~~~~~~~~~~Gi~v~~~~~i~~-~~~~~d~~~~l~~i 250 (496)
T 3ks9_A 176 RVVPSDT---LQARAMLDIVKRYNWTYVSAVHTEGNYGE-SGMDAFKELAAQEGLSIAHSDKIYS-NAGEKSFDRLLRKL 250 (496)
T ss_dssp ESSCCTH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHHHHHHHHHHTTCEEEEEEEECT-TCCHHHHHHHHHHH
T ss_pred EecCChH---HHHHHHHHHHHHcCCcEEEEEEeccHHHH-HHHHHHHHHHHHcCceEEEEEEECC-CCCHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999 9999999999999999999988876 55778999999999
Q ss_pred cC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHHH
Q 047109 191 KS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFT 268 (808)
Q Consensus 191 ~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~ 268 (808)
++ +++++|++++...++..++++++++|++ ..++||.++.|........ ..... +.|++++.++..+.|++++|.
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~-~k~~~i~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~fl 327 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVIE-GYEVE-ANGGITIKLQSPEVRSFDDYF 327 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHHT-TCHHH-HTTCEEEEECCCCCHHHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCC-CcEEEEEechhcccccccc-ccccc-cCceEEEeccCCcCcchHhHh
Confidence 97 4899999999999999999999999984 2368999999875322111 12234 789999999999999999985
Q ss_pred ---------------HHHHHHhhccCCCC--------------CCC----CcchhhhhHhhHHHHHHHHHHHHhhh----
Q 047109 269 ---------------LKWKREMYLNNQNA--------------EVS----ELDVHGILAYDTVWALAKASEKLKTE---- 311 (808)
Q Consensus 269 ---------------~~~~~~~~~~~~~~--------------~~~----~~~~~~~~~ydav~~~a~Al~~~~~~---- 311 (808)
+.|+..|+|..+.. ++. .........|+||+++|+|||++..+
T Consensus 328 ~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~ 407 (496)
T 3ks9_A 328 LKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG 407 (496)
T ss_dssp TTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35888899865321 110 00112346999999999999999642
Q ss_pred -------c--CChHHHHHHHHcCccccceeE-EEe-eCCcccCCccEEEEEeec--Cc---EEEEEEEe
Q 047109 312 -------I--SNETCYYKQILNSRFTGLSGD-FQL-INGKLTSSRAFEIVNVIG--KT---VKIVGFWT 364 (808)
Q Consensus 312 -------~--~~~~~l~~~l~~~~~~g~tG~-v~f-~~g~~~~~~~~~i~~~~~--~~---~~~vg~~~ 364 (808)
. -.+++|..+|++++|.+.+|. +.| ++|+... .|+|++|+. ++ +++||.|+
T Consensus 408 ~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~--~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 408 HVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPG--RYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp CSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCC--EEEEEEEEECC--CEEEEEEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccc--eEEEEEEEECCCCCEEEEEEEEEe
Confidence 0 156789999999999999997 999 9999998 999999983 33 78999998
No 15
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=3.3e-42 Score=374.42 Aligned_cols=318 Identities=18% Similarity=0.273 Sum_probs=266.0
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHH-hhhcCCeEEEEe-----cC
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLN-LMQNVDLQAIIC-----TE 74 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~-li~~~~v~aiiG-----~~ 74 (808)
+|+||+++|++ ..+.|+++|+++||++++..+++|+++..|+++||.++++++++ |+++ +|.|||| |.
T Consensus 5 ~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~-~V~aiiG~~~~~~~ 78 (384)
T 3qek_A 5 IVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISS-QVYAILVSHPPAPT 78 (384)
T ss_dssp EEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGGG-TEEEEEECC-----
T ss_pred EEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHHc-CceEEEEecCCCCc
Confidence 58999999998 46899999999999998766799999999999999999987666 7876 9999999 56
Q ss_pred CChhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccc
Q 047109 75 MTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGS 149 (808)
Q Consensus 75 ~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~ 149 (808)
|+..+.+++++++.+++|+|+++++++. +++ ++||+.|++. .++.++++++++++|++|++||+|++||.
T Consensus 79 -~s~~~~a~~~~~~~~~iP~is~~~~~~~-ls~~~~~~~~fr~~~~~~---~~~~a~~~~~~~~gw~~v~ii~~d~~~G~ 153 (384)
T 3qek_A 79 -DHLTPTPISYTAGFYRIPVIGLTTRMSI-YSDKSIHLSFLRTVPPYS---HQALVWFEMMRLFNWNHVILIVSDDHEGR 153 (384)
T ss_dssp ----CCHHHHHHHHTTTCCEEESSCCCGG-GGCSSSCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred -cchhHHHHHHHHhcCCCCEEecccCchh-ccCcccCCceEEecCChH---HHHHHHHHHHHHcCCeEEEEEEEcCcccH
Confidence 7888899999999999999999999999 886 8999999999 99999999999999999999999999999
Q ss_pred cCcHHHHHHhhhcCCcEE-----------EEE-------EecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHH
Q 047109 150 DNIIPYLFDSLHDNDIDI-----------ARR-------ITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLF 211 (808)
Q Consensus 150 ~~~~~~~~~~~~~~g~~i-----------~~~-------~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l 211 (808)
...+.|++.+++.|+++ .+. +.++....+..|+..++.+++++++|+|++++..+++..++
T Consensus 154 -~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~ 232 (384)
T 3qek_A 154 -AAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVY 232 (384)
T ss_dssp -HHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHH
T ss_pred -HHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 99999999999999753 211 11210011456899999999999999999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhh
Q 047109 212 LNAKKLGMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHG 291 (808)
Q Consensus 212 ~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 291 (808)
++|+++||++++++||+++.+.... ..... .+|++++..+.+.. .+
T Consensus 233 ~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~-~~g~lg~~~~~~~~----------------------------~~ 278 (384)
T 3qek_A 233 KSAAMLDMTGAGYVWLVGEREISGS-----ALRYA-PDGIIGLQLINGKN----------------------------ES 278 (384)
T ss_dssp HHHHHTTCSSTTCEEECCSGGGSGG-----GGSSC-CTTCEEEEETTTTC----------------------------HH
T ss_pred HHHHHcCCccCCeEEEEeccccccc-----ccccc-CCccEEEEEcCCCc----------------------------hh
Confidence 9999999988789999999876431 12234 78999998875432 26
Q ss_pred hhHhhHHHHHHHHHHHHhhh----------------cCChHHHHHHHHcCcc-ccceeEEEe-eCCcccCCccEEEEEee
Q 047109 292 ILAYDTVWALAKASEKLKTE----------------ISNETCYYKQILNSRF-TGLSGDFQL-INGKLTSSRAFEIVNVI 353 (808)
Q Consensus 292 ~~~ydav~~~a~Al~~~~~~----------------~~~~~~l~~~l~~~~~-~g~tG~v~f-~~g~~~~~~~~~i~~~~ 353 (808)
+++||||+++|+|++++..+ +..+..|.+.+++++| +|++|++.| ++|++... .|+|++++
T Consensus 279 ~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~-~~~I~~~~ 357 (384)
T 3qek_A 279 AHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA-QYSIMNLQ 357 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc-cEEEEEEc
Confidence 78999999999999998641 1256788899999998 999999999 99999555 99999999
Q ss_pred cCcEEEEEEEeC
Q 047109 354 GKTVKIVGFWTP 365 (808)
Q Consensus 354 ~~~~~~vg~~~~ 365 (808)
+.++++||.|++
T Consensus 358 ~~~~~~VG~w~~ 369 (384)
T 3qek_A 358 NRKLVQVGIFNG 369 (384)
T ss_dssp TTEEEEEEEECS
T ss_pred CCceEEEEEEeC
Confidence 999999999993
No 16
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.1e-37 Score=336.88 Aligned_cols=330 Identities=14% Similarity=0.141 Sum_probs=281.9
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKG-DPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~-~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+||||+++|+||+. |...+.|+++|++++| +++++++|++++.|+++ +|.++++++.+|+.+++|.+||||. +
T Consensus 5 ~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~-~ 81 (371)
T 4f06_A 5 TIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLY-F 81 (371)
T ss_dssp EEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECC-S
T ss_pred cEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecc-c
Confidence 59999999999986 8889999999999998 67888999999999975 8999999999999988999999999 9
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcH
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNII 153 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~ 153 (808)
|..+.++++++.+.+||+|+++++++. +++ ++||+.|++. .++.+++++++..+|+++++|++|+.||. ...
T Consensus 82 S~~~~a~~~~~~~~~vp~i~~~a~~~~-~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~g~k~vaii~~~~~~g~-~~~ 156 (371)
T 4f06_A 82 TPNAMAVAPLLQEAKVPMVVMNAATSS-ITEKSPYIVRTSFTMF---QNTVPAAKVAKQKGATKVAIAVSDYGPGI-DAE 156 (371)
T ss_dssp HHHHHHHGGGHHHHTCCEEESSCCCGG-GGGGCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHH
T ss_pred ccchHHHHHHHHhhcCCccccccccch-hcccCCcceecccchh---hhhhhhhhhhhhcCceEEEEEcCCcccch-hHH
Confidence 999999999999999999999999998 876 9999999999 99999999999999999999999999999 999
Q ss_pred HHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC-HHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 154 PYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS-HALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
+.+++.+++.|++|+..+.++. +..|+.+++.+++++++|+|++... ..++..+++++++.|+......++..+..
T Consensus 157 ~~~~~~~~~~g~~vv~~~~~~~---~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 157 TAFKKTFEAEGGKVVEAVRMPL---STTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHHTTCEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHHhcCCceEEEEecCc---ccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999988887 5679999999999999999988765 46788899999999997666666665543
Q ss_pred ccccccCCccccccccceeEEEeecc--CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHH-h
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYV--PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKL-K 309 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~-~ 309 (808)
...... ...... ..|++....+. .++|..++|.++|++.++... .++.+++.+||+++++++|+++. +
T Consensus 234 ~~~~~~--~~~~~~-~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~------~~~~~a~~~Yda~~~l~~Ai~~~ag 304 (371)
T 4f06_A 234 VTEPDL--PNIGEA-GLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD------EVTMTSVAAYDGARLIYKMIEATSG 304 (371)
T ss_dssp GCGGGH--HHHCGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG------GCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHH--Hhcccc-cCceEEeeccccCCCChhHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHHHHHHHHhcC
Confidence 322111 112233 56666655543 356889999999998876431 25668899999999999999964 5
Q ss_pred hhcCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEee
Q 047109 310 TEISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVI 353 (808)
Q Consensus 310 ~~~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~ 353 (808)
+. ++.++.++|++++|+|++|+++| .+++.... .+.|.+++
T Consensus 305 ~~--d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~-~~~i~~v~ 346 (371)
T 4f06_A 305 KS--DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQ-NVYLREVE 346 (371)
T ss_dssp SC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEEE-EEEEEEEE
T ss_pred CC--CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccC-CEEEEEEE
Confidence 55 89999999999999999999999 55544433 78888887
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.1e-37 Score=339.47 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=291.7
Q ss_pred CeEEEEEEecCCcc--hhhHHHHHHHHHHHHHhcCCCcc-eEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA--GKISNSCISMAISDFYALNTHYK-TRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~--g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|+++||+++|++| +++++++.|+++++.++++.+++|+.+++|.+||||. +|
T Consensus 5 ~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~-~s 83 (387)
T 3i45_A 5 AIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTF-LS 83 (387)
T ss_dssp CEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECC-SH
T ss_pred CEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCc-ch
Confidence 69999999999964 77889999999999999999999 9999999999999999999999999866999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~ 152 (808)
..+.++++++...+||+|++.++++. +++ ++||+.|++. .++.++++++.+++|+++++|+++++||. ..
T Consensus 84 ~~~~a~~~~~~~~~ip~i~~~~~~~~-l~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~-~~ 158 (387)
T 3i45_A 84 HVGLAVSDFARQRKVLFMASEPLTDA-LTWEKGNRYTYRLRPSTY---MQAAMLAAEAAKLPITRWATIAPNYEYGQ-SA 158 (387)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCCGG-GTTTTCCTTEEECSCCHH---HHHHHHHHHHTTSSCCEEEEECCSSHHHH-HH
T ss_pred HHHHHHHHHHHHcCceEEecCCCchh-hhhccCCCCEEEeCCChH---HHHHHHHHHHHHcCCCeEEEEeCCchHhH-HH
Confidence 99999999999999999999988887 762 9999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHhhhcC--CcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 153 IPYLFDSLHDN--DIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 153 ~~~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
.+.+++.+++. |++++....++. +..++.+.+++++++++|+|++.+...++..+++++++.|+.. .+++.+.
T Consensus 159 ~~~~~~~l~~~~~g~~vv~~~~~~~---~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~--~~~i~~~ 233 (387)
T 3i45_A 159 VARFKELLLAARPEVTFVAEQWPAL---YKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFA--GRQVVSM 233 (387)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCT---TCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSST--TCEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEeeecCCC---CCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCC--CCeEEee
Confidence 99999999998 899988777665 4568999999999999999999999999999999999999833 2444443
Q ss_pred ccc--cccccCCccccccccceeEEEe--eccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHH
Q 047109 231 STM--NFLHSMDSSVVESSMQGVLGFK--RYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASE 306 (808)
Q Consensus 231 ~~~--~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~ 306 (808)
... ..+... .... .+|++... ....+.|..++|.++|++.++.. ++.+++.+|||++++++|++
T Consensus 234 ~~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------p~~~~~~~Yda~~~~a~Al~ 301 (387)
T 3i45_A 234 LTGEPEYLNPL---KDEA-PEGWIVTGYPWYDIDTAPHRAFVEAYRARWKED--------PFVGSLVGYNTLTAMAVAFE 301 (387)
T ss_dssp EEESHHHHGGG---GGGC-CSSCEEEECCGGGCCCHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHh---hhhc-cCceEEecccccCCCCHHHHHHHHHHHHHHCCC--------CCcHHHHHHHHHHHHHHHHH
Confidence 321 111111 1122 45655442 22357889999999999988653 56689999999999999999
Q ss_pred HHhhhcCChHHHHHHHHcCccccceeEEEe-e-CCcccCCccEEEEEee-cCcEEEEEEEeCCCC
Q 047109 307 KLKTEISNETCYYKQILNSRFTGLSGDFQL-I-NGKLTSSRAFEIVNVI-GKTVKIVGFWTPTTR 368 (808)
Q Consensus 307 ~~~~~~~~~~~l~~~l~~~~~~g~tG~v~f-~-~g~~~~~~~~~i~~~~-~~~~~~vg~~~~~~~ 368 (808)
++++. ++..+.++|++++|+|++|++.| + +|+... ...|.+++ .+|...++.|....+
T Consensus 302 ~ag~~--~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 302 KAGGT--ESETLVETLKDMAFSTPMGPLSFRASDHQSTM--GAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp HHTSC--CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCC--CEEEEEEEEETTEEEEEEEEEECG
T ss_pred HhCCC--CHHHHHHHHhcCCCcCCCCCeEEcCCCCcccc--ceeEEEEEeeCCceeEEeeEEeCc
Confidence 99986 89999999999999999999999 5 566666 88888887 567888999986554
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-37 Score=333.96 Aligned_cols=336 Identities=17% Similarity=0.210 Sum_probs=293.2
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
|++||+++|+||+. |.....|+++|++++|+ ++++++++++.|+++++..+.+.+++|+++++|.+||||. ++
T Consensus 16 ~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~-~s 91 (366)
T 3td9_A 16 VVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEV-AS 91 (366)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS-SH
T ss_pred eEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccC-Cc
Confidence 68999999999986 88899999999999998 6679999999999999999999999999987799999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHH-HhcCCcEEEEEEe-cCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLI-RVFKWKHVILIYE-DNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll-~~~~w~~v~ii~~-d~~~g~~~~ 152 (808)
..+.++..++...+||+|++.++++. +++ ++||+.|++. .++.++++++ +++||+++++||. +++|+. ..
T Consensus 92 ~~~~~~~~~~~~~~iP~i~~~~~~~~-~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~-~~ 166 (366)
T 3td9_A 92 AHSLAIAPIAEENKVPMVTPASTNPL-VTQGRKFVSRVCFIDP---FQGAAMAVFAYKNLGAKRVVVFTDVEQDYSV-GL 166 (366)
T ss_dssp HHHHHHHHHHHHTTCCEEESSCCCGG-GTTTCSSEEESSCCHH---HHHHHHHHHHHHTSCCCEEEEEEETTCHHHH-HH
T ss_pred hhHHHHHHHHHhCCCeEEecCCCCcc-ccCCCCCEEEEeCCcH---HHHHHHHHHHHHhcCCcEEEEEEeCCCcHHH-HH
Confidence 99999999999999999999998888 765 9999999999 9999999998 6689999999987 678888 88
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+.+.+++.|++++... ++. +..++...++++++.++++|++.+...++..+++++++.|+. ..|+..+.+
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~---~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~ 239 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRS---GDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFT---GYILAGDGA 239 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECT---TCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCC---SEEEECGGG
T ss_pred HHHHHHHHHHCCCEEEEEE-eCC---CCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCC---ceEEeeCCc
Confidence 8999999999999998877 665 456888899999999999999999999999999999999983 457776665
Q ss_pred ccccccCCccccccccceeEEEeeccCC---cHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYVPA---SKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLK 309 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~ 309 (808)
... ... ...... .+|++....+.+. .+..++|.++|++.++.. ++.+++.+|||++++++|+++++
T Consensus 240 ~~~-~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~--------p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 240 DAP-ELI-EIGGEA-VEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGKE--------PAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp CST-HHH-HHHGGG-GTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCH-HHH-HHHhHH-hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCCC--------CchhHHHHHHHHHHHHHHHHHhC
Confidence 431 110 111223 6677766654433 688999999999998764 56789999999999999999999
Q ss_pred hhcCChHHHHHHHHcCc-cccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCC
Q 047109 310 TEISNETCYYKQILNSR-FTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTT 367 (808)
Q Consensus 310 ~~~~~~~~l~~~l~~~~-~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~ 367 (808)
+. ++..+.++|++++ |+|++|++.| ++|++.. .+.|+++++++++.|+.|++.+
T Consensus 309 ~~--~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~--~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 309 SF--DREKIAEEIRKTRNFNGASGIINIDENGDAIK--SVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp SC--CHHHHHHHHTTCCSEEETTEEECBCTTSCBCC--CEEEEEEETTEEEEEEEECGGG
T ss_pred CC--CHHHHHHHHHhCCCCcccceeeEECCCCCccC--ceEEEEEECCEEEEEEecChhh
Confidence 86 9999999999997 9999999999 9999998 8999999988899999998754
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=5.2e-38 Score=345.74 Aligned_cols=340 Identities=12% Similarity=0.070 Sum_probs=281.6
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSK-GDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~-~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+|+||+++|++|+. |...+.|+++|+++||+++|+++++|++++.|++ +++..+++++++|+.+++|.+||||. +
T Consensus 14 ~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~-~ 92 (419)
T 3h5l_A 14 PVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGY-N 92 (419)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSC-C
T ss_pred CEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccc-c
Confidence 69999999999976 8899999999999999999999999999999987 69999999999999977999999999 9
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCcccc--------c--ceeeeccCCchhhHHHHHHHHHHHhc--------CCcEE
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLT--------S--YSIQIDQDDEASQSQAKGIADLIRVF--------KWKHV 138 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls--------~--~~~r~~p~~~~~~~~~~a~~~ll~~~--------~w~~v 138 (808)
|..+.++++++..++||+|++++. +. ++ . ++||+.|++. .++.+++++++++ +|+++
T Consensus 93 s~~~~a~~~~~~~~~ip~i~~~~~-~~-~~~~~~~~~~~~~~~f~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 93 LENGTALHDVAADAGVIAMHANTV-AV-HDEMVKSDPDRYWGTFQYDPPET---LYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp SSCSCHHHHHHHHHTCEEEECCCC-HH-HHHHHHHCTTTCTTEEESSCCTH---HHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred chhHHHhHHHHHHcCCeEEEcCcc-hh-hhhhhhcCcccCceEEEeCCchH---HHHHHHHHHHHHHHhhccccCCCCEE
Confidence 999999999999999999997543 32 21 1 7999999999 9999999999876 89999
Q ss_pred EEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC-HHHHHHHHHHHHHc
Q 047109 139 ILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS-HALASHLFLNAKKL 217 (808)
Q Consensus 139 ~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~~l~~a~~~ 217 (808)
++|+++++||. ...+.|++.+++.|++|+..+.++. +..|+..++.+|+++++|+|++.+. ++++..+++++++.
T Consensus 168 ail~~~~~~g~-~~~~~~~~~~~~~g~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSV-NIANAIRDGAGEYGYDVSLFETVAI---PVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHH-HHHHHHHHHGGGGTCEEEEEEECCS---SCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhH-HHHHHHHHHHHHcCCeEEEEecCCC---CCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 99999999999 9999999999999999999888876 5578999999999999999999865 57899999999999
Q ss_pred CCCCCCeEEEEeCccccccccCCccccccccceeEEEeec-cCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhh
Q 047109 218 GMMSKGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRY-VPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYD 296 (808)
Q Consensus 218 gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 296 (808)
|+ +..|+.++.+... +.. ...... .+|++....+ ....+..++|.++|++.|+... .+.+++.+||
T Consensus 244 g~---~~~~~~~~~~~~~-~~~-~~~g~~-~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p-------~~~~a~~~Yd 310 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLA-AFR-DIAGDN-SVGVTYATVLGTLQDEMGDAFAKAYKERYGDLS-------STASGCQTYS 310 (419)
T ss_dssp CC---SCEEEECSGGGSH-HHH-HHHGGG-GTTCEEEESSCCCSSHHHHHHHHHHHHHHCTTS-------CHHHHHHHHH
T ss_pred CC---CceEEecCCCCcH-HHH-Hhhhhh-cCceEEeecCCCCCCHHHHHHHHHHHHHhCCCC-------CcchhHHHHH
Confidence 97 4567777665432 111 111122 5666554433 3466889999999999987641 2357899999
Q ss_pred HHHHHHHHHHHHhhh-----cCChHHHHHHHHcCccccceeEEEe-eCCcccC------------CccEEEEEeecCcEE
Q 047109 297 TVWALAKASEKLKTE-----ISNETCYYKQILNSRFTGLSGDFQL-INGKLTS------------SRAFEIVNVIGKTVK 358 (808)
Q Consensus 297 av~~~a~Al~~~~~~-----~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~------------~~~~~i~~~~~~~~~ 358 (808)
|++++++|+++++++ ..++.++.++|++++|+|++|++.| ++|+... . .+.|+|+++++++
T Consensus 311 a~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~-~~~i~q~q~g~~~ 389 (419)
T 3h5l_A 311 ALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGM-PHIFSQIFDKAED 389 (419)
T ss_dssp HHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSE-ECEEEECCCTTSC
T ss_pred HHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccC-CceEEEeeCCcee
Confidence 999999999998752 0167889999999999999999999 8888542 1 3568888877773
Q ss_pred EEEEEe
Q 047109 359 IVGFWT 364 (808)
Q Consensus 359 ~vg~~~ 364 (808)
.+..|.
T Consensus 390 ~~~V~P 395 (419)
T 3h5l_A 390 GVLIAP 395 (419)
T ss_dssp CEEEES
T ss_pred eEEECC
Confidence 333454
No 20
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.1e-37 Score=331.46 Aligned_cols=332 Identities=17% Similarity=0.202 Sum_probs=277.2
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+||||+++|+||+. |...++|+++|+++||+.||+++++|++++.|++++|..+++++.+|+.+++|.+|+||. +|
T Consensus 7 tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~-~s 85 (353)
T 4gnr_A 7 TIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPA-TS 85 (353)
T ss_dssp EEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCC-SH
T ss_pred eEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccc-cC
Confidence 59999999999987 889999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhc-CCcEEEEEEec-CCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVF-KWKHVILIYED-NTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~-~w~~v~ii~~d-~~~g~~~~ 152 (808)
..+.++.+++...++|+|+++++++. +++ ++||+.|++. .++.++++++... +++++++++++ ++||. ..
T Consensus 86 ~~~~a~~~~~~~~~vp~i~~~~~~~~-l~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~-~~ 160 (353)
T 4gnr_A 86 GATAAAVANATKAGVPLISPSATQDG-LTKGQDYLFIGTFQDS---FQGKIISNYVSEKLNAKKVVLYTDNASDYAK-GI 160 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEESSCCCTT-TTTTCTTEEECSCCHH---HHHHHHHHHHHHTSCCSEEEEEEETTCHHHH-HH
T ss_pred cccceehhhhhccCcceEeecccccc-cccCCccccccCCCcH---HHHHHHHHHHHHhcCCcEEEEEEcCchHHHH-HH
Confidence 99999999999999999999999998 886 9999999999 9999999998654 55566666654 35777 66
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+.+ +.|++++..+.++. +..|+.+++.+++++++|+|++.+...++..++++++++|+.. .++..+.+
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~ 231 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFVA---GDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDK---PIVGGDGF 231 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEECT---TCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCS---CEEECGGG
T ss_pred HHHHHH---HcCCEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCC---cEEEeccc
Confidence 666554 45789998888876 5678999999999999999999999999999999999999832 35555544
Q ss_pred ccccccCCccccccccceeEEEeecc---CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYV---PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLK 309 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~ 309 (808)
... .......... ..+.+....+. ..++..++|.++|++.++.. ++.+++++||+++++++|++++.
T Consensus 232 ~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~--------p~~~a~~~Yda~~~la~Ai~~a~ 301 (353)
T 4gnr_A 232 NGE-EFVQQATAEK-ASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEE--------PSTFAALAYDSVHLVANAAKGAK 301 (353)
T ss_dssp CSH-HHHHHHCTTT-CCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccc-hhhhhhhhhh-hcCccccccccCCCCCCHHHHHHHHHHHHHhCCC--------CChhHHHHHHHHHHHHHHHhcCC
Confidence 321 1100111222 45555554332 34678999999999999765 57789999999999999998764
Q ss_pred hhcCChHHHHHHHHcC-ccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEE
Q 047109 310 TEISNETCYYKQILNS-RFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFW 363 (808)
Q Consensus 310 ~~~~~~~~l~~~l~~~-~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~ 363 (808)
++..+.++|+++ +|+|++|++.| ++|++.. .+.++++++++|+.+...
T Consensus 302 ----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~~--~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 302 ----NSGEIKDNLAXTKDFEGVTGQTSFDADHNTVK--TAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp ----SHHHHHHHHHTCCCEEETTEEECCCTTSCCCC--CEEEEEEETTEEEEEEEE
T ss_pred ----CHHHHHHHHHhcCCCccCceeEEECCCcCCcC--CeEEEEEECCEEEEEEEe
Confidence 688899999987 59999999999 9999988 888999998888776543
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=1.2e-36 Score=327.55 Aligned_cols=338 Identities=13% Similarity=0.116 Sum_probs=288.2
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++|+++|+.++++++++.|+++++..+.+.+++|++ ++|.+||||. ++
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~-~s 79 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHA-NS 79 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECS-SH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCC-Cc
Confidence 69999999999974 8889999999999999999998899999999999999999999999999 4999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc----ceeeeccCCchhhHHHHHHHHHH-HhcCCcEEEEEEecCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS----YSIQIDQDDEASQSQAKGIADLI-RVFKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~----~~~r~~p~~~~~~~~~~a~~~ll-~~~~w~~v~ii~~d~~~g~~~~ 152 (808)
..+.++..++...+||+|++.++++. +++ ++||+.|++. .++.++++++ +++||+++++|+.++.+|. ..
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~~-~~ 154 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPV-FTERGLWNTFRTCGRDD---QQGGIAGKYLADHFKDAKVAIIHDKTPYGQ-GL 154 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGG-GGSSCCTTEEESSCCHH---HHHHHHHHHHHHHCTTCCEEEEECSSHHHH-HH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcH-hhcCCCCcEEEecCChH---HHHHHHHHHHHHhcCCCEEEEEeCCChHHH-HH
Confidence 99999999999999999999998888 775 8999999999 9999999965 5679999999999999999 89
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+++.+++.|++++....++. +..++...++++++.++++|++++....+..+++++++.|+. ..|+.++.+
T Consensus 155 ~~~~~~~l~~~g~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~ 228 (356)
T 3ipc_A 155 ADETKKAANAAGVTEVMYEGVNV---GDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLK---AKLVSGDGI 228 (356)
T ss_dssp HHHHHHHHHHTTCCCSEEEECCT---TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCC---CEEEECGGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCC---CcEEEeccc
Confidence 99999999999999877766655 456788899999999999999999999999999999999983 347776654
Q ss_pred ccccccCCccccccccceeEEEeecc-CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYV-PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE 311 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~ 311 (808)
... +.. ...... .+|++....+. ...|..++|.++|++. +.. ++.+++.+|||++++++|++++++.
T Consensus 229 ~~~-~~~-~~~g~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~~--------p~~~~~~~yda~~~~~~al~~ag~~ 296 (356)
T 3ipc_A 229 VSN-ELA-SIAGDA-VEGTLNTFGPDPTLRPENKELVEKFKAA-GFN--------PEAYTLYSYAAMQAIAGAAKAAGSV 296 (356)
T ss_dssp CSH-HHH-HHHGGG-GTTCEEEESCCGGGCGGGHHHHHHHHHT-TCC--------CCTTHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCH-HHH-HHhhHH-hCCEEEEecCCCCCChhHHHHHHHHHHc-CCC--------cchhHHHHHHHHHHHHHHHHHhCCC
Confidence 421 110 011122 56666555443 3467899999999887 433 4557999999999999999999886
Q ss_pred cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeec---CcEEEEEEEeCC
Q 047109 312 ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIG---KTVKIVGFWTPT 366 (808)
Q Consensus 312 ~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~---~~~~~vg~~~~~ 366 (808)
++..+.++|++.+|+|++|++.| ++|++... .+.|+++++ ++|+.+..|...
T Consensus 297 --~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~-~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 297 --EPEKVAEALKKGSFPTALGEISFDEKGDPKLP-GYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp --CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCC-CCEEEEEEECTTSSEEEEEC----
T ss_pred --CHHHHHHHHHhCCCCCcceeeEECCCCCccCC-CeEEEEEEECCCCcEEEEeccccc
Confidence 89999999999999999999999 99999876 899999995 679999998754
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2.3e-36 Score=327.54 Aligned_cols=327 Identities=16% Similarity=0.170 Sum_probs=283.4
Q ss_pred CeEEEEEEecCCcc----hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 1 EVHVGVILDMRSWA----GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 1 ~i~IG~i~~~~~~~----g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+|+||+++|++|+. |.....|+++|++++ +++++++++++++.|++++|..+++.+++|+.+++|.+||||. +
T Consensus 4 ~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~-~ 80 (375)
T 3i09_A 4 SVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGT-N 80 (375)
T ss_dssp SEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECS-C
T ss_pred CeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCC-C
Confidence 69999999999974 677999999999999 4678889999999999999999999999999967999999999 9
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccC
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDN 151 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~ 151 (808)
|..+.++.+++...+||+|+++++++. +++ ++||+.|++. .++.++++++.+++|+++++|++++.||. .
T Consensus 81 s~~~~a~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~-~ 155 (375)
T 3i09_A 81 SATALSMNQVAAEKKKVYINIGAGADT-LTNEQCTPYTVHYAYDTM---ALAKGTGSAVVKQGGKTWFFLTADYAFGK-A 155 (375)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCCCGG-GGTTTCCTTEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-H
T ss_pred cHHHHHHHHHHHHcCceEEEeCCCchh-hhcccCCCcEEEeeCChH---HHHHHHHHHHHHcCCceEEEEecccHHHH-H
Confidence 999999999999999999999988888 764 8999999998 99999999999999999999999999999 9
Q ss_pred cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 152 IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
..+.+++.+++.|++++..+.++. +..|+...+.+++++++|+|++.+...++..++++++++|+..+. .++..+.
T Consensus 156 ~~~~~~~~~~~~G~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~ 231 (375)
T 3i09_A 156 LEKNTADVVKANGGKVLGEVRHPL---SASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLM 231 (375)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECT---TCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSC
T ss_pred HHHHHHHHHHHcCCEEeeeeeCCC---CCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEeccc
Confidence 999999999999999998877766 456888999999999999999999999999999999999996555 4444443
Q ss_pred cccccccCCccccccccceeEEEeeccC-CcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhh
Q 047109 232 TMNFLHSMDSSVVESSMQGVLGFKRYVP-ASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKT 310 (808)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~ 310 (808)
+...... -.... .+|++....+.+ .++..++|.++|++.|+.. ++.+++.+|||++++++|++++++
T Consensus 232 ~~~~~~~---~~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~--------p~~~a~~~Yda~~~~~~Al~~ag~ 299 (375)
T 3i09_A 232 FINDVHA---LGLET-TQGLVLTDSWYWNRDQASRQWAQRYFAKMKKM--------PSSLQAADYSSVTTYLKAVQAAGS 299 (375)
T ss_dssp CHHHHHH---HCHHH-HTTCEEEESCCTTSSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhHhh---hChhh-hCCeeeeeeecCCCCHHHHHHHHHHHHHHCCC--------CcHHHHHHHHHHHHHHHHHHHhCC
Confidence 3321111 11123 566666554433 3688999999999998754 567899999999999999999998
Q ss_pred hcCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecC
Q 047109 311 EISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGK 355 (808)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~ 355 (808)
. ++..|.++|++++|+|++|.+.| ++|++.. .+.|++++++
T Consensus 300 ~--~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~--~~~i~~v~~~ 341 (375)
T 3i09_A 300 T--DSDKVMAQLKKMKIDDFYAKGYIRTDGSMIH--DMYLMEVKKP 341 (375)
T ss_dssp C--CHHHHHHHHTTSCEESSSCEEEECTTSBEEC--CEEEEEECCG
T ss_pred C--CHHHHHHHHhCCCccCCCCceEECCCCCeee--eeEEEEEecc
Confidence 6 99999999999999999999999 9999987 8999999854
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=5.8e-36 Score=322.39 Aligned_cols=340 Identities=11% Similarity=0.103 Sum_probs=290.2
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++|+++|++++++++++.|+++++..+.+.+++++.+++|.+||||. ++
T Consensus 4 ~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 82 (358)
T 3hut_A 4 ALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF-SS 82 (358)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS-SH
T ss_pred cEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC-Cc
Confidence 68999999999864 888999999999999999999999999999999999999999999999667999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 154 (808)
..+.++..++...+||+|++.++++. +++ ++||+.|++. .++.++++++...||+++++|+.++.+|. ...+
T Consensus 83 ~~~~~~~~~~~~~~iP~v~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~~~ 157 (358)
T 3hut_A 83 TVSMAAGSIYGKEGMPQLSPTAAHPD-YIKISPWQFRAITTPA---FEGPNNAAWMIGDGFTSVAVIGVTTDWGL-SSAQ 157 (358)
T ss_dssp HHHHHHHHHHHHHTCCEEESSCCCGG-GTTSCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCcEEecCCCCcc-cccCCCeEEEecCChH---HHHHHHHHHHHHcCCCEEEEEecCcHHHH-HHHH
Confidence 99999999999999999999988888 775 8999999999 99999999998889999999999999999 8999
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMN 234 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 234 (808)
.+++.+++.|++++....++. +..++...++++++.++++|++.++...+..+++++++.|+. ..|+..+.+..
T Consensus 158 ~~~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~---~p~~~~~~~~~ 231 (358)
T 3hut_A 158 AFRKAFELRGGAVVVNEEVPP---GNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSA---LPVYGSSALYS 231 (358)
T ss_dssp HHHHHHHHTTCEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCC---CCEEECGGGCS
T ss_pred HHHHHHHHcCCEEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCC---CcEEecCcccC
Confidence 999999999999988766665 445778889999888999999999999999999999999983 34777665542
Q ss_pred ccccCCccccccccceeEEEeeccC--CcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhhc
Q 047109 235 FLHSMDSSVVESSMQGVLGFKRYVP--ASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTEI 312 (808)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~ 312 (808)
. ... ...... .+|++....+.+ ..|..++|.+.|++.++.. ++.+++.+|||++++++|++++++.
T Consensus 232 ~-~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------p~~~~~~~yda~~~~~~al~~ag~~- 299 (358)
T 3hut_A 232 P-KFI-DLGGPA-VEGVRLATAFVLGASDPVVVEFVSAYETLYGAI--------PTLFAAHGYDAVGIMLAAVGRAGPE- 299 (358)
T ss_dssp H-HHH-HHHGGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred H-HHH-HHhHHh-hCCeEEEeccCCCCCCHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 1 111 111123 667777665543 5688999999999988763 5678999999999999999999987
Q ss_pred CChHH-HHHHHHcC-ccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCC
Q 047109 313 SNETC-YYKQILNS-RFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPT 366 (808)
Q Consensus 313 ~~~~~-l~~~l~~~-~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~ 366 (808)
++.+ +.++|+++ +|+|++|++.| ++|++... .+.|+++++++|+.+..+.++
T Consensus 300 -~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~-~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 300 -VTRESLRDALAATDRYAGVTGITRFDPETRETTK-ILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp -CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEE-CCEEEEEETTEEEEC------
T ss_pred -ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCC-ceEEEEEECCEEEEecccccc
Confidence 8888 99999999 89999999999 99998433 899999998888888766554
No 24
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=4.3e-36 Score=325.02 Aligned_cols=326 Identities=12% Similarity=0.108 Sum_probs=270.7
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHh-cCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYA-LNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~-~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+|+||+++|++|+. |.....|+++|++++|+ .+++++++|++++.|++++|..+++++++|+.+++|.+||||. +
T Consensus 4 ~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~-~ 82 (374)
T 3n0x_A 4 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS-S 82 (374)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS-S
T ss_pred CEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC-C
Confidence 69999999999986 88899999999999998 6788889999999999999999999999999877999999999 9
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccC
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDN 151 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~ 151 (808)
|..+.++++++..+++|+|++.++++. +++ ++||+.|++. .++.+++.++++++| ++++|++|++||. .
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~~~-~v~ii~~~~~~g~-~ 156 (374)
T 3n0x_A 83 SAAALADLPVAEENKKILIVEPAVADQ-ITGEKWNRYIFRTGRNSS---QDAISNAVAIGKQGV-TIATLAQDYAFGR-D 156 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGG-GGTTTCCTTEEECSCCHH---HHHHHHHHHHCCTTE-EEEEEEESSHHHH-H
T ss_pred cHHHHHHHHHHHHcCccEEEcCCCchh-hhcCCCCCeEEEccCCch---hHHHHHHHHHhccCC-EEEEEeCCchHHH-H
Confidence 999999999999999999998887777 774 8999999998 999999988888998 8999999999999 9
Q ss_pred cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCC-----CeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 047109 152 IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSE-----TKVFVVHMSHALASHLFLNAKKLGMMSKGYSW 226 (808)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~ 226 (808)
..+.+++.+++.|++|+..+.++. +..|+.+++++|++++ +|+|++.+.+... .+.++.++++...++.+
T Consensus 157 ~~~~~~~~~~~~G~~vv~~~~~~~---~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~ 231 (374)
T 3n0x_A 157 GVAAFKEALAKTGATLATEEYVPT---TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIEL 231 (374)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECT---TCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEE
T ss_pred HHHHHHHHHHHcCCEEeeeecCCC---CCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCee
Confidence 999999999999999999888876 5568999999999888 9999987443221 23455666654444555
Q ss_pred EEeCccccccccCCccccccccceeEEEee---ccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHH
Q 047109 227 IVTASTMNFLHSMDSSVVESSMQGVLGFKR---YVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAK 303 (808)
Q Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~ 303 (808)
+..+...... ..... ..|+.+... ..++.+..++|.++|++.|+.. ++.+++.+||+++++++
T Consensus 232 ~~~~~~~~~~-----~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~--------p~~~a~~~Yda~~~l~~ 297 (374)
T 3n0x_A 232 STGGNILPAL-----AAYKR-LPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAP--------PDFFTAGGFSAAMAVVT 297 (374)
T ss_dssp EECCCCTTGG-----GGGGG-STTCEEEESCCTTSCCSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHH
T ss_pred eeccccchhh-----hhhhh-hcCccccceeccCCCCCHHHHHHHHHHHHHHCCC--------CChhHHHHHHHHHHHHH
Confidence 4433322111 11122 344444433 2345788999999999998753 57789999999999999
Q ss_pred HHHHHhhhcCChHHHHHHHHcCccccceeEEEe-e-CCcccCCccEEEEEeecCc
Q 047109 304 ASEKLKTEISNETCYYKQILNSRFTGLSGDFQL-I-NGKLTSSRAFEIVNVIGKT 356 (808)
Q Consensus 304 Al~~~~~~~~~~~~l~~~l~~~~~~g~tG~v~f-~-~g~~~~~~~~~i~~~~~~~ 356 (808)
|++++++. ++..+.++|++++|+|++|++.| + +|+... .+.|++++.++
T Consensus 298 Al~~ag~~--~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~~ 348 (374)
T 3n0x_A 298 AVQKAKST--DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQ--SMYHFKVKVDP 348 (374)
T ss_dssp HHHHHTSC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEEC--CEEEEEEECCT
T ss_pred HHHHhCCC--CHHHHHHHHhcCCccCCCCCEEECcccCcccc--ceEEEEEEeCC
Confidence 99999986 99999999999999999999999 4 667766 89999998543
No 25
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=4.7e-36 Score=325.53 Aligned_cols=329 Identities=17% Similarity=0.147 Sum_probs=282.5
Q ss_pred CeEEEEEEecCCcc----hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 1 EVHVGVILDMRSWA----GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 1 ~i~IG~i~~~~~~~----g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+|+||+++|++|+. |.....|+++|++++ +++++++++++++.|++++|..+.+.+++|+++++|.+||||. +
T Consensus 6 ~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~-~ 82 (379)
T 3n0w_A 6 QVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVV-N 82 (379)
T ss_dssp CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECC-C
T ss_pred cEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCC-C
Confidence 68999999999974 677899999999999 4678889999999999999999999999999967999999999 9
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccC
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDN 151 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~ 151 (808)
|..+.++++++..++||+|+++++++. +++ ++||+.|++. .++.++++++.++||+++++|++|+.||. .
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~-~ 157 (379)
T 3n0w_A 83 SGTALAINNLVKDKKKLAFITAAAADQ-IGGTECNGYGIGFLYNFT---SIVKTVVQAQLAKGYKTWFLMLPDAAYGD-L 157 (379)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCCCTT-TTTTTCCSSEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-H
T ss_pred cHHHHHHHHHHHHcCceEEEcCCCchh-hhcccCCCcEEEEeCChH---HHHHHHHHHHHHcCCcEEEEEecccchhH-H
Confidence 999999999999999999999888888 764 8999999998 99999999999999999999999999999 9
Q ss_pred cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 152 IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
..+.+++.+++.|++++..+.++. +..|+.+.+.+++++++|+|++.+...++..++++++++|+..+. .++.+..
T Consensus 158 ~~~~~~~~~~~~G~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 233 (379)
T 3n0w_A 158 MNAAIRRELTAGGGQIVGSVRFPF---ETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKT-QKVGGMI 233 (379)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSS-CEEECCB
T ss_pred HHHHHHHHHHHcCCEEEEEEeCCC---CCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCC-cEEEecc
Confidence 999999999999999998877776 456888999999999999999999999999999999999995443 3444444
Q ss_pred cccccccCCccccccccceeEEEeeccC-CcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhh
Q 047109 232 TMNFLHSMDSSVVESSMQGVLGFKRYVP-ASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKT 310 (808)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~ 310 (808)
+... +. ..-.... .+|++....+.+ ..+..++|.++|++.|+.. ++.+++.+||+++++++|++++++
T Consensus 234 ~~~~-~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~--------p~~~~~~~Yda~~~~~~Al~~ag~ 302 (379)
T 3n0w_A 234 DILT-DV-KSAGLRV-MQGQEYATSFYWNMDDRTRAFAKRFYAKMGKM--------PTNNQAGGYSAALQYLKAVNAIGS 302 (379)
T ss_dssp CCHH-HH-HHHCHHH-HTTCEEEESCCTTSSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchH-HH-HhhCHHh-hCCeEEEeeecCCCCHHHHHHHHHHHHHHCCC--------CChHHHHHHHHHHHHHHHHHHhCC
Confidence 3321 11 0111123 567766555433 3688999999999998754 567899999999999999999998
Q ss_pred hcCChHHHHHHHHcCccccceeE-EEe-eCCcccCCccEEEEEeecCc
Q 047109 311 EISNETCYYKQILNSRFTGLSGD-FQL-INGKLTSSRAFEIVNVIGKT 356 (808)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~g~tG~-v~f-~~g~~~~~~~~~i~~~~~~~ 356 (808)
. ++..+.++|++++|+|..|. +.| ++|++.. .+.|+++++++
T Consensus 303 ~--~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~--~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 K--DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLVR--DMYLVRAKKPE 346 (379)
T ss_dssp C--CHHHHHHHHTTCCBCSSSCCSBEECTTSBEEC--CEEEEEECCGG
T ss_pred C--CHHHHHHHHhcCCccccCCCceeECCCCCccc--ceEEEEEEchh
Confidence 6 99999999999999999887 899 9999987 89999998543
No 26
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=2.1e-36 Score=323.54 Aligned_cols=313 Identities=17% Similarity=0.229 Sum_probs=242.0
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRD-SKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d-~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
+.||++|..+.. +.+++-|+++.|.-. .+.++..++.. +.+||..+..++|+++..++|.||||+..++..+
T Consensus 5 ~~v~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a 77 (364)
T 3qel_B 5 IGIAVILVGTSD-----EVAIKDAHEKDDFHH--LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEA 77 (364)
T ss_dssp EEEEEEEESSCC-----HHHHTC-----------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTH
T ss_pred eEEEEEEcccch-----hhhhccccCcccccc--CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchH
Confidence 679999976553 789999999999643 23566655443 6689999999999999877899988654044445
Q ss_pred HH--HHHhcCCCCccEEeccCCCC-ccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCc
Q 047109 81 HI--LAEIGSKAKIPVISLYATLP-SSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 81 ~~--~~~~~~~~~iP~is~~~~~~-~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~ 152 (808)
.+ ++.+++.++||+|++++++| . |++ +|||+.|+|. .++.++++++++|||++|++||+|+ .|
T Consensus 78 ~a~~v~~i~~~~~iP~IS~~at~~~~-lsd~~~~p~f~Rt~psd~---~q~~ai~~ll~~fgW~~V~iI~~d~-~g---- 148 (364)
T 3qel_B 78 IAQILDFISAQTLTPILGIHGGSSMI-MADKDESSMFFQFGPSIE---QQASVMLNIMEEYDWYIFSIVTTYF-PG---- 148 (364)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGGGGSC-CSSCCTTCCEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESC-TT----
T ss_pred HHHHHHHHHhccCCCEEEeecCCCCc-CCCcccCceEEEcCCChH---HHHHHHHHHHHHCCCeEEEEEEeCC-cc----
Confidence 55 89999999999999999988 7 886 8999999999 9999999999999999999999885 33
Q ss_pred HHHHHHhhhc----CCcEEEEEEecCCCCCChHHHHHHH-HHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 153 IPYLFDSLHD----NDIDIARRITISMSSNTDDQVIEKL-SMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 153 ~~~~~~~~~~----~g~~i~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.+.|.+.+++ .++|+.+...++. ..+..++...+ ++++++++++||++|+.+.+..++++|.++||++++|+||
T Consensus 149 ~~~~~~~l~~~~~~~~ici~~~~~i~~-~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 149 YQDFVNKIRSTIENSFVGWELEEVLLL-DMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEEEEEEE-CTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEEEcc-CCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 2444444444 4458777666654 33445677788 6899999999999999999999999999999999999999
Q ss_pred EeCccccccccCCccccccccceeEEEeeccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHH
Q 047109 228 VTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEK 307 (808)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~ 307 (808)
+++.+....+... .+. ..|++++.+.. |+ ....+++||||+++|+|+++
T Consensus 228 ~t~~~~~~~~~~~---~~~-~~g~~~~~~~~------------W~---------------~~~~~~~yDaV~~~A~A~~~ 276 (364)
T 3qel_B 228 VPSLVAGDTDTVP---SEF-PTGLISVSYDE------------WD---------------YGLPARVRDGIAIITTAASD 276 (364)
T ss_dssp ECHHHHCSTTCCC---TTS-CTTCEECCBCT------------TT---------------SCHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCccccc---ccC-CCceEEEeecc------------ch---------------hhHHHHHHHHHHHHHHHHHH
Confidence 9998654333221 122 67888877643 21 11467899999999999998
Q ss_pred Hhhh------------------cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEee-cCcEEEEEEEeC
Q 047109 308 LKTE------------------ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVI-GKTVKIVGFWTP 365 (808)
Q Consensus 308 ~~~~------------------~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~-~~~~~~vg~~~~ 365 (808)
+..+ +..|..|.++|++++|+|. ++.| ++|++..+ .|+|++++ +.+|++||.|++
T Consensus 277 ~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~-~~~Iinl~~~~~~~~VG~W~~ 351 (364)
T 3qel_B 277 MLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHP-KLVIILLNKERKWERVGKWKD 351 (364)
T ss_dssp HHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSC-CEEEEEECTTSCEEEEEEECS
T ss_pred HHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccc-eEEEEEEcCCCCcEEEEEECC
Confidence 7542 1267789999999999997 8999 99999987 99999999 678999999983
No 27
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=4.5e-35 Score=319.15 Aligned_cols=342 Identities=14% Similarity=0.155 Sum_probs=284.5
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCC--cce--EEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEec
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTH--YKT--RLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICT 73 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~--l~~--~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~ 73 (808)
+|+||+++|++|+. |.....|+++|+++||++||+ .++ +|++++.|+++++..+.+.+++|+.+++|.+|||
T Consensus 4 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG- 82 (391)
T 3eaf_A 4 TINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG- 82 (391)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE-
T ss_pred cEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE-
Confidence 58999999999975 888999999999999999999 678 9999999999999999999999996669999999
Q ss_pred CCChhHHHHHHHhcCCCCccEEeccCCCCccccc-ceeeeccCCchhhHHHHHHHHHHHh-cCCcEEEEEEe-cCCcccc
Q 047109 74 EMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-YSIQIDQDDEASQSQAKGIADLIRV-FKWKHVILIYE-DNTWGSD 150 (808)
Q Consensus 74 ~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-~~~r~~p~~~~~~~~~~a~~~ll~~-~~w~~v~ii~~-d~~~g~~ 150 (808)
. +|..+.++.+++...+||+|+++++++. ... ++||+.|++. .++.++++++.. +||++|++|++ ++.||.
T Consensus 83 ~-~s~~~~a~~~~~~~~~iP~i~~~~~~~~-~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~- 156 (391)
T 3eaf_A 83 W-GTADTEKLSDQVDTDKITYISASYSAKL-LVKPFNFYPAPDYS---TQACSGLAFLASEFGQGKLALAYDSKVAYSR- 156 (391)
T ss_dssp C-CHHHHHHHHHHHHHHTCEEEESCCCGGG-TTSTTEECSSCCHH---HHHHHHHHHHHHHHCSEEEEEEECTTCHHHH-
T ss_pred c-CcHHHHHHHHHHhhcCCeEEecccchhh-cCCCcEEEeCCCHH---HHHHHHHHHHHHhcCCCEEEEEEecCChhHH-
Confidence 8 8889999999999999999998876544 323 9999999999 999999999876 79999999999 899999
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHH--hcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSM--LKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
...+.+++.+++.|++++....++. +..++...+.+ ++++++++|++.++...+..+++++++.|+. ..++.
T Consensus 157 ~~~~~~~~~l~~~G~~v~~~~~~~~---~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~---~~~~~ 230 (391)
T 3eaf_A 157 SPIGAIKKAAPSLGLQVVGDYDLPL---RATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLD---AFLLT 230 (391)
T ss_dssp TTHHHHHHHTGGGTEEEEEEEECCT---TCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCC---CEEEE
T ss_pred HHHHHHHHHHHHcCCceeeeeccCC---CCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCC---ceEEE
Confidence 9999999999999999998877765 55699999999 9999999999999999999999999999983 23455
Q ss_pred eCccccccccCCccccccccce-eEEEeecc-----CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHH
Q 047109 229 TASTMNFLHSMDSSVVESSMQG-VLGFKRYV-----PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALA 302 (808)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a 302 (808)
++.... .... ...... .+| ++....+. .+.+. .+|.++|++.|+...| ..+.+++.+||++++++
T Consensus 231 ~~~~~~-~~~~-~~~g~~-~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p-----~~~~~~~~~yda~~~l~ 301 (391)
T 3eaf_A 231 NVWGFD-ERSP-QLIGEG-GYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSED-----QINLRVVQGFVNVWLLI 301 (391)
T ss_dssp CGGGCS-TTHH-HHHCGG-GTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGG-----GCCHHHHHHHHHHHHHH
T ss_pred eccCCC-HHHH-Hhhhhh-ccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCc-----ccccHHHHHHHHHHHHH
Confidence 443221 1111 111233 677 66665544 34455 6799999998873211 12468999999999999
Q ss_pred HHHHHH---h--hhcCChHHHHHHHHcCccc--ccee-EEEe-eCCcccCCccEEEEEe-ecCcEEEEEEEeCCC
Q 047109 303 KASEKL---K--TEISNETCYYKQILNSRFT--GLSG-DFQL-INGKLTSSRAFEIVNV-IGKTVKIVGFWTPTT 367 (808)
Q Consensus 303 ~Al~~~---~--~~~~~~~~l~~~l~~~~~~--g~tG-~v~f-~~g~~~~~~~~~i~~~-~~~~~~~vg~~~~~~ 367 (808)
+|++++ + +. ++..+.++|++.+|+ |++| ++.| ++|.+... .+.|+++ ++++|+.++.|....
T Consensus 302 ~Al~~a~~~g~~~~--~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~-~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 302 KAIESVTSQDLQER--GGEALKEALEANTFDLGGITADTIDYEPGFHLAYR-KVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp HHHTTSCHHHHHHH--THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCC-CEEEEEECTTSSEEEEEEECCCT
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcce-EEEEEEEecCCEEEEeeeecCcc
Confidence 999999 7 65 899999999998898 9999 9999 65544443 8999999 677799999997543
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-35 Score=323.32 Aligned_cols=346 Identities=10% Similarity=0.035 Sum_probs=288.8
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++|+++|++++++++++.|+++++.++.+.+++|+++++|.+||| . ++
T Consensus 7 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~-~s 84 (392)
T 3lkb_A 7 QVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-Y-AT 84 (392)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-C-CH
T ss_pred ceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-C-Cc
Confidence 58999999999975 8889999999999999999999999999999999999999999999999779999999 7 88
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc----ceeeeccCCchhhHHHHHHHHHHHh-cCCcEEEEEEecCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS----YSIQIDQDDEASQSQAKGIADLIRV-FKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~----~~~r~~p~~~~~~~~~~a~~~ll~~-~~w~~v~ii~~d~~~g~~~~ 152 (808)
..+.++..++...+||+|+++++.+. ... ++||+.|++. .++.++++++.. +||+++++|++++.||. ..
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~~~~-~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~g~-~~ 159 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMHIEL-IDPPNNDYIFLPTTSYS---EQVVALLEYIAREKKGAKVALVVHPSPFGR-AP 159 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCCGGG-GSSSSCTTBCEEECCHH---HHHHHHHHHHHHHCTTCEEEEEECSSHHHH-TT
T ss_pred HHHHHHHHHHHhCCceEEecccChhh-ccCCCCCceEecCCChH---HHHHHHHHHHHHhCCCCEEEEEEeCCchhh-hH
Confidence 88999999999999999998765444 331 8999999999 999999998866 69999999999999999 99
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+++.+++.|++++....++. +..++...+.++++.++++|++++....+..+++++++.|+. ..|+.++.+
T Consensus 160 ~~~~~~~l~~~G~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~ 233 (392)
T 3lkb_A 160 VEDARKAARELGLQIVDVQEVGS---GNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLK---MRHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCT---TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC---CEEEECGGG
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC---CCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---ceEEEecCc
Confidence 99999999999999988777765 456888899999999999999999999999999999999982 356666543
Q ss_pred ccccccCCccccccccceeEEEeeccC--CcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYVP--ASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKT 310 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~ 310 (808)
... ... ...... .+|++....+.. +.+..++|.++|+++|+..+. ...+.+++.+||+++++++|++++++
T Consensus 234 ~~~-~~~-~~~g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~----~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGP-DLI-ALAGDA-AEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPEN----FIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSH-HHH-HHHGGG-GTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHH----HHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccH-HHH-Hhhhhh-hcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcc----cccchhHHHHHHHHHHHHHHHHHhhc
Confidence 321 111 111123 667776665432 345678999999998875310 00123478999999999999999987
Q ss_pred ----hcCChHHHHHHHHcCc----cc-------cceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeCCCCC
Q 047109 311 ----EISNETCYYKQILNSR----FT-------GLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTPTTRI 369 (808)
Q Consensus 311 ----~~~~~~~l~~~l~~~~----~~-------g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~~~~~ 369 (808)
. ++.++.++|++++ |+ |++|++.| ++|++... .+.++++++++|+.|+.|.+..++
T Consensus 307 ~~~~~--~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~-~~~i~~~~~g~~~~v~~w~~~~~~ 378 (392)
T 3lkb_A 307 RFKRI--TNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAE-GLRILEAKGGRFVPVTEPFTSALF 378 (392)
T ss_dssp HHSSC--CHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEEC-CBEEEEEETTEEEECSCCBCCHHH
T ss_pred cCCCC--CHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcc-cEEEEEEeCCEEEEeccccchhHH
Confidence 5 8999999999997 98 99999999 77776554 899999999899999999876544
No 29
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=4.1e-35 Score=317.92 Aligned_cols=337 Identities=14% Similarity=0.157 Sum_probs=289.9
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++| +++.++++++++.|+++++.++.+.+++++++++|.+|||+. ++
T Consensus 16 ~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 92 (375)
T 4evq_A 16 ALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTV-HS 92 (375)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECS-SH
T ss_pred CeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCC-cc
Confidence 58999999999864 8889999999999998 556669999999999999999999999999877999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc-----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS-----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~ 152 (808)
..+.++..++...+||+|++.++++. +++ ++||+.|++. .++.++++++.++||+++++|++++.+|. ..
T Consensus 93 ~~~~~~~~~~~~~~iP~v~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~ 167 (375)
T 4evq_A 93 GVAMAMVKIAREDGIPTIVPNAGADI-ITRAMCAPNVFRTSFANG---QIGRATGDAMIKAGLKKAVTVTWKYAAGE-EM 167 (375)
T ss_dssp HHHHHHHHHHHHHCCCEEESSCCCGG-GGTTTCCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HH
T ss_pred HHHHHHHHHHHHcCceEEecCCCChh-hcccCCCCCEEEeeCChH---hHHHHHHHHHHHcCCcEEEEEecCchHHH-HH
Confidence 99999999999999999999988887 764 8999999999 99999999999999999999999999998 88
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+++.+++.|++++....++. +..++...++++++.++++|++.+.+..+..+++++++.|+. ..|+.++ +
T Consensus 168 ~~~~~~~l~~~G~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~---vp~~~~~-~ 240 (375)
T 4evq_A 168 VSGFKKSFTAGKGEVVKDITIAF---PDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLG---IPLWGPG-F 240 (375)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCC---CCEEEEG-G
T ss_pred HHHHHHHHHHcCCeEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---ceEEecC-c
Confidence 99999999999999987777765 445788889999888999999999999999999999999983 3355543 3
Q ss_pred ccccccCCccccccccceeEEEeeccC--CcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYVP--ASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKT 310 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~ 310 (808)
... ... ...... .+|++....+.+ +.+..++|.++|++.++.. ++.+++.+||+++++++|+++++.
T Consensus 241 ~~~-~~~-~~~g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------p~~~~~~~yda~~~~~~al~~~g~ 309 (375)
T 4evq_A 241 LTD-GVE-AAAGPA-GDGIKTVLHYVSDLDNAENQAFVKSFEAAYKIP--------PDVFAVQGWDAGQLLDAGVKAVGG 309 (375)
T ss_dssp GTT-TTH-HHHGGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCH-HHH-Hhhhhh-cCCeEEeeccCCCCCCHHHHHHHHHHHHHHCCC--------CcHHHHHHHHHHHHHHHHHHHhCC
Confidence 211 111 111233 677777665543 4689999999999988754 567899999999999999999986
Q ss_pred hcCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEeC
Q 047109 311 EISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWTP 365 (808)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~~ 365 (808)
...++..+.++|++++|+|++|++.| ++|++.. .+.|+++++++|+.|+.+.+
T Consensus 310 ~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~--~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 310 DVAKRKELNAAMAAASFASPRGPFKLSAAHNPVQ--NFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp CTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBCC--CEEEEEEETTEEEEEEEEEC
T ss_pred CCCCHHHHHHHHhcCCcccCCcceeECCCCCccc--cEEEEEEECCCcEEeeehhh
Confidence 21289999999999999999999999 9999987 99999999999999998864
No 30
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=2.5e-35 Score=315.95 Aligned_cols=333 Identities=16% Similarity=0.155 Sum_probs=281.0
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|+++||++||+.+++|++++.|+++++..+.+.+++++++ +|.+|||+. ++
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~-~s 79 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHL-CS 79 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCS-SH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhC-CCCEEEcCC-Cc
Confidence 68999999999864 77889999999999999999977999999999999999999999999976 999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc----ceeeeccCCchhhHHHHHHHHHH-HhcCCcEEEEEEecCCccccCc
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS----YSIQIDQDDEASQSQAKGIADLI-RVFKWKHVILIYEDNTWGSDNI 152 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~----~~~r~~p~~~~~~~~~~a~~~ll-~~~~w~~v~ii~~d~~~g~~~~ 152 (808)
..+.++..++...++|+|++.++++. +++ ++||+.|++. .++.++++++ +++||+++++|+.++.+|. ..
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~-~~ 154 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPE-LTQRGYQHIMRTAGLDS---SQGPTAAKYILETVKPQRIAIIHDKQQYGE-GL 154 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGG-GGSSCCSSEEECSCCGG---GHHHHHHHHHHHTTCCSSEEEEECSSHHHH-HH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChH-HhcCCCCcEEeccCChH---HHHHHHHHHHHHhcCCCeEEEEECCCchHH-HH
Confidence 88888889999999999999888877 764 8999999999 9999999998 5579999999999888888 88
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 047109 153 IPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAST 232 (808)
Q Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 232 (808)
.+.+++.+++.|++++....++. +..++...++++++.++++|++.+....+..+++++++.|+.. .|+.++.+
T Consensus 155 ~~~~~~~l~~~g~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 228 (346)
T 1usg_A 155 ARSVQDGLKAANANVVFFDGITA---GEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEGV 228 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCT---TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHHcCCEEEEEeccCC---CCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCC---eEEecCCC
Confidence 89999999999999987666654 3346678888898889999999998889999999999999832 38877765
Q ss_pred ccccccCCccccccccceeEEEeecc-CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhh
Q 047109 233 MNFLHSMDSSVVESSMQGVLGFKRYV-PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTE 311 (808)
Q Consensus 233 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~ 311 (808)
... ... ...... .+|++...++. ...+..++|.++|++.++.. ++.+++.+|||++++++|++++++.
T Consensus 229 ~~~-~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~yda~~~~~~al~~~g~~ 297 (346)
T 1usg_A 229 GNA-SLS-NIAGDA-AEGMLVTMPKRYDQDPANQGIVDALKADKKDP--------SGPYVWITYAAVQSLATALERTGSD 297 (346)
T ss_dssp CCT-THH-HHHGGG-GTTCEEEECCCGGGSGGGHHHHHHHHHTTCCC--------CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcH-HHH-HHhhHh-hCCeEEecCCCCCCCHHHHHHHHHHHHHhCCC--------CchhHHHHHHHHHHHHHHHHHhCCC
Confidence 431 110 011123 56777665442 34577899999998877532 4668999999999999999999876
Q ss_pred cCChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEee-cCcEEEE
Q 047109 312 ISNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVI-GKTVKIV 360 (808)
Q Consensus 312 ~~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~-~~~~~~v 360 (808)
++..+.++|++.+|+|++|++.| ++|++... .|.+++++ ++.++.+
T Consensus 298 --~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~-~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 298 --EPLALVKDLKANGANTVIGPLNWDEKGDLKGF-DFGVFQWHADGSSTKA 345 (346)
T ss_dssp --CHHHHHHHHHHHCEEETTEEECBCTTSSBSSC-CCEEEEECTTSCEEEC
T ss_pred --CHHHHHHHHHhCCCccceeeeEECCCCCccCC-ceEEEEEecCCEEEec
Confidence 89999999999999999999999 99998865 89999998 6667654
No 31
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=6.3e-35 Score=315.60 Aligned_cols=340 Identities=15% Similarity=0.185 Sum_probs=287.3
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++|. ++.+++|++++.|+++++..+.+.+++|+.+++|.+||||. ++
T Consensus 6 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~-~s 82 (368)
T 4eyg_A 6 TFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFG-IT 82 (368)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS-SH
T ss_pred cEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCC-cc
Confidence 58999999999875 88899999999999974 36669999999999999999999999999867999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 154 (808)
..+.++..++...+||+|+++++++. +++ ++||+.|++. .++.++++++.++||+++++|++++.+|. ...+
T Consensus 83 ~~~~~~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~g~-~~~~ 157 (368)
T 4eyg_A 83 PAALAAAPLATQAKVPEIVMAAGTSI-ITERSPYIVRTSFTLA---QSSIIIGDWAAKNGIKKVATLTSDYAPGN-DALA 157 (368)
T ss_dssp HHHHHHHHHHHHHTCCEEESSCCCGG-GGGGCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHH
T ss_pred HHHHHHHHHHHhCCceEEeccCCChh-hccCCCCEEEecCChH---HHHHHHHHHHHHcCCCEEEEEecCchHhH-HHHH
Confidence 99999999999999999999988887 775 8999999999 99999999999999999999999999998 8899
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMN 234 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 234 (808)
.+++.+++.|++++....++. +..++...++++++.++++|++.+.+..+..+++++++.|+..++..|+.++.+..
T Consensus 158 ~~~~~l~~~g~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 158 FFKERFTAGGGEIVEEIKVPL---ANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHHTTCEEEEEEEECS---SSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHHcCCEEEEEEeCCC---CCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999998877765 45678889999999999999998888899999999999998655577887774332
Q ss_pred ccccCCccccccccceeEEEeecc--CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhhc
Q 047109 235 FLHSMDSSVVESSMQGVLGFKRYV--PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTEI 312 (808)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~ 312 (808)
.... . ..... .+|++...++. .+.|..++|.++| +.|+... ++.+++.+|||++++++|+++++...
T Consensus 235 ~~~~-~-~~g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~-------p~~~~~~~yda~~~~~~al~~~g~~~ 303 (368)
T 4eyg_A 235 DDLL-N-SMGDA-ALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQR-------PGFMAVGGYDGIHLVFEALKKTGGKA 303 (368)
T ss_dssp HHHH-T-TCCGG-GTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSSC-------CCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHH-H-hhhhh-hCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCCC-------CChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1111 0 11123 56777665554 3468999999999 8884432 56789999999999999999998322
Q ss_pred CChHHHHHHHHcCccccceeEEEe--eCCcccCCccEEEEEee--cCcEEE--EEEEeC
Q 047109 313 SNETCYYKQILNSRFTGLSGDFQL--INGKLTSSRAFEIVNVI--GKTVKI--VGFWTP 365 (808)
Q Consensus 313 ~~~~~l~~~l~~~~~~g~tG~v~f--~~g~~~~~~~~~i~~~~--~~~~~~--vg~~~~ 365 (808)
++..+.++|++++|+|++|++.| ++|+... .+.|++++ ++.|+. ++.|.+
T Consensus 304 -~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 304 -DGDSLIAAMKGMKWESPRGPISIDPETRDIVQ--NIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp -SHHHHHHHHTTCEEEETTEEEEECTTTCCEEE--EEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -CHHHHHHHHHcCCcccCCCCeEECcccCCccc--ceEEEEEEecCCeEEEEEeecccc
Confidence 89999999999999999999999 5777777 88999998 555654 456554
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=3.8e-35 Score=316.58 Aligned_cols=335 Identities=10% Similarity=0.080 Sum_probs=283.9
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++|++||++++++++++.|+++++..+.+.+++|+++++|.+||||. ++
T Consensus 5 ~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 83 (364)
T 3lop_A 5 DISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV-GT 83 (364)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC-CH
T ss_pred eEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC-CC
Confidence 69999999999865 788999999999999999999999999999999999999999999999977999999999 99
Q ss_pred hHHHHHHH--hcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcH
Q 047109 78 TGAHILAE--IGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNII 153 (808)
Q Consensus 78 ~~~~~~~~--~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~ 153 (808)
..+.++.+ ++...+||+|++.++.+. +++ ++||+.|++. .++.++++++..+||+++++|+++++||. ...
T Consensus 84 ~~~~~~~~~~~~~~~~iP~v~~~~~~~~-~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~iaii~~~~~~g~-~~~ 158 (364)
T 3lop_A 84 ANVEALMREGVLAEARLPLVGPATGASS-MTTDPLVFPIKASYQ---QEIDKMITALVTIGVTRIGVLYQEDALGK-EAI 158 (364)
T ss_dssp HHHHHHHHTTHHHHHTCCEESCSCCCGG-GGSCTTEECCSCCHH---HHHHHHHHHHHHTTCCCEEEEEETTHHHH-HHH
T ss_pred HHHHhhCchhhHHhcCCcEEEcccCcHh-hccCCcEEEeCCChH---HHHHHHHHHHHHcCCceEEEEEeCchhhH-HHH
Confidence 99999999 999999999999998888 874 9999999999 99999999999999999999999999999 899
Q ss_pred HHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccc
Q 047109 154 PYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTM 233 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 233 (808)
+.+++.+++.|++++..+.++. +..++...++++++.++++|++++....+..+++++++.|+.. .|+..+.+.
T Consensus 159 ~~~~~~~~~~G~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~i~~~~~~ 232 (364)
T 3lop_A 159 TGVERTLKAHALAITAMASYPR---NTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEA---QLLGLSSID 232 (364)
T ss_dssp HHHHHHHHTTTCCCSEEEEECT---TSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCC---EEEECTTSC
T ss_pred HHHHHHHHHcCCcEEEEEEecC---CCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCC---eEEEeccCC
Confidence 9999999999999887777765 4568889999999999999999999999999999999999832 366666544
Q ss_pred cccccCCccccccccceeEEEee----ccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHh
Q 047109 234 NFLHSMDSSVVESSMQGVLGFKR----YVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLK 309 (808)
Q Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~ 309 (808)
.. .......... .+|++.... .....+..++|.+.|++.++... .++.+++.+||+++++++|+++++
T Consensus 233 ~~-~~~~~~g~~~-~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 233 PG-ILQKVAGLDA-VRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDV------DLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp HH-HHHHHHCHHH-HTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTC------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hH-HHHHHhChhh-cCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCC------CCChHHHHHHHHHHHHHHHHHHhC
Confidence 21 1111111023 566665542 23567899999999999886521 256789999999999999999997
Q ss_pred -hhcCChHHHHHHHHcC-cccc-ceeEEEe-eCCcccCCccEEEEEeecCcEE
Q 047109 310 -TEISNETCYYKQILNS-RFTG-LSGDFQL-INGKLTSSRAFEIVNVIGKTVK 358 (808)
Q Consensus 310 -~~~~~~~~l~~~l~~~-~~~g-~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~ 358 (808)
+. ++..+.++|+++ .|+| .+|++.| +++..... ...+.+++++++.
T Consensus 305 ~~~--~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~-~~~i~~~~~~~~~ 354 (364)
T 3lop_A 305 PKP--TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSH-YIELGVVGPNGLV 354 (364)
T ss_dssp SSC--CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCC-CCEEEEECTTSCE
T ss_pred CCC--CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcc-eEEEEEEcCCCcc
Confidence 44 899999999999 6999 9999999 66655543 7888888877643
No 33
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=3.4e-32 Score=295.74 Aligned_cols=343 Identities=9% Similarity=0.043 Sum_probs=278.7
Q ss_pred CeEEEEEEecCCc---chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSW---AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+++||+++|.+|+ .|.....|+++|++++|+++|++++++++++.|+++++..+.+.+++|+++++|.+|||+. ++
T Consensus 7 ~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 85 (385)
T 1pea_A 7 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY-MS 85 (385)
T ss_dssp -CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC-SH
T ss_pred CeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC-ch
Confidence 4799999999886 3778899999999999999999999999999999999999999999999756999999999 88
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLF 157 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 157 (808)
..+.++..++...++|+|++.+.....-..++||+.+++. .+++.+++++...+|+++++|+.++.++. ...+.++
T Consensus 86 ~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~~~~~~ 161 (385)
T 1pea_A 86 HTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPN---QNSAPLAAYLIRHYGERVVFIGSDYIYPR-ESNHVMR 161 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEECSCCCCCCCCTTEEECSCCGG---GTHHHHHHHHHTTTCSEEEEEEESSHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEECCcccCccCCCCEEEecCChH---HhHHHHHHHHHHccCcEEEEEeCCChHHH-HHHHHHH
Confidence 8888888999889999999876432101128899999999 99999999999999999999999888888 8889999
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccccc
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNFLH 237 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 237 (808)
+.+++.|++++....++. ..+..++...++++++.++++|++.++...+..+++++++.|+..+...++. ..+... .
T Consensus 162 ~~l~~~G~~v~~~~~~~~-~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~-~~~~~~-~ 238 (385)
T 1pea_A 162 HLYRQHGGTVLEEIYIPL-YPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIAS-LTTSEA-E 238 (385)
T ss_dssp HHHHHTTCEEEEEEEECS-SCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEE-SSCCHH-H
T ss_pred HHHHHcCCEEEEEEeecC-CCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEe-cccchH-H
Confidence 999999999887655543 2356789999999988899999998888899999999999998543344444 333321 1
Q ss_pred cCCccccccccceeEEEeecc--CCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhhcCCh
Q 047109 238 SMDSSVVESSMQGVLGFKRYV--PASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTEISNE 315 (808)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~ 315 (808)
... ..... .+|+++..++. ...+..++|.++|++.|+... .++.+++.+|||++++++|++++++. ++
T Consensus 239 ~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~------~~~~~~~~~yda~~~~~~Al~~ag~~--~~ 308 (385)
T 1pea_A 239 VAK-MESDV-AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA------TITAWAEAAYWQTLLLGRAAQAAGNW--RV 308 (385)
T ss_dssp HTT-SCHHH-HTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC------CCCHHHHHHHHHHHHHHHHHHHHTSC--CH
T ss_pred HHh-cCchh-hCCeEEecccccccCCHHHHHHHHHHHHHhCCCC------CCChHHHHHHHHHHHHHHHHHHhCCC--CH
Confidence 111 11123 56777665443 356889999999998776431 24668999999999999999999987 89
Q ss_pred HHHHHHHHcCccccceeEEEe-e-CCcccCCccEEEEEe-ecCcEEEEEEE
Q 047109 316 TCYYKQILNSRFTGLSGDFQL-I-NGKLTSSRAFEIVNV-IGKTVKIVGFW 363 (808)
Q Consensus 316 ~~l~~~l~~~~~~g~tG~v~f-~-~g~~~~~~~~~i~~~-~~~~~~~vg~~ 363 (808)
..+.++|++++|+|++|++.| + +++... .+.|+++ +++.|+.|...
T Consensus 309 ~~l~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 309 EDVQRHLYDIDIDAPQGPVRVERQNNHSRL--SSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHHHHHHTTCCEEETTEEEEECTTTSCEEB--CCEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHhhCcccCCCCCeEEcCCCCcccc--ceEEEEEcCCCcEEEeecC
Confidence 999999999999999999999 6 455555 7899999 56668887654
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.98 E-value=2.2e-31 Score=287.15 Aligned_cols=329 Identities=15% Similarity=0.138 Sum_probs=270.3
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++| ++++++++.|+++++..+.+.+++|+++++|.+|||+. ++
T Consensus 7 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 79 (362)
T 3snr_A 7 EITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSS-VT 79 (362)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS-SH
T ss_pred CeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCC-Cc
Confidence 69999999999975 7788999999999984 47999999999999999999999999988999999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 154 (808)
..+.++..++...+||+|++.++ +. ... ++||+.|++. .++.++++++.++||+++++|++++.+|. ...+
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~-~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~~~ 153 (362)
T 3snr_A 80 PPSVAISNVANEAQIPHIALAPL-PI-TPERAKWSVVMPQPIP---IMGKVLYEHMKKNNVKTVGYIGYSDSYGD-LWFN 153 (362)
T ss_dssp HHHHHHHHHHHHHTCCEEESSCC-CC-CTTTTTTEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHH
T ss_pred HHHHHHHHHHHHcCccEEEecCC-cc-ccCCCCcEEecCCChH---HHHHHHHHHHHhcCCCEEEEEecCchHHH-HHHH
Confidence 99999999999999999999876 43 222 8999999999 99999999999999999999999999999 8999
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMN 234 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 234 (808)
.+++.+++.|++++....++. +..++...++++++.++++|++.+....+..+++++++.|+.. .++...++..
T Consensus 154 ~~~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---p~i~~~g~~~ 227 (362)
T 3snr_A 154 DLKKQGEAMGLKIVGEERFAR---PDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNG---LIYQTHGAAS 227 (362)
T ss_dssp HHHHHHHHTTCEEEEEEEECT---TCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCS---EEEECGGGCS
T ss_pred HHHHHHHHcCCEEEEEeecCC---CCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---cEEeccCcCc
Confidence 999999999999987777765 4457788888998889999999998999999999999999832 3465555432
Q ss_pred ccccCCccccccccceeEEEeec----------cCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHH
Q 047109 235 FLHSMDSSVVESSMQGVLGFKRY----------VPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKA 304 (808)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~A 304 (808)
. ... ...... .+|++....+ .+..+..++|.++|++.++... ++.+++.+||+++++++|
T Consensus 228 ~-~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-------p~~~~~~~yda~~~~~~a 297 (362)
T 3snr_A 228 M-DFI-RIAGKS-AEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPSS-------RSQFAGHSYDAFKVLERV 297 (362)
T ss_dssp H-HHH-HHHGGG-GTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTTC-------CCHHHHHHHHHHHHHHHH
T ss_pred H-HHH-HHhHHH-hCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCCC-------CCchhHhHHHHHHHHHHH
Confidence 1 110 011122 5666654421 1234679999999999887632 467899999999999999
Q ss_pred HHHHhhh-----cCChHHHHHHHHcC-ccccceeEEEe-eC---CcccCCccEEEEEeecCcEEEE
Q 047109 305 SEKLKTE-----ISNETCYYKQILNS-RFTGLSGDFQL-IN---GKLTSSRAFEIVNVIGKTVKIV 360 (808)
Q Consensus 305 l~~~~~~-----~~~~~~l~~~l~~~-~~~g~tG~v~f-~~---g~~~~~~~~~i~~~~~~~~~~v 360 (808)
++++++. ..++..+.++|+++ +|+|++|++.| ++ |.... .+.++++++++|+.|
T Consensus 298 l~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~--~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 298 VPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDR--SRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGG--GCEEEEEETTEEEEC
T ss_pred HHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCC--CeEEEEEECCEEEEc
Confidence 9999643 11478899999999 89999999999 65 33344 789999998777654
No 35
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.98 E-value=1e-31 Score=292.52 Aligned_cols=330 Identities=12% Similarity=0.124 Sum_probs=271.5
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+|+||+++|++|+. |.....|+++|++++| ++++++++.|+++++.++.+.+++|+++++|.+||||. ++
T Consensus 27 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~-~s 99 (386)
T 3sg0_A 27 EIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSS-LT 99 (386)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCS-SH
T ss_pred ceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCC-Cc
Confidence 68999999999975 7788999999999884 47999999999999999999999999987899999999 99
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccc--c----ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccC
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLT--S----YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDN 151 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls--~----~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~ 151 (808)
..+.++..++...+||+|++.++++. ++ . ++||+.|++. .++.++++++..+||+++++|++++.+|. .
T Consensus 100 ~~~~~~~~~~~~~~ip~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~ 174 (386)
T 3sg0_A 100 PVSLPLIDIAAEAKTPLMTMAAAAIL-VAPMDERRKWVYKVVPNDD---IMAEAIGKYIAKTGAKKVGYIGFSDAYGE-G 174 (386)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCCGGG-TCSCCTTGGGEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-H
T ss_pred hhHHHHHHHHHhcCCeEEEecCCCcc-ccccCCCCCcEEecCCCcH---HHHHHHHHHHHhcCCCEEEEEecCchHHH-H
Confidence 99999999999999999999987776 65 1 8999999999 99999999999999999999999999999 9
Q ss_pred cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 152 IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
..+.+++.+++.|++++..+.++. +..++...++++++.++++|++.++...+..+++++++.|+. ..++..+.
T Consensus 175 ~~~~~~~~l~~~g~~v~~~~~~~~---~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~ 248 (386)
T 3sg0_A 175 YYKVLAAAAPKLGFELTTHEVYAR---SDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFK---GAIYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHHTCEECCCEEECT---TCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCC---SEEECCGG
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCC---CCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---CcEEeccc
Confidence 999999999999999887666665 445788889999999999999999989999999999999984 23555554
Q ss_pred cccccccCCccccccccceeEEEeec-------cCC---cHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHH
Q 047109 232 TMNFLHSMDSSVVESSMQGVLGFKRY-------VPA---SKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWAL 301 (808)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~ 301 (808)
+... +... ..... .+|++....+ ... .+..++|.++|++.|+... ++.+++.+||+++++
T Consensus 249 ~~~~-~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-------p~~~~~~~yda~~~~ 318 (386)
T 3sg0_A 249 VATE-EFIK-LGGKD-VEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGAA-------PTIFGVHLWDSMTLV 318 (386)
T ss_dssp GCSH-HHHH-HHGGG-GTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTCC-------CCHHHHHHHHHHHHH
T ss_pred cCCH-HHHH-hhhhh-cCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCCC-------CChhHHHHHHHHHHH
Confidence 4321 1111 11122 5666654421 112 2468999999999887642 467899999999999
Q ss_pred HHHHHHHhhh-----cCChHHHHHHHHcC-ccccceeEEEe-eCCc---ccCCccEEEEEeecCcEEEE
Q 047109 302 AKASEKLKTE-----ISNETCYYKQILNS-RFTGLSGDFQL-INGK---LTSSRAFEIVNVIGKTVKIV 360 (808)
Q Consensus 302 a~Al~~~~~~-----~~~~~~l~~~l~~~-~~~g~tG~v~f-~~g~---~~~~~~~~i~~~~~~~~~~v 360 (808)
++|++++.+. ..++..+.++|+++ +|+|++|++.| +++. ... .+.++++++++|+.+
T Consensus 319 ~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~--~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 319 ENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDER--SAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGG--GCEEEEEETTEEEEC
T ss_pred HHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCC--ceEEEEEECCEEEec
Confidence 9999999532 11468899999999 89999999999 5432 333 689999998877654
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=4.5e-27 Score=245.39 Aligned_cols=306 Identities=12% Similarity=0.071 Sum_probs=239.3
Q ss_pred EEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 3 HVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 3 ~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
|||+++|+||+. |...+.|+++|. .+.+++++++|++++| +.+++.+++++ +|.+||||. +|+.
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~--a~~~~~~l~~~-~v~~IiGp~-~s~~ 68 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNS--VQDIIAQAKQA-GIKTLVGPL-LKQN 68 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSC--HHHHHHHHHHT-TCCEEECCC-SHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCCh--HHHHHHHHHHC-CCCEEEeeC-CHHH
Confidence 799999999987 999999999996 2468999999999998 67777888754 999999999 9999
Q ss_pred HHHHHHhc-CCCCccEEeccCCCCccccc---ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHH
Q 047109 80 AHILAEIG-SKAKIPVISLYATLPSSLTS---YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPY 155 (808)
Q Consensus 80 ~~~~~~~~-~~~~iP~is~~~~~~~~ls~---~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 155 (808)
+.++..++ ...+||+|++.+++.. ... ++||+.|. ++++++++++...|.+++++|+++++||. ...+.
T Consensus 69 ~~a~~~~~~~~~~vp~i~~~~~~~~-~~~~~~~~f~~~~~-----~~~~~~a~~a~~~g~k~vail~~~~~yG~-~~~~~ 141 (325)
T 2h4a_A 69 LDVILADPAQIQGMDVLALNATPNS-RAIPQLCYYGLSPE-----DEAESAANKMWNDGVRNPLVAMPQNDLGQ-RVGNA 141 (325)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCSSC-CCCTTEEECCCCHH-----HHHHHHHHHHHHTTCCSCEEEEESSHHHH-HHHHH
T ss_pred HHHHHhhhhccCCCcEEECCCCccc-cCCCCeEEEECCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcHHH-HHHHH
Confidence 99999998 7789999998876443 222 67776655 45899999998889999999999999999 99999
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNF 235 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 235 (808)
|++.+++.|++|+..+.+.. + .|+..+|+++ ..++|+|++.+...++..+.++++..|. +...+.++.+...
T Consensus 142 F~~~~~~~Gg~vv~~~~y~~---~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~ 213 (325)
T 2h4a_A 142 FNVRWQQLAGTDANIRYYNL---P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP---NLAIYASSRASAS 213 (325)
T ss_dssp HHHHHHHHHSSCCEEEEESS---T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCH
T ss_pred HHHHHHHcCCCcceeEecCC---H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC---CCCEEEecccccc
Confidence 99999999999998888765 4 5999999998 4889999999999999888888887753 4456666666511
Q ss_pred cccCCccccccccceeEEEe-ec--cCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhhc
Q 047109 236 LHSMDSSVVESSMQGVLGFK-RY--VPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTEI 312 (808)
Q Consensus 236 ~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~ 312 (808)
........... ++|+.... ++ .++.+.+++|.+.|+..+. +....+++|||+.++++. .++.
T Consensus 214 s~~~~~~~~~~-~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~~----------~~rl~AlgyDA~~l~~~l-~~l~--- 278 (325)
T 2h4a_A 214 ATNTNTDFIAQ-MNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQF-NELR--- 278 (325)
T ss_dssp HHHTCHHHHHH-TTTCEEEECGGGSCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTH-HHHH---
T ss_pred CCCCCchhhhh-cCCcEEEccccccCCCcHHHHHHHhccCCCcc----------hHHHHHHHHHHHHHHHHH-HHHh---
Confidence 01111122233 67776554 22 3455778888876643221 345679999999976553 3321
Q ss_pred CChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEE
Q 047109 313 SNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVG 361 (808)
Q Consensus 313 ~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg 361 (808)
.+.+..|+|+||.++| ++|+... ...+.+++++++++|-
T Consensus 279 --------~~~~~~~~G~tG~l~~~~~g~~~R--~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 279 --------QVPGYRLSGLTGILSADTNCNVER--DMTWYQYQDGAIVPVV 318 (325)
T ss_dssp --------HSTTCCEEETTEEEEECTTCBEEE--ECEEEEEETTEEEECC
T ss_pred --------hCCCCeeccCceeEEECCCCeEEE--eechhhccCCeEEEee
Confidence 1334679999999999 9999988 8999999988887763
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=3.3e-27 Score=249.68 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=239.1
Q ss_pred CeEEEEEEecCCcc---hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMRSWA---GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
.+|||+++|+||+. |...+.|+++|++ +++++++++|++++|.++ +.+++.+++|.+||||. +|
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~---------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~-~s 68 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPL-LK 68 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT---------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCC-SH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC---------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEcc-cc
Confidence 37999999999987 8899999999963 357889999999999765 34556666999999999 98
Q ss_pred hHHHHHHH-hcCCCCccEEeccCCCCccccc-ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHH
Q 047109 78 TGAHILAE-IGSKAKIPVISLYATLPSSLTS-YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPY 155 (808)
Q Consensus 78 ~~~~~~~~-~~~~~~iP~is~~~~~~~~ls~-~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 155 (808)
+.+.++.. +.....+|+++.+++++. ... ++||+.+++. .++.++++++...+++++++++++++||. ...+.
T Consensus 69 ~~~~a~~~~~~~~~~v~~~~~~~~~~~-~~~~~~f~~~~~~~---~~~~~~a~~~~~~g~k~~~ii~~~~~yg~-~~~~~ 143 (327)
T 3ckm_A 69 QNLDVILADPAQIQGMDVLALNATPNS-RAIPQLCYYGLSPE---DEAESAANKMWNDGVRNPLVAMPQNDLGQ-RVGNA 143 (327)
T ss_dssp HHHHHHHHCGGGGTTCEEEESCCCTTC-CCCTTEEECCCCHH---HHHHHHHHHHHHTTCCSCEEEEESSHHHH-HHHHH
T ss_pred ccchhhHHHHHhccCceEeccCcCccc-ccCCCeEEEecChH---HHHHHHHHHHHhcCCeeEEEEecCChHHH-HHHHH
Confidence 88777665 455667777776655554 444 9999999999 99999999998899999999999999999 99999
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTASTMNF 235 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 235 (808)
|++.+++.|++|+..+.++. ++ ....+.+++..++|+|++...+.++..++++++++|+ +..++.++.+...
T Consensus 144 f~~~~~~~Gg~vv~~~~~~~---~~--~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~---~~~~~~~~~~~~~ 215 (327)
T 3ckm_A 144 FNVRWQQLAGTDANIRYYNL---PA--DVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVP---NLAIYASSRASAS 215 (327)
T ss_dssp HHHHHHHHHSSCCEEEEESS---TT--HHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCH
T ss_pred HHHHHHHCCCeEEEEEECCC---Cc--hhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhc---cCCEEeeeccccc
Confidence 99999999999998888765 32 2345677888999999999999999999999999986 4556666655432
Q ss_pred cccCCccccccccceeEEEee---ccCCcHHHHHHHHHHHHHhhccCCCCCCCCcchhhhhHhhHHHHHHHHHHHHhhhc
Q 047109 236 LHSMDSSVVESSMQGVLGFKR---YVPASKQLRNFTLKWKREMYLNNQNAEVSELDVHGILAYDTVWALAKASEKLKTEI 312 (808)
Q Consensus 236 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~ 312 (808)
........... ..|+..... ..++.+.+++|.++|++.++. .++.+++|||+.+++.+.+..
T Consensus 216 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~AlgyDA~~l~~~l~~~~---- 280 (327)
T 3ckm_A 216 ATNTNTDFIAQ-MNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL----------MRLYAMGADAWLLINQFNELR---- 280 (327)
T ss_dssp HHHTCHHHHHH-TTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH----------HHHHHHHHHHHHHHHTHHHHH----
T ss_pred cchhcchhhhh-cCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC----------CchHHHHHHHHHHHHHHHHhc----
Confidence 21111111222 445444332 244567888888887665542 336788999998765543322
Q ss_pred CChHHHHHHHHcCccccceeEEEe-eCCcccCCccEEEEEeecCcEEEEEEEe
Q 047109 313 SNETCYYKQILNSRFTGLSGDFQL-INGKLTSSRAFEIVNVIGKTVKIVGFWT 364 (808)
Q Consensus 313 ~~~~~l~~~l~~~~~~g~tG~v~f-~~g~~~~~~~~~i~~~~~~~~~~vg~~~ 364 (808)
.+....|+|+||.++| ++|+... .+.+++++++.+++|...+
T Consensus 281 --------~~~~~~f~G~tG~i~fd~~G~~~r--~l~~~~~~~G~~vpv~d~~ 323 (327)
T 3ckm_A 281 --------QVPGYRLSGLTGILSADTNCNVER--DMTWYQYQDGAIVPVVDHH 323 (327)
T ss_dssp --------HSTTCCEEETTEEEEECTTCBEEE--ECEEEEEETTEEEECC---
T ss_pred --------CCCCCCceeceEEEEECCCCCCcc--ccEEEEEECCEEEEccccc
Confidence 2344579999999999 9999887 8999999998899886543
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.91 E-value=4.7e-24 Score=224.11 Aligned_cols=261 Identities=19% Similarity=0.259 Sum_probs=191.6
Q ss_pred CCCeEEEEeecCCccceEEEeeC---CCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCC---CCCHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRD---PQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRM---PGSYNDLI 485 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~---~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~ 485 (808)
.+++|+|++. .++||.+.+.. ..++ +++.|+++||++++++++|++++++..+.+ .+|.. +.+|++++
T Consensus 11 ~~~~l~V~~~--~~~P~~~~~~~~~~~~~~---g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 84 (312)
T 1yae_A 11 SNRSLIVTTI--LEEPYVLFKKSDKPLYGN---DRFEGYCIDLLRELSTILGFTYEIRLVEDG-KYGAQDDVNGQWNGMV 84 (312)
T ss_dssp CSCEEEEEEC--CBTTTBEECCCSSCCCGG---GGEESHHHHHHHHHHHHHCCEEEEEECSSC-CCCCBCTTTCCBCSHH
T ss_pred cCceEEEEEe--ccCCeeEEeccccccCCC---ceEEEEEHHHHHHHHHHcCCeEEEEecCCC-ccceeccCCCcchHHH
Confidence 6789999998 45899986421 0023 789999999999999999998777765543 34432 57999999
Q ss_pred HHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCC-CC-ccceeeccCchhHHHHHHHHHHHHHhhheeee
Q 047109 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDR-NN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIE 563 (808)
Q Consensus 486 ~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~-~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~ 563 (808)
.+|.+|++|++++++++|++|.+.++||.||+..+.+++++++. .. +++.|+.||+..-+ .+.
T Consensus 85 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~---------------tv~ 149 (312)
T 1yae_A 85 RELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR---------------GSE 149 (312)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC--------------------------------------
T ss_pred HHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc---------------ccc
Confidence 99999999999988999999999999999999999999999884 33 89999999981110 000
Q ss_pred cccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCC---c
Q 047109 564 RPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRD---N 640 (808)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~---~ 640 (808)
+. . ..+-+++++ .++ +
T Consensus 150 ~~-------------------------------------------------------~---~~i~~~~dL---~g~~~~~ 168 (312)
T 1yae_A 150 RM-------------------------------------------------------E---SPIDSADDL---AKQTKIE 168 (312)
T ss_dssp ---------------------------------------------------------------CCSHHHH---HTCSSSE
T ss_pred cc-------------------------------------------------------c---CCCCCHHHH---hhccCce
Confidence 00 0 001134444 555 7
Q ss_pred eeeecCCcHHHhhhccCCC-----------cccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEe
Q 047109 641 IGSQLGSFVPGALSNLNFK-----------DSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMI 709 (808)
Q Consensus 641 i~~~~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 709 (808)
+|++.+++...++.+...+ ..++..+++.++++++|.+| + |+++.+...+.+++++.| ++.++
T Consensus 169 vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G----~-Da~i~~~~~~~~~~~~~~-~l~~~ 242 (312)
T 1yae_A 169 YGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS----D-YAFLMESTTIEFVTQRNC-NLTQI 242 (312)
T ss_dssp EECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHS----S-EEEEEEHHHHHHHHTTCT-TEEEE
T ss_pred EEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcC----C-cEEEeccHHHHHHHhcCC-CEEEe
Confidence 8988777767777543321 12456788999999999655 4 899999999999888877 79999
Q ss_pred ccccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCcc
Q 047109 710 APNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSFM 762 (808)
Q Consensus 710 ~~~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~~ 762 (808)
+..+. ..+++++++|++|+++.||++|.+|+++|.++++.+||+.. ..|..
T Consensus 243 ~~~~~-~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~ 293 (312)
T 1yae_A 243 GGLID-SKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPE 293 (312)
T ss_dssp SSCSS-CEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC--
T ss_pred ccccc-ccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCC
Confidence 88888 89999999999999999999999999999999999999988 68886
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.90 E-value=8.4e-24 Score=219.54 Aligned_cols=236 Identities=18% Similarity=0.283 Sum_probs=185.9
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC---CC----CCHHHHH
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR---MP----GSYNDLI 485 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~---~~----~~~~~~~ 485 (808)
.++++|++.. .|+||.+.+.+ +++.|+++||++++++++|++++++.++.+ .+|. .| ++|++++
T Consensus 40 ~~~l~vg~~~-~~~P~~~~~~~-------g~~~G~~vDll~~ia~~lg~~~~~~~~~d~-~~g~~~~~~~~~~~~w~~~~ 110 (292)
T 1pb7_A 40 KKVICTGPND-TSPGSPRHTVP-------QCCYGFCIDLLIKLARTMNFTYEVHLVADG-KFGTQERVNNSNKKEWNGMM 110 (292)
T ss_dssp CCEEEEEEC---------CEEE-------EEEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCEEECTTSSCEEECHHH
T ss_pred cceeecccCC-CCCCccccccc-------cCcceeHHHHHHHHHHHcCceEEEEEecCC-cccccccccccccCcHHHHH
Confidence 4788998876 68888775432 789999999999999999998777766543 3443 22 5899999
Q ss_pred HHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecc
Q 047109 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERP 565 (808)
Q Consensus 486 ~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~ 565 (808)
++|.+|++|++++++++|++|.+.++||.||+..+.+++++++...+
T Consensus 111 ~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i~--------------------------------- 157 (292)
T 1pb7_A 111 GELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRIT--------------------------------- 157 (292)
T ss_dssp HHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCC---------------------------------
T ss_pred HHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCCC---------------------------------
Confidence 99999999999999999999999999999999999999999774321
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccC---Cc-e
Q 047109 566 INDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASR---DN-I 641 (808)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~---~~-i 641 (808)
+++++.. .+ .. +
T Consensus 158 ---------------------------------------------------------------~~~dl~~-~g~~~~~~~ 173 (292)
T 1pb7_A 158 ---------------------------------------------------------------GINDPRL-RNPSDKFIY 173 (292)
T ss_dssp ---------------------------------------------------------------STTCHHH-HSCBTTBCE
T ss_pred ---------------------------------------------------------------CCcCccc-cCcccceEE
Confidence 1222210 12 23 4
Q ss_pred eeecCCcHHHhhhccC-----CCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccc
Q 047109 642 GSQLGSFVPGALSNLN-----FKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTT 716 (808)
Q Consensus 642 ~~~~~s~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 716 (808)
++..++....++++.. .+..++..+.+.++++++|.+|+ +|+++.+...+.++.++.| ++.+++..+. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~-~l~~~~~~~~-~ 247 (292)
T 1pb7_A 174 ATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKC-DLVTTGELFF-R 247 (292)
T ss_dssp ECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCT-TEEECSSCSE-E
T ss_pred EEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCC-CEEEcCcccc-C
Confidence 7777887777765321 11235677889999999999988 9999999999999998888 7999988888 8
Q ss_pred cceEEEEeCCCCChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCc
Q 047109 717 SGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSF 761 (808)
Q Consensus 717 ~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~ 761 (808)
.+++++++|++||++.||++|.+++++|.++++.+||+.. .+|.
T Consensus 248 ~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~-~~c~ 291 (292)
T 1pb7_A 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY-QECD 291 (292)
T ss_dssp EEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSS-SCCC
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCC-CCCC
Confidence 9999999999999999999999999999999999999986 6775
No 40
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.90 E-value=2.6e-23 Score=212.39 Aligned_cols=237 Identities=19% Similarity=0.287 Sum_probs=192.0
Q ss_pred CCCeEEEEeecCCccceEEEeeCC---CCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC---CCCCHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDP---QSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR---MPGSYNDLI 485 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~---~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~ 485 (808)
++++|+|++. .++||.+.+.+. .++ +++.|+++||++++++++|++++++.++.+. +|. .+.+|++++
T Consensus 2 ~~~~l~v~~~--~~~P~~~~~~~~~~~~~~---g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~-~g~~~~~~~~~~~~~ 75 (259)
T 3g3k_A 2 SNRSLIVTTI--LEEPYVLFKKSDKPLYGN---DRFEGYCIDLLRELSTHLGFTYEIRLVEDGK-YGAQDDVNGQWNGMV 75 (259)
T ss_dssp -CCCEEEEEC--CBTTTBEECCCSSCCCGG---GGEESHHHHHHHHHHHHHTCCEEEEECTTCC-CCCBCTTTCCBCHHH
T ss_pred CCcEEEEEEe--cCCCeEEEeecccccCCC---ceeeeEHHHHHHHHHHHcCCeEEEEECCCCC-cCcccCCCCcchHHH
Confidence 3578999998 568999865431 124 7899999999999999999988887776432 222 256899999
Q ss_pred HHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecc
Q 047109 486 DQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERP 565 (808)
Q Consensus 486 ~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~ 565 (808)
.+|.+|++|++++++++|++|.+.++||.||+....+++++++.+..
T Consensus 76 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~--------------------------------- 122 (259)
T 3g3k_A 76 RELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPID--------------------------------- 122 (259)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCC---------------------------------
T ss_pred HHHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcccc---------------------------------
Confidence 99999999999988999999999999999999999999998875321
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCc---ee
Q 047109 566 INDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDN---IG 642 (808)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~---i~ 642 (808)
+++++ .+++ +|
T Consensus 123 ---------------------------------------------------------------~~~dL---~g~~~~~ig 136 (259)
T 3g3k_A 123 ---------------------------------------------------------------SADDL---AKQTKIEYG 136 (259)
T ss_dssp ---------------------------------------------------------------SHHHH---HTCSSSEEE
T ss_pred ---------------------------------------------------------------CHHHh---ccCCCceEE
Confidence 34454 4444 88
Q ss_pred eecCCcHHHhhhccCCCc-----------ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecc
Q 047109 643 SQLGSFVPGALSNLNFKD-----------SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAP 711 (808)
Q Consensus 643 ~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 711 (808)
+..++....++.+..... ..+..+++.++++++|.+|+ ++++.+...+.++.++.| ++.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~~~-~l~~~~~ 210 (259)
T 3g3k_A 137 AVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNC-NLTQIGG 210 (259)
T ss_dssp EETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHHCT-TEEEESS
T ss_pred EecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcCCc-eEEEecc
Confidence 888888777776543321 13456789999999997764 899999999999888877 7999988
Q ss_pred ccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCc
Q 047109 712 NYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSF 761 (808)
Q Consensus 712 ~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~ 761 (808)
.+. ..+++++++|++||.+.||++|.+|+++|.++++.+||+.. ..|+
T Consensus 211 ~~~-~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~ 258 (259)
T 3g3k_A 211 LID-SKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRG-NGCP 258 (259)
T ss_dssp CSS-CEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC---CC
T ss_pred cce-eeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCC-CCCC
Confidence 888 99999999999999999999999999999999999999996 6676
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=1.1e-23 Score=219.00 Aligned_cols=214 Identities=17% Similarity=0.314 Sum_probs=175.3
Q ss_pred eEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC-CCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccE
Q 047109 443 IVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR-MPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGI 521 (808)
Q Consensus 443 ~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~ 521 (808)
++.|+++||++++++++|++++++.++.+ .+|. .+++|++++++|.+|++|++++++++|++|.+.++||.||+..+.
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~-~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~ 145 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDG-KYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSL 145 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTC-CCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCC-cccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcce
Confidence 37899999999999999997777655432 3443 567899999999999999999899999999999999999999999
Q ss_pred EEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccc
Q 047109 522 GMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSN 600 (808)
Q Consensus 522 ~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~ 600 (808)
+++++++... .
T Consensus 146 ~i~~~~~~~~i~-------------------------------------------------------------------- 157 (294)
T 2rc8_A 146 GILVRTRGTELS-------------------------------------------------------------------- 157 (294)
T ss_dssp EEEEETTSCCCC--------------------------------------------------------------------
T ss_pred EEEEECCCCCcC--------------------------------------------------------------------
Confidence 9999987421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhh---hccCCceeeecCCcHHHhhhccCCCc----ccccccCCHHHHH
Q 047109 601 WSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIK---LASRDNIGSQLGSFVPGALSNLNFKD----SRLKKYNSAEEFA 673 (808)
Q Consensus 601 s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~ 673 (808)
+++++. ...++++|+..|+....++++. .+. .+...+.+.++++
T Consensus 158 ----------------------------~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~~~~~~~~~~~~ 208 (294)
T 2rc8_A 158 ----------------------------GIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMRRYNVPATPDGV 208 (294)
T ss_dssp ----------------------------STTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHGGGCBSSHHHHH
T ss_pred ----------------------------ChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHHHhcCCCHHHHH
Confidence 233331 1138899999999998888653 221 1223578899999
Q ss_pred HHHhc--CCCCCceEEEEechhhHHHHHhcC--CCceEEeccccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHH
Q 047109 674 NALSK--GSKNGGISAIIDEIPYIKAFLAKY--STDYTMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKI 749 (808)
Q Consensus 674 ~~l~~--~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~ 749 (808)
++|.+ |+ +|+++.+...+.+++++. | ++.+++..+. ..+++++++|++|+++.||++|.+|+++|.++++
T Consensus 209 ~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~-~l~~~~~~~~-~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l 282 (294)
T 2rc8_A 209 QYLKNDPEK----LDAFIMDKALLDYEVSIDADC-KLLTVGKPFA-IEGYGIGLPPNSPLTSNISELISQYKSHGFMDVL 282 (294)
T ss_dssp HHHHSSSCC----CSEEEEEHHHHHHHHHTCSSS-CEEECSCCEE-EEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhccCc----eeEEEecHHHHHHHHhhCCCC-CEEEcCCccc-ccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 99988 77 999999999999988864 6 7988888888 8899999999999999999999999999999999
Q ss_pred HHHhcCCCCCCc
Q 047109 750 EIEWFNDQQSSF 761 (808)
Q Consensus 750 ~~~~~~~~~~~~ 761 (808)
.+||+.. ..|.
T Consensus 283 ~~kw~~~-~~c~ 293 (294)
T 2rc8_A 283 HDKWYKV-VPCG 293 (294)
T ss_dssp HHHHCCC-----
T ss_pred HHhhcCC-CCCC
Confidence 9999986 6775
No 42
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.89 E-value=2.5e-23 Score=210.07 Aligned_cols=226 Identities=20% Similarity=0.267 Sum_probs=186.1
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
++++|+||+.. .|+||.+.... .++ +++.|+++||++++++++|+++ ++++. +|++++..|.+|
T Consensus 10 ~~g~L~Vg~~~-~~pP~~~~~~~-d~~---g~~~G~~vdl~~~ia~~lg~~~--~~~~~---------~~~~~~~~l~~g 73 (243)
T 4h5g_A 10 QKGKLVVATSP-DYAPFEFQSLV-DGK---NQVVGADIDMAQAIADELGVKL--EILSM---------SFDNVLTSLQTG 73 (243)
T ss_dssp HHTEEEEEECC-CBTTTBEEEEE-TTE---EEEESHHHHHHHHHHHHHTSEE--EEEEC---------CGGGHHHHHHTT
T ss_pred hCCEEEEEECC-CCCCcEeeecc-CCC---CcEEEeHHHHHHHHHHHhCCce--EEecc---------cHHHHHHHHHcC
Confidence 45799999976 79999885321 133 7899999999999999999855 44554 789999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|++++++++|++|.+.++||.||+....++++++.+...+
T Consensus 74 ~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~~-------------------------------------- 115 (243)
T 4h5g_A 74 KADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEKY-------------------------------------- 115 (243)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTTC--------------------------------------
T ss_pred CCCcccccccCChhHccEEEccCccccCcccccccccccccc--------------------------------------
Confidence 999999999999999999999999999999999987643210
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
-+..++ .++++++..|+....
T Consensus 116 --------------------------------------------------------~~~~dl---~g~~i~v~~g~~~~~ 136 (243)
T 4h5g_A 116 --------------------------------------------------------KDLTSL---ESANIAAQKGTVPES 136 (243)
T ss_dssp --------------------------------------------------------CSHHHH---HTSEEEEETTSHHHH
T ss_pred --------------------------------------------------------cccccC---CCCEEEecCCcHHHH
Confidence 023444 899999999999988
Q ss_pred hhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-CceEEe-ccccccccceEEEEeCCCC-
Q 047109 652 ALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-TDYTMI-APNYTTTSGFGFVFQKGSP- 728 (808)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~k~sp- 728 (808)
++.+ ..+..++..+++..+++++|.+|+ +|+++.+...+.++..++. ..+..+ ..... ..+++++++|++|
T Consensus 137 ~l~~-~~~~~~i~~~~~~~~~~~~l~~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~k~~~~ 210 (243)
T 4h5g_A 137 MVKE-QLPKAQLTSLTNMGEAVNELQAGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKD-GDANAVALRKNSDD 210 (243)
T ss_dssp HHHH-HCTTSEEEEESCHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCS-SCCBCCEEESSCHH
T ss_pred HHHH-hcccceeEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHHCCCCceeeccCCccc-CceEEEEEeCCCHH
Confidence 8876 355678889999999999999999 9999999988888777653 122222 23444 6778999999998
Q ss_pred ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 ~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
|++.||++|.+|+++|.++++.+||+..
T Consensus 211 L~~~~n~aL~~l~~dG~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 211 LKEVVDKVIQKLKDEGTYQSYLEKAASL 238 (243)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 9999999999999999999999999875
No 43
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.89 E-value=8.2e-23 Score=206.31 Aligned_cols=222 Identities=14% Similarity=0.193 Sum_probs=179.9
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHc
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSL-TFEVPYEFIPFEDPNGRMPGSYNDLIDQVYF 490 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (808)
+.++|+||+.. .||||.+.+++ +++.|+++||+++++++| |++ +++.+. +|++++..|.+
T Consensus 7 ~~~tl~vg~~~-~~pP~~~~d~~-------G~~~G~~vdl~~~ia~~l~g~~--~~~~~~---------~~~~~~~~l~~ 67 (243)
T 4gvo_A 7 KVQTITVGTGT-QFPNVCFLDEN-------GKLTGYDVELVKEIDKRLPGYK--FKFKTM---------DFSNLLVSLGA 67 (243)
T ss_dssp -CEEEEEEECS-EETTTEEECTT-------SCEESHHHHHHHHHHHTCTTEE--EEEEEC---------CGGGHHHHHHT
T ss_pred cCCeEEEEECC-CCCCeEEECCC-------CcEEEhHHHHHHHHHHhccCCe--EEEEEC---------CHHHHHHHHHC
Confidence 45799999976 79999985422 789999999999999998 764 555554 78999999999
Q ss_pred CcccEEEeceeeeccccceeeccccceeccEEEEE-ecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 047109 491 QKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIV-PTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPIND 568 (808)
Q Consensus 491 g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv-~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 568 (808)
|++|+++++++.|++|.+.++||.|++.....+++ ++.... .
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~------------------------------------ 111 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSIN------------------------------------ 111 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCS------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccccC------------------------------------
Confidence 99999998999999999999999997766555444 433321 1
Q ss_pred CCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCc
Q 047109 569 EFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSF 648 (808)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~ 648 (808)
+++++ .++++++..|+.
T Consensus 112 ------------------------------------------------------------~~~dL---~g~~v~v~~gs~ 128 (243)
T 4gvo_A 112 ------------------------------------------------------------STKDL---AGKRVITSATSN 128 (243)
T ss_dssp ------------------------------------------------------------SGGGG---TTCEEEECTTCH
T ss_pred ------------------------------------------------------------chHHh---cCCeEEEecCch
Confidence 34555 899999999998
Q ss_pred HHHhhhcc----CCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccceEEEEe
Q 047109 649 VPGALSNL----NFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQ 724 (808)
Q Consensus 649 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 724 (808)
...++++. .........+.+..+++++|.+|+ +|+++.+...+.++.++....+.++++.+. ..+++++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 203 (243)
T 4gvo_A 129 GALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLS-NAKVYFMLG 203 (243)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEE-CCEECCEEC
T ss_pred HHHHHHHHHHhccccceeccccCChHHHHHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCC-CCcEEEEEe
Confidence 77777432 121122345677888999999999 999999999998888876446778888888 889999999
Q ss_pred CCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 725 KGSP-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 725 k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
|++| +++.||++|.+|+++|.++++.+||+..
T Consensus 204 k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 204 KDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 9998 9999999999999999999999999974
No 44
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.88 E-value=2.3e-22 Score=207.95 Aligned_cols=218 Identities=22% Similarity=0.395 Sum_probs=172.9
Q ss_pred ceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC-CCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceecc
Q 047109 442 LIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR-MPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMG 520 (808)
Q Consensus 442 ~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~ 520 (808)
+++.|+++|+++++++++|+++++...+.+ .+|. .+++|++++.+|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 55 ~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~ 133 (284)
T 2a5s_A 55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNG-KHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG 133 (284)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECCSS-SSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEC
T ss_pred ceeeEEhHHHHHHHHHHCCCCEEEEEccCC-ccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcC
Confidence 368999999999999999998777665532 2333 56789999999999999999989999999999999999999999
Q ss_pred EEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcCcccccc
Q 047109 521 IGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLS 599 (808)
Q Consensus 521 ~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s 599 (808)
.+++++++... ++.. .
T Consensus 134 ~~~~~~~~~~~~~~~d----------------------------------l----------------------------- 150 (284)
T 2a5s_A 134 ISVMVSRGTQVTGLSD----------------------------------K----------------------------- 150 (284)
T ss_dssp EEEEEETTCCCCSTTS----------------------------------H-----------------------------
T ss_pred EEEEEECCcccccccc----------------------------------c-----------------------------
Confidence 99999987532 1000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhcc-CCceeeecCCcHHHhhhccCCCcc--ccccc--CCHHHHHH
Q 047109 600 NWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLAS-RDNIGSQLGSFVPGALSNLNFKDS--RLKKY--NSAEEFAN 674 (808)
Q Consensus 600 ~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~--~~~~~--~~~~~~~~ 674 (808)
. .-+.+++ + +.++|++.+++....+.+. ++.. ++..+ ++.+++++
T Consensus 151 -~-------------------------~~~~~~l---~~~~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~ 200 (284)
T 2a5s_A 151 -K-------------------------FQRPHDY---SPPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALV 200 (284)
T ss_dssp -H-------------------------HHSGGGS---SSCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHH
T ss_pred -c-------------------------cCChhHc---CCCceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHH
Confidence 0 0011222 3 6789987666656666442 2221 35556 78999999
Q ss_pred HHhcCCCCCceEEEEechhhHHHHHhcC--CCceEEec--cccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHHH
Q 047109 675 ALSKGSKNGGISAIIDEIPYIKAFLAKY--STDYTMIA--PNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIE 750 (808)
Q Consensus 675 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~--~~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~ 750 (808)
+|.+|+ +|+++.+...+.+++++. | ++.+++ ..+. ..+++++++|++++++.||++|.+++++|.++++.
T Consensus 201 ~l~~G~----vDa~i~d~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~ 274 (284)
T 2a5s_A 201 SLKTGK----LDAFIYDAAVLNYKAGRDEGC-KLVTIGSGYIFA-TTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELE 274 (284)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHHHTCTTS-CEEEEECCCGGG-CEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHcCC----eeEEEEchHHHHHHHhcCCCC-CEEEeCCccccc-cCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 999998 999999999999988875 6 687774 5677 88999999999999999999999999999999999
Q ss_pred HHhcCCCCCCc
Q 047109 751 IEWFNDQQSSF 761 (808)
Q Consensus 751 ~~~~~~~~~~~ 761 (808)
+||+.. .|.
T Consensus 275 ~kw~~~--~c~ 283 (284)
T 2a5s_A 275 TLWLTG--ICH 283 (284)
T ss_dssp HHHTCC--CCC
T ss_pred HHhhhc--cCC
Confidence 999974 675
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.88 E-value=1.1e-21 Score=201.12 Aligned_cols=238 Identities=20% Similarity=0.305 Sum_probs=182.9
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC--CCCCHHHHHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR--MPGSYNDLIDQVY 489 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 489 (808)
++++|+|++. .++||.+.+.++.++ ++++.|+++||++++++++|++++++..+.+ .+|. .+.+|++++.+|.
T Consensus 1 ~~~~l~v~~~--~~pP~~~~~~~~~g~--~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~ 75 (265)
T 2v3u_A 1 GGVVLRVVTV--LEEPFVMVSENVLGK--PKKYQGFSIDVLDALSNYLGFNYEIYVAPDH-KYGSPQEDGTWNGLVGELV 75 (265)
T ss_dssp CCCEEEEEEC--CBTTTBEEECCSTTC--CCEEESHHHHHHHHHHHHHTCEEEEEECTTC-CCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEe--ccCCeEEEecCCCCC--cceEeEEEHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCcchHHHHHH
Confidence 3678999998 569999876543232 1689999999999999999997777655432 2332 3568999999999
Q ss_pred cCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 047109 490 FQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDE 569 (808)
Q Consensus 490 ~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 569 (808)
+|++|++++++++|++|.+.++||.||+....++++++..+..
T Consensus 76 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~------------------------------------- 118 (265)
T 2v3u_A 76 FKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQ------------------------------------- 118 (265)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCC-------------------------------------
T ss_pred cCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCcc-------------------------------------
Confidence 9999999888999999999999999999999999998764321
Q ss_pred CCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeee----c
Q 047109 570 FQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQ----L 645 (808)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~----~ 645 (808)
+++++ . +++++. .
T Consensus 119 -----------------------------------------------------------~~~dL---~-~~v~v~~g~~~ 135 (265)
T 2v3u_A 119 -----------------------------------------------------------SLQDL---S-KQTDIPYGTVL 135 (265)
T ss_dssp -----------------------------------------------------------SHHHH---H-TCSSSCEECBT
T ss_pred -----------------------------------------------------------chhhh---h-hhhcEEEEEec
Confidence 33444 3 344443 3
Q ss_pred CCcHHHhhhccCCCc------------------ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC--CCc
Q 047109 646 GSFVPGALSNLNFKD------------------SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY--STD 705 (808)
Q Consensus 646 ~s~~~~~l~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 705 (808)
++....++++.+... .++..+.+.++++++|.+|+ + +++.+...+.++.++. | +
T Consensus 136 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~~~~~~~-~ 209 (265)
T 2v3u_A 136 DSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVAINDPDC-S 209 (265)
T ss_dssp TSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHHHHCTTC-C
T ss_pred cHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHHhcCCCc-c
Confidence 344444554322211 12356789999999999998 8 8899988888887654 5 6
Q ss_pred eEEeccccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCc
Q 047109 706 YTMIAPNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSF 761 (808)
Q Consensus 706 l~~~~~~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~ 761 (808)
+.+++..+. ..+++++++|++|+.+.||++|.+|+++|.++++.+||+.....|.
T Consensus 210 l~~~~~~~~-~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 210 FYTVGNTVA-DRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp EEEEC---C-CEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred EEEeccccC-CcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 888888887 8899999999999999999999999999999999999999888886
No 46
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=1e-21 Score=196.77 Aligned_cols=219 Identities=17% Similarity=0.317 Sum_probs=186.5
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK 492 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 492 (808)
.++|+|++.. .|+||.+.+. + +++.|+++|+++++++++|++++++ .. +|.+++.+|.+|+
T Consensus 4 a~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g~ 64 (232)
T 3i6v_A 4 ADTVRMGTEG-AYPPYNFIND----A---GEVDGFERELGDELCKRAGLTCEWV--KN---------DWDSIIPNLVSGN 64 (232)
T ss_dssp --CEEEEECS-EETTTEEECT----T---SCEESHHHHHHHHHHHHHTCCEEEE--EC---------CGGGHHHHHHTTS
T ss_pred CCEEEEEECC-CCCCeeEECC----C---CCEeeehHHHHHHHHHHcCCceEEE--EC---------CHHHHHHHHHCCC
Confidence 5789999885 6899998532 2 7899999999999999999866554 44 6899999999999
Q ss_pred ccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCC
Q 047109 493 FDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQG 572 (808)
Q Consensus 493 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 572 (808)
+|+++++++.|++|.+.++||.||+....++++++..
T Consensus 65 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 101 (232)
T 3i6v_A 65 YDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------- 101 (232)
T ss_dssp CSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST-------------------------------------------
T ss_pred CCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC-------------------------------------------
Confidence 9998889999999999999999999999999998653
Q ss_pred CCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHh
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGA 652 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~ 652 (808)
..++ ++ ++|+..|+....+
T Consensus 102 ---------------------------------------------------------~~dL---~g-~igv~~g~~~~~~ 120 (232)
T 3i6v_A 102 ---------------------------------------------------------GADL---SG-IVAAQTATIQAGY 120 (232)
T ss_dssp ---------------------------------------------------------TCCT---TS-EEEEETTSHHHHH
T ss_pred ---------------------------------------------------------hHHh---CC-CEEEecCchHHHH
Confidence 1122 68 9999999999999
Q ss_pred hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecc-ccccccceEEEEeCCCC-Ch
Q 047109 653 LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAP-NYTTTSGFGFVFQKGSP-LV 730 (808)
Q Consensus 653 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~k~sp-~~ 730 (808)
+++. ..++..+++.++++++|.+|+ +|+++.+...+.+++++...++.+++. .+. ..+++++++|++| +.
T Consensus 121 l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~l~ 192 (232)
T 3i6v_A 121 IAES---GATLVEFATPEETIAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPL-GGGVGMGLRESDGELR 192 (232)
T ss_dssp HHHS---SSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEEC-SSCEEEEECTTCHHHH
T ss_pred HHhc---CCeEEEeCCHHHHHHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCC-CCcEEEEEeCCCHHHH
Confidence 9875 457788999999999999998 999999999999988877336777765 355 7889999999988 99
Q ss_pred HHHHHHHHhhhhcCchHHHHHHhcCCCCCCcc
Q 047109 731 HDISRAIAKLREEGTLRKIEIEWFNDQQSSFM 762 (808)
Q Consensus 731 ~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~~ 762 (808)
+.+|++|.+++++|.++++.+||+.....|..
T Consensus 193 ~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 193 GKFDAAITSMKEDGTLNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC-
T ss_pred HHHHHHHHHHHHCChHHHHHHHHcCCCCCccc
Confidence 99999999999999999999999998555444
No 47
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.87 E-value=1.9e-21 Score=195.56 Aligned_cols=225 Identities=18% Similarity=0.309 Sum_probs=187.4
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK 492 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 492 (808)
.++|+|++.. .++||.+.. + .+ +++.|+++|+++.+++++|++++++ .. +|.+++.+|.+|+
T Consensus 2 ~~~l~v~~~~-~~~P~~~~~-~--~~---g~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g~ 63 (237)
T 3kzg_A 2 SLNLTIGTSK-FNPPFEVWS-G--NN---SSLYGFDIDLMQEICRRLHATCTFE--AY---------IFDDLFPALKNRE 63 (237)
T ss_dssp CCEEEEEEES-EETTTEECC-C--TT---SCCBSHHHHHHHHHHHHTTCEEEEE--EE---------CGGGHHHHHHTTS
T ss_pred CceEEEEECC-CCCCeEEEe-C--CC---CCEeeehHHHHHHHHHHhCCceEEE--Ec---------CHHHHHHHHhCCC
Confidence 4689999985 599999851 1 22 7789999999999999999866554 44 6899999999999
Q ss_pred ccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCC
Q 047109 493 FDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQG 572 (808)
Q Consensus 493 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 572 (808)
+|+++++++.+++|.+.++||.||.....++++++..+..
T Consensus 64 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~~~---------------------------------------- 103 (237)
T 3kzg_A 64 VDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKIS---------------------------------------- 103 (237)
T ss_dssp SSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCSCC----------------------------------------
T ss_pred CCEEEEccccChhHhccceeeeeeeecceEEEEECCCCCC----------------------------------------
Confidence 9999888999999999999999999999999998764321
Q ss_pred CCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHh
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGA 652 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~ 652 (808)
+++++ .++++|+..|+.....
T Consensus 104 --------------------------------------------------------~~~dL---~g~~i~~~~g~~~~~~ 124 (237)
T 3kzg_A 104 --------------------------------------------------------TFDDL---HGKKIGVRKGTPYARQ 124 (237)
T ss_dssp --------------------------------------------------------SGGGG---TTCEEEEETTSTHHHH
T ss_pred --------------------------------------------------------CHHHh---CCCEEEEecCCHHHHH
Confidence 45555 8999999999997777
Q ss_pred hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-------CceEEecccc-ccccceEEEEe
Q 047109 653 LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-------TDYTMIAPNY-TTTSGFGFVFQ 724 (808)
Q Consensus 653 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~l~~~~~~~-~~~~~~~~~~~ 724 (808)
+.+. .+..++..+++.++++++|.+|+ +|+++.+...+.++.++.. .++.+++..+ . ..+++++++
T Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~ 198 (237)
T 3kzg_A 125 VLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISI-GEGYSIMAN 198 (237)
T ss_dssp HHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEEC-TTCBCCEEC
T ss_pred HHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCcccc-CccEEEEEc
Confidence 7653 34467888999999999999998 9999999999999888743 2688888777 7 889999999
Q ss_pred CCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCCCCCC
Q 047109 725 KGSP-LVHDISRAIAKLREEGTLRKIEIEWFNDQQSS 760 (808)
Q Consensus 725 k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~ 760 (808)
|++| +.+.+|++|.+++++|.++++.+||+.....|
T Consensus 199 k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 199 PDQFVLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp GGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 9987 99999999999999999999999999974444
No 48
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.87 E-value=4.8e-21 Score=194.20 Aligned_cols=221 Identities=19% Similarity=0.393 Sum_probs=191.3
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .|+||.+. .+ ++..|+++|+++.+++++|++++++. . +|.+++.+|.+|
T Consensus 22 ~~~~l~v~~~~-~~~P~~~~-~~-------g~~~G~~~dl~~~i~~~~g~~~~~~~--~---------~~~~~~~~l~~g 81 (249)
T 4f3p_A 22 MAKELVVGTDT-SFMPFEFK-QG-------DKYVGFDLDLWAEIAKGAGWTYKIQP--M---------DFAGLIPALQTQ 81 (249)
T ss_dssp --CCEEEEEES-CBTTTBEE-ET-------TEEESHHHHHHHHHHHHHTCCEEEEE--E---------CGGGHHHHHHTT
T ss_pred cCceEEEEeCC-CCCCeEEe-cC-------CeEEEEhHHHHHHHHHHcCCceEEEe--c---------CHHHHHHHHHCC
Confidence 66899999985 68999985 22 78999999999999999998766654 3 589999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
++|++++++..+++|.+.++||.||.....++++++..+. .
T Consensus 82 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~-------------------------------------- 123 (249)
T 4f3p_A 82 NIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIK-------------------------------------- 123 (249)
T ss_dssp SCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCC--------------------------------------
T ss_pred CCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCCCcC--------------------------------------
Confidence 9999888899999999999999999999999999877532 1
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+++++ ++++|++..|+...
T Consensus 124 ----------------------------------------------------------~~~dL---~g~~i~v~~g~~~~ 142 (249)
T 4f3p_A 124 ----------------------------------------------------------SIDDL---NGKVIAAKTGTATI 142 (249)
T ss_dssp ----------------------------------------------------------SSGGG---TTSEEEEETTSHHH
T ss_pred ----------------------------------------------------------ChHHh---CCCEEEEeCCChHH
Confidence 45555 89999999999998
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCCC
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSPL 729 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp~ 729 (808)
.++.+. .+..++..+++.++++++|.+|+ +|+++.+...+.++.++. ..++.+++..+. ..+++++++|++|+
T Consensus 143 ~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~k~~~l 216 (249)
T 4f3p_A 143 DWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVS-GDKYGIGFPKGSPL 216 (249)
T ss_dssp HHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEE-EEEEEEEEETTCTH
T ss_pred HHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCC-CccEEEEEcCCchH
Confidence 888763 34567888999999999999998 999999999999988876 346888888777 89999999999999
Q ss_pred hHHHHHHHHhhhhcCchHHHHHHhcCCC
Q 047109 730 VHDISRAIAKLREEGTLRKIEIEWFNDQ 757 (808)
Q Consensus 730 ~~~~~~~i~~l~e~G~~~~~~~~~~~~~ 757 (808)
.+.+|++|.+++++|.++++.+||+...
T Consensus 217 ~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 217 VAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999873
No 49
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.86 E-value=4e-21 Score=196.55 Aligned_cols=238 Identities=18% Similarity=0.286 Sum_probs=186.1
Q ss_pred CCeEEEEeecCCccceEEEeeC---CCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCC--CCC-CHHHHHH
Q 047109 413 INKLRIGVPVNGHIEFVHVVRD---PQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGR--MPG-SYNDLID 486 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~---~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 486 (808)
+++|+|++. .++||.+.+.+ ..++ +++.|+++||++++++++|++++++..+.+ .+|. .++ +|++++.
T Consensus 3 ~~~l~v~~~--~~pP~~~~~~~~~~~~~~---g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 3 NKTVVVTTI--LESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVG 76 (263)
T ss_dssp CCCEEEEEC--CBTTTBEECTTGGGCCGG---GGEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCBCTTTCCBCHHHH
T ss_pred CeEEEEEEe--cCCCcEEEecCcccccCC---CceeeeHHHHHHHHHHHcCceEEEEEcccc-ccCccCCCCCCcHHHHH
Confidence 578999998 68999986432 0012 789999999999999999997766655321 2231 333 7999999
Q ss_pred HHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeeccc
Q 047109 487 QVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPI 566 (808)
Q Consensus 487 ~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 566 (808)
+|.+|++|++++++++|++|.+.++||.||+....++++++..+..
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~---------------------------------- 122 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE---------------------------------- 122 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCC----------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccccC----------------------------------
Confidence 9999999999888999999999999999999999999998764321
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCc---eee
Q 047109 567 NDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDN---IGS 643 (808)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~---i~~ 643 (808)
+++++ .+++ +|+
T Consensus 123 --------------------------------------------------------------~~~dL---~g~~~~~ig~ 137 (263)
T 1mqi_A 123 --------------------------------------------------------------SAEDL---SKQTEIAYGT 137 (263)
T ss_dssp --------------------------------------------------------------SHHHH---HTCSSSEEEC
T ss_pred --------------------------------------------------------------CHHHH---hcccCeeEEE
Confidence 34454 5666 565
Q ss_pred ecCCcHHHhhhccCCC-----------cccccccCCHHHHHHHH--hcCCCCCceEEEEechhhHHHHHhcC-CCceEEe
Q 047109 644 QLGSFVPGALSNLNFK-----------DSRLKKYNSAEEFANAL--SKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMI 709 (808)
Q Consensus 644 ~~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l--~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~ 709 (808)
+.+.+....+.+.... ...+..+.+..+++++| .+|+ ++++.+...+.++.++. + ++.++
T Consensus 138 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~~~~~~~-~~~~~ 211 (263)
T 1mqi_A 138 LDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYIEQRKPC-DTMKV 211 (263)
T ss_dssp BSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHHTTSTTC-CEEEE
T ss_pred EeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHHHhcCCC-ceEEc
Confidence 5444444444332221 12467788999999999 6665 68888988888887766 5 67778
Q ss_pred ccccccccceEEEEeCCCCChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCcc
Q 047109 710 APNYTTTSGFGFVFQKGSPLVHDISRAIAKLREEGTLRKIEIEWFNDQQSSFM 762 (808)
Q Consensus 710 ~~~~~~~~~~~~~~~k~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~~ 762 (808)
+..+. ..+++++++|++++.+.+|++|.+|+++|.++++.+||+...+.|+.
T Consensus 212 ~~~~~-~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~~ 263 (263)
T 1mqi_A 212 GGNLD-SKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGS 263 (263)
T ss_dssp SCCSC-CEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC-
T ss_pred CCccc-ccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCCC
Confidence 87787 88999999999999999999999999999999999999999888863
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.86 E-value=7.1e-21 Score=192.43 Aligned_cols=229 Identities=23% Similarity=0.424 Sum_probs=194.3
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
+.++|+|++.. .++||.+.+.+ +++.|+++|+++.+++++|+++++ .+. +|.+++.+|.+|
T Consensus 3 ~~~~l~v~~~~-~~~P~~~~~~~-------g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 63 (245)
T 3k4u_A 3 LRGELRVGLEP-GYLPFEMKDKK-------GNVIGFDVDLAREMAKAMGVKLKL--VPT---------SWDGLIPGLVTE 63 (245)
T ss_dssp CCSEEEEEECT-TSTTTCEEETT-------TEEESHHHHHHHHHHHHHTCEEEE--EEC---------CGGGHHHHHHTT
T ss_pred cCCeEEEEECC-CcCCeeEECCC-------CCCccchHHHHHHHHHHhCCeEEE--EEc---------cHHHHHHHHhCC
Confidence 45789999985 78999986432 789999999999999999986555 444 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|+++++++.+++|.+.+.||.||+....++++++.....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 104 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKG--------------------------------------- 104 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTT---------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccc---------------------------------------
Confidence 99998888999999999999999999999999998874221
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhcc--CCceeeecCCcH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLAS--RDNIGSQLGSFV 649 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~--~~~i~~~~~s~~ 649 (808)
+-+++++ . ++++|+..|+..
T Consensus 105 -------------------------------------------------------i~~~~dL---~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 105 -------------------------------------------------------VKSYKDL---DKPELTLVTKFGVSA 126 (245)
T ss_dssp -------------------------------------------------------CCSGGGG---CCSSCEEEEETTSHH
T ss_pred -------------------------------------------------------cCCHHHh---ccCCcEEEEeCCcHH
Confidence 0034454 5 889999999999
Q ss_pred HHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCC
Q 047109 650 PGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSP 728 (808)
Q Consensus 650 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp 728 (808)
..++.+. .+..++..+++..+++++|.+|+ +|+++.+...+.+++++. ...+..++..+. ..+++++++|++|
T Consensus 127 ~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 127 EYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLT-YEPLGWAIKKGDP 200 (245)
T ss_dssp HHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCS-CEEECCEECTTCH
T ss_pred HHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcc-cccEEEEEcCCCH
Confidence 9888763 44567888999999999999998 999999998888887765 346777888888 8999999999999
Q ss_pred -ChHHHHHHHHhhhhcCchHHHHHHhcCCCCCCcc
Q 047109 729 -LVHDISRAIAKLREEGTLRKIEIEWFNDQQSSFM 762 (808)
Q Consensus 729 -~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~~~~ 762 (808)
+.+.+|++|.+++++|.++++.+||+.....+..
T Consensus 201 ~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~~ 235 (245)
T 3k4u_A 201 DFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK 235 (245)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSGGGC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhcCccccchh
Confidence 9999999999999999999999999998555554
No 51
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.85 E-value=1.3e-20 Score=193.29 Aligned_cols=222 Identities=19% Similarity=0.319 Sum_probs=191.1
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .|+||.+.+. + ++..|+++|+++.+++++|+++++ .+. +|.+++.+|.+|
T Consensus 19 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 79 (268)
T 3hv1_A 19 KEKKIKIGFDA-TFVPMGYEEK----D---GSYIGFDIDLANAVFKLYGIDVEW--QAI---------DWDMKETELKNG 79 (268)
T ss_dssp HHTEEEEEECT-EETTTEEECT----T---SCEECHHHHHHHHHHHTTTCEEEE--EEC---------CGGGHHHHHHHT
T ss_pred cCCcEEEEECC-CCCCceEECC----C---CCEEEehHHHHHHHHHHhCCcEEE--EEC---------CHHHHHHHHHCC
Confidence 56899999986 7899998532 2 789999999999999999985554 554 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|++++++..+++|.+.++||.||.....++++++.....
T Consensus 80 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~i~--------------------------------------- 120 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSGID--------------------------------------- 120 (268)
T ss_dssp SCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGCCC---------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCCCC---------------------------------------
Confidence 99999888999999999999999999999999998764211
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
+++++ .++++|+..|+....
T Consensus 121 ---------------------------------------------------------~~~dL---~g~~i~v~~g~~~~~ 140 (268)
T 3hv1_A 121 ---------------------------------------------------------SVAGM---AGKTLGAQAGSSGYD 140 (268)
T ss_dssp ---------------------------------------------------------SSGGG---TTCCEEEETTCHHHH
T ss_pred ---------------------------------------------------------CHHHh---CCCEEEEEeCCchHH
Confidence 45555 899999999999988
Q ss_pred hhhccC------CCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC--CceEEeccccccccceEEEE
Q 047109 652 ALSNLN------FKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS--TDYTMIAPNYTTTSGFGFVF 723 (808)
Q Consensus 652 ~l~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~ 723 (808)
++.+.. .+..++..+++.++++++|.+|+ +|+++.+...+.++.++.. .++.+++..+. ..++++++
T Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 215 (268)
T 3hv1_A 141 AFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYE-GESFAVGA 215 (268)
T ss_dssp HHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSC-CEEECCEE
T ss_pred HHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCCCC-CCcEEEEE
Confidence 775432 33356788899999999999999 9999999999999888763 47888888787 88999999
Q ss_pred eCCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 724 QKGSP-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 724 ~k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+|++| +.+.||++|.+++++|.++++.+||+..
T Consensus 216 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 216 RKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 99998 9999999999999999999999999987
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.85 E-value=2.2e-20 Score=188.44 Aligned_cols=221 Identities=19% Similarity=0.311 Sum_probs=188.9
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .++||.+.+. + +++.|+++|+++.+++++|+++++ .+. +|.+++..|.+|
T Consensus 9 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 69 (242)
T 3del_B 9 NSEKFIVGTNA-TYPPFEFVDK----R---GEVVGFDIDLAREISNKLGKTLDV--REF---------SFDALILNLKQH 69 (242)
T ss_dssp --CEEEEEECS-CBTTTBEECT----T---SCEESHHHHHHHHHHHHHTCEEEE--EEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeCC-CCCCeeEECC----C---CCEEEeeHHHHHHHHHHcCCceEE--EEc---------CHHHHHHHHhCC
Confidence 56899999975 7899998532 2 789999999999999999975544 454 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccce--eccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYT--DMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDE 569 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~--~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 569 (808)
++|++++++..+++|.+.++| .||+ ....++++++.....
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~i~------------------------------------- 111 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGENKH------------------------------------- 111 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCCSC-------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCCCC-------------------------------------
Confidence 999998889999999999999 9999 889999998763211
Q ss_pred CCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcH
Q 047109 570 FQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFV 649 (808)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~ 649 (808)
+++++ +++++|+..|+..
T Consensus 112 -----------------------------------------------------------~~~dL---~g~~i~v~~g~~~ 129 (242)
T 3del_B 112 -----------------------------------------------------------PLPLT---QYRSVAVQTGTYQ 129 (242)
T ss_dssp -----------------------------------------------------------CCCGG---GSSCEEEETTSHH
T ss_pred -----------------------------------------------------------CHHHh---CCCEEEEEcCcHH
Confidence 34555 8999999999999
Q ss_pred HHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccc----eEEEEeC
Q 047109 650 PGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSG----FGFVFQK 725 (808)
Q Consensus 650 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~k 725 (808)
..++.+ .+..++..+++.++++++|.+|+ +|+++.+...+.++.++.. .+.+++..+. ..+ ++++++|
T Consensus 130 ~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~k 201 (242)
T 3del_B 130 EAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----SPVAVLEPSIAQVVLKDFP-ALSTATIDLP-EDQWVLGYGIGVAS 201 (242)
T ss_dssp HHHHHH--STTCCEEEESSHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCT-TEEEEEEECC-GGGCEEEEEEEEET
T ss_pred HHHHHh--CCCceEEEECCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCC-CeEEecCccC-cccccceEEEEEeC
Confidence 999976 45667888999999999999998 9999999999999988776 5888877776 777 9999999
Q ss_pred CCC-ChHHHHHHHHhhhhcCchHHHHHHhcCCCCC
Q 047109 726 GSP-LVHDISRAIAKLREEGTLRKIEIEWFNDQQS 759 (808)
Q Consensus 726 ~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~~~~ 759 (808)
++| +.+.||++|.+++++|.++++.+||+.....
T Consensus 202 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~ 236 (242)
T 3del_B 202 DRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLE 236 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCc
Confidence 988 9999999999999999999999999987333
No 53
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.84 E-value=4.1e-20 Score=184.24 Aligned_cols=219 Identities=24% Similarity=0.393 Sum_probs=182.6
Q ss_pred CeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcc
Q 047109 414 NKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKF 493 (808)
Q Consensus 414 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 493 (808)
++|+|++.. .++||.+.+.+ ++..|+++|+++.+++++|++++++ +. +|.+++.++.+|++
T Consensus 2 ~~l~v~~~~-~~~P~~~~~~~-------g~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 2 DTIKFATEA-TYPPYVYMGPS-------GQVEGFGADIVKAVCKQMQAVCTIS--NQ---------PWDSLIPSLKLGKF 62 (227)
T ss_dssp CEEEEEECS-CBTTTBEEC---------CCEESHHHHHHHHHHHHTTCEEEEE--EC---------CHHHHHHHHHHTSC
T ss_pred ceEEEEEcC-CCCCeeEECCC-------CCcccchHHHHHHHHHHhCCeEEEE--eC---------CHHHHHHHHhCCCC
Confidence 689999985 69999985322 7899999999999999999865554 44 69999999999999
Q ss_pred cEEEeceeeeccccceeeccccceeccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCC
Q 047109 494 DAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQG 572 (808)
Q Consensus 494 Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 572 (808)
|++++++..+++|.+.+.||.|+.....++++++..+. .
T Consensus 63 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~---------------------------------------- 102 (227)
T 3tql_A 63 DALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPLTL---------------------------------------- 102 (227)
T ss_dssp SEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCCCC----------------------------------------
T ss_pred CEEEecCcCCHhHHhheecccceeccceEEEEeCCCCCCC----------------------------------------
Confidence 99988899999999999999999999999999887542 1
Q ss_pred CCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHh
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGA 652 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~ 652 (808)
+++++ +++++|+..|+....+
T Consensus 103 --------------------------------------------------------~~~dL---~g~~v~~~~g~~~~~~ 123 (227)
T 3tql_A 103 --------------------------------------------------------SKQGL---KGKIIGVQGGTTFDSY 123 (227)
T ss_dssp --------------------------------------------------------STTTT---TTCEEEEETTSHHHHH
T ss_pred --------------------------------------------------------CHHHh---CCCEEEEEecccHHHH
Confidence 34455 8999999999999988
Q ss_pred hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-CceEEecccccc----ccceEEEEeCCC
Q 047109 653 LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-TDYTMIAPNYTT----TSGFGFVFQKGS 727 (808)
Q Consensus 653 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~----~~~~~~~~~k~s 727 (808)
+.+......++..+.+.++++++|.+|+ +|+++.+...+.++.++.. .++.+++..+.. ..+++++++|++
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (227)
T 3tql_A 124 LQDSFGNSITIQRYPSEEDALMDLTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGN 199 (227)
T ss_dssp HHHHHGGGSEEEEESSHHHHHHHHTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTC
T ss_pred HHHhccccceEEEcCCHHHHHHHHHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCC
Confidence 8664322157788999999999998888 9999999999998887763 247776544430 235689999999
Q ss_pred C-ChHHHHHHHHhhhhcCchHHHHHHhc
Q 047109 728 P-LVHDISRAIAKLREEGTLRKIEIEWF 754 (808)
Q Consensus 728 p-~~~~~~~~i~~l~e~G~~~~~~~~~~ 754 (808)
| +.+.+|++|.+++++|.++++.+||+
T Consensus 200 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 200 QALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 8 99999999999999999999999996
No 54
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.84 E-value=7e-20 Score=183.42 Aligned_cols=223 Identities=19% Similarity=0.318 Sum_probs=185.8
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
++++|+|++. +++||.+.+.+ .+ +++.|+++|+++.+++++|++++++..+ +|.+++..|.+|
T Consensus 2 ~~~~l~v~~~--~~~P~~~~~~~--~~---g~~~G~~~dl~~~i~~~~g~~~~~~~~~----------~~~~~~~~l~~g 64 (233)
T 1ii5_A 2 SAMALKVGVV--GNPPFVFYGEG--KN---AAFTGISLDVWRAVAESQKWNSEYVRQN----------SISAGITAVAEG 64 (233)
T ss_dssp CSCCEEEEEC--CCTTTCEEC----------CEESHHHHHHHHHHHHHTCCEEEEECS----------CHHHHHHHHHTT
T ss_pred CCceEEEEec--CCCCeEEEecC--CC---CCEEEEeHHHHHHHHHHcCCcEEEEEeC----------CHHHHHHHHHCC
Confidence 3578999997 68999985211 22 7899999999999999999876665442 689999999999
Q ss_pred cccEEEeceeeecccc--ceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 047109 492 KFDAVVGETTITANRS--LYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDE 569 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~--~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 569 (808)
++|++++++..+++|. +.++||.||.....++++++..+..
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~------------------------------------- 107 (233)
T 1ii5_A 65 ELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPL------------------------------------- 107 (233)
T ss_dssp SCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTT-------------------------------------
T ss_pred CcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCC-------------------------------------
Confidence 9999988888999998 9999999999999999998774310
Q ss_pred CCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcH
Q 047109 570 FQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFV 649 (808)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~ 649 (808)
+-+++++ .++++++..++..
T Consensus 108 ---------------------------------------------------------i~~~~dL---~g~~v~~~~g~~~ 127 (233)
T 1ii5_A 108 ---------------------------------------------------------FRSVGDL---KNKEVAVVRDTTA 127 (233)
T ss_dssp ---------------------------------------------------------CSSGGGG---TTCEEEEETTSHH
T ss_pred ---------------------------------------------------------CCCHHHh---CCCeEEEECCccH
Confidence 0145555 8999999999999
Q ss_pred HHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCC
Q 047109 650 PGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSP 728 (808)
Q Consensus 650 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp 728 (808)
..++.+. ..++..+.+..+++++|.+|+ +|+++.+...+.++.++. ...+.+++..+. ..+++++++|++|
T Consensus 128 ~~~l~~~---~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 128 VDWANFY---QADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVS-LEPYGFVLKENSP 199 (233)
T ss_dssp HHHHHHT---TCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSE-EEEEEEEEETTCT
T ss_pred HHHHHHc---CCCeEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCcccc-ccceEEEEcCCch
Confidence 9888764 346778899999999999998 999999999998888766 236888877777 8889999999999
Q ss_pred ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 ~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+.+.+|++|.+++++|.++++.+||+..
T Consensus 200 l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 200 LQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999999975
No 55
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.83 E-value=2.6e-20 Score=187.51 Aligned_cols=221 Identities=14% Similarity=0.177 Sum_probs=184.5
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
++++|+|++.. .++||.+.+. + ++..|+++|+++.+++++|+++++ .+. +|.+++.+|.+|
T Consensus 13 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 73 (239)
T 3kbr_A 13 ESGVLRVATTG-DYKPFSYRTE----E---GGYAGFDVDMAQRLAESLGAKLVV--VPT---------SWPNLMRDFADD 73 (239)
T ss_dssp HHTEEEEEECS-EETTTEEECT----T---SCEESHHHHHHHHHHHHTTCEEEE--EEC---------CTTTHHHHHHTT
T ss_pred hCCeEEEEECC-CCCCeeEECC----C---CCEEeehHHHHHHHHHHHCCceEE--EEe---------CHHHHHHHHHCC
Confidence 56899999975 6899998532 2 789999999999999999986555 444 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|+++++++.|++|.+.++||.||+....++++++.+...
T Consensus 74 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 114 (239)
T 3kbr_A 74 RFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR--------------------------------------- 114 (239)
T ss_dssp CCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG---------------------------------------
T ss_pred CcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc---------------------------------------
Confidence 99999888999999999999999999999999998764210
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhcc--CCceeeecCCcH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLAS--RDNIGSQLGSFV 649 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~--~~~i~~~~~s~~ 649 (808)
+-+++++ . ++++|+..|+..
T Consensus 115 -------------------------------------------------------i~~~~dL---~~~g~~v~~~~g~~~ 136 (239)
T 3kbr_A 115 -------------------------------------------------------FQTLEQI---DQPGVTAIVNPGGTN 136 (239)
T ss_dssp -------------------------------------------------------GSSHHHH---SSTTCEEEECTTSHH
T ss_pred -------------------------------------------------------cCCHHHh---cCCCcEEEEcCCCcH
Confidence 0034444 5 789999999999
Q ss_pred HHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEec--cccccccceEEEEeCCC
Q 047109 650 PGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIA--PNYTTTSGFGFVFQKGS 727 (808)
Q Consensus 650 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~k~s 727 (808)
..++.+. .+..++..+++..+++++|.+|+ +|+++.+...+.++.++.. ++.++. ..+. ..+++++++| +
T Consensus 137 ~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~k-~ 208 (239)
T 3kbr_A 137 EKFARAN-LKKARILVHPDNVTIFQQIVDGK----ADLMMTDAIEARLQSRLHP-ELCAVHPQQPFD-FAEKAYLLPR-D 208 (239)
T ss_dssp HHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----CSEEEEEHHHHHHHHHHCT-TEEECCCC-CCC-CEEECCEECS-C
T ss_pred HHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----cCEEEEchHHHHHHHHhCC-CcEEecCCCCcc-ccceEEEEcC-C
Confidence 9888763 45567888999999999999998 9999999999999888765 466554 3466 8889999999 6
Q ss_pred C-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 728 P-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 728 p-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+ +.+.+|++|.+++++|.++++.+||+..
T Consensus 209 ~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 209 EAFKRYVDQWLHIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHhcc
Confidence 6 9999999999999999999999999964
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.83 E-value=9e-20 Score=182.74 Aligned_cols=220 Identities=13% Similarity=0.226 Sum_probs=189.1
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .++||.+.+. + ++..|+++|+++.+++++|++++++. . +|.+++..+.+|
T Consensus 9 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~~~--~---------~~~~~~~~l~~g 69 (234)
T 3h7m_A 9 RHRTIVVGGDR-DYPPYEFIDQ----N---GKPAGYNVELTRAIAEVMGMTVEFRL--G---------AWSEMFSALKSG 69 (234)
T ss_dssp SSSCEEEEEET-EETTTEEECT----T---SCEESHHHHHHHHHHHHHTCCEEEEE--E---------CGGGHHHHHHTT
T ss_pred CCCEEEEEecC-CCCCeEEECC----C---CCEeeeEHHHHHHHHHHcCCceEEEe--C---------CHHHHHHHHhCC
Confidence 46789999965 7899998532 2 78999999999999999998766653 3 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
++|++ .+++.+++|.+.+.||.|+.....++++++..+. .
T Consensus 70 ~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~-------------------------------------- 110 (234)
T 3h7m_A 70 RVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAA-------------------------------------- 110 (234)
T ss_dssp SSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCS--------------------------------------
T ss_pred CeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCCCCC--------------------------------------
Confidence 99995 6788999999999999999999999999887541 1
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+++++ +++++++..|+...
T Consensus 111 ----------------------------------------------------------~~~dL---~g~~i~~~~g~~~~ 129 (234)
T 3h7m_A 111 ----------------------------------------------------------GLEDL---RGRKVALHRDGIMH 129 (234)
T ss_dssp ----------------------------------------------------------SGGGG---TTSCEEEETTSHHH
T ss_pred ----------------------------------------------------------CHHHh---CCCEEEEEeCchHH
Confidence 45555 89999999999999
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCC-
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSP- 728 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp- 728 (808)
.++.+.. +..++..+++..+++++|.+|+ +|+++.+...+.++.++. ..++.+++..+. ..+++++++|++|
T Consensus 130 ~~l~~~~-~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 203 (234)
T 3h7m_A 130 EYLAERG-YGKDLVLTPTPADALRLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIA-AQRYGYAVRQGDAE 203 (234)
T ss_dssp HHHHTTT-CGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEE-EEEEEEEEETTCHH
T ss_pred HHHHhcC-CCceEEEeCCHHHHHHHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccC-CCceEEEEeCCCHH
Confidence 9887643 3457788999999999999998 999999999998888765 346888877777 8899999999998
Q ss_pred ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 ~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+.+.||++|.+++++|.++++.+||+..
T Consensus 204 l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 204 LLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 9999999999999999999999999975
No 57
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.82 E-value=1.1e-19 Score=186.30 Aligned_cols=220 Identities=11% Similarity=0.195 Sum_probs=185.0
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .++||.+.+. + +++.|+++|+++.+++++|++++++..+ +|.+++.+|.+|
T Consensus 30 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~lg~~~~~~~~~----------~~~~~~~~l~~G 91 (267)
T 3mpk_A 30 DHPVVKVAVLN-LFAPFTLFRT----D---EQFGGISAAVLQLLQLRTGLDFEIIGVD----------TVEELIAKLRSG 91 (267)
T ss_dssp HCSEEEEEEET-EETTTEECCT----T---CCCBSHHHHHHHHHHHHHCCEEEEEEES----------SHHHHHHHHHHT
T ss_pred hCCcEEEEeCC-CCCCeEEECC----C---CcEeeeHHHHHHHHHHHHCCeEEEEecC----------CHHHHHHHHHCC
Confidence 67899999975 5899998432 2 7789999999999999999866555332 699999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
++|++. +++.+++|.+.+.||.||.....++++++.... .
T Consensus 92 ~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~-------------------------------------- 132 (267)
T 3mpk_A 92 EADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPV-------------------------------------- 132 (267)
T ss_dssp SCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTSCS--------------------------------------
T ss_pred CccEEe-cccCChhhhcceEechhhccCceEEEEECCCCCCC--------------------------------------
Confidence 999975 789999999999999999999999999877432 1
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+++++ +++++|+..|+...
T Consensus 133 ----------------------------------------------------------~~~dL---~g~~i~v~~g~~~~ 151 (267)
T 3mpk_A 133 ----------------------------------------------------------DADHL---DGRTVALVRNSAAI 151 (267)
T ss_dssp ----------------------------------------------------------SGGGC---TTCEEEEETTCTHH
T ss_pred ----------------------------------------------------------CHHHH---CCCEEEEeCCchhH
Confidence 34555 89999999999999
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccc-cccccceEEEEeCCCC
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPN-YTTTSGFGFVFQKGSP 728 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~k~sp 728 (808)
.++.+ ..+..++..+++.++++++|.+|+ +|+++.+...+.+++++. ..++.+.+.. .. ..+++++++|++|
T Consensus 152 ~~l~~-~~~~~~~~~~~~~~~~l~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 152 PLLQR-RYPQAKVVTADNPSEAMLMVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLP-PAEIALATTRGQT 225 (267)
T ss_dssp HHHHH-HCTTSEEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSC-CEEEEEEEETTCH
T ss_pred HHHHH-hCCCcEEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCC-ceeEEEEEcCCCH
Confidence 98875 344667888999999999999998 999999999998888874 3367777653 24 7789999999998
Q ss_pred -ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 -LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 -~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+.+.+|++|.+++++| ++++.+||+..
T Consensus 226 ~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 226 ELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred HHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 9999999999999997 99999999975
No 58
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.82 E-value=3.1e-19 Score=177.69 Aligned_cols=220 Identities=20% Similarity=0.372 Sum_probs=185.9
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK 492 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 492 (808)
.++|+|++.. .++||.+.+ + ++..|+++|+++.+++++|++++++. . +|.+++..+.+|+
T Consensus 2 ~~~l~v~~~~-~~~P~~~~~-~-------g~~~G~~~dl~~~~~~~~g~~~~~~~--~---------~~~~~~~~l~~g~ 61 (226)
T 1wdn_A 2 DKKLVVATDT-AFVPFEFKQ-G-------DLYVGFDVDLWAAIAKELKLDYELKP--M---------DFSGIIPALQTKN 61 (226)
T ss_dssp --CEEEEEES-SBTTTBEEE-T-------TEEESHHHHHHHHHHHHHTCCEEEEE--E---------CGGGHHHHHHTTS
T ss_pred CceEEEEECC-CCCCeeEec-C-------CcEEEeeHHHHHHHHHHhCCEEEEEE--C---------CHHHHHHHHhCCC
Confidence 3679999985 789998853 1 67899999999999999998666553 3 6899999999999
Q ss_pred ccEEEeceeeeccccceeeccccceeccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 493 FDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 493 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
+|++++++..+++|.+.+.|+.|+.....++++++.++. .
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~--------------------------------------- 102 (226)
T 1wdn_A 62 VDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVK--------------------------------------- 102 (226)
T ss_dssp SSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCSCS---------------------------------------
T ss_pred CCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCCCCC---------------------------------------
Confidence 999988888899999999999999999999999876531 1
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
+++++ .++++++..|+....
T Consensus 103 ---------------------------------------------------------~~~dL---~g~~i~~~~g~~~~~ 122 (226)
T 1wdn_A 103 ---------------------------------------------------------SVKDL---DGKVVAVKSGTGSVD 122 (226)
T ss_dssp ---------------------------------------------------------SSTTT---TTCEEEEETTSHHHH
T ss_pred ---------------------------------------------------------CHHHh---CCCEEEEEcCCcHHH
Confidence 44555 789999999999988
Q ss_pred hhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-CceEEeccccccccceEEEEeCCCC-C
Q 047109 652 ALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-TDYTMIAPNYTTTSGFGFVFQKGSP-L 729 (808)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~k~sp-~ 729 (808)
++++. .+..++..+++..+++++|.+|+ +|+++.+...+.++.++.. .++.+++..+. ..+++++++|++| +
T Consensus 123 ~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~k~~~~l 196 (226)
T 1wdn_A 123 YAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLE-AQQYGIAFPKGSDEL 196 (226)
T ss_dssp HHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEE-EEEEEEEECTTCHHH
T ss_pred HHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcc-cCceEEEEeCCCHHH
Confidence 88763 33456778899999999999998 9999999998888887762 36887776666 7889999999986 9
Q ss_pred hHHHHHHHHhhhhcCchHHHHHHhcCCC
Q 047109 730 VHDISRAIAKLREEGTLRKIEIEWFNDQ 757 (808)
Q Consensus 730 ~~~~~~~i~~l~e~G~~~~~~~~~~~~~ 757 (808)
.+.+|++|.+++++|.++++.+||+...
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 197 RDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 9999999999999999999999999763
No 59
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.82 E-value=3.1e-19 Score=181.93 Aligned_cols=222 Identities=17% Similarity=0.244 Sum_probs=186.2
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .++||.+.+. + +++.|+++|+++.+++++|+++++ ++. +|++++..|.+|
T Consensus 27 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 87 (259)
T 4dz1_A 27 EGRTLNVAVSP-ASPPMLFKSA----D---GKLQGIDLELFSSYCQSRHCKLNI--TEY---------AWDGMLGAVASG 87 (259)
T ss_dssp TTCEEEEEECC-CBTTTBEECT----T---CCEESHHHHHHHHHHHHHTCEEEE--EEC---------CHHHHHHHHHHT
T ss_pred cCCeEEEEECC-CCCCeEEECC----C---CCEEEeHHHHHHHHHHHhCCeEEE--EEc---------CHHHHHHHHhCC
Confidence 45889999975 6899998532 2 789999999999999999985554 544 699999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|+++++++.+++|.+.++||.||+.....+++++++...
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 128 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT--------------------------------------- 128 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCC---------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCC---------------------------------------
Confidence 99999888999999999999999999999999998764321
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
+-+++++ +++++|+..|+....
T Consensus 129 -------------------------------------------------------i~~~~dL---~g~~v~v~~g~~~~~ 150 (259)
T 4dz1_A 129 -------------------------------------------------------LNNLNEL---NKYSIGYPRGMAYSD 150 (259)
T ss_dssp -------------------------------------------------------CCSGGGG---GGSCEEEETTSTHHH
T ss_pred -------------------------------------------------------CCCHHHh---CCCEEEEeCCcHHHH
Confidence 0034555 899999999999988
Q ss_pred hhhccCCCc------ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccceEEEEeC
Q 047109 652 ALSNLNFKD------SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQK 725 (808)
Q Consensus 652 ~l~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 725 (808)
++++.. +. .++..+++.++++++|.+|+ +|+++.+...+.++.++....+........ ..+++++++|
T Consensus 151 ~l~~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k 224 (259)
T 4dz1_A 151 LIKNDL-EPKGYYSLSKVKLYPTYNETMADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKN-VDQLGIAFKK 224 (259)
T ss_dssp HHHHHT-GGGTSCCGGGCEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEE-EEEEEEEEET
T ss_pred HHHHhc-ccccccccceeEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCC-CceEEEEEeC
Confidence 886532 22 57788999999999999999 999999999888877766436776666666 8889999999
Q ss_pred CCCChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 726 GSPLVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 726 ~sp~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
++++.+.+|++|.+ ..+|.++++.++|...
T Consensus 225 ~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 225 GSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp TCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 99999999999999 8889999999999986
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.81 E-value=2.3e-19 Score=181.31 Aligned_cols=221 Identities=14% Similarity=0.217 Sum_probs=182.5
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCC-CceeEEEEecCCCCCCCCCCHHHHHHHHHc
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLT-FEVPYEFIPFEDPNGRMPGSYNDLIDQVYF 490 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (808)
..++|+|++.. .++||.+ ..+ ++..|+++|+++.+++++| +++ ++.+. +|.+++.+|.+
T Consensus 6 ~~~~l~v~~~~-~~~P~~~-~~~-------g~~~G~~~dl~~~i~~~~g~~~~--~~~~~---------~~~~~~~~l~~ 65 (246)
T 4eq9_A 6 SKKEIIVATNG-SPRPFIY-EEN-------GELTGYEIEVVRAIFKDSDKYDV--KFEKT---------EWSGVFAGLDA 65 (246)
T ss_dssp -CEEEEEEECC-CSTTTSE-EET-------TEEESHHHHHHHHHHTTCSSEEE--EEEEC---------CHHHHHHHHHT
T ss_pred CCCEEEEEeCC-CcCCeEE-cCC-------CCCcccHHHHHHHHHHHcCCceE--EEEeC---------CHHHHHHHHhC
Confidence 45789999986 7899998 322 7899999999999999999 754 44554 69999999999
Q ss_pred CcccEEEeceeeeccccceeeccccceeccEEEEEecC-CCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 047109 491 QKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTD-RNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDE 569 (808)
Q Consensus 491 g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~-~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 569 (808)
|++|+++++++.+++|.+.+.||.||.....++++++. ....
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~------------------------------------- 108 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIK------------------------------------- 108 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCS-------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCCCCC-------------------------------------
Confidence 99999988889999999999999999999999999883 3211
Q ss_pred CCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcH
Q 047109 570 FQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFV 649 (808)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~ 649 (808)
+++++ .++++|+..|+..
T Consensus 109 -----------------------------------------------------------~~~dL---~g~~i~~~~g~~~ 126 (246)
T 4eq9_A 109 -----------------------------------------------------------SLDDI---GGKSTEVVQATTS 126 (246)
T ss_dssp -----------------------------------------------------------SGGGC---TTCEEEECTTCHH
T ss_pred -----------------------------------------------------------CHHHh---CCCEEEEecCccH
Confidence 34455 8999999999998
Q ss_pred HHhhhcc--CCCc--cccc-ccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccc-eEEE
Q 047109 650 PGALSNL--NFKD--SRLK-KYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSG-FGFV 722 (808)
Q Consensus 650 ~~~l~~~--~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~-~~~~ 722 (808)
..++.+. ..+. ..+. ...+.++++++|.+|+ +|+++.+...+.+++++. ..++.+++.... ..+ ++++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 201 (246)
T 4eq9_A 127 AKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPSD-QQPYVYPL 201 (246)
T ss_dssp HHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCCS-SCCEECCE
T ss_pred HHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcCC-CCCcEEEE
Confidence 8888651 1222 2333 2358899999999998 999999999999888765 346888877666 555 8899
Q ss_pred EeCCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 723 FQKGSP-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 723 ~~k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
++|++| +.+.||++|.+++++|.++++.+||+..
T Consensus 202 ~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 202 LAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 999998 9999999999999999999999999986
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.81 E-value=4.2e-19 Score=177.22 Aligned_cols=219 Identities=20% Similarity=0.366 Sum_probs=184.3
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .++||.+.+. + ++..|+++|+++.+++++|++++++ .. +|.+++..+.+|
T Consensus 4 ~a~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g 64 (229)
T 2y7i_A 4 SARTLHFGTSA-TYAPYEFVDA----D---NKIVGFDIDVANAVCKEMQAECSFT--NQ---------SFDSLIPSLRFK 64 (229)
T ss_dssp SCCEEEEEECC-CBTTTBEECT----T---SCEESHHHHHHHHHHHHTTCEEEEE--EC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeCC-CcCCceEECC----C---CCCcceeHHHHHHHHHHhCCeEEEE--Ec---------CHHHHHHHHhCC
Confidence 35789999965 7899987532 2 7899999999999999999865554 44 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceec-cEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDM-GIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~-~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
++|++++++..+++|.+.+.|+.|+... ..++++++.. ..
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~~-------------------------------------- 105 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YH-------------------------------------- 105 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-CC--------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-CC--------------------------------------
Confidence 9999987788999999999999999999 9999998764 21
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+++++ +++++|+..|+...
T Consensus 106 ----------------------------------------------------------~~~dL---~g~~v~~~~g~~~~ 124 (229)
T 2y7i_A 106 ----------------------------------------------------------TFADL---KGKKVGLENGTTHQ 124 (229)
T ss_dssp ----------------------------------------------------------STGGG---TTCEEEEETTSHHH
T ss_pred ----------------------------------------------------------CHHHH---CCCEEEEecCCcHH
Confidence 45555 89999999999998
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecccccc----ccceEEEEeCC
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTT----TSGFGFVFQKG 726 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~k~ 726 (808)
.++++. .+..++..+.+..+++++|.+|+ +|+++.+...+.++.++.. ++.+++..+.. +.+++++++|+
T Consensus 125 ~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (229)
T 2y7i_A 125 RYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKD 198 (229)
T ss_dssp HHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTT
T ss_pred HHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCC
Confidence 888753 34456778899999999999998 9999999999999888776 68877655420 24789999999
Q ss_pred CC-ChHHHHHHHHhhhhcCchHHHHHHhcC
Q 047109 727 SP-LVHDISRAIAKLREEGTLRKIEIEWFN 755 (808)
Q Consensus 727 sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~ 755 (808)
+| +.+.+|++|.+++++|.++++.+||+.
T Consensus 199 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 199 NDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 98 999999999999999999999999985
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.81 E-value=2.2e-19 Score=180.60 Aligned_cols=222 Identities=18% Similarity=0.294 Sum_probs=181.4
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK 492 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 492 (808)
+++|+|++.. .++||.+.+. + ++..|+++|+++.+++++|+++++ ... +|.+++..|.+|+
T Consensus 3 ~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g~ 63 (239)
T 1lst_A 3 PQTVRIGTDT-TYAPFSSKDA----K---GEFIGFDIDLGNEMCKRMQVKCTW--VAS---------DFDALIPSLKAKK 63 (239)
T ss_dssp CSEEEEEECS-CBTTTBEECT----T---CCEESHHHHHHHHHHHHHTCEEEE--EEC---------CGGGHHHHHHTTS
T ss_pred cceEEEEECC-CcCCeeEECC----C---CCEeeEHHHHHHHHHHHHCCeEEE--EeC---------CHHHHHHHHhCCC
Confidence 5789999954 7999998532 2 789999999999999999986555 444 6899999999999
Q ss_pred ccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCC
Q 047109 493 FDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQG 572 (808)
Q Consensus 493 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 572 (808)
+|+++++++.+++|.+.++||.||.....++++++..+..
T Consensus 64 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~~---------------------------------------- 103 (239)
T 1lst_A 64 IDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQ---------------------------------------- 103 (239)
T ss_dssp CSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCCC----------------------------------------
T ss_pred CCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCCC----------------------------------------
Confidence 9999888889999999999999999999999998775320
Q ss_pred CCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHh
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGA 652 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~ 652 (808)
-+++++ .++++++..|+....+
T Consensus 104 -------------------------------------------------------~~~~dL---~g~~v~~~~g~~~~~~ 125 (239)
T 1lst_A 104 -------------------------------------------------------PTLESL---KGKHVGVLQGSTQEAY 125 (239)
T ss_dssp -------------------------------------------------------SSHHHH---TTCEEEEETTSHHHHH
T ss_pred -------------------------------------------------------CCHHHh---CCCEEEEEcCccHHHH
Confidence 034555 8999999999998888
Q ss_pred hhccC-CCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHH-HHhcC-CCceEEeccccccc-----cceEEEEe
Q 047109 653 LSNLN-FKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKA-FLAKY-STDYTMIAPNYTTT-----SGFGFVFQ 724 (808)
Q Consensus 653 l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~~-----~~~~~~~~ 724 (808)
+++.. .+..++..+++..+++++|.+|+ +|+++.+...+.+ +..+. ..++.+++..+. . .+++++++
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 200 (239)
T 1lst_A 126 ANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVK-DKKYFGDGTGVGLR 200 (239)
T ss_dssp HHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBC-CHHHHCSSBCCEEC
T ss_pred HHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccc-cccccCcceEEEEe
Confidence 86532 12346778899999999999998 9999999887754 44443 335777765544 3 36899999
Q ss_pred CCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 725 KGSP-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 725 k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
|++| +.+.+|++|.+++++|.++++.+||+..
T Consensus 201 k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 201 KDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 9998 9999999999999999999999999975
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.79 E-value=8.6e-19 Score=179.96 Aligned_cols=222 Identities=16% Similarity=0.263 Sum_probs=181.9
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
+.++|+|++.. .++||.+.+.+. +. ++..|+++|+++++++++|++++++ .. +|.+++..|.+|
T Consensus 19 ~~~~l~v~~~~-~~pP~~~~~~~~-~~---g~~~G~~~dl~~~i~~~~g~~v~~~--~~---------~~~~~~~~l~~G 82 (271)
T 2iee_A 19 DKGKIVVATSG-TLYPTSYHDTDS-GS---DKLTGYEVEVVREAAKRLGLKVEFK--EM---------GIDGMLTAVNSG 82 (271)
T ss_dssp HHTEEEEEECS-CBTTTBEEETTT-TC---CEEECHHHHHHHHHHHHTTCEEEEE--EC---------CSTTHHHHHHHT
T ss_pred cCCeEEEEECC-CCCCeeEeCCCC-CC---CCceeeHHHHHHHHHHHcCCeEEEE--EC---------CHHHHHHHHHCC
Confidence 56899999975 789999864321 22 5789999999999999999865554 44 589999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|+++++++.+++|.+.++||.||.....++++++..+..
T Consensus 83 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~--------------------------------------- 123 (271)
T 2iee_A 83 QVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG--------------------------------------- 123 (271)
T ss_dssp SSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGG---------------------------------------
T ss_pred CcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCC---------------------------------------
Confidence 99999888889999999999999999999999998764210
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
+-+++++ ++++||+..|+....
T Consensus 124 -------------------------------------------------------i~~~~dL---~g~~i~v~~g~~~~~ 145 (271)
T 2iee_A 124 -------------------------------------------------------IKTLKDL---KGKKAAGAATTVYME 145 (271)
T ss_dssp -------------------------------------------------------CSSGGGG---TTCEEESCTTSHHHH
T ss_pred -------------------------------------------------------CCCHHHh---CCCEEEEeCCccHHH
Confidence 0045555 899999999999998
Q ss_pred hhhccCCCcccccccCCHHHH--HHHHhcCCCCCceEEEEechhhHHHHHh-cC-CCceEEe-ccccccccceEEEEeCC
Q 047109 652 ALSNLNFKDSRLKKYNSAEEF--ANALSKGSKNGGISAIIDEIPYIKAFLA-KY-STDYTMI-APNYTTTSGFGFVFQKG 726 (808)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~l~~~-~~~~~~~~~~~~~~~k~ 726 (808)
++++.+. ++..+++..++ +++|.+|+ +| ++.+...+.++.. +. ..++.++ +..+. ..+++++++|+
T Consensus 146 ~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ 216 (271)
T 2iee_A 146 VARKYGA---KEVIYDNATNEQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYM-PNKQALVMKKS 216 (271)
T ss_dssp HHHHTTC---EEEECSSCCHHHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEE-EEEECCEEETT
T ss_pred HHHHcCC---ceEEeCChhhHHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCcc-cceEEEEEcCC
Confidence 8876543 67788888888 99999999 99 7777666665555 43 3367777 66667 88899999999
Q ss_pred CC-ChHHHHHHHHhhhhcCchHHHHHHhcC
Q 047109 727 SP-LVHDISRAIAKLREEGTLRKIEIEWFN 755 (808)
Q Consensus 727 sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~ 755 (808)
+| +.+.||++|.+++++|.++++.+||+.
T Consensus 217 ~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 217 NAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 98 999999999999999999999999998
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.79 E-value=6.1e-19 Score=175.79 Aligned_cols=221 Identities=19% Similarity=0.308 Sum_probs=180.2
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK 492 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 492 (808)
.++|+|++. +++||.+. . + ++..|+++|+++.+++++|++++++..+ +|.+++..|.+|+
T Consensus 2 ~~~l~v~~~--~~~P~~~~-~----~---g~~~G~~~dl~~~~~~~~g~~~~~~~~~----------~~~~~~~~l~~g~ 61 (228)
T 2pyy_A 2 QQPLLVATR--VIPPFVLS-N----K---GELSGFSIDLWRSIATQIGIESKLIEYS----------SVPELISAIKDNK 61 (228)
T ss_dssp --CEEEEEC--CBTTTBBC-C----------CBSHHHHHHHHHHHHHTCCEEEEECS----------SHHHHHHHHHTTS
T ss_pred CceEEEEec--CCCCeEEe-c----C---CceEEEeHHHHHHHHHHhCCcEEEEEcC----------CHHHHHHHHHCCC
Confidence 368999988 68999874 2 2 6789999999999999999876665543 5899999999999
Q ss_pred ccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCC
Q 047109 493 FDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQG 572 (808)
Q Consensus 493 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 572 (808)
+|++++++..+++|.+.+.|+.|+.....++++++.++..
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~---------------------------------------- 101 (228)
T 2pyy_A 62 VNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGT---------------------------------------- 101 (228)
T ss_dssp CSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC---------------------------------------------
T ss_pred cCEEEeccccCHHHHccceecccchhcceEEEEECCcccc----------------------------------------
Confidence 9999888888999999999999999999999998764210
Q ss_pred CCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHh
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGA 652 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~ 652 (808)
..+-+++++ .++++++..++....+
T Consensus 102 ----------------------------------------------------~~~~~~~dL---~g~~i~~~~g~~~~~~ 126 (228)
T 2pyy_A 102 ----------------------------------------------------GDIRSIDDL---PGKVVATTAGSTAATY 126 (228)
T ss_dssp ----------------------------------------------------CCCCSGGGC---TTCEEEEETTSHHHHH
T ss_pred ----------------------------------------------------CCcCCHHHc---CCCeEEEEcCcHHHHH
Confidence 000134555 8999999999998888
Q ss_pred hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEeccccccccceEEEEeCCCCChH
Q 047109 653 LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAPNYTTTSGFGFVFQKGSPLVH 731 (808)
Q Consensus 653 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k~sp~~~ 731 (808)
+++.+ .++..+.+..+++++|.+|+ +|+++.+...+.++.++. ...+.+++..+. ..+++++++|++++.+
T Consensus 127 l~~~~---~~~~~~~~~~~~~~~l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 198 (228)
T 2pyy_A 127 LREHH---ISVLEVPKIEEAYKALQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILR-EESYGIILPNNSPYRK 198 (228)
T ss_dssp HHHTT---CEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEE-EEEECCEECTTCTTHH
T ss_pred HHHcC---CceEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEeccccc-ceeEEEEEeCChHHHH
Confidence 87643 35677889999999999998 999999999888887765 236777776666 7789999999989999
Q ss_pred HHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 732 DISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 732 ~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
.+|++|.+++++|.++++.+||+..
T Consensus 199 ~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 199 PINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999975
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.78 E-value=1.2e-18 Score=177.26 Aligned_cols=223 Identities=18% Similarity=0.180 Sum_probs=183.3
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++. .++||.+.+. + ++..|+++|+++.+++++|++ ++++... +|.+++..+.+|
T Consensus 11 ~~~~l~v~~~--~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~-~~~~~~~---------~~~~~~~~l~~g 71 (257)
T 2q88_A 11 EQGFARIAIA--NEPPFTAVGA----D---GKVSGAAPDVAREIFKRLGVA-DVVASIS---------EYGAMIPGLQAG 71 (257)
T ss_dssp HHTEEEEEEC--CCTTTCEECT----T---CCEESHHHHHHHHHHHHTTCC-EEEEEEC---------CGGGHHHHHHTT
T ss_pred cCCeEEEEcC--CCCCeeEECC----C---CCcccccHHHHHHHHHHcCCC-eeeEEeC---------CHHHHHHHHHCC
Confidence 4578999997 7899998532 2 789999999999999999986 2444444 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|++++++..+++|.+.++||.||.....++++++..+..
T Consensus 72 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 112 (257)
T 2q88_A 72 RHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG--------------------------------------- 112 (257)
T ss_dssp SCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC---------------------------------------
T ss_pred CcCEEEecccCCHHHHhccccccchhcCceEEEEECCCccC---------------------------------------
Confidence 99999878889999999999999999999999998875310
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhcc---CCceeeecCCc
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLAS---RDNIGSQLGSF 648 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~---~~~i~~~~~s~ 648 (808)
+-+++++ . ++++|+..|+.
T Consensus 113 -------------------------------------------------------i~~~~dL---~~~~g~~i~~~~g~~ 134 (257)
T 2q88_A 113 -------------------------------------------------------LKSYKDI---ADNPDAKIGAPGGGT 134 (257)
T ss_dssp -------------------------------------------------------CCBHHHH---HHCTTCCEEECTTSH
T ss_pred -------------------------------------------------------CCCHHHH---hccCCceEEEECCcc
Confidence 0044555 6 89999999999
Q ss_pred HHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-CceEEeccccc--cccceEEEEeC
Q 047109 649 VPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-TDYTMIAPNYT--TTSGFGFVFQK 725 (808)
Q Consensus 649 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~~~~k 725 (808)
...++++.+.+..++..+++..+++++|.+|+ +|+++.+...+.+++++.. ..+..... +. ...+++++++|
T Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k 209 (257)
T 2q88_A 135 EEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRK 209 (257)
T ss_dssp HHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECG
T ss_pred cHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcC
Confidence 99999876666667888999999999999999 9999999999988877653 34555443 22 02457789999
Q ss_pred CCC-ChHHHHHHHHhhhhcCchHHHHHHhcC
Q 047109 726 GSP-LVHDISRAIAKLREEGTLRKIEIEWFN 755 (808)
Q Consensus 726 ~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~ 755 (808)
+++ +.+.+|++|.+++++|.++++.+||..
T Consensus 210 ~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~~ 240 (257)
T 2q88_A 210 GDEALRDAFDVELAKLKESGEFAKIIEPYGF 240 (257)
T ss_dssp GGHHHHHHHHHHHHHHHHHTHHHHHHGGGTC
T ss_pred CCHHHHHHHHHHHHHHHhCCcHHHHHHHhCC
Confidence 987 999999999999999999999999944
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.77 E-value=6.2e-18 Score=173.18 Aligned_cols=218 Identities=19% Similarity=0.267 Sum_probs=186.2
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++++|++.. .++||.+.+. + +++.|+++|+++.+++++|+++++ ... +|.+++..+.+|
T Consensus 29 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 89 (268)
T 3qax_A 29 RNRIWIVGTNA-TYPPFEYVDA----Q---GEVVGFDIDLAKAISEKLGKQLEV--REF---------AFDALILNLKKH 89 (268)
T ss_dssp --CEEEEEECS-CBTTTBEECT----T---SCEESHHHHHHHHHHHHHTCEEEE--EEC---------CGGGHHHHHHHT
T ss_pred cCCeEEEEECC-CCCCceEECC----C---CCEEEEEHHHHHHHHHHhCCeEEE--Eec---------CHHHHHHHHhCC
Confidence 45789999876 6899987532 2 789999999999999999975554 444 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccce--eccEEEEEecCCCC-ccceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYT--DMGIGMIVPTDRNN-NMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPIND 568 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~--~~~~~~lv~~~~~~-~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 568 (808)
++|++++++..+++|.+.++| .||. .....+++++.+.. .
T Consensus 90 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~------------------------------------ 132 (268)
T 3qax_A 90 RIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETP------------------------------------ 132 (268)
T ss_dssp SSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSC------------------------------------
T ss_pred CccEEeecCccCHhHhcceee-ecceecccceEEEEECCCCCCC------------------------------------
Confidence 999998889999999999999 9999 89999999876321 1
Q ss_pred CCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCc
Q 047109 569 EFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSF 648 (808)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~ 648 (808)
+++++ +++++++..|+.
T Consensus 133 ------------------------------------------------------------~~~dL---~g~~i~~~~g~~ 149 (268)
T 3qax_A 133 ------------------------------------------------------------VLPLT---QYSSVAVQTGTY 149 (268)
T ss_dssp ------------------------------------------------------------CCCGG---GSSCEEEETTSH
T ss_pred ------------------------------------------------------------CHHHh---CCCEEEEecCcH
Confidence 45555 899999999999
Q ss_pred HHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccc----eEEEEe
Q 047109 649 VPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSG----FGFVFQ 724 (808)
Q Consensus 649 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~ 724 (808)
...++.+ .+..++..+++.++++++|.+|+ +|+++.+...+.++.++.. .+.+++..+. ..+ ++++++
T Consensus 150 ~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 221 (268)
T 3qax_A 150 QEHYLLS--QPGICVRSFDSTLEVIMEVRYGK----SPVAVLEPSVGRVVLKDFP-NLVATRLELP-PECWVLGCGLGVA 221 (268)
T ss_dssp HHHHHHT--STTCCEEEESCHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCT-TEEEEEEECC-GGGCBCCEEEEEC
T ss_pred HHHHHHh--CCCceEEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCC-CcEEecCccC-cccccccEEEEEe
Confidence 9988876 44567788999999999999998 9999999999999888776 4777777776 777 999999
Q ss_pred CCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 725 KGSP-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 725 k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
|++| +.+.+|++|.+++++|.++++.+||+..
T Consensus 222 k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 222 KDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 9998 9999999999999999999999999976
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.77 E-value=1.1e-17 Score=171.80 Aligned_cols=220 Identities=19% Similarity=0.322 Sum_probs=185.1
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
+.++|+|++.. .++||.+. + + +++.|+++|+++.+++++|+++++ ... .|.+++..|.+|
T Consensus 40 ~~~~l~v~~~~-~~~P~~~~-~----~---g~~~G~~~dl~~~i~~~~g~~v~~--~~~---------~~~~~~~~l~~G 99 (272)
T 2pvu_A 40 TKKKVVVGTDA-AFAPFEYM-Q----K---GKIVGFDVDLLDAVMKAAGLDYEL--KNI---------GWDPLFASLQSK 99 (272)
T ss_dssp CCCCEEEEECC-CBTTTBEE-E----T---TEEESHHHHHHHHHHHHHTCCEEE--EEC---------CHHHHHHHHHHT
T ss_pred cCCeEEEEECC-CCCCeEEe-c----C---CeEEEEHHHHHHHHHHHhCCceEE--EEC---------CHHHHHHHHhCC
Confidence 56889999975 68999885 2 2 788999999999999999986554 444 689999999999
Q ss_pred cccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 047109 492 KFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQ 571 (808)
Q Consensus 492 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 571 (808)
++|++++++..+++|.+.+.|+.|+.....++++++..+..
T Consensus 100 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~i~--------------------------------------- 140 (272)
T 2pvu_A 100 EVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVK--------------------------------------- 140 (272)
T ss_dssp SSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCCCC---------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCCCC---------------------------------------
Confidence 99999888888999999999999999999999998764321
Q ss_pred CCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHH
Q 047109 572 GSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPG 651 (808)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~ 651 (808)
+++++ +++++++..|+....
T Consensus 141 ---------------------------------------------------------~~~dL---~g~~i~~~~g~~~~~ 160 (272)
T 2pvu_A 141 ---------------------------------------------------------NALDL---KGKTIGVQNATTGQE 160 (272)
T ss_dssp ---------------------------------------------------------SGGGG---TTSCEEEETTSHHHH
T ss_pred ---------------------------------------------------------CHHHh---CCCeEEEEcCchHHH
Confidence 45555 899999999999888
Q ss_pred hhhcc-CCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC-CceEEecccc--ccccceEEEEeCCC
Q 047109 652 ALSNL-NFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS-TDYTMIAPNY--TTTSGFGFVFQKGS 727 (808)
Q Consensus 652 ~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~~~k~s 727 (808)
++.+. + ...++..+.+..+++++|.+|+ +|+++.+...+.++.++.. .++.+++... . ..+++++++|+.
T Consensus 161 ~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~ 234 (272)
T 2pvu_A 161 AAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFA-SEYYGMIFPKNS 234 (272)
T ss_dssp HHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSC-CEEECCEEETTC
T ss_pred HHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCceEEeccccccC-CceEEEEEeCCH
Confidence 88653 2 2456778899999999999998 9999999999988887663 2478777653 5 678899999993
Q ss_pred CChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 728 PLVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 728 p~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
.+.+.+|++|.+++++|.++++.+||+..
T Consensus 235 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 235 ELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp TTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 39999999999999999999999999976
No 68
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.77 E-value=5.3e-18 Score=175.75 Aligned_cols=225 Identities=17% Similarity=0.251 Sum_probs=186.7
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHH----CCC-ceeEEEEecCCCCCCCCCCHHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDS----LTF-EVPYEFIPFEDPNGRMPGSYNDLID 486 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~----l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (808)
..++|+|++.. .++||.+.+. + +++.|+++|+++.+++. +|. .+++++.+. +|.+++.
T Consensus 15 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---------~~~~~~~ 77 (287)
T 2vha_A 15 KNGVIVVGHRE-SSVPFSYYDN----Q---QKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---------TSQNRIP 77 (287)
T ss_dssp HHTEEEEEECS-EETTTEEECS----S---SCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---------CTTTHHH
T ss_pred hCCeEEEEEcC-CCCCceEECC----C---CCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---------CHHHHHH
Confidence 56789999975 6899998532 2 77899999999999976 662 135566665 6889999
Q ss_pred HHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeeccc
Q 047109 487 QVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPI 566 (808)
Q Consensus 487 ~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 566 (808)
.|.+|++|+++++++.+++|.+.++||.||.....++++++..+..
T Consensus 78 ~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~i~---------------------------------- 123 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIK---------------------------------- 123 (287)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSSCC----------------------------------
T ss_pred HHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCCCC----------------------------------
Confidence 9999999999888889999999999999999999999998764321
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecC
Q 047109 567 NDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLG 646 (808)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~ 646 (808)
+++++ .++++++..|
T Consensus 124 --------------------------------------------------------------sl~dL---~g~~v~~~~g 138 (287)
T 2vha_A 124 --------------------------------------------------------------DFADL---KGKAVVVTSG 138 (287)
T ss_dssp --------------------------------------------------------------SGGGG---TTCEEEEETT
T ss_pred --------------------------------------------------------------CHHHc---CCCEEEEeCC
Confidence 45555 7899999999
Q ss_pred CcHHHhhhccCC---CcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC--CCceEEeccccccccceEE
Q 047109 647 SFVPGALSNLNF---KDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY--STDYTMIAPNYTTTSGFGF 721 (808)
Q Consensus 647 s~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ 721 (808)
+....++.+... ...+++.+.+..+++++|.+|+ +|+++.+...+.++.++. ...+.+++..+. ..++++
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 213 (287)
T 2vha_A 139 TTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGKPQS-QEAYGC 213 (287)
T ss_dssp SHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESCCSC-EEEEEE
T ss_pred CcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCCccc-cCceEE
Confidence 998887754321 2346778899999999999998 999999999888888764 236888887777 889999
Q ss_pred EEeCCCC-ChHHHHHHHHhhhhcCchHHHHHHhcCCC
Q 047109 722 VFQKGSP-LVHDISRAIAKLREEGTLRKIEIEWFNDQ 757 (808)
Q Consensus 722 ~~~k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~~~~ 757 (808)
+++|++| +.+.+|++|.+++++|.++++.+||+...
T Consensus 214 ~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 250 (287)
T 2vha_A 214 MLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNP 250 (287)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCC
Confidence 9999988 99999999999999999999999999864
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.75 E-value=9.8e-18 Score=174.14 Aligned_cols=220 Identities=21% Similarity=0.244 Sum_probs=186.0
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSL---TFEVPYEFIPFEDPNGRMPGSYNDLIDQV 488 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 488 (808)
..++|+|++.. .++||.+.+. + ++..|+++|+++.+++++ |++++++ .. +|.+++..+
T Consensus 42 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~~~~g~~~~~~--~~---------~~~~~~~~l 102 (292)
T 1xt8_A 42 QNGVVRIGVFG-DKPPFGYVDE----K---GNNQGYDIALAKRIAKELFGDENKVQFV--LV---------EAANRVEFL 102 (292)
T ss_dssp HHSSEEEEECS-EETTTEEECT----T---SCEESHHHHHHHHHHHHHHSCTTCEEEE--EC---------CGGGHHHHH
T ss_pred hCCeEEEEECC-CCCCeeEECC----C---CCEeeEhHHHHHHHHHHhccCCceEEEE--Ec---------CHHHHHHHH
Confidence 35689999875 6899988532 2 778999999999999999 9866554 44 579999999
Q ss_pred HcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 047109 489 YFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPIND 568 (808)
Q Consensus 489 ~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 568 (808)
.+|++|++++++..+++|.+.+.|+.||.....++++++.....
T Consensus 103 ~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~i~------------------------------------ 146 (292)
T 1xt8_A 103 KSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNIT------------------------------------ 146 (292)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCCCC------------------------------------
T ss_pred hCCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCCCC------------------------------------
Confidence 99999999877888999999999999999999999998764321
Q ss_pred CCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCc
Q 047109 569 EFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSF 648 (808)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~ 648 (808)
+++++ +++++++..|+.
T Consensus 147 ------------------------------------------------------------~~~dL---~g~~i~~~~g~~ 163 (292)
T 1xt8_A 147 ------------------------------------------------------------SVEDL---KDKTLLLNKGTT 163 (292)
T ss_dssp ------------------------------------------------------------SSGGG---TTSEEEEETTSH
T ss_pred ------------------------------------------------------------CHHHh---CCCEEEEeCCCc
Confidence 45555 799999999999
Q ss_pred HHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccce-EEEEeCCC
Q 047109 649 VPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGF-GFVFQKGS 727 (808)
Q Consensus 649 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~k~s 727 (808)
...++++. .+..++..+.+..+++++|.+|+ +|+++.+...+.++.++.. ++.+++..+. ..++ +++++|++
T Consensus 164 ~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~----vDa~~~~~~~~~~~~~~~~-~l~~~~~~~~-~~~~~~~~~~k~~ 236 (292)
T 1xt8_A 164 ADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHP-DFKMGIKELG-NKDVIAPAVKKGD 236 (292)
T ss_dssp HHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCT-TEEEEEEEEE-EEEEECCEEETTC
T ss_pred HHHHHHHh-CCCceEEEcCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCC-CeEEcccccc-cCceeEEEEeCCC
Confidence 88888653 23456778899999999999998 9999999999998888766 5777776666 7777 99999999
Q ss_pred C-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 728 P-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 728 p-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
| +.+.+|++|.+++++|.++++.+||+..
T Consensus 237 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 237 KELKEFIDNLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 8 9999999999999999999999999974
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.75 E-value=2e-17 Score=170.74 Aligned_cols=220 Identities=18% Similarity=0.284 Sum_probs=182.9
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
..++|+|++.. .|+||.+.+. + ++..|+++|+++.+++++|++++ +... +|.+++..|.+|
T Consensus 55 ~~~~l~v~~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~G~~v~--~~~~---------~~~~~~~~l~~G 115 (283)
T 2yln_A 55 NKGTVTVGTEG-TYAPFTYHDK----D---GKLTGYDVEVTRAVAEKLGVKVE--FKET---------QWDSMMAGLKAG 115 (283)
T ss_dssp HTCEEEEEECS-EETTTEEECT----T---SCEESHHHHHHHHHHHHHTCEEE--EEEC---------CGGGHHHHHHHT
T ss_pred cCCeEEEEECC-CCCCeeEECC----C---CCEeeehHHHHHHHHHHcCCceE--EEEC---------CHHHHHHHHHCC
Confidence 35789999975 5999998532 2 67899999999999999998554 4444 589999999999
Q ss_pred cccEEEeceee-eccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 492 KFDAVVGETTI-TANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 492 ~~Di~~~~~~~-t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
++|++++++.. +.+|.+.++|+.||......+++++..+..
T Consensus 116 ~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~i~-------------------------------------- 157 (283)
T 2yln_A 116 RFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIK-------------------------------------- 157 (283)
T ss_dssp SCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCSCC--------------------------------------
T ss_pred CcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCCCC--------------------------------------
Confidence 99999887887 899999999999999999999998764321
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+++++ +++++++..++...
T Consensus 158 ----------------------------------------------------------s~~dL---~G~~v~v~~g~~~~ 176 (283)
T 2yln_A 158 ----------------------------------------------------------SIADI---KGVKTAQSLTSNYG 176 (283)
T ss_dssp ----------------------------------------------------------SGGGC---TTSEEEECTTSHHH
T ss_pred ----------------------------------------------------------CHHHh---CCCEEEEecCchHH
Confidence 34555 89999999999998
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEec-cccccccceEEEEeCCCC
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIA-PNYTTTSGFGFVFQKGSP 728 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~k~sp 728 (808)
.++++.+ .++..+.+..+++++|.+|+ +|+++.+...+.++.++. ..++.+++ ..+....+++++++|++|
T Consensus 177 ~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~ 249 (283)
T 2yln_A 177 EKAKAAG---AQLVPVDGLAQSLTLIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGND 249 (283)
T ss_dssp HHHHHTT---CEEEECSSHHHHHHHHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCH
T ss_pred HHHHHcC---CeEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCH
Confidence 8887652 36778889999999999998 999999999988887765 33477776 443214578899999988
Q ss_pred -ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 -LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 -~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+.+.||++|.+++++|.++++.+||+..
T Consensus 250 ~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 250 EAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 9999999999999999999999999976
No 71
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.74 E-value=1.5e-17 Score=172.63 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=185.7
Q ss_pred CCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHHH
Q 047109 413 INKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSL---TFEVPYEFIPFEDPNGRMPGSYNDLIDQVY 489 (808)
Q Consensus 413 ~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (808)
.++|+|++.. .++||.+.+. + ++..|+++|+++.+++++ |+++++ ... .|.+++..|.
T Consensus 54 ~~~l~vg~~~-~~~P~~~~~~----~---g~~~G~~~dl~~~i~~~~~~~g~~v~~--~~~---------~~~~~~~~l~ 114 (291)
T 2yjp_A 54 KGVIRIGVFG-DKPPFGYVDA----N---GKNQGFDVEIAKDLAKDLLGSPDKVEF--VLT---------EAANRVEYVR 114 (291)
T ss_dssp HTCEEEEECS-EETTTEEECT----T---SCEESHHHHHHHHHHHHHHSCGGGEEE--EEC---------CGGGHHHHHH
T ss_pred CCeEEEEEcC-CCCCceEECC----C---CCEeehHHHHHHHHHHHhccCCceEEE--EEc---------cHHHHHHHHh
Confidence 4679999865 6899988532 2 789999999999999999 986555 444 5789999999
Q ss_pred cCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 047109 490 FQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDE 569 (808)
Q Consensus 490 ~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 569 (808)
+|++|++++++..+.+|.+.++|+.|+.....++++++.....
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~i~------------------------------------- 157 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPIT------------------------------------- 157 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSCCC-------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCCCC-------------------------------------
Confidence 9999999888888999999999999999999999998765321
Q ss_pred CCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcH
Q 047109 570 FQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFV 649 (808)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~ 649 (808)
+++++ +++++++..|+..
T Consensus 158 -----------------------------------------------------------sl~dL---~gk~v~~~~g~~~ 175 (291)
T 2yjp_A 158 -----------------------------------------------------------DMAQL---KDQTLLVNKGTTA 175 (291)
T ss_dssp -----------------------------------------------------------SGGGG---TTSEEEEETTSHH
T ss_pred -----------------------------------------------------------CHHHh---CCCEEEEecCCcH
Confidence 45555 8999999999998
Q ss_pred HHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccce-EEEEeCCCC
Q 047109 650 PGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGF-GFVFQKGSP 728 (808)
Q Consensus 650 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~k~sp 728 (808)
..++.+. .+..++..+++..+++++|.+|+ +|+++.+...+.++.++.. .+.+++..+. ..++ +++++|++|
T Consensus 176 ~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~k~~~ 248 (291)
T 2yjp_A 176 DAFFTKS-HPEVKLLKFDQNTETFDALKDGR----GVALAHDNALLWAWAKENP-NFEVAIGNLG-PAEFIAPAVQKGNA 248 (291)
T ss_dssp HHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCT-TEEEEECCSS-SCEEECCEEETTCH
T ss_pred HHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCC-CeEEcCCccc-CCcceEEEEeCCCH
Confidence 8888664 23456778889999999999998 9999999999988887765 5888877777 7788 999999998
Q ss_pred -ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 729 -LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 729 -~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
+.+.+|++|.++.++|.++++.+||+..
T Consensus 249 ~l~~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 249 DLLNWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhccc
Confidence 9999999999999999999999999874
No 72
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.74 E-value=2.5e-17 Score=168.78 Aligned_cols=224 Identities=23% Similarity=0.343 Sum_probs=183.1
Q ss_pred CCCeEEEEeecCCccceEEEe-eCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHc
Q 047109 412 KINKLRIGVPVNGHIEFVHVV-RDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYF 490 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (808)
..++++|++.. .++||.+.. .+ ++ +++.|+++|+++.+++++|+++++ .+. +|.+++..+.+
T Consensus 37 ~~~~l~v~~~~-~~~P~~~~~~~~--~~---g~~~G~~~dl~~~~~~~~g~~~~~--~~~---------~~~~~~~~l~~ 99 (269)
T 4i62_A 37 SKGKLVVALNP-DFAPFEYQKVVD--GK---NQIVGSDIELAKAIATELGVELEL--SPM---------SFDNVLASVQS 99 (269)
T ss_dssp HHTEEEEEECS-CBTTTBEEEEET--TE---EEEESHHHHHHHHHHHHHTCEEEE--EEC---------CHHHHHHHHHT
T ss_pred cCCeEEEEecC-CCCCceeecccC--CC---CcEeeecHHHHHHHHHHHCCceEE--EEc---------CHHHHHHHHhC
Confidence 34689999975 689998732 12 22 789999999999999999985555 444 68999999999
Q ss_pred CcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 047109 491 QKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEF 570 (808)
Q Consensus 491 g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 570 (808)
|++|++++++..+++|.+.+.|+.|+.....++++++.+...
T Consensus 100 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~-------------------------------------- 141 (269)
T 4i62_A 100 GKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAT-------------------------------------- 141 (269)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTT--------------------------------------
T ss_pred CCccEEecCCcCCHhHhhceecccchhhcceEEEEECCcccc--------------------------------------
Confidence 999999888999999999999999999999999998873211
Q ss_pred CCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHH
Q 047109 571 QGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVP 650 (808)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~ 650 (808)
+-+++++ +++++++..|+...
T Consensus 142 --------------------------------------------------------i~~~~dL---~g~~i~~~~g~~~~ 162 (269)
T 4i62_A 142 --------------------------------------------------------YQSVNDL---AQKKVGAQKGSIQE 162 (269)
T ss_dssp --------------------------------------------------------CSSGGGG---C-CEEEEETTSHHH
T ss_pred --------------------------------------------------------ccCHHHh---CCCeEEEecCchHH
Confidence 0045555 89999999999998
Q ss_pred HhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccc---cccccceEEEEeCCC
Q 047109 651 GALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPN---YTTTSGFGFVFQKGS 727 (808)
Q Consensus 651 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~k~s 727 (808)
.++.+. .+..++..+++.++++++|.+|+ +|+++.+...+.++.++.. .+.+.... .. ..+++++++|++
T Consensus 163 ~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (269)
T 4i62_A 163 TMAKDL-LQNSSLVSLPKNGNLITDLKSGQ----VDAVIFEEPVAKGFVENNP-DLAIADLNFEKEQ-DDSYAVAMKKDS 235 (269)
T ss_dssp HHHHHH-CTTSEEEEESCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCT-TEEECSCCCCC-C-CCEECCEEESSC
T ss_pred HHHHHh-CCCCcEEecCCHHHHHHHHHcCC----CCEEEeChHHHHHHHHhCC-CCeEEeeccCCCc-ccceEEEEeCCC
Confidence 888663 34567888999999999999998 9999999999988888765 45444332 33 567899999999
Q ss_pred C-ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 728 P-LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 728 p-~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
| +.+.+|++|.+++++|.++++.+||+..
T Consensus 236 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 236 KELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 8 9999999999999999999999999975
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.61 E-value=1.7e-15 Score=153.95 Aligned_cols=215 Identities=18% Similarity=0.318 Sum_probs=173.4
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHH
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSL---TFEVPYEFIPFEDPNGRMPGSYNDLIDQV 488 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 488 (808)
..++|+|++.. .++||.+.+.+ + ++..|+++|+++.+++++ |.++++ ... +|.+++..|
T Consensus 36 ~~~~l~vg~~~-~~~p~~~~~~~---~---g~~~G~~~~l~~~~~~~~~~pg~~v~~--~~~---------~~~~~~~~l 97 (259)
T 2v25_A 36 SKGQLIVGVKN-DVPHYALLDQA---T---GEIKGFEVDVAKLLAKSILGDDKKIKL--VAV---------NAKTRGPLL 97 (259)
T ss_dssp HHTCEEEEECS-EETTTEEEETT---T---TEEESHHHHHHHHHHHHHHSCTTSEEE--EEC---------CTTTHHHHH
T ss_pred hCCeEEEEECC-CCCCeEEEECC---C---CeEEEeeHHHHHHHHHHhcCCCcceEE--EEc---------CHHHHHHHH
Confidence 34689999875 68999875321 2 789999999999999999 886555 443 578999999
Q ss_pred HcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 047109 489 YFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPIND 568 (808)
Q Consensus 489 ~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 568 (808)
.+|++|++++++..+++|.+.++|+.|+.....++++++..+..
T Consensus 98 ~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~------------------------------------ 141 (259)
T 2v25_A 98 DNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYK------------------------------------ 141 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGCCC------------------------------------
T ss_pred hCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCCCC------------------------------------
Confidence 99999999887888889999999999999999999998764321
Q ss_pred CCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCc
Q 047109 569 EFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSF 648 (808)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~ 648 (808)
+++++ .++++++..++.
T Consensus 142 ------------------------------------------------------------~~~dL---~g~~i~~~~g~~ 158 (259)
T 2v25_A 142 ------------------------------------------------------------SLADM---KGANIGVAQAAT 158 (259)
T ss_dssp ------------------------------------------------------------SGGGC---TTCEEEEETTCS
T ss_pred ------------------------------------------------------------CHHHh---CCCEEEEecCCc
Confidence 34555 788999999998
Q ss_pred HHHhhhcc----CCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccccceEEEEe
Q 047109 649 VPGALSNL----NFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTSGFGFVFQ 724 (808)
Q Consensus 649 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 724 (808)
....+++. +. ..++..+.+..+.++++..|+ +|+++.+...+.++.++.. . +++..+. ..+++++++
T Consensus 159 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~ 229 (259)
T 2v25_A 159 TKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDAKR----VDAFSVDKSILLGYVDDKS-E--ILPDSFE-PQSYGIVTK 229 (259)
T ss_dssp HHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHTTTCCTTE-E--ECSCCCS-EEEECCEEE
T ss_pred hHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHcCC----CcEEEecHHHHHHHHHhCC-C--ccccccc-cceeEEEEc
Confidence 87776432 22 225667889999999999998 9999999887777665544 2 4555666 778899999
Q ss_pred CCCC-ChHHHHHHHHhhhhcCchHHHHHHhc
Q 047109 725 KGSP-LVHDISRAIAKLREEGTLRKIEIEWF 754 (808)
Q Consensus 725 k~sp-~~~~~~~~i~~l~e~G~~~~~~~~~~ 754 (808)
|++| +.+.+|++|.+++++ ++++.+||.
T Consensus 230 k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 230 KDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp TTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 9997 999999999999999 899999984
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.85 E-value=5.8e-09 Score=100.24 Aligned_cols=169 Identities=9% Similarity=0.053 Sum_probs=128.9
Q ss_pred ceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecc------ccceeecccc
Q 047109 442 LIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITAN------RSLYVDFTLP 515 (808)
Q Consensus 442 ~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~------r~~~~dfs~p 515 (808)
.+++|+.--|.+.+. |+++++..+. .|++.+..|++|++|+++.+++.+++ |...+||+.|
T Consensus 28 ~~yeGlatgl~~~f~---gi~~~i~~mr----------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~ 94 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---GIPFYYAHMR----------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPH 94 (231)
T ss_dssp HHHHHHHHHHHHTTT---TSCEEEEECS----------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTT
T ss_pred hhhhHHHHHHHHHhc---CCcEEEEEcc----------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCC
Confidence 788899988888884 7766666653 58999999999999999999999999 9999999999
Q ss_pred ceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcCcc
Q 047109 516 YTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQRE 595 (808)
Q Consensus 516 ~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 595 (808)
|+.....++++++...
T Consensus 95 yYv~~h~li~~~~~~~---------------------------------------------------------------- 110 (231)
T 2ozz_A 95 TYVGEHQLICRKGESG---------------------------------------------------------------- 110 (231)
T ss_dssp SSSCCEEEEEETTCGG----------------------------------------------------------------
T ss_pred ccccCeEEEEeCCCcc----------------------------------------------------------------
Confidence 9988888888776421
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHhhhccCCCccccccc-CCHHHHHH
Q 047109 596 KLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGALSNLNFKDSRLKKY-NSAEEFAN 674 (808)
Q Consensus 596 ~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 674 (808)
.-++||+..||..+..+.+.......+..+ .+..+++.
T Consensus 111 -----------------------------------------~ikrVGvd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~ 149 (231)
T 2ozz_A 111 -----------------------------------------NVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQ 149 (231)
T ss_dssp -----------------------------------------GCCEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHH
T ss_pred -----------------------------------------ccEEEEecCCChhHHHHHhhhcCCCeEEEEECCHHHHHH
Confidence 126899999999998886644445566678 78899999
Q ss_pred HHhcCCCCCceEEEEe--chhhHHHHHhcCCCceEE--ecc---ccccccceEEEEeCCCC-ChHHHHHHHH
Q 047109 675 ALSKGSKNGGISAIID--EIPYIKAFLAKYSTDYTM--IAP---NYTTTSGFGFVFQKGSP-LVHDISRAIA 738 (808)
Q Consensus 675 ~l~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~~k~sp-~~~~~~~~i~ 738 (808)
.|.+|+ +||.+. |..... ... ++.. ++. ... .....++++||++ +++.+|+.|.
T Consensus 150 ~L~~G~----IDA~Iwn~d~~~a~----~~~-~l~~~~l~~~~~~~~-~~eavI~v~k~n~~L~~~ln~~I~ 211 (231)
T 2ozz_A 150 RIVKGD----VDAVIWNVVAENEL----TML-GLEATPLTDDPRFLQ-ATEAVVLTRVDDYPMQQLLRAVVD 211 (231)
T ss_dssp HHHHTS----CCEEEEEC-CHHHH----HHT-TEEEEECCSCHHHHH-TTCEEEEEETTCHHHHHHHHHHCC
T ss_pred HHHcCC----ccEEEEcCcchhhh----cCC-Ccceecccccccccc-CCceEEEEECCCHHHHHHHHHHhH
Confidence 999998 999999 666544 111 2222 222 233 4556699999975 8888877653
No 75
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.30 E-value=2.5e-06 Score=88.12 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=136.3
Q ss_pred CeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcc
Q 047109 414 NKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKF 493 (808)
Q Consensus 414 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 493 (808)
++|++|+.. .++|+... .. ..++++.+++++|.++++ ... .+|++++..|.+|++
T Consensus 4 ~~l~iG~~p-~~~p~~~~----------~~----~~~l~~~l~k~lG~~ve~--~~~--------~~~~~~i~al~~G~v 58 (310)
T 3n5l_A 4 PVINFGIIS-TESSQNLK----------SI----WEPFLKDMSQQTGYQVKA--FFA--------PDYAGIIQGMRFDKV 58 (310)
T ss_dssp CEEEEEECC-SSCHHHHH----------HH----HHHHHHHHHHHHSSEEEE--ECC--------SSHHHHHHHHHTTSC
T ss_pred cEEEEEEec-CCCHHHHH----------HH----HHHHHHHHHHHhCCCEEE--EeC--------CCHHHHHHHHHcCCC
Confidence 689999986 46665541 12 248999999999985544 432 178999999999999
Q ss_pred cEEEec-eeeecc--ccceeeccc-------cceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhheeee
Q 047109 494 DAVVGE-TTITAN--RSLYVDFTL-------PYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIE 563 (808)
Q Consensus 494 Di~~~~-~~~t~~--r~~~~dfs~-------p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~ 563 (808)
|+++.+ ...... |.....|+. |++ ..++++++..+..
T Consensus 59 Di~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~--~~~lvv~~ds~i~------------------------------- 105 (310)
T 3n5l_A 59 DIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGY--WSLLIANKDSKID------------------------------- 105 (310)
T ss_dssp SEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEE--EEEEEEETTCSCC-------------------------------
T ss_pred CEEEECcHHHHHHHHhcCCeEEEEEeccCCCcce--EEEEEEECCCCCC-------------------------------
Confidence 999754 333222 323334433 332 2467777654321
Q ss_pred cccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhh-hccCCcee
Q 047109 564 RPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIK-LASRDNIG 642 (808)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~-~~~~~~i~ 642 (808)
+++++. ..++++++
T Consensus 106 -----------------------------------------------------------------sl~DL~~~~kgk~ia 120 (310)
T 3n5l_A 106 -----------------------------------------------------------------SLEDMLANAKSLTFG 120 (310)
T ss_dssp -----------------------------------------------------------------SHHHHHHTGGGCEEE
T ss_pred -----------------------------------------------------------------CHHHHhhhcCCCEEE
Confidence 233331 11567887
Q ss_pred ee-cCCcHH----H-hh-hccCCCc---ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC---CCceEEe
Q 047109 643 SQ-LGSFVP----G-AL-SNLNFKD---SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY---STDYTMI 709 (808)
Q Consensus 643 ~~-~~s~~~----~-~l-~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~ 709 (808)
+. .+++.. . ++ ++.+... -+.+...+..+.+..|..|+ +|+.+.+...+..+.+.. ..+++++
T Consensus 121 ~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~~~~~~~lrvl 196 (310)
T 3n5l_A 121 NGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQ----VDVATFNTEGMERLELTQPEKARQLKVI 196 (310)
T ss_dssp ECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCHHHHTTEEEE
T ss_pred ecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCC----ccEEEecchhHHHHHHhCccchhCEEEE
Confidence 53 333321 1 12 3333321 12222356677899998988 999999988888777654 1367766
Q ss_pred ccccccccceEEEEeCCCC--ChHHHHHHHHhhhhcCchHHHHHHh
Q 047109 710 APNYTTTSGFGFVFQKGSP--LVHDISRAIAKLREEGTLRKIEIEW 753 (808)
Q Consensus 710 ~~~~~~~~~~~~~~~k~sp--~~~~~~~~i~~l~e~G~~~~~~~~~ 753 (808)
...-. ...++++++|+-| +++.++.+|.++.++|....+.+++
T Consensus 197 ~~s~~-~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 197 WKSPL-IPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp EEEEE-EECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred EECCC-CCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 54333 4457899999944 9999999999999999888777766
No 76
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.25 E-value=3.6e-05 Score=79.83 Aligned_cols=209 Identities=13% Similarity=0.081 Sum_probs=131.6
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChhH
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPTG 79 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~~ 79 (808)
.++||++.|..+........+++.+.++.+ +++.+.. .+..++....+...++++. ++.+||. +. .+..
T Consensus 1 ~~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g-------~~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~-~~~~ 70 (313)
T 2h3h_A 1 MLTIGVIGKSVHPYWSQVEQGVKAAGKALG-------VDTKFFV-PQKEDINAQLQMLESFIAE-GVNGIAIAPS-DPTA 70 (313)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHHT-------CEEEEEC-CSSSCHHHHHHHHHHHHHT-TCSEEEECCS-STTT
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHHHHcC-------CEEEEEC-CCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-ChHH
Confidence 368999998755444456677777776643 3544332 2357888777888888876 8988885 44 3332
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCC--ccccCcHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNT--WGSDNIIPY 155 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~--~g~~~~~~~ 155 (808)
.......+...+||+|......+. . +.+..+.+++. ..++.+++.+... |.++++++..+.. ... .-.+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~-~-~~~~~V~~d~~---~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~-~R~~g 144 (313)
T 2h3h_A 71 VIPTIKKALEMGIPVVTLDTDSPD-S-GRYVYIGTDNY---QAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSL-QRIQG 144 (313)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT-S-CCSCEEECCHH---HHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHH-HHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC-c-ceeEEECcCHH---HHHHHHHHHHHHHcCCCCEEEEEECCCCCccHH-HHHHH
Confidence 223333444578999998764332 1 13344556666 7778888888766 8999999986532 233 45678
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
|.+.+++.|+.+........ +.++....++++.+. .+++|+. .+...+..+++++++.|. ..+...++.+
T Consensus 145 f~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 145 FKDAIKDSEIEIVDILNDEE---DGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHHHHTTSSCEEEEEEECSS---CHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HHHHhcCCCCEEEEeecCCC---CHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 88999999988764322222 344444455555433 4566554 455678889999999995 3334444444
No 77
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.21 E-value=5.4e-06 Score=85.83 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=135.8
Q ss_pred CCCeEEEEeecCCccceEEEeeCCCCCCccceEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 047109 412 KINKLRIGVPVNGHIEFVHVVRDPQSVNATLIVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQ 491 (808)
Q Consensus 412 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 491 (808)
+.++|++|+.. .++|... ...-.++++.+++++|.++++ ... .+|++++..|.+|
T Consensus 12 ~~~~l~~Gv~p-~~~~~~~--------------~~~~~~l~~~L~k~lG~~ve~--~~~--------~~~~~~i~aL~~G 66 (321)
T 3p7i_A 12 QEKALNFGIIS-TESQQNL--------------KPQWTPFLQDMEKKLGVKVNA--FFA--------PDYAGIIQGMRFN 66 (321)
T ss_dssp --CCEEEEECC-SSCHHHH--------------HHHHHHHHHHHHHHHTSCEEE--ECC--------SSHHHHHHHHHTT
T ss_pred cCCcEEEEEec-CCCHHHH--------------HHHHHHHHHHHHHHHCCCEEE--Eec--------CCHHHHHHHHHcC
Confidence 56789999985 3444432 111247999999999985544 432 1799999999999
Q ss_pred cccEEEe-ceeeecc--ccceeeccc-------cceeccEEEEEecCCCCccceeeccCchhHHHHHHHHHHHHHhhhee
Q 047109 492 KFDAVVG-ETTITAN--RSLYVDFTL-------PYTDMGIGMIVPTDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWI 561 (808)
Q Consensus 492 ~~Di~~~-~~~~t~~--r~~~~dfs~-------p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~ 561 (808)
++|+++. +...+.. |.....|.. |++ ..++++++..+..
T Consensus 67 ~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds~i~----------------------------- 115 (321)
T 3p7i_A 67 KVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDSPIN----------------------------- 115 (321)
T ss_dssp SCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTCSCC-----------------------------
T ss_pred CCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCCCCC-----------------------------
Confidence 9999975 3444433 222333432 332 2467777654321
Q ss_pred eecccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhh-hccCCc
Q 047109 562 IERPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIK-LASRDN 640 (808)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~-~~~~~~ 640 (808)
+++++. ..++++
T Consensus 116 -------------------------------------------------------------------sl~DL~~~~kgk~ 128 (321)
T 3p7i_A 116 -------------------------------------------------------------------NLNDLLAKRKDLT 128 (321)
T ss_dssp -------------------------------------------------------------------SHHHHHHTGGGCE
T ss_pred -------------------------------------------------------------------CHHHHHhhcCCCE
Confidence 333331 115677
Q ss_pred eee-ecCCcHH----Hh-h-hccCCCccc--ccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC---CCceEE
Q 047109 641 IGS-QLGSFVP----GA-L-SNLNFKDSR--LKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY---STDYTM 708 (808)
Q Consensus 641 i~~-~~~s~~~----~~-l-~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~ 708 (808)
+++ ..+++.. .. + .+.+..... .+.+.+..+.+..|..|+ +|+.+.+...+..+.++. ..++++
T Consensus 129 va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~p~~~~~lrv 204 (321)
T 3p7i_A 129 FGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQ----VDVATNNTENLDKLKTSAPEKLKELKV 204 (321)
T ss_dssp EEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHCHHHHTTEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCC----ceEEEechHHHHHHHHhCcchhccEEE
Confidence 875 3333321 11 2 333332221 223456778899998888 999999988877776643 236777
Q ss_pred eccccccccceEEEEeCCC-C-ChHHHHHHHHhhhhcCchHHHHHHh
Q 047109 709 IAPNYTTTSGFGFVFQKGS-P-LVHDISRAIAKLREEGTLRKIEIEW 753 (808)
Q Consensus 709 ~~~~~~~~~~~~~~~~k~s-p-~~~~~~~~i~~l~e~G~~~~~~~~~ 753 (808)
+...-. ...++++++|+- + +++.++.+|.++.++|....+.+++
T Consensus 205 l~~s~~-~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 205 IWKSPL-IPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp EEECSC-BCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EEEcCC-CCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 754433 445789999994 4 9999999999999999887776665
No 78
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.20 E-value=2.7e-05 Score=79.93 Aligned_cols=209 Identities=12% Similarity=0.032 Sum_probs=129.3
Q ss_pred eEEEEEEec---CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 2 VHVGVILDM---RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
.+||+++|. +.+.......+++.+.++.+ ++ +.+.++..++....+....+++. +|.+||... ...
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g-------~~--~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~-~~~ 88 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKG-------RQ--LLLADGKHSAEEERQAIQYLLDL-RCDAIMIYP-RFL 88 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTT-------CE--EEEECCTTSHHHHHHHHHHHHHT-TCSEEEEEC-SSS
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCC-------CE--EEEEeCCCCHHHHHHHHHHHHhc-CCCEEEEec-CCC
Confidence 579999996 34455566777777766532 33 34567777888777777778765 899988744 322
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHH
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYL 156 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 156 (808)
....+..+.+..++|+|......+. . .+..+..++. ..+..+++.+...|.++++++..+.. .+. .-.+.|
T Consensus 89 ~~~~~~~l~~~~~iPvV~~~~~~~~-~--~~~~V~~d~~---~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~-~R~~gf 161 (296)
T 3brq_A 89 SVDEIDDIIDAHSQPIMVLNRRLRK-N--SSHSVWCDHK---QTSFNAVAELINAGHQEIAFLTGSMDSPTSI-ERLAGY 161 (296)
T ss_dssp CHHHHHHHHHTCSSCEEEESCCCSS-S--GGGEECCCHH---HHHHHHHHHHHHTTCCSEEEECCCTTCHHHH-HHHHHH
T ss_pred ChHHHHHHHhcCCCCEEEEccccCC-C--CCCEEEEchH---HHHHHHHHHHHHCCCceEEEEcCCCCCccHH-HHHHHH
Confidence 2223333332279999998654332 1 2234455555 66777888887779999999986532 233 456788
Q ss_pred HHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 157 FDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
.+.+++.|+.+.....+.. ..+.++-...++++.+ ..+++|+ +.+...+..+++++++.|+..++ ...++-+
T Consensus 162 ~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 162 KDALAQHGIALNEKLIANG-KWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHTTTCCCCGGGEECC-CSSHHHHHHHHHHHHTC--CCSEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHcCCCCChhhEEeC-CCChhHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8999999876542211222 1233344445555543 3567655 45667788999999999985443 3344433
No 79
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.17 E-value=3.4e-05 Score=78.20 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=136.2
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCC-eEEEEecCCChhH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVD-LQAIICTEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~-v~aiiG~~~~s~~ 79 (808)
++||++.|... +.-.....+++-+.++.+ +++.+...++..++....+....+++. + +.+||-....+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAG-------VTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHT-------CEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH
Confidence 58999999544 444556677777766642 466555545678888888888888887 6 9888864402333
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc----CCcEEEEEEecCC--ccccCcH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF----KWKHVILIYEDNT--WGSDNII 153 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~----~w~~v~ii~~d~~--~g~~~~~ 153 (808)
.......+...++|+|......+. .. ......+++. ..++.+++.+... |.++++++..+.. ... .-.
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~-~~-~~~~V~~d~~---~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~-~R~ 146 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG-DA-HQGLVATDNY---AAGQLAARALLATLDLSKERNIALLRLRAGNASTD-QRE 146 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-SC-SSEEEECCHH---HHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHH-HHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC-CC-cceEEccCHH---HHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHH-HHH
Confidence 344445556679999998764433 11 2334556666 7788888888776 8999999985432 233 456
Q ss_pred HHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 154 PYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 154 ~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
+.|.+.+++. |+++... ... ..+.+.....+.++.+. .+++| ++.+...+..+++++++.|+ ..+...++.+
T Consensus 147 ~gf~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 147 QGFLDVLRKHDKIRIIAA--PYA-GDDRGAARSEMLRLLKETPTIDGL-FTPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHHTTCTTEEEEEC--CBC-CSSHHHHHHHHHHHHHHCSCCCEE-ECCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHHhCCCcEEEEE--ecC-CCcHHHHHHHHHHHHHhCCCceEE-EECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 8888999988 8887632 222 22444444455554433 44544 44566678889999999997 3444444444
Q ss_pred c
Q 047109 231 S 231 (808)
Q Consensus 231 ~ 231 (808)
.
T Consensus 222 ~ 222 (276)
T 3ksm_A 222 Q 222 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 80
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.12 E-value=8.7e-05 Score=76.38 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=123.8
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
.+||++.+.+.++-....+|++ +.+++.|-..+.++.+.+.|+.+++.+..+...++.+. +|.+||... ... ..
T Consensus 9 ~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~-~~~-~~ 82 (302)
T 2qh8_A 9 AKVAVSQIVEHPALDATRQGLL---DGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIA-TPT-AQ 82 (302)
T ss_dssp EEEEEEESSCCHHHHHHHHHHH---HHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEEEES-HHH-HH
T ss_pred cEEEEEEeccChhHHHHHHHHH---HHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhC-CCCEEEECC-hHH-HH
Confidence 5799985555554334445554 34555554455788888899999999988888888865 899999865 432 22
Q ss_pred HHHHhcCCCCccEEeccCCCCccc----------ccceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCC-cc
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSL----------TSYSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNT-WG 148 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~l----------s~~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~-~g 148 (808)
.+.. ...++|+|..+..+|. . .+.+.... +. ..+...++++... |.+++++|+.... .+
T Consensus 83 ~~~~--~~~~iPvV~~~~~~~~-~~~~v~~~~~~~~~~~gv~--~~---~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~ 154 (302)
T 2qh8_A 83 ALVS--ATKTIPIVFTAVTDPV-GAKLVKQLEQPGKNVTGLS--DL---SPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHH--HCSSSCEEEEEESCTT-TTTSCSCSSSCCSSEEEEE--CC---CCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHh--cCCCcCEEEEecCCHh-hcCccccccCCCCCEEEEE--CC---cCHHHHHHHHHHhCCCCcEEEEEecCCCcch
Confidence 3333 2679999987654432 1 11233222 22 2245566777665 9999999997653 24
Q ss_pred ccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 047109 149 SDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLG 218 (808)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~g 218 (808)
. .-.+.+++++++.|+.+..... . ..++....++++. .++++|++..+. .+...++++.+.+
T Consensus 155 ~-~r~~g~~~al~~~gi~~~~~~~-~----~~~~~~~~~~~l~-~~~dai~~~~D~-~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 155 V-SLMELLKLSAAKHGIKLVEATA-L----KSADVQSATQAIA-EKSDVIYALIDN-TVASAIEGMIVAA 216 (302)
T ss_dssp H-HHHHHHHHHHHHTTCEEEEEEC-S----SGGGHHHHHHHHG-GGCSEEEECSCH-HHHTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCCEEEEEec-C----ChHHHHHHHHHHh-ccCCEEEECCcH-hHHHHHHHHHHHH
Confidence 4 5568899999999998765432 1 2346666777776 367887775443 3434444444443
No 81
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.10 E-value=8.9e-05 Score=75.83 Aligned_cols=208 Identities=10% Similarity=-0.039 Sum_probs=131.8
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-ecCCChhH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAII-CTEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aii-G~~~~s~~ 79 (808)
-+||+++|... +.-.....+++-+.++.+ + ++.+.++..++....+....+++. ++.+|| .|. .+..
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~~~~ 74 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLG-------G--TAIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQLG-NLDV 74 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTT-------C--EEEEEECTTCHHHHHHHHHHHHHH-CCSEEEEESS-CHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------C--EEEEEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-Chhh
Confidence 47999999644 333345566666665542 3 344556777888777777788876 888888 455 5444
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh--cCCcEEEEEEecCCccc-cCcHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV--FKWKHVILIYEDNTWGS-DNIIPYL 156 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~--~~w~~v~ii~~d~~~g~-~~~~~~~ 156 (808)
.......+...+||+|......+. .+........ ..++.+++.+.. .|.++++++........ ..-.+.|
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~----~~~~V~~D~~---~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDTATPH----AINNTTSNNY---SIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQM 147 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCTT----CSEEEEECHH---HHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcEEEecCCCCC----cCceEecChH---HHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHH
Confidence 455555666679999998765433 3344556666 778888888877 89999999975433221 1346778
Q ss_pred HHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCC-----CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 157 FDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSS-----ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 157 ~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
.+.+++. |+++.....+.....+.+.....+.++.+. ++++| ++.+...+..+++++++.|+. +...++-+
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg~d 224 (291)
T 3l49_A 148 KYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYGVD 224 (291)
T ss_dssp HHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEEEE
T ss_pred HHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEEec
Confidence 8899988 677543322222011223333444444332 56665 466777889999999999984 44444433
No 82
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.09 E-value=0.00014 Score=74.72 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=130.1
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
.+|||++--...+.=...++|++- ++++.|...+.++++.+.|.++|+..+.+.+.+|+++ ++.+|++-. +..+
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~---~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~-~~DlIiai~--t~aa 81 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLD---GLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIA--TPTA 81 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHH---HHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTT-CCSEEEEES--HHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHH---HHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhc-CCcEEEEcC--CHHH
Confidence 478999877766654455666654 4555555555789999999999999999999999987 899999754 4445
Q ss_pred HHHHHhcCCCCccEEeccCCCCccccc----------ceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCCcc
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTS----------YSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNTWG 148 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~----------~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~~g 148 (808)
.++... ..++|+|..+.++|. ... ++.-+. +. ......++++++. +-++++++|+..+-+
T Consensus 82 ~a~~~~--~~~iPVVf~~v~dp~-~~~l~~~~~~~g~nvtGv~--~~---~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~ 153 (302)
T 3lkv_A 82 QALVSA--TKTIPIVFTAVTDPV-GAKLVKQLEQPGKNVTGLS--DL---SPVEQHVELIKEILPNVKSIGVVYNPGEAN 153 (302)
T ss_dssp HHHHHH--CSSSCEEEEEESCTT-TTTSCSCSSSCCSSEEEEE--CC---CCHHHHHHHHHHHSTTCCEEEEEECTTCHH
T ss_pred HHHHhh--cCCCCeEEEecCCcc-hhhhcccccCCCCcEEEEE--CC---cCHHHHHHHHHHhCCCCCEEEEEeCCCccc
Confidence 555443 357999988777765 322 233222 22 1234455666542 689999999776533
Q ss_pred ccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHH---HHHHHHHHHcC
Q 047109 149 SDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALA---SHLFLNAKKLG 218 (808)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~---~~~l~~a~~~g 218 (808)
.....+.+++.+++.|++++.... . ...+....++.+. .+.+++++..+.... ..+...+.+.+
T Consensus 154 s~~~~~~~~~~~~~~g~~~v~~~~-~----~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~ 220 (302)
T 3lkv_A 154 AVSLMELLKLSAAKHGIKLVEATA-L----KSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAK 220 (302)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEC-S----SGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEEec-C----ChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcC
Confidence 214567888889999999875432 1 3446666666665 467888887665432 23344444444
No 83
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.07 E-value=5.2e-05 Score=77.87 Aligned_cols=198 Identities=12% Similarity=0.012 Sum_probs=131.6
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC--CCHHHHHHHHHHhhhcCCeEEEEe-cCCCh
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSK--GDPLHALTTVLNLMQNVDLQAIIC-TEMTP 77 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~--~~~~~a~~~a~~li~~~~v~aiiG-~~~~s 77 (808)
++||++.|... +.-.....+++-+.++.+ +++. +.++. .++..-.+....+++. ++.+||- |. ..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~-~~ 72 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELK-------VDLQ--ILAPPGANDVPKQVQFIESALAT-YPSGIATTIP-SD 72 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHT-------CEEE--EECCSSSCCHHHHHHHHHHHHHT-CCSEEEECCC-CS
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhC-------cEEE--EECCCCcCCHHHHHHHHHHHHHc-CCCEEEEeCC-CH
Confidence 68999999753 445556777777777643 3444 44543 6888888888888876 8888884 44 44
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcC--CcEEEEEEecCCc--cccC
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFK--WKHVILIYEDNTW--GSDN 151 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~--w~~v~ii~~d~~~--g~~~ 151 (808)
.........+...+||+|......+. ..+ .+....+.+. ..++.+++.+...+ -++++++..+... .. .
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~-~~~~~~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~-~ 147 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKD-KTKNPYLVFLGSDNL---LAGKKLGEKALELTPSAKRALVLNPQPGHIGLE-K 147 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSC-TTTSCCSCEEECCHH---HHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHH-H
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCcc-ccccCcceEEccChH---HHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHH-H
Confidence 43334444555679999998765443 221 3445566666 77888888887777 8999999755432 22 4
Q ss_pred cHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 152 IIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
-.+.|++.+++.|+++.... . ....+.....+.++.+ ..+++| ++.+...+..+++++++.|+.
T Consensus 148 R~~Gf~~~l~~~g~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 148 RAYGIKTILQDKGIFFEELD--V--GTDPNQVQSRVKSYFKIHPETNII-FCLTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEE--C--CSCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCeEEEee--c--CCChHHHHHHHHHHHHhCCCCCEE-EEcCCcchHHHHHHHHhcCCc
Confidence 46888999999999887643 2 1233444445555332 345554 456677788999999999874
No 84
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.06 E-value=0.00014 Score=75.33 Aligned_cols=206 Identities=7% Similarity=0.000 Sum_probs=124.3
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEE-ecCCChhH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSR-DSKGDPLHALTTVLNLMQNVDLQAII-CTEMTPTG 79 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-d~~~~~~~a~~~a~~li~~~~v~aii-G~~~~s~~ 79 (808)
+||++.|..+ +.-.....+++.++++.+ +++.+. ++..++....+....++++ +|.+|| .|. .+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g---------~~~~~~~~~~~d~~~q~~~i~~li~~-~vdgiii~~~-~~~~ 73 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG---------IDVTYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSAV-SPDG 73 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT---------CEEEECCCSSCCHHHHHHHHHHHHHT-TCSEEEECCS-SSST
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC---------CEEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-CHHH
Confidence 6999998654 334456677777776654 234454 4678888888888888876 888866 455 4443
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh---cCCcEEEEEEecCC--ccccCcHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV---FKWKHVILIYEDNT--WGSDNIIP 154 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~---~~w~~v~ii~~d~~--~g~~~~~~ 154 (808)
...+...+...+||+|.+....+. -....+....... ..++.+++.+.. .|.++++++..... ... ...+
T Consensus 74 ~~~~~~~a~~~gipvV~~d~~~~~-~~~~~~v~~~D~~---~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~-~r~~ 148 (316)
T 1tjy_A 74 LCPALKRAMQRGVKILTWDSDTKP-ECRSYYINQGTPK---QLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQN-QWVK 148 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCG-GGCSEEEESCCHH---HHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHH-HHHH
T ss_pred HHHHHHHHHHCcCEEEEecCCCCC-CCceEEEecCCHH---HHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHH-HHHH
Confidence 333444455679999998754322 1112222244444 567777777755 57899999985432 223 4556
Q ss_pred HHHHhhhcC--CcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 155 YLFDSLHDN--DIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 155 ~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
.+.+.+++. ++++.....-.. +.+.....++++.+. .+++|+ +.+...+..+++++++.| . .+...++-+
T Consensus 149 g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 149 EAKAKISQEHPGWEIVTTQFGYN---DATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTT---CHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHHHhhCCCcEEEEeccCCC---CHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 777888765 566554322122 344444455544432 355544 455667888999999998 4 444444433
No 85
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.05 E-value=9e-05 Score=75.67 Aligned_cols=203 Identities=7% Similarity=0.020 Sum_probs=124.8
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
.+||++.|... +.-.....+++.+.++.+ +++. +.++..++....+....+++. ++.+||... .....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~-~~~~~ 76 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKG-------YTLI--LGNAWNNLEKQRAYLSMMAQK-RVDGLLVMC-SEYPE 76 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEEEC-SCCCH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CeEE--EEcCCCChHHHHHHHHHHHhC-CCCEEEEEe-ccCCH
Confidence 47999998643 334456677777776542 3443 356667887777777777765 898888633 22211
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC--CccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN--TWGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~~~~ 158 (808)
.....+....++|+|......+. . +....+.+++. ..++.+++.+...|.++++++..+. .... .-.+.|.+
T Consensus 77 ~~~~~l~~~~~iPvV~~~~~~~~-~-~~~~~V~~d~~---~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~g~~~ 150 (289)
T 1dbq_A 77 PLLAMLEEYRHIPMVVMDWGEAK-A-DFTDAVIDNAF---EGGYMAGRYLIERGHREIGVIPGPLERNTGA-GRLAGFMK 150 (289)
T ss_dssp HHHHHHHHTTTSCEEEEECSSCC-S-SSCEEEEECHH---HHHHHHHHHHHHTTCCSEEEECCC------C-HHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEccCCCc-c-CcCCEEEeCcH---HHHHHHHHHHHHCCCCeEEEEecCCccccHH-HHHHHHHH
Confidence 12222323368999998654332 1 12334556666 7778888888778999999997653 2334 55688899
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG 223 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~ 223 (808)
.+++.|+.+........ ..+.++....+.++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 151 ~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~ 215 (289)
T 1dbq_A 151 AMEEAMIKVPESWIVQG-DFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQ 215 (289)
T ss_dssp HHHHTTCCCCGGGBCCC-CSSHHHHHHHHHHHHTSSSCCSEEE-ESCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHCCCCCChHHeEeC-CCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 99999876432111111 1133344445555543 3567655 45667788999999999985443
No 86
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.05 E-value=0.00018 Score=74.21 Aligned_cols=203 Identities=13% Similarity=0.055 Sum_probs=123.2
Q ss_pred CeEEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 1 EVHVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 1 ~i~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
+++||++.|..+. .......+++-+.++.+ +++ .+.++..++....+....+++. +|.+||... ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~l--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~-~~~~ 70 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG-------ITL--KIADGQQKQENQIKAVRSFVAQ-GVDAIFIAP-VVAT 70 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHT-------CEE--EEEECTTCHHHHHHHHHHHHHH-TCSEEEECC-SSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcC-------CEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeC-CChh
Confidence 5799999997543 34455666666665543 344 4456667887777777777766 899888644 3221
Q ss_pred -HHHHHHhcCCCCccEEeccCCCCcccc-c-ceeeeccCCchhhHHHHHHHHHHHhcC---CcEEEEEEecCC--ccccC
Q 047109 80 -AHILAEIGSKAKIPVISLYATLPSSLT-S-YSIQIDQDDEASQSQAKGIADLIRVFK---WKHVILIYEDNT--WGSDN 151 (808)
Q Consensus 80 -~~~~~~~~~~~~iP~is~~~~~~~~ls-~-~~~r~~p~~~~~~~~~~a~~~ll~~~~---w~~v~ii~~d~~--~g~~~ 151 (808)
.......+...++|+|......+. .. + .+..+..++. ..++.+++.+...| .++++++..... ... .
T Consensus 71 ~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~V~~D~~---~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~-~ 145 (306)
T 2vk2_A 71 GWEPVLKEAKDAEIPVFLLDRSIDV-KDKSLYMTTVTADNI---LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI-D 145 (306)
T ss_dssp SCHHHHHHHHHTTCCEEEESSCCCC-SCGGGSSEEEECCHH---HHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHH-H
T ss_pred hHHHHHHHHHHCCCCEEEecCCCCC-CCccceEEEEecCHH---HHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHH-H
Confidence 122223344568999998764433 21 1 2344556655 66777777776655 789999986532 222 3
Q ss_pred cHHHHHHhhhcCCc-EEEEEEecCCCCCChHHHHHHHHHhcC-----CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 047109 152 IIPYLFDSLHDNDI-DIARRITISMSSNTDDQVIEKLSMLKS-----SETKVFVVHMSHALASHLFLNAKKLGMMSKG 223 (808)
Q Consensus 152 ~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~~l~~a~~~gl~~~~ 223 (808)
-.+.|.+.+++.|. .+.... .. ..+.++-...++++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 146 R~~Gf~~al~~~g~~~~~~~~--~~-~~~~~~~~~~~~~ll~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 219 (306)
T 2vk2_A 146 RKKGFAEAIKNAPNIKIIRSQ--SG-DFTRSKGKEVMESFIKAENNGKNICMVY-AHNDDMVIGAIQAIKEAGLKPGK 219 (306)
T ss_dssp HHHHHHHHTTTCTTEEEEEEE--EC-TTCHHHHHHHHHHHHHHTTTTTTCCEEE-ESSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHhhCCCeEEEEec--cC-CCcHHHHHHHHHHHHHhCCCCCCeeEEE-ECCchHHHHHHHHHHHcCCCCCC
Confidence 46788899999885 333211 11 1133333334444332 3466654 45667788899999999985443
No 87
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.04 E-value=0.00014 Score=74.76 Aligned_cols=209 Identities=12% Similarity=-0.016 Sum_probs=126.7
Q ss_pred CeEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChh
Q 047109 1 EVHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPT 78 (808)
Q Consensus 1 ~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~ 78 (808)
+.+||++.|..+ +.......+++.+.++.+ +++.+ +.++..++....+....+++. ++.+||- +. .+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g-------~~~~~-~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~~-~~~ 73 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFN-------LNASQ-VGPSSTDAPQQVKIIEDLIAR-KVDAITIVPN-DAN 73 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTT-------EEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCS-CHH
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcC-------CEEEE-ECCCCCCHHHHHHHHHHHHHc-CCCEEEEecC-ChH
Confidence 368999998654 345566777777777653 33332 234667888777778888876 8988774 44 444
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh-cCCc-EEEEEEecCC--ccccCcHH
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV-FKWK-HVILIYEDNT--WGSDNIIP 154 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~-~~w~-~v~ii~~d~~--~g~~~~~~ 154 (808)
........+...++|+|........ ...+......+. ..++.+++.+.. .|.+ +++++..... ... .-.+
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~~~--~~~~~~v~~d~~---~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~-~R~~ 147 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPGQP--SANWDVEIIDNE---KFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHN-LWAD 147 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTTCT--TCSEEEESSCHH---HHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCC--CCceEEEecCHH---HHHHHHHHHHHHHhCcCceEEEEecCCCCccHH-HHHH
Confidence 3333444455679999998754111 112334555656 677778888766 8887 9999875432 222 4457
Q ss_pred HHHHhhhcCC--cEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 047109 155 YLFDSLHDND--IDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT 229 (808)
Q Consensus 155 ~~~~~~~~~g--~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 229 (808)
.|.+.+++.+ +++... .+.. ..+.++....+.++.+. .+++|+ +.+...+..+++++++.|+. .+...++.
T Consensus 148 gf~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 148 LLVKYQKEHYPDMHEVTR-RMPV-AESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHHCTTEEESSS-CBSC-TTCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHHhhCCCCEEEEe-ecCC-CCCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 7888888754 443211 1121 12344445555555443 345444 45556788899999999984 33434433
No 88
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.04 E-value=0.00014 Score=74.25 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=129.9
Q ss_pred eEEEEEEecCC---cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 2 VHVGVILDMRS---WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
.+||++.|..+ +.-.....+++.++++.+ +++.+...++..++....+....+++. ++.+||... ...
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~-~~~ 76 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYE-------IKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAA-ADY 76 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHT-------CEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECC-SCT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcC-------CEEEEecCCCCCCHHHHHHHHHHHHHh-CCCEEEEeC-CCh
Confidence 47999999644 444456677777766553 455544444367887777777778776 899988644 332
Q ss_pred HH-HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc-C-CcEEEEEEecCC--ccccCcH
Q 047109 79 GA-HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF-K-WKHVILIYEDNT--WGSDNII 153 (808)
Q Consensus 79 ~~-~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~-~-w~~v~ii~~d~~--~g~~~~~ 153 (808)
.. ......+...+||+|......+. .. .+..+.+.+. ..++.+++.+... | .++++++..+.. ... .-.
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~-~R~ 150 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-DI-ADITVATDNI---QAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAM-DRE 150 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-CC-CSEEEECCHH---HHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHH-HHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-Cc-ceEEEeeChH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HHH
Confidence 22 23334445579999998754332 11 2445666666 7778888887664 6 999999986532 233 456
Q ss_pred HHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 154 PYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
+.|.+.+++.|..+... +.. ..+.++....+.++.+ ..+++|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 151 ~gf~~~l~~~g~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAI--YYC-DSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHHGGGGGGEEEE--EEC-TTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHHhCCCcEEee--ecC-CCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 78888898888764332 211 2233444444555443 2355544 55667788999999999985 344444433
No 89
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.00 E-value=3.5e-05 Score=78.81 Aligned_cols=200 Identities=16% Similarity=0.044 Sum_probs=121.8
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
-+||++.|.+.+.......+++.+.++. ++++ .+.++..++....+....+++. +|.+||... ......
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~~ 77 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKH-------HLHV--AVASSEENEDKQQDLIETFVSQ-NVSAIILVP-VKSKFQ 77 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGG-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TEEEEEECC-SSSCCC
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHHc-CccEEEEec-CCCChH
Confidence 4799999983333344555555554432 2344 3456667887777777777765 899998754 332212
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~~ 159 (808)
.+..+ .++|+|......+. . .+..+...+. ..++.+++.+...|.++++++..... ... .-.+.|.+.
T Consensus 78 ~~~~l---~~iPvV~~~~~~~~-~--~~~~V~~d~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~gf~~~ 147 (288)
T 2qu7_A 78 MKREW---LKIPIMTLDRELES-T--SLPSITVDNE---EAAYIATKRVLESTCKEVGLLLANPNISTTI-GRKNGYNKA 147 (288)
T ss_dssp CCGGG---GGSCEEEESCCCSS-C--CCCEEEECHH---HHHHHHHHHHHTSSCCCEEEEECCTTSHHHH-HHHHHHHHH
T ss_pred HHHHh---cCCCEEEEecccCC-C--CCCEEEECcH---HHHHHHHHHHHHcCCCcEEEEecCCCCCCHH-HHHHHHHHH
Confidence 22223 68999998654332 1 2344556666 77788888888889999999986532 233 456788888
Q ss_pred hhcCCcEEEEEEec--CCCCC----ChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe
Q 047109 160 LHDNDIDIARRITI--SMSSN----TDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGY 224 (808)
Q Consensus 160 ~~~~g~~i~~~~~~--~~~~~----~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~ 224 (808)
+++.|+.+.....+ .. .. +..+-...+.++.+..+++|+ +.+...+..+++++++.|+..++-
T Consensus 148 l~~~g~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~d 216 (288)
T 2qu7_A 148 ISEFDLNVNPSLIHYSDQ-QLGTNAQIYSGYEATKTLLSKGIKGIV-ATNHLLLLGALQAIKESEKEIKKD 216 (288)
T ss_dssp HHHTTCCCCGGGEEECCS-SCSHHHHHHHHHHHHHHHHHTTCCEEE-ECSHHHHHHHHHHHHHSSCCBTTT
T ss_pred HHHcCCCCCcceEEeccC-CccccCCHHHHHHHHHHHHhcCCCEEE-ECCcHHHHHHHHHHHHhCCCCCCc
Confidence 99988765321111 11 11 122222334443323777765 455667888999999999854433
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.99 E-value=0.0002 Score=73.19 Aligned_cols=204 Identities=10% Similarity=0.031 Sum_probs=125.1
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
.+||++.|.. .+.......+++.++++.+ +++ .+.++..++....+....+++. ++.+||.........
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLG-------YEA--TIFDSQNDTAKESAHFDAIIAA-GYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTT-------CEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHH
Confidence 5799999964 3444556677777766532 343 4566777888777777777765 899888743022222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceee-eccCCchhhHHHHHHHHHHHhc------CCcE--EEEEEecCC--ccc
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQ-IDQDDEASQSQAKGIADLIRVF------KWKH--VILIYEDNT--WGS 149 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r-~~p~~~~~~~~~~a~~~ll~~~------~w~~--v~ii~~d~~--~g~ 149 (808)
......+...++|+|......+. .. .+.. +.+++. ..++.+++.+... |.++ ++++..... ...
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~~V~~D~~---~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA-RG-LAVAQIYSDNY---YGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC-SS-SSSEEEEECHH---HHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC-CC-ceEEEEeCCHH---HHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 22233344578999998754333 11 2233 566666 6677788877665 7889 666664332 233
Q ss_pred cCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 047109 150 DNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSW 226 (808)
Q Consensus 150 ~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~ 226 (808)
.-.+.|.+.+++. |+++..... . ..+..+-...++++.+ ..+++|+ +.+...+..+++++++.|+ .+...
T Consensus 148 -~R~~gf~~~l~~~~g~~~~~~~~--~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~--~dv~v 220 (290)
T 2fn9_A 148 -DRSNGFHSVVDQYPEFKMVAQQS--A-EFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR--TDIYI 220 (290)
T ss_dssp -HHHHHHHHHHTTSTTEEEEEEEE--C-TTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC--TTCEE
T ss_pred -HHHHHHHHHHHhCCCCEEEEecc--C-CCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC--CCeEE
Confidence 4567888999998 887653221 1 1133333344444432 3567655 4567778899999999997 44433
Q ss_pred E
Q 047109 227 I 227 (808)
Q Consensus 227 i 227 (808)
+
T Consensus 221 i 221 (290)
T 2fn9_A 221 F 221 (290)
T ss_dssp E
T ss_pred E
Confidence 3
No 91
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.99 E-value=0.00045 Score=72.68 Aligned_cols=211 Identities=12% Similarity=0.022 Sum_probs=134.8
Q ss_pred eEEEEEEecCC--cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEecCCChh
Q 047109 2 VHVGVILDMRS--WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQN-VDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~-~~v~aiiG~~~~s~ 78 (808)
.+||++.|... +.-.....+++-+.++.+ +++. +.++..++..-.+...+++.. +++.+||-.. ...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g-------~~~~--~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLG-------LDLR--ILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcC-------CeEE--EEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chh
Confidence 58999999754 334456677777766653 3444 446778888888888899985 5888887644 444
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCccccc------------ceeeeccCCchhhHHHHHHHHHHHhcC------C-cEEE
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTS------------YSIQIDQDDEASQSQAKGIADLIRVFK------W-KHVI 139 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~------------~~~r~~p~~~~~~~~~~a~~~ll~~~~------w-~~v~ 139 (808)
....+...+...+||+|......+. ... ++..+.+.+. ..++.+++.+...+ - ++++
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~g~~~~~g~~~~i~ 149 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLTL-DQRELIGQSRQNYSDWIGSMVGDDE---EAGYRMLKELLHKLGPVPAGHGIELL 149 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCCT-TTC------------CEEEEECCHH---HHHHHHHHHHHHHHCCCCSSCCEEEE
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCCh-HHHhhhcCCchhccceeeeecCChH---HHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 4555566777889999998765544 220 2555666666 77788888776655 4 7999
Q ss_pred EEEecCCc--cccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHH
Q 047109 140 LIYEDNTW--GSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAK 215 (808)
Q Consensus 140 ii~~d~~~--g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~ 215 (808)
++...... .. .-.+.|.+.+++.|. +.....+.. ..+.+.-...++++.+. .+++ |++++...+..++++++
T Consensus 150 ~i~g~~~~~~~~-~R~~Gf~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~a-I~~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 150 AFSGLKVTPAAQ-LRERGLRRALAEHPQ-VHLRQLVYG-EWNRERAYRQAQQLLKRYPKTQL-VWSANDEMALGAMQAAR 225 (350)
T ss_dssp EEESCTTSHHHH-HHHHHHHHHHHHCTT-EEEEEEEEC-TTCHHHHHHHHHHHHHHCTTEEE-EEESSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHH-HHHHHHHHHHHHCCC-eEEEEEeeC-CCcHHHHHHHHHHHHHhCCCcCE-EEECChHHHHHHHHHHH
Confidence 98755322 22 346788899999886 222222222 22344444445544433 3444 44566777889999999
Q ss_pred HcCCCCCC-eEEEEeC
Q 047109 216 KLGMMSKG-YSWIVTA 230 (808)
Q Consensus 216 ~~gl~~~~-~~~i~~~ 230 (808)
+.|+..++ ...++.+
T Consensus 226 ~~G~~vP~di~vvg~d 241 (350)
T 3h75_A 226 ELGRKPGTDLLFSGVN 241 (350)
T ss_dssp HTTCCBTTTBEEEEES
T ss_pred HcCCCCCCCeEEEecC
Confidence 99985444 4444444
No 92
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.98 E-value=0.00025 Score=74.08 Aligned_cols=199 Identities=11% Similarity=0.011 Sum_probs=125.5
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCC--eEEEEecCCChh
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVD--LQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~--v~aiiG~~~~s~ 78 (808)
.+||++.|.. .+.-.....+++-+.++.+ +++ .+.++..++....+....+++. + +.+||... ...
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~l--~~~~~~~~~~~~~~~i~~l~~~-~~~vdgiIi~~-~~~ 74 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVG-------LPY--VPLTTEGSSEKGIADIRALLQK-TGGNLVLNVDP-NDS 74 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------CCE--EEEECTTCHHHHHHHHHHHHHH-TTTCEEEEECC-SSH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcC-------CEE--EEecCCCCHHHHHHHHHHHHHC-CCCCCEEEEeC-CCH
Confidence 4799999853 3333345566666665532 333 4456677887777777778876 7 99988744 333
Q ss_pred -HHHHHHHhcCCCCccEEeccCCCCcccc------cceeeeccCCchhhHHHHHHHHHHHh--cCCcEEEEEEecCC--c
Q 047109 79 -GAHILAEIGSKAKIPVISLYATLPSSLT------SYSIQIDQDDEASQSQAKGIADLIRV--FKWKHVILIYEDNT--W 147 (808)
Q Consensus 79 -~~~~~~~~~~~~~iP~is~~~~~~~~ls------~~~~r~~p~~~~~~~~~~a~~~ll~~--~~w~~v~ii~~d~~--~ 147 (808)
........+...+||+|......+. .+ ..+..+.+++. ..++.+++.+.. .|.++++++..... .
T Consensus 75 ~~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~ 150 (332)
T 2rjo_A 75 ADARVIVEACSKAGAYVTTIWNKPKD-LHPWDYNPNYVAHLSYDGV---AYGEETATQLFKSMGGKGGVVALGGIFSNVP 150 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCCCTT-CCGGGGTTTEEEEEECCHH---HHHHHHHHHHHHHTTTCEEEEEEECCTTCHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCc-ccchhcccceeEEEccChH---HHHHHHHHHHHHHcCCCCeEEEEECCCCCcc
Confidence 2223334444568999998754332 11 13345566666 777888888766 69999999986532 2
Q ss_pred cccCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCC---CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 148 GSDNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSS---ETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 148 g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
.. .-.+.|.+.+++. |+.+..... . ..+.++....+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 151 ~~-~R~~Gf~~al~~~pgi~~~~~~~--~-~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 151 AI-ERKAGLDAALKKFPGIQLLDFQV--A-DWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HH-HHHHHHHHHHHTCTTEEEEEEEE--C-TTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HH-HHHHHHHHHHHhCCCcEEEeecc--C-CCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 33 4567888999998 988764322 1 12334444445444333 455544 55667788999999999974
No 93
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.00021 Score=74.35 Aligned_cols=209 Identities=13% Similarity=0.105 Sum_probs=125.3
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH-
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA- 80 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~- 80 (808)
.+||++.|.+.+.-.....+++.+.++ .+ ++++ .+.++..++....+....+++. +|.+||... .....
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~---~~---g~~l--~i~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~-~~~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMF---YN---GVSV--EIRSAGDDNSKQAEDVHYFMDE-GVDLLIISA-NEAAPM 76 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTT---SS---SCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECC-SSHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHH---cC---CcEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeC-CCHHHH
Confidence 579999997333322344455544332 21 2344 4556677888777777788865 899998754 43322
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCC--ccccCcHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNT--WGSDNIIPYL 156 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~--~g~~~~~~~~ 156 (808)
......+...++|+|......+. .. .+....+++. ..++.+++.+... |.++++++..+.. ... .-.+.|
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~-~R~~Gf 150 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILS-DK-YTAYIGADNY---EIGRSVGNYIASSLKGKGNIVELTGLSGSTPAM-ERHQGF 150 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSS-SC-SSEEEEECHH---HHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHH-HHHHHH
T ss_pred HHHHHHHHHCCCeEEEeCCCCCC-cc-eeEEEecCHH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HHHHHH
Confidence 23333444578999998654332 11 2334556666 6777788877654 8999999986532 223 446788
Q ss_pred HHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 157 FDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 157 ~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
.+.+++. |+.+..... . ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+ ..+...++.+.
T Consensus 151 ~~al~~~pg~~~~~~~~--~-~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~D~ 223 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKAD--A-AWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGIDA 223 (325)
T ss_dssp HHHHHTCTEEEEEEEEE--C-TTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEEEC
T ss_pred HHHHHhCCCCEEEeeec--C-CCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEECC
Confidence 8899988 877653221 1 1133333344444432 3467655 5556678888999999996 33444444443
No 94
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.90 E-value=0.00043 Score=70.75 Aligned_cols=207 Identities=12% Similarity=0.074 Sum_probs=125.2
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|... +.-.....+++-+.++. ++++. +.++..++....+....+++. +|.+||... .....
T Consensus 21 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~-~~~~~ 89 (293)
T 2iks_A 21 RSIGLVIPDLENTSYTRIANYLERQARQR-------GYQLL--IACSEDQPDNEMRCIEHLLQR-QVDAIIVST-SLPPE 89 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECC-SSCTT
T ss_pred cEEEEEeCCCcCcHHHHHHHHHHHHHHHC-------CCEEE--EEcCCCCHHHHHHHHHHHHHc-CCCEEEEeC-CCCCc
Confidence 47999998533 33334555665555542 23443 455666777666666777765 899888643 32222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~ 158 (808)
......+...++|+|......+. . .+..+..++. ..+..+++.+...|.++++++...... .. .-.+.|.+
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~ 162 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDR-E--HFTSVVGADQ---DDAEMLAEELRKFPAETVLYLGALPELSVSF-LREQGFRT 162 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCT-T--TCEEEEECHH---HHHHHHHHHHHTSCCSSEEEEEECTTSHHHH-HHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCccCc-C--CCCEEEecCH---HHHHHHHHHHHHCCCCEEEEEecCcccccHH-HHHHHHHH
Confidence 22334455679999997653322 1 2234455656 667778888888899999999875332 23 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
.+++.|+...... .. ..+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++-+
T Consensus 163 ~l~~~g~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 163 AWKDDPREVHFLY--AN-SYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHTTCCCCEEEEE--ES-SSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHcCCCccEEE--cC-CCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999987433221 11 11334444455555443 456544 45667788899999999985444 3344433
No 95
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.89 E-value=0.00045 Score=71.04 Aligned_cols=212 Identities=9% Similarity=-0.053 Sum_probs=131.2
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||++.|..+ +.-.....+++-+.++.+ +++.+. .++..++..-.+....+++. ++.+||-.........
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~-~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~ 76 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQALN-------VTVEYR-GAAQYDIQEQITVLEQAIAK-NPAGIAISAIDPVELT 76 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHHHT-------CEEEEE-ECSSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTTTH
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHHcC-------CEEEEe-CCCcCCHHHHHHHHHHHHHh-CCCEEEEcCCCHHHHH
Confidence 7899998654 333455667777766643 344432 46777888888888888876 8888885330333223
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCCccccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNTWGSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~~g~~~~~~~~~~~ 159 (808)
.....+...+||+|......+. .. .+..+.+++. ..++.+++.+... |.++++++..........-.+.|.+.
T Consensus 77 ~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~d~~---~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~ 151 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLFDSGAPD-SH-AHSFLGTNNY---NAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKET 151 (305)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-SC-CSCEEECCHH---HHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCCCCC-Cc-eeEEECcCHH---HHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHH
Confidence 3334445569999998765443 11 2344566666 7788888888777 99999999855422111345778888
Q ss_pred hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 160 LHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
+++.|..+........ ..+.+.....+.++.+. ++++ |++.+...+..+++++++.|+. .+...++.+.
T Consensus 152 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~-~di~vig~d~ 222 (305)
T 3g1w_A 152 LEAEFPAIEVIAVEDG-RGDSLHSRRVAHQLLEDYPNLAG-IFATEANGGVGVGDAVRLESRA-GEIQIISFDT 222 (305)
T ss_dssp HHHHCTTEEEEEEEEC-TTCHHHHHHHHHHHHHHCTTEEE-EEESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHhhCCCCEEEEEecC-CCCHHHHHHHHHHHHHhCCCceE-EEECCCcchhhHHHHHHhcCCC-CCeEEEEeCC
Confidence 8887655443322222 22344444445444332 4454 4456677788999999999985 4445555443
No 96
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.88 E-value=0.00011 Score=74.47 Aligned_cols=204 Identities=10% Similarity=-0.017 Sum_probs=113.1
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|.-. +.-.....+++-+.++. ++++ .+.++..++....+....+++. ++.+||... .....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~- 68 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-------RYDL--ALFPILSLARLKRYLENTTLAY-LTDGLILAS-YDLTE- 68 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-------TCEE--EECCCCSCCCCC---------C-CCSEEEEES-CCCC--
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCchhhHHHHHHHHHhC-CCCEEEEec-CCCCH-
Confidence 4899998533 33223444544444332 2343 4456555655555555566655 888888643 32222
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC-C---ccc-c-CcHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN-T---WGS-D-NIIPY 155 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~-~---~g~-~-~~~~~ 155 (808)
.....+...++|+|......+. +..+...+. ..++.+++.+...|.++++++..+. . ... . .-.+.
T Consensus 69 ~~~~~~~~~~iPvV~~~~~~~~-----~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~g 140 (276)
T 2h0a_A 69 RFEEGRLPTERPVVLVDAQNPR-----YDSVYLDNR---LGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAG 140 (276)
T ss_dssp -----CCSCSSCEEEESSCCTT-----SEEEEECSH---HHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeccCCC-----CCEEEEccH---HHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHH
Confidence 2334455679999997654321 334556666 7778888888888999999998664 3 222 1 23567
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
|.+.+++.|+.+.....+.. ..+..+-...+.++.+. .+++|+ +++...+..+++++++.|+..++-+.++
T Consensus 141 f~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 141 FQEALKEAGRPFSPDRLYIT-RHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHHTTCCCCGGGEEEE-CSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHHcCCCCChHHeeec-CCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 88889888876431101111 11333444455555443 467655 6677778899999999998544444433
No 97
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.88 E-value=0.00098 Score=67.65 Aligned_cols=206 Identities=12% Similarity=0.097 Sum_probs=123.5
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChhH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~~ 79 (808)
-+||++.|... +.-.....+++.+.++.+ +++ .+.++..++....+....+++. +|.+||- |. .+..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-------~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~-~~~~ 70 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELG-------YKI--IVEDSQNDSSKELSNVEDLIQQ-KVDVLLINPV-DSDA 70 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCS-STTT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcC-------cEE--EEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-chhh
Confidence 37999998644 334455667666666542 333 4456667787777777777765 8988775 43 3332
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc-C-CcEEEEEEecCCc--cccCcHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF-K-WKHVILIYEDNTW--GSDNIIPY 155 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~-~-w~~v~ii~~d~~~--g~~~~~~~ 155 (808)
.......+...++|+|......+. .. .+......+. ..++.+++.|... | .++++++...... .. .-.+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~-~R~~G 144 (283)
T 2ioy_A 71 VVTAIKEANSKNIPVITIDRSANG-GD-VVCHIASDNV---KGGEMAAEFIAKALKGKGNVVELEGIPGASAAR-DRGKG 144 (283)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-SC-CSEEEEECHH---HHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHH-HHHHH
T ss_pred hHHHHHHHHHCCCeEEEecCCCCC-cc-eeEEEecChH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HHHHH
Confidence 222233345568999998653322 11 2223445555 5677777877655 5 8999999854322 22 34577
Q ss_pred HHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 156 LFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 156 ~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
|.+.+++. |+.+.....-.. +.++-...++++.+ ..+++ |++.+...|..+++++++.|+ .+...++-+
T Consensus 145 f~~al~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 145 FDEAIAKYPDIKIVAKQAADF---DRSKGLSVMENILQAQPKIDA-VFAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHHHHTTCTTEEEEEEEECTT---CHHHHHHHHHHHHHHCSCCCE-EEESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHHHHhCCCCEEEeeccCCC---CHHHHHHHHHHHHHhCCCccE-EEECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 88899888 887654222111 33333344444433 23454 455667778899999999997 454444444
No 98
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.87 E-value=0.0005 Score=69.91 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=121.6
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|.. .+.-.....+++-+.++. ++++. +.++..++....+....+++. +|.+||... .....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~ 77 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKN-------GYRIL--LCNTESDLARSRSCLTLLSGK-MVDGVITMD-ALSEL 77 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHTHHHHTT-CCSEEEECC-CGGGH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEeC-CCCCh
Confidence 4799999953 333445556666665542 24443 445666776666666666655 899988754 33222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 158 (808)
..+..+ . .++|+|......+. . .+..+...+. ..++.+++.+...|.++++++..... ... .-.+.|.+
T Consensus 78 ~~~~~l-~-~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~gf~~ 148 (285)
T 3c3k_A 78 PELQNI-I-GAFPWVQCAEYDPL-S--TVSSVSIDDV---AASEYVVDQLVKSGKKRIALINHDLAYQYAQ-HRESGYLN 148 (285)
T ss_dssp HHHHHH-H-TTSSEEEESSCCTT-S--SSCEEECCHH---HHHHHHHHHHHHTTCCCEEEEECCTTSHHHH-HHHHHHHH
T ss_pred HHHHHH-h-cCCCEEEEccccCC-C--CCCEEEEChH---HHHHHHHHHHHHcCCCeEEEEeCCCccccHH-HHHHHHHH
Confidence 333344 3 79999998654322 1 2233455555 66777888887779999999986543 223 34577888
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHH--hcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSM--LKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.+++.|+.+. ...-.. +.++-...+.+ +.+. .+++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 149 ~l~~~g~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 149 RLKFHGLDYS-RISYAE---NLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHTCCCC-EEEECS---SSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCce-EeecCC---ChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 8888887643 111111 22233344444 4333 466655 456777889999999999854443333
No 99
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.85 E-value=0.0013 Score=67.30 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=125.0
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
-+||++...+.++=....+|++-++ ++.| ..+.++.+.+.|+.+++.+..+...++.+. +|.+||... +.. ..
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l---~~~g-y~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~-~~~-~~ 75 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGL---AEEG-YKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIA-TPA-AQ 75 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHH---HHTT-CCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEES-HHH-HH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHH---HHcC-CCCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECC-cHH-HH
Confidence 4799884444443223444554443 3333 234578888889999999888888888765 899999765 432 22
Q ss_pred HHHHhcCCCCccEEeccCCCCcccc---------c-ceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCCc-c
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLT---------S-YSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNTW-G 148 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls---------~-~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~~-g 148 (808)
.+... ..++|+|..+..+|. .. . .+.... +. ..+...++++... |.+++++++.+... +
T Consensus 76 ~~~~~--~~~iPvV~~~~~~~~-~~~~v~~~~~~~~~~~gv~--~~---~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~ 147 (295)
T 3lft_A 76 GLASA--TKDLPVIMAAITDPI-GANLVKDLKKPGGNVTGVS--DH---NPAQQQVELIKALTPNVKTIGALYSSSEDNS 147 (295)
T ss_dssp HHHHH--CSSSCEEEESCSCTT-TTTSCSCSSCCCSSEEEEE--EC---CCHHHHHHHHHHHCTTCCEEEEEEETTCHHH
T ss_pred HHHHc--CCCCCEEEEeccChh-hcCccccccCCCCcEEEEE--CC---ccHHHHHHHHHHhCCCCcEEEEEeCCCCcch
Confidence 33222 468999987755443 21 1 232222 22 3356666777766 89999999977542 3
Q ss_pred ccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 047109 149 SDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl 219 (808)
. .-.+.+++++++.|+.+...... +.++....++++. .++++|++..+ ..+...++++.+.+.
T Consensus 148 ~-~r~~g~~~al~~~gi~~~~~~~~-----~~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 148 K-TQVEEFKAYAEKAGLTVETFAVP-----STNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp H-HHHHHHHHHHHHTTCEEEEEEES-----SGGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHcCCEEEEEecC-----CHHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 4 45688999999999987654322 2345666777776 46888777554 455566777777774
No 100
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.84 E-value=0.0006 Score=69.61 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=124.6
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++.+ ++ +.+.++..++....+....+++. ++.+||-........
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~--~~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANK-------YE--ALVATSQNSRISEREQILEFVHL-KVDAIFITTLDDVYI 78 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTT-------CE--EEEEECSSCHHHHHHHHHHHHHT-TCSEEEEECSCTTTT
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcC-------CE--EEEECCCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHH
Confidence 47999999643 333345556665555442 33 44556677888777788888876 888887533033322
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh-c-CCc-----EEEEEEecCC--ccccC
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV-F-KWK-----HVILIYEDNT--WGSDN 151 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~-~-~w~-----~v~ii~~d~~--~g~~~ 151 (808)
......+...+||+|......+. .. .+..+.+++. ..++.+++.+.. . |-+ +++++..... ... .
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~-~ 152 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIRS-DA-VVSSITSNNQ---MIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTN-E 152 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCCC-TT-CSEEEEECHH---HHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHH-H
T ss_pred HHHHHHHHHcCCCEEEecCCCCC-Cc-ceeEEecCHH---HHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHH-H
Confidence 23334455569999998764433 11 3344556666 777777877766 5 666 9999985432 222 4
Q ss_pred cHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 152 IIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 152 ~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
-.+.|.+.+++. |+.+.....-. .+.++....+.++.+ ..+++| ++.+...+..+++++++.|+.
T Consensus 153 R~~gf~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 153 RHRGFLKGIENEPTLSIVDSVSGN---YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEECT---TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCcEEeeeccCC---CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC
Confidence 567888999999 98876543222 234444444554443 345554 456677788999999999983
No 101
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.81 E-value=0.00053 Score=69.13 Aligned_cols=206 Identities=12% Similarity=0.015 Sum_probs=127.8
Q ss_pred EEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|.... .-.....+++-+.++. ++++. +.++..++..-.+....+++. ++.+||-.. ......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~~~~~ 72 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARAR-------GYQLL--IASSDDQPDSERQLQQLFRAR-RCDALFVAS-CLPPED 72 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECC-CCCSSC
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHC-------CCEEE--EEeCCCCHHHHHHHHHHHHHc-CCCEEEEec-CccccH
Confidence 69999997443 3334555666555543 23443 445666777777777777766 888888643 321112
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~~ 159 (808)
.....+...++|+|......+. . .+......+. ..++.+++.+...|.++++++...... .. .-.+.|.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~~ 145 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLDP-A--HFCSVISDDR---DASRQLAASLLSSAPRSIALIGARPELSVSQ-ARAGGFDEA 145 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCCT-T--TCEEEEECHH---HHHHHHHHHHHTTCCSEEEEEEECTTSHHHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEccCCCc-c--ccCEEEEchH---HHHHHHHHHHHHCCCcEEEEEecCCCCccHH-HHHHHHHHH
Confidence 2233444569999998754333 1 2233455666 777888888888899999999875432 23 456888999
Q ss_pred hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--C-CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 160 LHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--S-ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~-~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
+++.|+.+.....-.. +.++....+.++.+ . .+++| ++.+...+..+++++++.|+...+...++-+
T Consensus 146 l~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 146 LQGYTGEVRRYQGEAF---SRECGQRLMQQLIDDLGGLPDAL-VTTSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTTCCSEEEEEEESSS---SHHHHHHHHHHHHHHHTSCCSEE-EESSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHHcCCChheeecCCC---CHHHHHHHHHHHHhcCCCCCcEE-EEeCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 9999987654332222 33343344444432 2 46765 4566778889999999999733334444444
No 102
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.79 E-value=0.00028 Score=73.86 Aligned_cols=208 Identities=12% Similarity=0.034 Sum_probs=129.1
Q ss_pred EEEEEEec---CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 3 HVGVILDM---RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 3 ~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
+||+++|. +.++-.....+++-+.++.+ +++ .+.++..++..-.+....+++. ++.+||-.. ....
T Consensus 63 ~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~~~ 131 (338)
T 3dbi_A 63 TLGLVVTNTLYHGIYFSELLFHAARMAEEKG-------RQL--LLADGKHSAEEERQAIQYLLDL-RCDAIMIYP-RFLS 131 (338)
T ss_dssp EEEEEECTTTTSTTHHHHHHHHHHHHHHHTT-------CEE--EEEECTTSHHHHHHHHHHHHHT-TCSEEEECC-SSSC
T ss_pred EEEEEecCCcccChhHHHHHHHHHHHHHHCC-------CEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEeC-CCCC
Confidence 69999996 33433345556655555432 343 4556667777777777777765 899888644 3333
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~ 157 (808)
...+...+...++|+|......+. . .+.....++. ..+..+++.+...|.++++++..... ... .-.+.|.
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~ 204 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRLRK-N--SSHSVWCDHK---QTSFNAVAELINAGHQEIAFLTGSMDSPTSI-ERLAGYK 204 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSS-S--GGGEECBCHH---HHHHHHHHHHHHTTCCSEEEECCCTTCHHHH-HHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCCCCC-C--CCCEEEEChH---HHHHHHHHHHHHCCCCEEEEEeCCCCCccHH-HHHHHHH
Confidence 345566777788999987654333 1 1223455555 66777888888889999999976432 222 4467888
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe-EEEEeC
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGY-SWIVTA 230 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~-~~i~~~ 230 (808)
+.+++.|+.+........ ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++- ..++-|
T Consensus 205 ~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 205 DALAQHGIALNEKLIANG-KWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHTTCCCCGGGEECC-CSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHCCCCCCcceEEeC-CCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999876532111121 2233333344444432 4566654 566777889999999999864443 344333
No 103
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.77 E-value=0.00019 Score=73.28 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=110.7
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSR-DSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
-+||++.|.. .+.-.....+++.+.++. ++++. +. ++..++....+....+++. ++.+||... ....
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~ 77 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKN-------GYNLI--IVYSGSADPEEQKHALLTAIER-PVMGILLLS-IALT 77 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTT-------TCEEE--EEC----------CHHHHHHSS-CCSEEEEES-CC--
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCeEE--EEeCCCCCHHHHHHHHHHHHhc-CCCEEEEec-ccCC
Confidence 4799999853 333334455555554432 23443 34 5555665555555666655 899888643 3222
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC--CccccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN--TWGSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~~~ 157 (808)
...+ ..+...++|+|......+. .+..+..++. ..++.+++.+...|.++++++..+. .... .-.+.|.
T Consensus 78 ~~~~-~~l~~~~iPvV~~~~~~~~----~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~ 148 (290)
T 3clk_A 78 DDNL-QLLQSSDVPYCFLSMGFDD----DRPFISSDDE---DIGYQATNLLINEGHRQIGIAGIDQYPYTGR-KRLAGYK 148 (290)
T ss_dssp --CH-HHHHCC--CEEEESCC--C----CSCEEECCHH---HHHHHHHHHHHTTTCCSEEEESCCCCTTTHH-HHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEcCCCCC----CCCEEEeChH---HHHHHHHHHHHHcCCCEEEEEeCCCCCcchH-HHHHHHH
Confidence 2222 3344579999998654333 1334455666 6777888888878999999998653 2233 4567888
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHMSHALASHLFLNAKKLGMMSKG 223 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~l~~a~~~gl~~~~ 223 (808)
+.+++.|+.+.....+.. ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 149 ~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 149 KALKEANIAINQEWIKPG-DYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHTTCCCCGGGEECC-CSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcCCCCCcceEEcC-CCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 999998876431111111 1133344445555543 4566655 45667788899999999985443
No 104
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.77 E-value=0.00057 Score=69.70 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=126.1
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++. ++++. +.++..++....+....+++. +|.+||-.. .....
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~~~~ 85 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMY-------KYNII--LSNSDQNMEKELHLLNTMLGK-QVDGIVFMG-GNITD 85 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECC-SCCCH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEec-CCCCH
Confidence 47999998633 33334556666655542 23443 446667777666677777765 899888643 22222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC-C--ccccCcHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN-T--WGSDNIIPYLF 157 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~-~--~g~~~~~~~~~ 157 (808)
..+..+ ...++|+|......+. . .+......+. ..++.+++.+...|.++++++.... . ... .-.+.|.
T Consensus 86 ~~~~~l-~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~Gf~ 157 (289)
T 2fep_A 86 EHVAEF-KRSPVPIVLAASVEEQ-E--ETPSVAIDYE---QAIYDAVKLLVDKGHTDIAFVSGPMAEPINRS-KKLQGYK 157 (289)
T ss_dssp HHHHHH-HHSSSCEEEESCCCTT-C--CSCEEECCHH---HHHHHHHHHHHHTTCSSEEEEESCTTSHHHHT-THHHHHH
T ss_pred HHHHHH-HhcCCCEEEEccccCC-C--CCCEEEECcH---HHHHHHHHHHHHCCCCeEEEEeCCccccccHH-HHHHHHH
Confidence 233333 3568999998654322 1 2233455656 6777888888778999999998654 2 233 5578899
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
+.+++.|+.+.....+.. ..+.++-...++++.+. .+++|+ +.+...+..+++++++.|+..++ ...++-+
T Consensus 158 ~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 158 RALEEANLPFNEQFVAEG-DYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHTTCCCCGGGEEEC-CSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHcCCCCChheEeeC-CCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999998876432111111 11333444455555443 456654 45667788999999999985443 3344333
No 105
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.77 E-value=0.00031 Score=71.76 Aligned_cols=203 Identities=10% Similarity=0.050 Sum_probs=122.9
Q ss_pred eEEEEEEec------CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCC
Q 047109 2 VHVGVILDM------RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEM 75 (808)
Q Consensus 2 i~IG~i~~~------~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~ 75 (808)
-+||+++|. +.+.-.....+++-+.++.+ +++ .+.++..++..-.+....+.+ .++.+||-..
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~- 77 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEG-------YAL--YMSTGETEEEIFNGVVKMVQG-RQIGGIILLY- 77 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTT-------CEE--EECCCCSHHHHHHHHHHHHHT-TCCCEEEESC-
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcC-------CEE--EEEeCCCCHHHHHHHHHHHHc-CCCCEEEEeC-
Confidence 379999997 33333445556665554432 333 445665555544444444544 4899988543
Q ss_pred ChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcH
Q 047109 76 TPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNII 153 (808)
Q Consensus 76 ~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~ 153 (808)
..... .....+...++|+|......+. .. .+.....+.. ..++.+++.+...|.++++++...... .. .-.
T Consensus 78 ~~~~~-~~~~~l~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~ 150 (292)
T 3k4h_A 78 SREND-RIIQYLHEQNFPFVLIGKPYDR-KD-EITYVDNDNY---TAAREVAEYLISLGHKQIAFIGGGSDLLVTR-DRL 150 (292)
T ss_dssp CBTTC-HHHHHHHHTTCCEEEESCCSSC-TT-TSCEEECCHH---HHHHHHHHHHHHTTCCCEEEEESCTTBHHHH-HHH
T ss_pred CCCCh-HHHHHHHHCCCCEEEECCCCCC-CC-CCCEEEECcH---HHHHHHHHHHHHCCCceEEEEeCcccchhHH-HHH
Confidence 22222 2334455569999998765433 21 2344556666 777888888888899999999865432 22 346
Q ss_pred HHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe
Q 047109 154 PYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGY 224 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~ 224 (808)
+.|.+.+++.|+.+........ ..+.......+.++.+. .+++|+ +.+...+..+++++++.|+..++-
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~d 221 (292)
T 3k4h_A 151 AGMSDALKLADIVLPKEYILHF-DFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKD 221 (292)
T ss_dssp HHHHHHHHHTTCCCCGGGEEEC-CSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHHHcCCCCChheEEec-CCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCe
Confidence 7888999998876432111111 22344444555555443 456554 566777889999999999854443
No 106
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.74 E-value=0.0028 Score=65.13 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=122.7
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|... +.-.....+++-+.++. ++ +++.+.++..++....+....+++. ++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~-~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA-------PD-VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC-------TT-EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc-------CC-eEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCcchh
Confidence 37999998643 33334455555554433 22 2445567777887777777777765 898888643033222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccc----cceeeeccCCchhhHHHHHHHHHHHh------------cCCcEEEEEEec
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLT----SYSIQIDQDDEASQSQAKGIADLIRV------------FKWKHVILIYED 144 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls----~~~~r~~p~~~~~~~~~~a~~~ll~~------------~~w~~v~ii~~d 144 (808)
......+...++|+|......+. .. +.+......+. ..++.+++.+.. .|.++++++...
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~V~~d~~---~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~ 149 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSR-KALDSYDKAYYVGTDSK---ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 149 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCH-HHHHTCTTEEEEECCHH---HHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECS
T ss_pred HHHHHHHHHCCCcEEEecCCCCc-ccccccCccEEEecCHH---HHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcC
Confidence 33334455679999998764332 11 13445556666 667777777755 678899999865
Q ss_pred CC--ccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC----CCeEEEEEcCHHHHHHHHHHHHHcC
Q 047109 145 NT--WGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS----ETKVFVVHMSHALASHLFLNAKKLG 218 (808)
Q Consensus 145 ~~--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~~l~~a~~~g 218 (808)
.. ... .-.+.|.+.+++.|+.+.....+.. ..+...-...++++.+. .+++|+ +.+...+..+++++++.|
T Consensus 150 ~~~~~~~-~R~~gf~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 150 PGHPDAE-ARTTYVIKELNDKGIKTEQLQLDTA-MWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp TTCHHHH-HHHHHHHHHHHHTTCCEEEEEEEEC-TTCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred CCCccHH-HHHHHHHHHHHhcCCceEEEEEecC-CCCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhHHHHHHHHHHcC
Confidence 32 223 4567888999999876543322222 22334444455555433 456654 466777888999999998
No 107
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.74 E-value=0.00022 Score=74.44 Aligned_cols=199 Identities=15% Similarity=0.090 Sum_probs=121.5
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
.+||+++|..+ +.-.....+++.+.++. ++++. +.++..++....+....+++. +|.+|| .. .....
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI-~~-~~~~~ 128 (330)
T 3ctp_A 61 KTIGLMVPNISNPFFNQMASVIEEYAKNK-------GYTLF--LCNTDDDKEKEKTYLEVLQSH-RVAGII-AS-RSQCE 128 (330)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEE-EE-TCCCS
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEE-EC-CCCCH
Confidence 47999998643 33444556666665542 24444 446667777766777777765 899988 43 32221
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 158 (808)
..+...++|+|......+. .+.....++. ..+..+++.+...|.++++++..... ... .-.+.|.+
T Consensus 129 ----~~l~~~~iPvV~~~~~~~~----~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~ 196 (330)
T 3ctp_A 129 ----DEYANIDIPVVAFENHILD----NIITISSDNY---NGGRMAFDHLYEKGCRKILHIKGPEVFEATE-LRYKGFLD 196 (330)
T ss_dssp ----GGGTTCCSCEEEESSCCCT----TSCEEEECHH---HHHHHHHHHHHHTTCCSEEEEECCTTCHHHH-HHHHHHHH
T ss_pred ----HHHHhcCCCEEEEeccCCC----CCCEEEeCHH---HHHHHHHHHHHHCCCCeEEEEeCCccCccHH-HHHHHHHH
Confidence 2345679999998654331 1223445555 66677888887789999999986543 233 45678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.+++.|+.+. ...+.. ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 197 al~~~g~~~~-~~~~~~-~~~~~~~~~~~~~ll~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 197 GARAKDLEID-FIEFQH-DFQVKMLEEDINSMKDIVNYDGIF-VFNDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHTTCCCE-EEECSS-SCCGGGGGCCCTTGGGGGGSSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCcc-eeEEcC-CCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 9999998765 322222 1122221222333332 3567655 455667888999999999854443333
No 108
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.73 E-value=0.00038 Score=71.49 Aligned_cols=211 Identities=7% Similarity=-0.017 Sum_probs=125.2
Q ss_pred eEEEEEEecC--CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 2 VHVGVILDMR--SWAGKISNSCISMAISDFYALNTHYKTRLVLHSR-DSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
-+||+++|.. .+.-.....+++-+.++.+ ++.+.+... ++..++..-.+....+++. ++.+||-......
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~ 81 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYS------DFNISANITHYDPYDYNSFVATSQAVIEE-QPDGVMFAPTVPQ 81 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTG------GGCEEEEEEEECSSCHHHHHHHHHHHHTT-CCSEEEECCSSGG
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHH------hCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEEECCCChH
Confidence 4799999984 4444455666666666542 235555544 3456777666667777765 8988885430333
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC--cEEEEEEecC------Ccccc
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW--KHVILIYEDN------TWGSD 150 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w--~~v~ii~~d~------~~g~~ 150 (808)
........+...+||+|......+. .. .+-.+.+... ..++.+++.+...|. ++++++..+. ....
T Consensus 82 ~~~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~- 155 (304)
T 3gbv_A 82 YTKGFTDALNELGIPYIYIDSQIKD-AP-PLAFFGQNSH---QSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQE- 155 (304)
T ss_dssp GTHHHHHHHHHHTCCEEEESSCCTT-SC-CSEEEECCHH---HHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHH-
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCC-CC-ceEEEecChH---HHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHH-
Confidence 3333344455569999998765443 11 2334456666 778888888888777 9999998431 1222
Q ss_pred CcHHHHHHhhhcCCcEE--EEEEecCCC-CCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 151 NIIPYLFDSLHDNDIDI--ARRITISMS-SNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i--~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.-.+.|.+.+++.|..+ .....-..+ ......+...+++ ...+++|+...+. +..+++++++.|+ .+...+
T Consensus 156 ~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~vi 229 (304)
T 3gbv_A 156 SREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFRE--HPDVKHGITFNSK--VYIIGEYLQQRRK--SDFSLI 229 (304)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHH--CTTCCEEEESSSC--THHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHh--CCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcEEE
Confidence 45678888888877543 322111110 1111222222222 2356776665544 7889999999997 555555
Q ss_pred EeCc
Q 047109 228 VTAS 231 (808)
Q Consensus 228 ~~~~ 231 (808)
+-+.
T Consensus 230 g~d~ 233 (304)
T 3gbv_A 230 GYDL 233 (304)
T ss_dssp EESC
T ss_pred EeCC
Confidence 5443
No 109
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.73 E-value=0.00068 Score=68.47 Aligned_cols=204 Identities=10% Similarity=0.007 Sum_probs=121.5
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|... +.-.....+++-+.++. ++++ .+.++..++....+....+++. +|.+||-.. .....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~-~~~~~ 72 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKA-------GYQL--LLGYSDYSIEQEEKLLSTFLES-RPAGVVLFG-SEHSQ 72 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHT-------SCEE--CCEECTTCHHHHHHHHHHHHTS-CCCCEEEES-SCCCH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHC-------CCEE--EEEcCCCCHHHHHHHHHHHHhc-CCCEEEEeC-CCCCH
Confidence 37999998633 33334555666555442 2333 3345566777666666677765 788777532 22112
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~ 158 (808)
..+. .+...++|+|......+. ..+..+..++. ..++.+++.+...|.++++++..+... .. .-.+.|.+
T Consensus 73 ~~~~-~l~~~~iPvV~~~~~~~~---~~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~ 144 (275)
T 3d8u_A 73 RTHQ-LLEASNTPVLEIAELSSK---ASYLNIGVDHF---EVGKACTRHLIEQGFKNVGFIGARGNHSTLQ-RQLHGWQS 144 (275)
T ss_dssp HHHH-HHHHHTCCEEEESSSCSS---SSSEEECBCHH---HHHHHHHHHHHTTTCCCEEEEECSCSSHHHH-HHHHHHHH
T ss_pred HHHH-HHHhCCCCEEEEeeccCC---CCCCEEEEChH---HHHHHHHHHHHHCCCCeEEEEcCCCCCchHH-HHHHHHHH
Confidence 2222 334468999997653222 12334555656 667778888877899999999865432 23 44678888
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSW 226 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~ 226 (808)
.+++.|+.+........ ..+.++....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.
T Consensus 145 ~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~ 212 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHE-APSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIA 212 (275)
T ss_dssp HHHHTTCCCCCEEECSS-CCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHcCCCCCccEEEeC-CCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceE
Confidence 99998875432222222 22334444455554433 466655 55667788999999999985444333
No 110
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.69 E-value=0.00043 Score=72.27 Aligned_cols=205 Identities=14% Similarity=0.069 Sum_probs=122.5
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|.. .+.......+++-+.++. ++++. +.++..++....+....+++. ++.+||... .....
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~ 132 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMY-------KYNMI--LANSDNDVEKEEKVLETFLSK-QVDGIVYMG-SSLDE 132 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECS-SCCCH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEECCCChHHHHHHHHHHHhC-CCCEEEEeC-CCCCH
Confidence 4699999853 333444556666665542 23443 346666777666666677765 899888643 32222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 158 (808)
..+..+ ...++|+|......+. . .+....+++. ..+..+++.+...|.++++++..+.. ... .-.+.|.+
T Consensus 133 ~~~~~l-~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~ 204 (332)
T 2o20_A 133 KIRTSL-KNSRTPVVLVGTIDGD-K--EIPSVNIDYH---LAAYQSTKKLIDSGNKKIAYIMGSLKDVENT-ERMVGYQE 204 (332)
T ss_dssp HHHHHH-HHHCCCEEEESCCCTT-S--CSCEEECCHH---HHHHHHHHHHHHTTCSSEEEECSCTTSHHHH-HHHHHHHH
T ss_pred HHHHHH-HhCCCCEEEEccccCC-C--CCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEeCCcccccHH-HHHHHHHH
Confidence 223333 3568999998654322 1 2233455555 66777888887789999999986532 223 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.+++.|+.+.....+.. ..+.++-...+.++.+..+++|+. .+...+..+++++++.|+.-++-+-+
T Consensus 205 al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2o20_A 205 ALLEANIEFDENLVFEG-NYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEI 271 (332)
T ss_dssp HHHHTTCCCCGGGEECS-CCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCChhhEEeC-CCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEE
Confidence 99999876432111111 113333333344433227777654 56777889999999999864443333
No 111
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.66 E-value=0.0004 Score=72.46 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=120.8
Q ss_pred eEEEEEEec-CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDM-RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~-~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|. +.+.-.....+++-+.++. ++++. +.++..++....+....+++. ++.+||... .....
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~ 129 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMY-------KYNII--LSNSDQNQDKELHLLNNMLGK-QVDGIIFMS-GNVTE 129 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHH-------TCEEE--EEECCSHHHHHHHHHHHTSCC-SSCCEEECC-SSCCH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCChHHHHHHHHHHHhC-CCcEEEEec-CCCCH
Confidence 479999985 3444445667777766653 23443 345555666555556666654 898888643 32222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC-C--ccccCcHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN-T--WGSDNIIPYLF 157 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~-~--~g~~~~~~~~~ 157 (808)
..+ ..+...++|+|......+. . .+.....++. ..+..+++.+...|.++++++..+. . ... .-.+.|.
T Consensus 130 ~~~-~~l~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~Gf~ 201 (332)
T 2hsg_A 130 EHV-EELKKSPVPVVLAASIEST-N--QIPSVTIDYE---QAAFDAVQSLIDSGHKNIAFVSGTLEEPINHA-KKVKGYK 201 (332)
T ss_dssp HHH-HHHTTSSSCEEEESCCCSC-T--TSCEEEECHH---HHHHHHHHHHHTTTCSCEEEEESCTTSHHHHT-THHHHHH
T ss_pred HHH-HHHHhCCCCEEEEccccCC-C--CCCEEEEChH---HHHHHHHHHHHHCCCCEEEEEeCCcccCccHH-HHHHHHH
Confidence 233 3345679999998654322 1 2233455555 6677788888788999999998654 2 233 5578899
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
+.+++.|+.+.....+.. ..+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 202 ~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 202 RALTESGLPVRDSYIVEG-DYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHTTTCCCCGGGEEEC-CSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCChheEEeC-CCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCC
Confidence 999999876431111111 11333333444444332 567665 56677788999999999984
No 112
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.64 E-value=0.00093 Score=69.92 Aligned_cols=205 Identities=7% Similarity=0.018 Sum_probs=121.6
Q ss_pred eEEEEEEecC-CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMR-SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||++.|.. .+.-.....+++-+.++. ++++. +.++..++....+....+++. ++.+||-.. .....
T Consensus 59 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~ 127 (340)
T 1qpz_A 59 KSIGLLATSSEAAYFAEIIEAVEKNCFQK-------GYTLI--LGNAWNNLEKQRAYLSMMAQK-RVDGLLVMC-SEYPE 127 (340)
T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECC-SCCCH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHcC-CCCEEEEeC-CCCCh
Confidence 3799999864 333444556666665542 23444 356667777666666667665 899888533 22111
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 158 (808)
.....+....++|+|......+. .. .......++. ..+..+++.+...|.++++++..... ... .-.+.|.+
T Consensus 128 ~~~~~l~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~-~R~~Gf~~ 201 (340)
T 1qpz_A 128 PLLAMLEEYRHIPMVVMDWGEAK-AD-FTDAVIDNAF---EGGYMAGRYLIERGHREIGVIPGPLERNTGA-GRLAGFMK 201 (340)
T ss_dssp HHHHHHHTTTTSCEEEEEESSCC-CS-SSEEEECCHH---HHHHHHHHHHHHHTCCCEEEECCCTTSHHHH-HHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEecccCC-CC-CCCEEEECHH---HHHHHHHHHHHHCCCCEEEEEeCCCccccHH-HHHHHHHH
Confidence 12222333468999987653322 11 1224555555 66777888887779999999975432 223 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYS 225 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~ 225 (808)
.+++.|+.+.....+.. ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+.-++-+
T Consensus 202 al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di 268 (340)
T 1qpz_A 202 AMEEAMIKVPESWIVQG-DFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQDV 268 (340)
T ss_dssp HHHHTTCCCCGGGBCCC-CSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHCCCCCChhheEeC-CCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 99999876432111111 1133333344555543 3566655 4567778899999999998644433
No 113
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.64 E-value=0.00037 Score=71.04 Aligned_cols=208 Identities=9% Similarity=0.028 Sum_probs=122.6
Q ss_pred eEEEEEEec-----CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 2 VHVGVILDM-----RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 2 i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
-+||+++|. +.+.-.....+++-+.++. ++++ .+.++..++....+....+++. +|.+||... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~ 73 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-------NYFV--LPFPFSEDRSQIDIYRDLIRSG-NVDGFVLSS-I 73 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-------TCEE--EECCCCSSTTCCHHHHHHHHTT-CCSEEEECS-C
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHc-------CCEE--EEEeCCCchHHHHHHHHHHHcC-CCCEEEEee-c
Confidence 479999996 3444445566666666543 2344 3445555555445555566655 899888643 2
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHH
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIP 154 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~ 154 (808)
......+. .+...++|+|......+. . .+......+. ..++.+++.+...|.++++++..... ... .-.+
T Consensus 74 ~~~~~~~~-~l~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~ 145 (287)
T 3bbl_A 74 NYNDPRVQ-FLLKQKFPFVAFGRSNPD-W--DFAWVDIDGT---AGTRQAVEYLIGRGHRRIAILAWPEDSRVGN-DRLQ 145 (287)
T ss_dssp CTTCHHHH-HHHHTTCCEEEESCCSTT-C--CCCEEEECHH---HHHHHHHHHHHHHTCCCEEEEECCTTCHHHH-HHHH
T ss_pred CCCcHHHH-HHHhcCCCEEEECCcCCC-C--CCCEEEeccH---HHHHHHHHHHHHCCCCeEEEEeCCcccccHH-HHHH
Confidence 22222222 334468999998654322 1 2233455555 66777888887779999999986532 223 4467
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-C---CCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-S---ETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVT 229 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 229 (808)
.|.+.+++.|+.+.....+.. ..+.++-...++++.+ . .+++|+ +.+...+..+++++++.|+..++ ...++-
T Consensus 146 Gf~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 146 GYLEAMQTAQLPIETGYILRG-EGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHHTTCCCCGGGEEEC-CSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHHcCCCCChhhEEeC-CCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 888899998876432111111 1133344445555543 3 466655 45677788999999999985443 334444
Q ss_pred C
Q 047109 230 A 230 (808)
Q Consensus 230 ~ 230 (808)
+
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.63 E-value=0.0013 Score=67.00 Aligned_cols=200 Identities=12% Similarity=0.089 Sum_probs=120.2
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
+||++++.+.+.-.....+++-+.++. ++++.+...+. ++. -.+....+++. +|.+||-.. .......
T Consensus 14 ~Igvi~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~--~~~-~~~~~~~l~~~-~vdgiIi~~-~~~~~~~ 81 (289)
T 3k9c_A 14 LLGVVFELQQPFHGDLVEQIYAAATRR-------GYDVMLSAVAP--SRA-EKVAVQALMRE-RCEAAILLG-TRFDTDE 81 (289)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHT-------TCEEEEEEEBT--TBC-HHHHHHHHTTT-TEEEEEEET-CCCCHHH
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHC-------CCEEEEEeCCC--CHH-HHHHHHHHHhC-CCCEEEEEC-CCCCHHH
Confidence 699999555554444555666555543 24555544443 332 34445556554 899988543 3222333
Q ss_pred HHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhc
Q 047109 83 LAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHD 162 (808)
Q Consensus 83 ~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~ 162 (808)
+..+ .. ++|+|......+. . .+-....++. ..++.+++.+...|.++++++..........-.+.|.+.+++
T Consensus 82 ~~~~-~~-~iPvV~i~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~ 153 (289)
T 3k9c_A 82 LGAL-AD-RVPALVVARASGL-P--GVGAVRGDDV---AGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDR 153 (289)
T ss_dssp HHHH-HT-TSCEEEESSCCSS-T--TSEEEEECHH---HHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHH-Hc-CCCEEEEcCCCCC-C--CCCEEEeChH---HHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 3334 34 9999998754332 1 2334455656 677888888888899999999865533211456788899999
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeE
Q 047109 163 NDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYS 225 (808)
Q Consensus 163 ~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~ 225 (808)
.|+.+... .+.. ..+.++-...+.++.+ ..+++| ++++...+..+++++++.|+.-++-+
T Consensus 154 ~g~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di 215 (289)
T 3k9c_A 154 HGLSASAT-VVTG-GTTETEGAEGMHTLLEMPTPPTAV-VAFNDRCATGVLDLLVRSGRDVPADI 215 (289)
T ss_dssp TTCGGGEE-EECC-CSSHHHHHHHHHHHHTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred CCCCCCcc-EEEC-CCCHHHHHHHHHHHHcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCce
Confidence 98763221 2222 2244444445555543 345654 45667778899999999998644433
No 115
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.61 E-value=0.00046 Score=70.43 Aligned_cols=202 Identities=12% Similarity=0.054 Sum_probs=118.7
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHH---HHHHhhhcCCeEEEEecCCCh
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALT---TVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~---~a~~li~~~~v~aiiG~~~~s 77 (808)
-+||++.|... +.-.....+++-+.++. ++++. +.++..++....+ ....+++. +|.+||... ..
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~ 77 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAV-------HRHVV--VATGCGESTPREQALEAVRFLIGR-DCDGVVVIS-HD 77 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EECCCSSSCHHHHHHHHHHHHHHT-TCSEEEECC-SS
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHC-------CCEEE--EEeCCCchhhhhhHHHHHHHHHhc-CccEEEEec-CC
Confidence 47999998643 33344556666665542 23443 4455555555455 55566655 898888643 32
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPY 155 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~ 155 (808)
.....+.. +...++|+|......+. . .+.....++. ..++.+++.+...|.++++++..+.. ... .-.+.
T Consensus 78 ~~~~~~~~-l~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~G 149 (290)
T 2rgy_A 78 LHDEDLDE-LHRMHPKMVFLNRAFDA-L--PDASFCPDHR---RGGELAAATLIEHGHRKLAVISGPFTASDNV-ERLDG 149 (290)
T ss_dssp SCHHHHHH-HHHHCSSEEEESSCCTT-S--GGGEECCCHH---HHHHHHHHHHHHTTCCSEEEEESCTTCHHHH-HHHHH
T ss_pred CCHHHHHH-HhhcCCCEEEEccccCC-C--CCCEEEeCcH---HHHHHHHHHHHHCCCceEEEEeCCCCCccHH-HHHHH
Confidence 22222222 33468999998654332 1 2233455555 66777888887789999999986532 223 44677
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGY 224 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~ 224 (808)
|.+.+++.|+.+.....+.. ..+.++-...+.++.+ ..+++|+ +++...+..+++++++.|+..++-
T Consensus 150 f~~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~d 218 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIES-DFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGD 218 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEEC-CSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHcCCCCCcccEEec-CCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCc
Confidence 88889988865321111111 1133333333444332 3567665 566777889999999999854443
No 116
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.60 E-value=0.0021 Score=66.33 Aligned_cols=200 Identities=10% Similarity=0.083 Sum_probs=124.9
Q ss_pred eEEEEEEec-CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDM-RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~-~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|. +.+.-.....+++-+.++.+ +++ .+.++..++..-.+....+++. ++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLG-------AKV--FVQSANGNEETQMSQIENMINR-GVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTS-------CEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CEE--EEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhh
Confidence 479999996 34444456677777766542 343 4456677888777777778776 888888533033332
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHH-hcCCcEEEEEEecCCc--cccCcHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIR-VFKWKHVILIYEDNTW--GSDNIIPYLF 157 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~-~~~w~~v~ii~~d~~~--g~~~~~~~~~ 157 (808)
......+...+||+|......+. .. ....+...+. ..++.+++.+. ..|-++++++..+... .. .-.+.|.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~-~R~~Gf~ 146 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMIND-AD-IDFYISFDNE---KVGELQAKALVDIVPQGNYFLMGGSPVDNNAK-LFRAGQM 146 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTT-SC-CSEEEEECHH---HHHHHHHHHHHHHCSSEEEEEEESCTTCHHHH-HHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCC-CC-ceEEEecCHH---HHHHHHHHHHHHhCCCCcEEEEECCCCCccHH-HHHHHHH
Confidence 33445556679999998764433 11 1134455666 77888888886 8999999999754332 22 3457777
Q ss_pred HhhhcC----CcEEEEEEecCCCCCChHHHHHHHHHhcC---CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 158 DSLHDN----DIDIARRITISMSSNTDDQVIEKLSMLKS---SETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 158 ~~~~~~----g~~i~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
+.+++. ++.+..... .. ..+.+.....+.++.+ ..+++| ++.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VD-GWLPENALKIMENALTANNNKIDAV-VASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CG-GGCHHHHHHHHHHHHHHTTTCCCEE-EESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CC-CcCHHHHHHHHHHHHHhCCCCeeEE-EECCCchHHHHHHHHHHcCCC
Confidence 778776 676654332 11 1133333334444332 345654 455677788999999999984
No 117
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.59 E-value=0.0016 Score=66.81 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=124.1
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCC--CHHHHHHHHHHhhhcCCeEEEEe-cCCCh
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKG--DPLHALTTVLNLMQNVDLQAIIC-TEMTP 77 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~--~~~~a~~~a~~li~~~~v~aiiG-~~~~s 77 (808)
.+||+++|... +.-.....+++-+.++.+ +++.+ .++.. ++....+....+++. ++.+||- |. ..
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~-~~ 74 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQG-------VNLRV--LEAGGYPNKSRQEQQLALCTQW-GANAIILGTV-DP 74 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHT-------CEEEE--EECSSTTCHHHHHHHHHHHHHH-TCSEEEECCS-ST
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcC-------CeEEE--EcCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-Ch
Confidence 58999999643 333345566666655542 34444 45544 888888888888876 8888884 43 33
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCccc--cc-ceeeeccCCchhhHHHHHHHHHHHhcC-----CcEEEEEEecCC--c
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSL--TS-YSIQIDQDDEASQSQAKGIADLIRVFK-----WKHVILIYEDNT--W 147 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~l--s~-~~~r~~p~~~~~~~~~~a~~~ll~~~~-----w~~v~ii~~d~~--~ 147 (808)
.........+. .+||+|......+... .+ .+..+.+... ..++.+++.+...+ -++++++..... .
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~ 150 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWY---WMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGG 150 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHH---HHHHHHHHHHHTTSBTTTCCEEEEEECCCC----
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHH---HHHHHHHHHHHHhcccCCCCCEEEEEECCCCcch
Confidence 31122233345 8999999855443100 11 4455666666 77888888888888 889999975533 2
Q ss_pred cccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhc-CCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 148 GSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLK-SSETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 148 g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
.. .-.+.|.+.+++.|+.+.... .. ..+.+.....+.++. ...+++ | +++...+..+++++++.|+.
T Consensus 151 ~~-~R~~gf~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 151 TK-PVTTGFYEAIKNSDIHIVDSF--WA-DNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp -C-HHHHHHHHTTTTBTEEEEECC--CC-CSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HH-HHHHHHHHHHhcCCCEEEEee--cC-CCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 23 446889999999998876532 22 223333333333332 245677 4 55778889999999999974
No 118
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.59 E-value=0.0022 Score=65.53 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=118.8
Q ss_pred EEEEEEecC------CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 3 HVGVILDMR------SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 3 ~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+||+++|.. .+.-.....+++-+.++. ++++ .+.++..++....+....+.+ .+|.+||-.. .
T Consensus 9 ~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~-~ 77 (295)
T 3hcw_A 9 KIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-------GYGT--QTTVSNNMNDLMDEVYKMIKQ-RMVDAFILLY-S 77 (295)
T ss_dssp EEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-------TCEE--EECCCCSHHHHHHHHHHHHHT-TCCSEEEESC-C
T ss_pred EEEEEeecCCcccccChHHHHHHHHHHHHHHHC-------CCEE--EEEcCCCChHHHHHHHHHHHh-CCcCEEEEcC-c
Confidence 699999642 232223344444443322 2344 445555555544444445554 4898888543 2
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHH
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIP 154 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~ 154 (808)
.... .....+...++|+|......+. ....+..+..... ..++.+++.+...|.++++++...... .. .-.+
T Consensus 78 ~~~~-~~~~~l~~~~iPvV~i~~~~~~-~~~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~ 151 (295)
T 3hcw_A 78 KEND-PIKQMLIDESMPFIVIGKPTSD-IDHQFTHIDNDNI---LASENLTRHVIEQGVDELIFITEKGNFEVSK-DRIQ 151 (295)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCSS-GGGGSCEEEECHH---HHHHHHHHHHHHHCCSEEEEEEESSCCHHHH-HHHH
T ss_pred ccCh-HHHHHHHhCCCCEEEECCCCcc-ccCCceEEecCcH---HHHHHHHHHHHHcCCccEEEEcCCccchhHH-HHHH
Confidence 2222 2233445569999998765444 2101233445555 667778888877899999999865432 22 4568
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-----CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-----SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.|.+.+++.|+.+.... ... +.++....++++.+ ..+++|+ +.+...|..+++++++.|+.-++-+-|
T Consensus 152 Gf~~al~~~g~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 224 (295)
T 3hcw_A 152 GFETVASQFNLDYQIIE-TSN---EREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMT 224 (295)
T ss_dssp HHHHHHHHTTCEEEEEE-ECS---CHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEE
T ss_pred HHHHHHHHcCCCeeEEe-ccC---CHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 88899999998876321 122 33333333333322 2567654 567777899999999999865544433
No 119
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.59 E-value=0.00091 Score=68.70 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=121.1
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|... +.-.....+++-+.++.+ +++ .+.++..++..-.+....+++. +|.+||-.. ......
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~~ 85 (303)
T 3kke_A 17 TIGLIVPDVNNAVFADMFSGVQMAASGHS-------TDV--LLGQIDAPPRGTQQLSRLVSEG-RVDGVLLQR-REDFDD 85 (303)
T ss_dssp CEEEEESCTTSTTHHHHHHHHHHHHHHTT-------CCE--EEEECCSTTHHHHHHHHHHHSC-SSSEEEECC-CTTCCH
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHHCC-------CEE--EEEeCCCChHHHHHHHHHHHhC-CCcEEEEec-CCCCcH
Confidence 5999999644 333445666666655432 344 3445556666666666666655 898888644 332223
Q ss_pred -HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHH
Q 047109 82 -ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFD 158 (808)
Q Consensus 82 -~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~ 158 (808)
.+..+.+ ++|+|......+. .+-....... ..++.+++.+...|.++++++...... .. .-.+.|.+
T Consensus 86 ~~~~~l~~--~iPvV~i~~~~~~----~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~ 155 (303)
T 3kke_A 86 DMLAAVLE--GVPAVTINSRVPG----RVGSVILDDQ---KGGGIATEHLITLGHSRIAFISGTAIHDTAQ-RRKEGYLE 155 (303)
T ss_dssp HHHHHHHT--TSCEEEESCCCTT----CCCEEEECHH---HHHHHHHHHHHHTTCCSEEEEESCSSCHHHH-HHHHHHHH
T ss_pred HHHHHHhC--CCCEEEECCcCCC----CCCEEEECcH---HHHHHHHHHHHHCCCCeEEEEeCCCcCccHH-HHHHHHHH
Confidence 4444544 9999998754432 1223455555 677778888888899999999865432 22 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHh-----cC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSML-----KS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG 223 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l-----~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~ 223 (808)
.+++.|+.+........ ..+.+.-...+.++ .+ ..+++| ++++...|..+++++++.|+..++
T Consensus 156 al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 156 TLASAGLRSEAAWVVDA-GWEADAGSAALNTLYRGANLGKPDGPTAV-VVASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHTTCCCCGGGEEEC-CSSHHHHHHHHHHHHHHHCTTSTTSCSEE-EESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCCCcceEEec-CCChHHHHHHHHHhcchhhhcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCC
Confidence 99999876432111111 12334444455555 43 345654 456677788999999999986443
No 120
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.59 E-value=0.0024 Score=64.46 Aligned_cols=204 Identities=13% Similarity=0.084 Sum_probs=123.2
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++. ++++ .+.++..++..-.+....+++. ++.+||-.. ...
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~~-- 74 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESR-------GYIG--VLFDANADIEREKTLLRAIGSR-GFDGLILQS-FSN-- 74 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTT-------TCEE--EEEECTTCHHHHHHHHHHHHTT-TCSEEEEES-SCC--
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEec-CCc--
Confidence 37999998643 22233444544444332 2344 4455666777666666666655 898888644 333
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC-ccc-cCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT-WGS-DNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~-~g~-~~~~~~~~~ 158 (808)
......+...++|+|......+. . .+-.+..+.. ..++.+++.+...|.++++++..... ... ..-.+.|.+
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~ 148 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDREMDA-C--PWPQVVTDNF---EAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILA 148 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCCCTT-C--SSCEEECCHH---HHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEecccCC-C--CCCEEEEChH---HHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 34444556679999998654333 1 2233455666 77888888888889999999987653 221 144577888
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT 229 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 229 (808)
.+++.+. +... .-.. .....+....+.++. ..+++|+ +++...+..+++++++.|+..++-+-|++
T Consensus 149 ~l~~~~~-~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 149 AAQDVDV-LEVS-ESSY--NHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp TCSEEEE-EEEC-SSSC--CHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHhCCc-EEEe-cccc--CCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 8887753 2211 0001 122344444455543 4556544 56777888999999999986555444443
No 121
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.57 E-value=0.0018 Score=66.45 Aligned_cols=211 Identities=11% Similarity=0.033 Sum_probs=125.1
Q ss_pred CeEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChh
Q 047109 1 EVHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPT 78 (808)
Q Consensus 1 ~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~ 78 (808)
+++||++.|... +.-.....+++-+.++.+ +++ .+.++ .++..-.+....+++. +|.+||- |. .+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~-~~~~~~~~~i~~l~~~-~vdgiii~~~-~~~ 69 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-------FEV--IKIAV-PDGEKTLNAIDSLAAS-GAKGFVICTP-DPK 69 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------EEE--EEEEC-CSHHHHHHHHHHHHHT-TCCEEEEECS-CGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcC-------CEE--EEeCC-CCHHHHHHHHHHHHHc-CCCEEEEeCC-Cch
Confidence 579999999654 334456677777766653 344 45566 5888778888888876 7988875 44 444
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCccccc----ceeeeccCCchhhHHHHHHHHHHH-hcCC-----cEEEEEE-ecCC-
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTS----YSIQIDQDDEASQSQAKGIADLIR-VFKW-----KHVILIY-EDNT- 146 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~----~~~r~~p~~~~~~~~~~a~~~ll~-~~~w-----~~v~ii~-~d~~- 146 (808)
........+...+||+|......+. ... .+.....++. ..++.+++.+. ..+- .+++++. ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~V~~D~~---~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~ 145 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVN-AKGKPMDTVPLVMLAAT---KIGERQGQELYKEMQKRGWDVKESAVMAITANEL 145 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBC-TTSCBCTTSCEEEECHH---HHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCC-ccccccccccEEecChh---HHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC
Confidence 4444444556679999998754332 210 2233444555 55565555543 3233 3888886 3332
Q ss_pred -ccccCcHHHHHHhhhcCCc---EEEEEEecCCCCCChHHHHHHHHHhcCC--CCeE-EEEEcCHHHHHHHHHHHHHcCC
Q 047109 147 -WGSDNIIPYLFDSLHDNDI---DIARRITISMSSNTDDQVIEKLSMLKSS--ETKV-FVVHMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 147 -~g~~~~~~~~~~~~~~~g~---~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~v-iil~~~~~~~~~~l~~a~~~gl 219 (808)
... .-.+.|.+.+++.|. ++.....- ..+.+.-...+.++.+. .++. +|++++...+..+++++++.|+
T Consensus 146 ~~~~-~R~~Gf~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~ 221 (306)
T 8abp_A 146 DTAR-RRTTGSMDALKAAGFPEKQIYQVPTK---SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 221 (306)
T ss_dssp HHHH-HHHHHHHHHHHHHTCCGGGEEEEECS---SSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHHHHhcCCCCcEEEeeccC---CCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCC
Confidence 122 345778888888764 34332221 22444444555555544 3455 4566677788999999999998
Q ss_pred CCCCeEEEEeCc
Q 047109 220 MSKGYSWIVTAS 231 (808)
Q Consensus 220 ~~~~~~~i~~~~ 231 (808)
...+...++-+.
T Consensus 222 ~v~di~vvG~D~ 233 (306)
T 8abp_A 222 KAADIIGIGING 233 (306)
T ss_dssp CGGGEEEEEESS
T ss_pred CCCceEEEEeCc
Confidence 432344444443
No 122
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.56 E-value=0.00062 Score=69.44 Aligned_cols=208 Identities=8% Similarity=0.025 Sum_probs=125.0
Q ss_pred eEEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|.... .-.....+++-+.++. ++++ .+.++..++....+....+++. ++.+||-.. ... .
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~~~-~ 76 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHK-------GYSV--LLANTAEDIVREREAVGQFFER-RVDGLILAP-SEG-E 76 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECC-CSS-C
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHHC-CCCEEEEeC-CCC-C
Confidence 479999986442 2334555666555543 2344 4556666777777777777665 899888644 332 2
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCC--ccccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNT--WGSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 158 (808)
......+...+||+|......+. . .+..+..+.. ..++.+++.+...|.++++++..... ... .-.+.|.+
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~ 149 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRI-P--GCGAVLSENV---RGARTAVEYLIARGHTRIGAIVGSAGLMTSR-ERLKGFRA 149 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCC-T--TCEEEEECHH---HHHHHHHHHHHHTTCCSEEEECSCTTSHHHH-HHHHHHHH
T ss_pred hHHHHHhhccCCCEEEEecccCC-C--CCCEEEECcH---HHHHHHHHHHHHcCCCEEEEEeCCCCCcCHH-HHHHHHHH
Confidence 33445667789999998765432 1 2334455666 77788888888889999999986543 222 45678888
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhc--CCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLK--SSETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
.+++.|+.+........ ..+.+.....+.++. ...+++|+ +.+...+..+++++++.|+..++ ...++-+
T Consensus 150 ~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 150 AMSAAGLPVRQEWIAAG-GVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHTTCCCCGGGEEC-------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHcCCCCCHHHeEeC-CCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 89988876421111111 001111122233332 24566655 57777888999999999986444 3344333
No 123
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.53 E-value=0.00031 Score=71.23 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=119.8
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++. ++++.+ .++. ++....+....+++. ++.+|| .. .....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~--~~~~-~~~~~~~~~~~l~~~-~vdgiI-~~-~~~~~ 72 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPK-------GYRLSV--IDSL-TSQAGTDPITSALSM-RPDGII-IA-QDIPD 72 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGG-------TCEEEE--ECSS-SSCSSSCHHHHHHTT-CCSEEE-EE-SCC--
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHC-------CCEEEE--EeCC-CchHHHHHHHHHHhC-CCCEEE-ec-CCCCh
Confidence 47999998643 33444555655554433 234444 4444 444444444555555 888888 33 22222
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhh
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSL 160 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~ 160 (808)
..+.. .+||+|......+. -. .+........ ..++.+++.+...|.++++++........ .-.+.|.+.+
T Consensus 73 ~~~~~----~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~-~R~~gf~~~l 142 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTRITQ-AS-THDSVANDDF---RGAEIATKHLIDLGHTHIAHLRVGSGAGL-RRFESFEATM 142 (280)
T ss_dssp ----------CCCEEEESCCCSS-SC-STTEEEECHH---HHHHHHHHHHHHTTCCSEEEECCSSHHHH-HHHHHHHHHH
T ss_pred hhHhh----cCCCEEEECCCCCC-CC-CCCEEEechH---HHHHHHHHHHHHCCCCeEEEEeCCCchHH-HHHHHHHHHH
Confidence 22222 89999998765412 11 2223455556 77788888888889999999987654444 5678899999
Q ss_pred hcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 161 HDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 161 ~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
++.|..+.... ... ..+.++....+.++.+ ..+++|+ +.+...+..+++++++.|+..++ ...++-+
T Consensus 143 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLG-PAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCS-CCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccC-CCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998765432 222 2233344444444433 3456554 56677888999999999985443 3344333
No 124
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.52 E-value=0.00065 Score=69.21 Aligned_cols=203 Identities=10% Similarity=-0.019 Sum_probs=120.4
Q ss_pred eEEEEEEe-c-CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 2 VHVGVILD-M-RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~-~-~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
-+||+++| . +.+.-.....+++-+.++.+ +++.+...+. ++..-.+....+. ..++.+||-.. ....
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~~~~~--~~~~~~~~~~~l~-~~~vdgiIi~~-~~~~ 80 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQN-------YNYNVVICPY--KTDCLHLEKGISK-ENSFDAAIIAN-ISNY 80 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHTT-------TCSEEEEEEE--CTTCGGGCGGGST-TTCCSEEEESS-CCHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHcC-------CeEEEEecCC--CchhHHHHHHHHh-ccCCCEEEEec-CCcc
Confidence 47999999 2 34443445666666655532 2333332221 1111122223344 45899888655 4443
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~ 157 (808)
...+... ...++|+|......+. +..+..+.. ..++.+++.+...|.++++++..+... .. .-.+.|.
T Consensus 81 ~~~~~~~-~~~~iPvV~~~~~~~~-----~~~V~~D~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~ 150 (289)
T 3g85_A 81 DLEYLNK-ASLTLPIILFNRLSNK-----YSSVNVDNY---KMGEKASLLFAKKRYKSAAAILTESLNDAMD-NRNKGFI 150 (289)
T ss_dssp HHHHHHH-CCCSSCEEEESCCCSS-----SEEEEECHH---HHHHHHHHHHHHTTCCBCEEEECCCSSHHHH-HHHHHHH
T ss_pred cHHHHHh-ccCCCCEEEECCCCCC-----CCEEEeCHH---HHHHHHHHHHHHcCCCEEEEEeCCcccccHH-HHHHHHH
Confidence 3334333 3679999998765443 223455556 777888888888899999999865432 22 4567888
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
+.+++.|+.+.....+.. ..+.++....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+-|
T Consensus 151 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 151 ETCHKNGIKISENHIIAA-ENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHTTCBCCGGGEEEC-CSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCChhheecc-CCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999876432111111 22344444555555543 456554 567778889999999999864444333
No 125
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.52 E-value=0.0012 Score=67.19 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=119.3
Q ss_pred eEEEEEEecCC---cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 2 VHVGVILDMRS---WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
-+||+++|... +.-.....+++-+.++ . ++++.+ .++..++... ....+++...++.+||-.. ...
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~----~---g~~~~~--~~~~~~~~~~-~~~~~~l~~~~vdgiIi~~-~~~ 77 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLST----T---QYHLVV--TPHIHAKDSM-VPIRYILETGSADGVIISK-IEP 77 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTT----S---SCEEEE--CCBSSGGGTT-HHHHHHHHHTCCSEEEEES-CCT
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHH----c---CCEEEE--ecCCcchhHH-HHHHHHHHcCCccEEEEec-CCC
Confidence 36999999654 3322334444443322 2 344444 3443343332 3333444444788777432 222
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHH
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYL 156 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~ 156 (808)
... ....+...++|+|......+. . .+-.+..+.. ..++.+++.+...|.++++++..+... .. .-.+.|
T Consensus 78 ~~~-~~~~l~~~~iPvV~i~~~~~~-~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~gf 149 (288)
T 3gv0_A 78 NDP-RVRFMTERNMPFVTHGRSDMG-I--EHAFHDFDNE---AYAYEAVERLAQCGRKRIAVIVPPSRFSFHD-HARKGF 149 (288)
T ss_dssp TCH-HHHHHHHTTCCEEEESCCCSS-C--CCEEEEECHH---HHHHHHHHHHHHTTCCEEEEECCCTTSHHHH-HHHHHH
T ss_pred CcH-HHHHHhhCCCCEEEECCcCCC-C--CCcEEEeCcH---HHHHHHHHHHHHCCCCeEEEEcCCcccchHH-HHHHHH
Confidence 212 223344579999997754333 1 2223455556 777888888888899999999865432 23 456888
Q ss_pred HHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 047109 157 FDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS--ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSW 226 (808)
Q Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~ 226 (808)
.+.+++.|+.+.....+.. ..+.++....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+-
T Consensus 150 ~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 219 (288)
T 3gv0_A 150 NRGIRDFGLTEFPIDAVTI-ETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVD 219 (288)
T ss_dssp HHHHHHTTCEECCCCSCCT-TSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCE
T ss_pred HHHHHHcCCCcchhheecc-ccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceE
Confidence 8999999987654322222 22444555566666543 456544 56677788999999999986444333
No 126
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.50 E-value=0.00062 Score=70.11 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred eehhhhhccCCceeeecCCcHHHhh----hccCCCccccc-ccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC
Q 047109 629 TVQQIKLASRDNIGSQLGSFVPGAL----SNLNFKDSRLK-KYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS 703 (808)
Q Consensus 629 t~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 703 (808)
+++++ +++++++..++.....+ ++.+.....+. .+.+..+...++.+|+ +|+++...........+.
T Consensus 99 s~~dL---~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~- 170 (308)
T 2x26_A 99 TVADL---KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG- 170 (308)
T ss_dssp SGGGG---TTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS-
T ss_pred CHHHc---CCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC-
Confidence 34555 89999998777655443 44444322332 3456788899998888 999988877766655443
Q ss_pred CceEEecc--ccccccceEEEEe----CCCC-ChHHHHHHHHh----hhhcC-chHHHHHHhcC
Q 047109 704 TDYTMIAP--NYTTTSGFGFVFQ----KGSP-LVHDISRAIAK----LREEG-TLRKIEIEWFN 755 (808)
Q Consensus 704 ~~l~~~~~--~~~~~~~~~~~~~----k~sp-~~~~~~~~i~~----l~e~G-~~~~~~~~~~~ 755 (808)
.++++.. .+. .....++++ +..| +.+.|.+++.+ +.+++ ...++..+|+.
T Consensus 171 -~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 171 -GVRVLKDGTDLN-QTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp -SEEEEEESTTSC-CCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred -CcEEEecCCCcC-CcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 3444422 222 222234443 3345 77777777765 44444 34455566654
No 127
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.47 E-value=0.00095 Score=68.25 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=123.2
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh---
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT--- 78 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~--- 78 (808)
+||+++|... +.-.....+++-+.++. ++++ .+.++..++..-.+....+++. ++.+||-....+.
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSEQ-------GYSM--LLTSTNNNPDNERRGLENLLSQ-HIDGLIVEPTKSALQT 86 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-CCSEEEECCSSTTSCC
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHHC-CCCEEEEecccccccC
Confidence 6999999644 33334556666555543 2344 4456667787777777777765 8988886430221
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc-cccCcHHHHH
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW-GSDNIIPYLF 157 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~-g~~~~~~~~~ 157 (808)
........+...++|+|......+. . .+.....+.. ..++.+++.+...|.++++++...... .. .-.+.|.
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~-~R~~gf~ 159 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAE-L--AAPSFTLDDV---KGGMMAAEHLLSLGHTHMMGIFKADDTQGV-KRMNGFI 159 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTT-C--SSCEEEECHH---HHHHHHHHHHHHTTCCSEEEEEESSSHHHH-HHHHHHH
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCC-C--CCCEEEeCcH---HHHHHHHHHHHHCCCCcEEEEcCCCCccHH-HHHHHHH
Confidence 2233334455569999998765443 2 1223455556 777888888888899999999865542 22 4467788
Q ss_pred HhhhcCCcEEEEEEecCCCCCCh--HHHHHHHHHhcC--CC--CeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 158 DSLHDNDIDIARRITISMSSNTD--DQVIEKLSMLKS--SE--TKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~--~~~~~~l~~l~~--~~--~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
+.+++.|+.+........ .... ......+.++.+ .. +++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 160 ~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTF-TTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEE-CHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEe-cccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 899998876432111111 0000 111222333322 22 56544 5567778899999999998644444443
No 128
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.37 E-value=0.0028 Score=66.21 Aligned_cols=207 Identities=9% Similarity=0.049 Sum_probs=121.0
Q ss_pred eEEEEEEec--CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC--CCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 2 VHVGVILDM--RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSK--GDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 2 i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~--~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
-+||++.|. +.+.-.....+++-+.++. ++++.+...++. .++..-.+....+++. ++.+||-+. ..
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~-~~ 114 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKL-------NINYQLNQVFTRPNADIKQQSLSLMEALKS-KSDYLIFTL-DT 114 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHT-------TCCEEEEEEECCTTCCHHHHHHHHHHHHHT-TCSEEEECC-SS
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHc-------CCeEEEEecCCCCccCHHHHHHHHHHHHhc-CCCEEEEeC-Ch
Confidence 479999996 4444334555666555443 245555554554 6777666777777765 899888755 43
Q ss_pred hH-HHHHHHhcCCCCccEEec-cCCCCcc-c-cc-ceeeeccCCchhhHHHHHHHHHHHh-cC-CcEEEEEEecCCc-cc
Q 047109 78 TG-AHILAEIGSKAKIPVISL-YATLPSS-L-TS-YSIQIDQDDEASQSQAKGIADLIRV-FK-WKHVILIYEDNTW-GS 149 (808)
Q Consensus 78 ~~-~~~~~~~~~~~~iP~is~-~~~~~~~-l-s~-~~~r~~p~~~~~~~~~~a~~~ll~~-~~-w~~v~ii~~d~~~-g~ 149 (808)
.. ...+.. +...++|+|.. ....|.. + .+ .+..+.+++. ..++.+++.+.. .| .++++++...... ..
T Consensus 115 ~~~~~~~~~-~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~ 190 (342)
T 1jx6_A 115 TRHRKFVEH-VLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHA---EGSRELATEFGKFFPKHTYYSVLYFSEGYISD 190 (342)
T ss_dssp STTHHHHHH-HHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHH---HHHHHHHHHHHHHSCTTCEEEEECCSTTHHHH
T ss_pred HhHHHHHHH-HHHcCCCEEEEecCCCcccccccCCCceEEecCcH---HHHHHHHHHHHHHcCCCceEEEEEcCCcchhh
Confidence 32 223333 33458998876 4322210 0 01 3334556666 667778887766 47 9999999755432 22
Q ss_pred cCcHHHHHHhhhcCCc-EEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 047109 150 DNIIPYLFDSLHDNDI-DIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSW 226 (808)
Q Consensus 150 ~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~ 226 (808)
.-.+.|.+.+++.|. .... .+.. ..+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+ .+...
T Consensus 191 -~R~~Gf~~~l~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~--~di~v 263 (342)
T 1jx6_A 191 -VRGDTFIHQVNRDNNFELQS--AYYT-KATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR--EDIMI 263 (342)
T ss_dssp -HHHHHHHHHHHHHHCCEEEE--EECC-CSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC--TTSEE
T ss_pred -HHHHHHHHHHHhCCCcEEEE--EecC-CCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC--CCcEE
Confidence 345778888888775 3322 2222 2233333334444432 3466655 5566778899999999997 44444
Q ss_pred EE
Q 047109 227 IV 228 (808)
Q Consensus 227 i~ 228 (808)
++
T Consensus 264 vg 265 (342)
T 1jx6_A 264 NG 265 (342)
T ss_dssp BC
T ss_pred EE
Confidence 33
No 129
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.36 E-value=0.012 Score=59.05 Aligned_cols=205 Identities=12% Similarity=0.066 Sum_probs=117.1
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChhHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPTGA 80 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~~~ 80 (808)
+||++.|... +.-.....+++-+.++.+ +++. +.++..++..-.+....+++. +|.+||- +. .....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-------~~~~--~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~-~~~~~ 71 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKLG-------YNLV--VLDSQNNPAKELANVQDLTVR-GTKILLINPT-DSDAV 71 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHTTT-TEEEEEECCS-STTTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHcC-------cEEE--EeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-ChHHH
Confidence 5899998643 333344555555555432 3443 345666776655666666655 8998875 33 32221
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc--CCcEEEEEEecCCc--cccCcHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF--KWKHVILIYEDNTW--GSDNIIPYL 156 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~--~w~~v~ii~~d~~~--g~~~~~~~~ 156 (808)
......+...++|+|......+. .. ........+. ..++.+++.+... +.++++++...... .. .-.+.|
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~-~R~~Gf 145 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQATK-GE-VVSHIASDNV---LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR-ERGEGF 145 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSS-SC-CSEEEEECHH---HHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHH-HHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCCC-Cc-eeEEEecChH---HHHHHHHHHHHHHcCCCCeEEEEECCCCCccHh-HHHHHH
Confidence 22223344568999998654322 11 1123445555 6666777777554 56899999854322 12 335678
Q ss_pred HHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 157 FDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
.+.+++.|+.+..... . ..+.+.-...++++.+ ..+++ |++.+...|..+++++++.|+ .+...++-+
T Consensus 146 ~~al~~~g~~~~~~~~--~-~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 146 QQAVAAHKFNVLASQP--A-DFDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHHHTCEEEEEEE--C-TTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHHHhcCCCEEEEecC--C-CCCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 8888888987654221 1 1133333333333322 34554 556667778999999999997 444444443
No 130
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.35 E-value=0.011 Score=59.83 Aligned_cols=209 Identities=12% Similarity=0.011 Sum_probs=120.0
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEec--CCCCHHHHHHHHHHhhhcCCeEEEEe-cCCCh
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRD--SKGDPLHALTTVLNLMQNVDLQAIIC-TEMTP 77 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d--~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s 77 (808)
-+||++.|... ++-.....+++-+.++.+ +++. +.+ +..++..-.+....+++. +|.+||- +. ..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~-~~ 70 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLG-------VSVD--IFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPL-SS 70 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CCEE--EEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCS-SS
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcC-------CEEE--EeCCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-Ch
Confidence 37999998633 332334555555555443 3443 344 556776666666667665 8999874 33 32
Q ss_pred hH-HHHHHHhcCCCCccEEeccCCCCcccc-c----ce-eeeccCCchhhHHHHHHHHHHHhc-C--CcEEEEEEecCCc
Q 047109 78 TG-AHILAEIGSKAKIPVISLYATLPSSLT-S----YS-IQIDQDDEASQSQAKGIADLIRVF-K--WKHVILIYEDNTW 147 (808)
Q Consensus 78 ~~-~~~~~~~~~~~~iP~is~~~~~~~~ls-~----~~-~r~~p~~~~~~~~~~a~~~ll~~~-~--w~~v~ii~~d~~~ 147 (808)
.. ...+.. +...++|+|......+. .. . .+ -.....+. ..++.+++.|... | .++++++......
T Consensus 71 ~~~~~~~~~-~~~~~iPvV~~~~~~~~-~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~ 145 (288)
T 1gud_A 71 VNLVMPVAR-AWKKGIYLVNLDEKIDM-DNLKKAGGNVEAFVTTDNV---AVGAKGASFIIDKLGAEGGEVAIIEGKAGN 145 (288)
T ss_dssp STTHHHHHH-HHHTTCEEEEESSCCCH-HHHHHTTCCCSEEEECCHH---HHHHHHHHHHHHHHGGGCEEEEEEECSTTC
T ss_pred HHHHHHHHH-HHHCCCeEEEECCCCCc-ccccccCCceeEEECCChH---HHHHHHHHHHHHHhCCCCCEEEEEeCCCCC
Confidence 21 223333 33468999998654332 11 0 12 33455555 6667777877665 7 8999999865432
Q ss_pred cc-cCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 047109 148 GS-DNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG 223 (808)
Q Consensus 148 g~-~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~ 223 (808)
.. ..-.+.|++.+++. |+.+..... . ..+.+.-...++++.+ ..+++ |++.+...|..+++++++.|+. .+
T Consensus 146 ~~~~~R~~Gf~~al~~~~g~~~~~~~~--~-~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~~-~d 220 (288)
T 1gud_A 146 ASGEARRNGATEAFKKASQIKLVASQP--A-DWDRIKALDVATNVLQRNPNIKA-IYCANDTMAMGVAQAVANAGKT-GK 220 (288)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEEE--C-TTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHTTCT-TT
T ss_pred chHhHHHHHHHHHHHhCCCcEEEEeec--C-CccHHHHHHHHHHHHHhCCCceE-EEECCCchHHHHHHHHHhcCCC-CC
Confidence 11 03356788888887 887654322 1 1133333334444332 34565 4456677789999999999983 44
Q ss_pred eEEEEeCc
Q 047109 224 YSWIVTAS 231 (808)
Q Consensus 224 ~~~i~~~~ 231 (808)
...++-|.
T Consensus 221 v~vvGfD~ 228 (288)
T 1gud_A 221 VLVVGTDG 228 (288)
T ss_dssp SEEEEESC
T ss_pred eEEEEeCC
Confidence 45554443
No 131
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.35 E-value=0.0049 Score=64.57 Aligned_cols=200 Identities=14% Similarity=0.059 Sum_probs=117.0
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||++.|... ++-.....+++-+.++. ++++. +.++..++....+....+++. +|.+||-.. ......
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~~ 136 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASKA-------GLATI--ITNSNEDATTMSGSLEFLTSH-GVDGIICVP-NEECAN 136 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHHT-------TCCEE--EEECTTCHHHHHHHHHHHHHT-TCSCEEECC-CGGGHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEeC-CCCChH
Confidence 5999998533 33334555666555442 23443 345556776666666666655 888888644 333222
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~~ 159 (808)
.+ ..+...++|+|......+. . ..+.....++. ..+..+++.+...|.++++++..+... .. .-.+.|.+.
T Consensus 137 ~~-~~l~~~~iPvV~i~~~~~~-~-~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~a 209 (348)
T 3bil_A 137 QL-EDLQKQGMPVVLVDRELPG-D-STIPTATSNPQ---PGIAAAVELLAHNNALPIGYLSGPMDTSTGR-ERLEDFKAA 209 (348)
T ss_dssp HH-HHHHHC-CCEEEESSCCSC-C--CCCEEEEECH---HHHHHHHHHHHHTTCCSEEEECCCTTSHHHH-HHHHHHHHH
T ss_pred HH-HHHHhCCCCEEEEcccCCC-C-CCCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHHHHHHH
Confidence 23 3334468999998654221 0 12223455555 667778888877899999999865322 22 446788888
Q ss_pred hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeE
Q 047109 160 LHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHMSHALASHLFLNAKKLGMMSKGYS 225 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~ 225 (808)
+++.|+..... +.. ..+.++-...+.++.+. .+ .|++.+...|..+++++++.|+.-++-+
T Consensus 210 l~~~g~~~~~v--~~~-~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~di 271 (348)
T 3bil_A 210 CANSKIGEQLV--FLG-GYEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDV 271 (348)
T ss_dssp HHHTTCCCCEE--ECC-CSSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHcCcCccEE--EcC-CCCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCe
Confidence 99888632111 111 11333333344444333 24 4556777788999999999998544433
No 132
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.33 E-value=0.0076 Score=59.82 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=120.0
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||++.|... +.-.....+++-+.++.+ +++. +.++..++..-.+....+++. ++.+||-.. ......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~-~~~~~~ 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQG-------YDPI--MMESQFSPQLVAEHLGVLKRR-NIDGVVLFG-FTGITE 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHHTT-TCCEEEEEC-CTTCCT
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHcC-------CEEE--EEeCCCcHHHHHHHHHHHHhc-CCCEEEEec-CccccH
Confidence 6999998543 333345556665555432 3443 345556676655555666654 888877533 221111
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEec--C-CccccCcHHHHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYED--N-TWGSDNIIPYLFD 158 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d--~-~~g~~~~~~~~~~ 158 (808)
......++|+|......+. +......+. ..++.+++.+...|.++++++... + .... .-.+.|.+
T Consensus 73 ---~~l~~~~~pvV~~~~~~~~-----~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~gf~~ 140 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDAKG-----FASVCYDDE---GAIKILMQRLYDQGHRNISYLGVPHSDVTTGK-RRHEAYLA 140 (255)
T ss_dssp ---TTSGGGSSSEEEESSCCSS-----CEEEEECHH---HHHHHHHHHHHHTTCCCEEEECCCTTSTTTTH-HHHHHHHH
T ss_pred ---HHHHhcCCCEEEEccccCC-----CCEEEEccH---HHHHHHHHHHHHcCCCeEEEEecCCCCcccHH-HHHHHHHH
Confidence 2234458999987653322 223455555 667778888877899999999854 2 2223 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 230 (808)
.+++.|+.+.. +.. ..+.++-...+.++.+..+++|+ +++...|..+++++++.|+ .+...++-+
T Consensus 141 al~~~g~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 141 FCKAHKLHPVA---ALP-GLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHHTTCCCEE---ECC-CSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHHcCCCcce---eec-CCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 99999876432 222 22334444455555555677654 5667778999999999997 444444444
No 133
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.21 E-value=0.0044 Score=64.84 Aligned_cols=205 Identities=12% Similarity=0.064 Sum_probs=121.3
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|... ++-.....+++-+.++ . ++++ .+.++..++..-.+....+++. ++.+||-.. .....
T Consensus 70 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~----~---g~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdGiIi~~-~~~~~- 137 (344)
T 3kjx_A 70 LVAVIIPSLSNMVFPEVLTGINQVLED----T---ELQP--VVGVTDYLPEKEEKVLYEMLSW-RPSGVIIAG-LEHSE- 137 (344)
T ss_dssp EEEEEESCSSSSSHHHHHHHHHHHHTS----S---SSEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEEC-SCCCH-
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHH----C---CCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEEC-CCCCH-
Confidence 6999998643 3322334444443322 1 3444 4456666777776777777765 888877533 22222
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecC--C-ccccCcHHHHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDN--T-WGSDNIIPYLFD 158 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~--~-~g~~~~~~~~~~ 158 (808)
.....+...++|+|......+. ........++. ..+..+++.+...|.++++++.... . ... .-.+.|.+
T Consensus 138 ~~~~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~Gf~~ 210 (344)
T 3kjx_A 138 AARAMLDAAGIPVVEIMDSDGK---PVDAMVGISHR---RAGREMAQAILKAGYRRIGFMGTKMPLDYRAR-KRFEGFTE 210 (344)
T ss_dssp HHHHHHHHCSSCEEEEEECSSC---CSSEEEEECHH---HHHHHHHHHHHHHTCCSCCEEESSTTTCHHHH-HHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCC---CCCCEEEECcH---HHHHHHHHHHHHCCCCeEEEEecCcccCccHH-HHHHHHHH
Confidence 2334455679999987422111 12234455666 6777888888778999999998653 2 222 44678889
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
.+++.|+.+.....+.. ..+.+.-...+.++.+ ..+++|+ +++...|..+++++++.|+..++-+-|+
T Consensus 211 al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 211 VLGKNGVEIEDREFYSG-GSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHTTCCCSCEEECSS-CCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCChheEEeC-CCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999876543322222 2233333333333322 3566655 6677788999999999998655444443
No 134
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.21 E-value=0.0032 Score=65.29 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=53.7
Q ss_pred eehhhhhccCCceeeecCCcHHHhh----hccCCCcccccccC-CHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCC
Q 047109 629 TVQQIKLASRDNIGSQLGSFVPGAL----SNLNFKDSRLKKYN-SAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYS 703 (808)
Q Consensus 629 t~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 703 (808)
++.++ ++++|++..++.....+ ++.+.....+.... +..+...+|.+|+ +|+++...........+..
T Consensus 125 s~~DL---kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~ 197 (324)
T 3ksx_A 125 TVADL---KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLDGS 197 (324)
T ss_dssp SGGGG---TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHTTS
T ss_pred CHHHh---CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhcCC
Confidence 45555 89999998887654433 44444333332222 6788899998888 9998887776665554432
Q ss_pred CceEEeccccccccceEEEEeCC
Q 047109 704 TDYTMIAPNYTTTSGFGFVFQKG 726 (808)
Q Consensus 704 ~~l~~~~~~~~~~~~~~~~~~k~ 726 (808)
.+.......+. .....+++++.
T Consensus 198 ~~~l~~~~~~~-~~~~~~~~~~~ 219 (324)
T 3ksx_A 198 ARLLANGEGLG-LTGGFFLSSRR 219 (324)
T ss_dssp EEEEEESTTSC-CCCEEEEEEHH
T ss_pred cEEEecccccC-CCccEEEECHH
Confidence 12222233343 44455666654
No 135
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.19 E-value=0.0039 Score=63.58 Aligned_cols=207 Identities=11% Similarity=0.063 Sum_probs=117.9
Q ss_pred eEEEEEEec-----CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 2 VHVGVILDM-----RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 2 i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
-+||+++|. +.+.-.....+++-+.++. ++++.+...++ +.. .....+++...+|.+||-.. .
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdGiIi~~-~ 74 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-------GLDLLLIPDEP---GEK-YQSLIHLVETRRVDALIVAH-T 74 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-------TCEEEEEEECT---TCC-CHHHHHHHHHTCCSEEEECS-C
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHC-------CCEEEEEeCCC---hhh-HHHHHHHHHcCCCCEEEEeC-C
Confidence 369999983 3333333455555554443 24555555443 111 22233444444888888543 2
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHH
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIP 154 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~ 154 (808)
.... .....+...++|+|......+. . .+-.....+. ..++.+++.+...|.++++++...... .. .-.+
T Consensus 75 ~~~~-~~~~~l~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~ 146 (294)
T 3qk7_A 75 QPED-FRLQYLQKQNFPFLALGRSHLP-K--PYAWFDFDNH---AGASLAVKRLLELGHQRIAFVSTDARISYVD-QRLQ 146 (294)
T ss_dssp CSSC-HHHHHHHHTTCCEEEESCCCCS-S--CCEEEEECHH---HHHHHHHHHHHHTTCCCEEEEEESSCCHHHH-HHHH
T ss_pred CCCh-HHHHHHHhCCCCEEEECCCCCC-C--CCCEEEcChH---HHHHHHHHHHHHCCCceEEEEeCCcccchHH-HHHH
Confidence 2222 2233445569999998764222 1 2233455666 777788888888899999999876432 22 3467
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
.|.+.+++.|+.+........ ..+.+.-...+.++.+ ..+++| ++++...|..+++++++.|+..++ ...++-+
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKA-DPTRPGGYLAASRLLALEVPPTAI-ITDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEE-CSSHHHHHHHHHHHHHSSSCCSEE-EESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHCCCCCChhHeecC-CCCHHHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 888999998876421101111 1133333334444433 356654 456777888999999999986544 3344433
No 136
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.16 E-value=0.0062 Score=63.52 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=121.8
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|... +.-.....+++-+.++. ++++ .+.++..++..-.+....+++. +|.+||-.. .....
T Consensus 64 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~-~~~~~- 131 (339)
T 3h5o_A 64 TVLVLIPSLANTVFLETLTGIETVLDAA-------GYQM--LIGNSHYDAGQELQLLRAYLQH-RPDGVLITG-LSHAE- 131 (339)
T ss_dssp EEEEEESCSTTCTTHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEEC-SCCCT-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHcC-CCCEEEEeC-CCCCH-
Confidence 6999998643 33334566666665553 2344 4556667777777777777765 888877422 11111
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc-cccCcHHHHHHhh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW-GSDNIIPYLFDSL 160 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~-g~~~~~~~~~~~~ 160 (808)
.....+...++|+|......+. .......++. ..+..+++.+...|.++++++...... .. .-.+.|.+.+
T Consensus 132 ~~~~~l~~~~iPvV~~~~~~~~----~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~-~R~~Gf~~al 203 (339)
T 3h5o_A 132 PFERILSQHALPVVYMMDLADD----GRCCVGFSQE---DAGAAITRHLLSRGKRRIGFLGAQLDERVM-KRLDGYRAAL 203 (339)
T ss_dssp THHHHHHHTTCCEEEEESCCSS----SCCEEECCHH---HHHHHHHHHHHHTTCCSEEEEEESCCHHHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeecCCC----CCeEEEECHH---HHHHHHHHHHHHCCCCeEEEEeCCCCccHH-HHHHHHHHHH
Confidence 2233445568999987542222 1125556666 777778888888899999999876422 22 3457788889
Q ss_pred hcCCcE---EEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 161 HDNDID---IARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 161 ~~~g~~---i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
++.|+. .... ... ..+.+.-...+.++.+ ..+++|+ +++...|..+++++++.|+.-++-+-|+
T Consensus 204 ~~~g~~~~~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 204 DAADCRDAGLEWL--DPQ-PSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHTTCCCGGGEEE--ECS-CCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHCCCCCCChheE--ecC-CCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 888872 1111 111 1233333334444432 3566655 5667788999999999998655444333
No 137
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.16 E-value=0.0041 Score=62.67 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=114.7
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|... +.-.....+++-+.++.+ +++ .+.++..++..-.+....+++. ++.+||-.. .+..
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~~-~~dgiIi~~-~~~~-- 76 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALAHG-------YQV--LIGNSDNDIKKAQGYLATFVSH-NCTGMISTA-FNEN-- 76 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHHTT-------CCE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECG-GGHH--
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCC-------CEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEec-CChH--
Confidence 6999999643 333344555555544432 333 3456666777666666677665 899888654 3322
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~~ 159 (808)
.+...+...++|+|......+. .- .+..+.. ..++.+++.+...|.++++++...... .. .-.+.|.+.
T Consensus 77 ~~~~~l~~~~iPvV~~~~~~~~----~~-~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~~ 147 (277)
T 3e61_A 77 IIENTLTDHHIPFVFIDRINNE----HN-GISTNHF---KGGQLQAEVVRKGKGKNVLIVHENLLIDAFH-QRVQGIKYI 147 (277)
T ss_dssp HHHHHHHHC-CCEEEGGGCC--------------HH---HHHHHHHHHHHHTTCCSEEEEESCTTSHHHH-HHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEeccCCC----CC-eEEechH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHHHHHHH
Confidence 2220444569999998765444 12 4556666 777888888888899999999865432 22 446788899
Q ss_pred hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 160 LHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
+++.|+.+.. ..... ......+.. +.+ ...+++| ++.+...+..+++++++.|+.-++-+-|+
T Consensus 148 l~~~~~~~~~-~~~~~-~~~~~~~~~-l~~--~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 148 LDQQRIDYKM-LEATL-LDNDKKFID-LIK--ELSIDSI-ICSNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHC---CEEE-EEGGG-GGSHHHHHH-HHH--HHTCCEE-EESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHcCCCccc-eecCC-CCHHHHHHH-hhc--CCCCCEE-EECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999987664 22111 111222332 322 2356654 45567788899999999998644444443
No 138
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.14 E-value=0.013 Score=60.37 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=108.8
Q ss_pred eEEEEEEec---CC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 2 VHVGVILDM---RS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 2 i~IG~i~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
.+||++.|. +. ++-.....|++-+.++. ++++.+ .++..+ ....+....+++. ++.+||... ..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-------g~~~~~--~~~~~~-~~~~~~l~~l~~~-~~dgIi~~~-~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-------NAKCKY--VTASTD-AEYVPSLSAFADE-NMGLVVACG-SF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-------TCEEEE--EECCSG-GGHHHHHHHHHHT-TCSEEEEES-TT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-------CCeEEE--EeCCCH-HHHHHHHHHHHHc-CCCEEEECC-hh
Confidence 589999972 22 33333445555554443 234433 333222 3334555666655 898888743 22
Q ss_pred hHHHHHHHhcCC-CCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC-cEEEEEEecCCc-cccCcHH
Q 047109 78 TGAHILAEIGSK-AKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW-KHVILIYEDNTW-GSDNIIP 154 (808)
Q Consensus 78 ~~~~~~~~~~~~-~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w-~~v~ii~~d~~~-g~~~~~~ 154 (808)
.. ..+..++.. .++|++......+. .. .+-.......++..++-.++..+...|. +++++|...... .. ...+
T Consensus 73 ~~-~~~~~~a~~~p~~p~v~id~~~~~-~~-~~~~v~~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~-~r~~ 148 (318)
T 2fqx_A 73 LV-EAVIETSARFPKQKFLVIDAVVQD-RD-NVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP-LFEA 148 (318)
T ss_dssp TH-HHHHHHHHHCTTSCEEEESSCCCS-CT-TEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH-HHHH
T ss_pred HH-HHHHHHHHHCCCCEEEEEcCccCC-CC-CEEEEEechHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH-HHHH
Confidence 11 123344433 48999887653221 11 1212222222111222222466666676 899999754322 22 4567
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVT 229 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 229 (808)
.|.+.+++.|..+.....+..+..+.+.-....+++.+.++++|+ +.....+..+++++++.|+. +.-+++++
T Consensus 149 Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 149 GFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIF-QVAGGTGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEE-EECGGGHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEE-ECCCCCchHHHHHHHhhhhc-cCCcEEEE
Confidence 788888887754433222222011222233344444445788755 45566678889999998875 44444443
No 139
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.11 E-value=0.0064 Score=63.06 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=121.1
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChhH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~~ 79 (808)
-+||+++|... +.-.....+++-+.++. ++++ .+.++..++..-.+....+++. ++.+||- |. .+..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~i~~~~~~-~vdgiIi~~~-~~~~ 72 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEA-------GYKT--DLQYADDDIPNQLSQIENMVTK-GVKVLVIASI-DGTT 72 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHH-TCSEEEECCS-SGGG
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHc-------CCEE--EEeeCCCCHHHHHHHHHHHHHc-CCCEEEEEcC-Cchh
Confidence 47999999654 33334556666666553 2343 4455778888888888888887 8888885 44 4333
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh-------cCCcEEEEEEecCCc--ccc
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV-------FKWKHVILIYEDNTW--GSD 150 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~-------~~w~~v~ii~~d~~~--g~~ 150 (808)
.......+...+||+|......+. ..+.......... ..++.+++.+.. .|.++++++...... ..
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~-~~~~~~~V~~D~~---~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~- 147 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRN-SGDVSYYATFDNF---QVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF- 147 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCS-CTTCCEEEEECHH---HHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH-
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC-CCceeEEEEeCHH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH-
Confidence 344445556679999998765433 2112223445555 667777777766 688899999754322 12
Q ss_pred CcHHHHHHhhhcC---C-cEEEEEEe----c-CCCCCChHHHHHHHHHhcC-----CCCeEEEEEcCHHHHHHHHHHHHH
Q 047109 151 NIIPYLFDSLHDN---D-IDIARRIT----I-SMSSNTDDQVIEKLSMLKS-----SETKVFVVHMSHALASHLFLNAKK 216 (808)
Q Consensus 151 ~~~~~~~~~~~~~---g-~~i~~~~~----~-~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~~l~~a~~ 216 (808)
.-.+.|.+.+++. | +.+..... + .. ..+.+.-...+.++.+ ..+++| ++.+...|..+++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~~ 225 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTL-RWDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLKG 225 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCG-GGCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCC-CCCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHHH
Confidence 3356777777775 3 44331100 0 01 1122222233333322 455654 45667778899999999
Q ss_pred cCCCCC
Q 047109 217 LGMMSK 222 (808)
Q Consensus 217 ~gl~~~ 222 (808)
.|+..+
T Consensus 226 ~g~~vP 231 (330)
T 3uug_A 226 VGYGTK 231 (330)
T ss_dssp TTCSSS
T ss_pred cCCCCC
Confidence 998544
No 140
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.07 E-value=0.013 Score=61.22 Aligned_cols=201 Identities=11% Similarity=0.035 Sum_probs=111.3
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCC-HHHHHHHHHHhhhcCCeEEEEe--cCCCh
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGD-PLHALTTVLNLMQNVDLQAIIC--TEMTP 77 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~-~~~a~~~a~~li~~~~v~aiiG--~~~~s 77 (808)
-+||++.|.-. +.-.....+++-+.++. ++++.+ .++..+ +..-.+....+++. +|.+||- +. ..
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~--~~~~~~~~~~~~~~l~~l~~~-~vdGiIi~~~~-~~ 130 (349)
T 1jye_A 62 LLIGVATSSLALHAPSQIVAAILSRADQL-------GASVVV--SMVERSGVEACKTAVHNLLAQ-RVSGLIINYPL-DD 130 (349)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEEE--EECCSSSHHHHHHHHHHHHTT-TCSCEEEESCC-CH
T ss_pred CEEEEEeCCCCcccHHHHHHHHHHHHHHc-------CCEEEE--EeCCCCcHHHHHHHHHHHHHC-CCCEEEEecCC-CC
Confidence 36999998533 32223445555444432 245544 333333 44444445556554 7887764 44 33
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHH
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPY 155 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~ 155 (808)
... ....+...++|+|......+. .+-.....+. ..+..+++.+...|.++++++...... .. .-.+.
T Consensus 131 ~~~--~~~~~~~~~iPvV~i~~~~~~----~~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~-~R~~G 200 (349)
T 1jye_A 131 QDA--IAVEAACTNVPALFLDVSDQT----PINSIIFSHE---DGTRLGVEHLVALGHQQIALLAGPLSSVSAR-LRLAG 200 (349)
T ss_dssp HHH--HHHHHHTTTSCEEESSSCTTS----SSCEEEECHH---HHHHHHHHHHHHHTCCSEEEEECCTTSHHHH-HHHHH
T ss_pred hhH--HHHHHhhCCCCEEEEcccCCC----CCCEEEEchH---HHHHHHHHHHHHCCCCEEEEEeCCCCCccHH-HHHHH
Confidence 221 222334568999987643211 1122344445 556667777777799999999865332 22 34577
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
|.+.+++.|+.+.....-.. +..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+.-++-+-|
T Consensus 201 f~~al~~~gi~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 270 (349)
T 1jye_A 201 WHKYLTRNQIQPIAEREGDW---SAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISV 270 (349)
T ss_dssp HHHHHHHTTCCCSEEEECCS---SHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHHcCCCccccccCCC---ChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEE
Confidence 88889998875432211111 22222233333322 3466654 556677889999999999864444433
No 141
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.07 E-value=0.0053 Score=64.33 Aligned_cols=176 Identities=13% Similarity=0.033 Sum_probs=103.1
Q ss_pred HHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeee----ccccceeeccccceeccEEEEEe
Q 047109 451 VFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTIT----ANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 451 l~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+.+.+++. |+ ++++.+.. ..+++..++..|.+|++|+++.+.... .++.....++.++...+..++++
T Consensus 35 l~~~~~~~-G~--~v~~~~~~-----~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~ 106 (348)
T 3uif_A 35 FPEELRKQ-GI--KVEWVPAA-----MASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVP 106 (348)
T ss_dssp HHHHHHHT-TE--EEEEEEEC-----TTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEE
T ss_pred HHHHHHhc-CC--eEEEEecc-----cCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEE
Confidence 55566665 75 55553321 012466789999999999998554332 34445555666677777788887
Q ss_pred cCCCCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHH
Q 047109 527 TDRNNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVV 606 (808)
Q Consensus 527 ~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~ 606 (808)
+.++..
T Consensus 107 ~~s~i~-------------------------------------------------------------------------- 112 (348)
T 3uif_A 107 KNSTAK-------------------------------------------------------------------------- 112 (348)
T ss_dssp TTCCCC--------------------------------------------------------------------------
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 654321
Q ss_pred HHHHHHHHHHHHHhhhhhheeeeehhhhhccCCceeeecCCcHHHhh----hccCCCcccccccC-CHHHHHHHHhcCCC
Q 047109 607 IVWVFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQLGSFVPGAL----SNLNFKDSRLKKYN-SAEEFANALSKGSK 681 (808)
Q Consensus 607 ~~w~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 681 (808)
+++++ ++++|++..++.....+ ++.+.....+.... +..+...+|.+|+
T Consensus 113 ----------------------s~~DL---kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~- 166 (348)
T 3uif_A 113 ----------------------SIKDL---KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT- 166 (348)
T ss_dssp ----------------------SGGGG---TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS-
T ss_pred ----------------------CHHHc---CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC-
Confidence 45565 89999998888764433 44454433333222 5678899998888
Q ss_pred CCceEEEEechhhHHHHHhcCC-CceEEecccc--ccccceEEEEeCC----CC-ChHHHHHHHHh
Q 047109 682 NGGISAIIDEIPYIKAFLAKYS-TDYTMIAPNY--TTTSGFGFVFQKG----SP-LVHDISRAIAK 739 (808)
Q Consensus 682 ~~~~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~~~k~----sp-~~~~~~~~i~~ 739 (808)
+|+++........ ..... ..+....... . ....+++++++ .| ..+.|.+++.+
T Consensus 167 ---vDa~~~~~~~~~~-~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 167 ---VDGFFSLFDSYIL-EDRGVGKIIWSTKTAPVDW-KLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp ---SSEEEESTTHHHH-HHTTSEEEEEEGGGSCGGG-SCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred ---CCEEEechHHHHH-HhcCCcEEEEeccccCCCC-cceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 9999887765532 22221 1121112111 1 23456777775 45 55555554443
No 142
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.06 E-value=0.0049 Score=63.19 Aligned_cols=203 Identities=10% Similarity=0.034 Sum_probs=119.0
Q ss_pred EEEEEEec------CCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCC
Q 047109 3 HVGVILDM------RSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMT 76 (808)
Q Consensus 3 ~IG~i~~~------~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~ 76 (808)
+||+++|. +.+.-.....+++-+.++.+ +++ .+.++..++..-.+....+.+ .+|.+||-.. .
T Consensus 24 ~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~-~ 92 (305)
T 3huu_A 24 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRG-------YST--RMTVSENSGDLYHEVKTMIQS-KSVDGFILLY-S 92 (305)
T ss_dssp EEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHT-------CEE--EECCCSSHHHHHHHHHHHHHT-TCCSEEEESS-C
T ss_pred EEEEEeCCCccccccCcHHHHHHHHHHHHHHHCC-------CEE--EEEeCCCChHHHHHHHHHHHh-CCCCEEEEeC-C
Confidence 69999997 23333345556665555432 343 445565555554444444554 4898888533 2
Q ss_pred hhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHH
Q 047109 77 PTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIP 154 (808)
Q Consensus 77 s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~ 154 (808)
.... .....+...++|+|......+. . .+........ ..++.+++.+...|.++++++...... .. .-.+
T Consensus 93 ~~~~-~~~~~l~~~~iPvV~i~~~~~~--~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~ 164 (305)
T 3huu_A 93 LKDD-PIEHLLNEFKVPYLIVGKSLNY--E-NIIHIDNDNI---DAAYQLTQYLYHLGHRHILFLQESGHYAVTE-DRSV 164 (305)
T ss_dssp BTTC-HHHHHHHHTTCCEEEESCCCSS--T-TCCEEECCHH---HHHHHHHHHHHHTTCCSEEEEEESSCBHHHH-HHHH
T ss_pred cCCc-HHHHHHHHcCCCEEEECCCCcc--c-CCcEEEeCHH---HHHHHHHHHHHHCCCCeEEEEcCCcccchhH-HHHH
Confidence 2222 2333445569999998654321 1 2334455656 677788888888899999999876533 22 3467
Q ss_pred HHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHh-cC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 155 YLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSML-KS--SETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
.|.+.+++.|+.+.. .+.. +...-...+.++ .+ ..+++|+ +.+...|..+++++++.|+..++ ...++-+
T Consensus 165 Gf~~~l~~~g~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vig~D 238 (305)
T 3huu_A 165 GFKQYCDDVKISNDC--VVIK---SMNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp HHHHHHHHTTCCCCE--EEEC---SHHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCccc--EEec---CcHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEEEEC
Confidence 888999999876543 1211 111133334444 32 3556654 56777888999999999986443 3344333
No 143
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.04 E-value=0.015 Score=61.06 Aligned_cols=205 Identities=10% Similarity=0.140 Sum_probs=120.6
Q ss_pred EEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|.... .-.....+++-+.++. ++++ .+.++..++..-.+....+++. ++.+||-.. .....
T Consensus 72 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiI~~~-~~~~~- 139 (355)
T 3e3m_A 72 FVGLLLPSLNNLHFAQTAQSLTDVLEQG-------GLQL--LLGYTAYSPEREEQLVETMLRR-RPEAMVLSY-DGHTE- 139 (355)
T ss_dssp EEEEEESCSBCHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-CCSEEEEEC-SCCCH-
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEeC-CCCCH-
Confidence 59999986442 2223444555444432 2344 4446666777666666667665 888877533 22222
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc---cccCcHHHHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW---GSDNIIPYLFD 158 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~---g~~~~~~~~~~ 158 (808)
.....+...++|+|......+. ........++. ..+..+++.+...|.++++++..+... .. .-.+.|.+
T Consensus 140 ~~~~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~---~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~-~R~~Gf~~ 212 (355)
T 3e3m_A 140 QTIRLLQRASIPIVEIWEKPAH---PIGHTVGFSNE---RAAYDMTNALLARGFRKIVFLGEKDDDWTRGA-ARRAGFKR 212 (355)
T ss_dssp HHHHHHHHCCSCEEEESSCCSS---CSSEEEECCHH---HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHH-HHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCccCC---CCCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEccCcccChhHH-HHHHHHHH
Confidence 2234445679999987432111 12234455656 677778888888899999999875432 23 45688899
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWI 227 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i 227 (808)
.+++.|+.+.....+.....+.++-...+.++.+ ..+++|+ +.+...|..+++++++.|+.-++-+-|
T Consensus 213 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 282 (355)
T 3e3m_A 213 AMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSV 282 (355)
T ss_dssp HHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999987644211111101123333333333332 3566644 567778889999999999865444433
No 144
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.03 E-value=0.021 Score=59.18 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=119.0
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||+++|... ++-.....+++-+.++.+ +++.+ .++.. +..-.+....+++. ++.+||-.. .
T Consensus 66 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~--~~~~~-~~~~~~~~~~l~~~-~vdGiIi~~-~----- 128 (333)
T 3jvd_A 66 LVGVIVPDLSNEYYSESLQTIQQDLKAAG-------YQMLV--AEANS-VQAQDVVMESLISI-QAAGIIHVP-V----- 128 (333)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEEEE--EECCS-HHHHHHHHHHHHHH-TCSEEEECC-C-----
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHHCC-------CEEEE--ECCCC-hHHHHHHHHHHHhC-CCCEEEEcc-h-----
Confidence 6999999643 333445666666665542 34443 44444 55555555666665 899999876 4
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHHh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFDS 159 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~~ 159 (808)
...+...++|+|......+. . .+.....++. ..+..+++.+...|.++++++...... .. .-.+.|.+.
T Consensus 129 --~~~~~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~~a 199 (333)
T 3jvd_A 129 --VGSIAPEGIPMVQLTRGELG-P--GFPRVLCDDE---AGFFQLTESVLGGSGMNIAALVGEESLSTTQ-ERMRGISHA 199 (333)
T ss_dssp --TTCCC-CCSCEEEECC-----C--CSCEEEECHH---HHHHHHHHHHCCSSSCEEEEEESCTTSHHHH-HHHHHHHHH
T ss_pred --HHHHhhCCCCEEEECccCCC-C--CCCEEEEChH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHHHHHHH
Confidence 34456679999998654332 1 2233455555 677778888888899999999866432 22 456888899
Q ss_pred hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeE
Q 047109 160 LHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHMSHALASHLFLNAKKLGMMSKGYS 225 (808)
Q Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~ 225 (808)
+++.|+.... ... ..+.++-...+.++.+. .+++|+ +++...+..+++++++.|+.-++-+
T Consensus 200 l~~~g~~~~~--~~~--~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 200 ASIYGAEVTF--HFG--HYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp HHHTTCEEEE--EEC--CSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHCCCCEEE--ecC--CCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCce
Confidence 9999987221 111 12333444444444332 266654 5667778899999999998644433
No 145
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.01 E-value=0.02 Score=57.62 Aligned_cols=196 Identities=12% Similarity=0.012 Sum_probs=111.7
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++. ++++.+. ++..++..-. ++ ++.+||-.. .....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~--~~~~~~~~~~----~~----~vdgiI~~~-~~~~~ 70 (277)
T 3cs3_A 9 NIIGVYLADYGGSFYGELLEGIKKGLALF-------DYEMIVC--SGKKSHLFIP----EK----MVDGAIILD-WTFPT 70 (277)
T ss_dssp CEEEEEECSSCTTTHHHHHHHHHHHHHTT-------TCEEEEE--ESTTTTTCCC----TT----TCSEEEEEC-TTSCH
T ss_pred cEEEEEecCCCChhHHHHHHHHHHHHHHC-------CCeEEEE--eCCCCHHHHh----hc----cccEEEEec-CCCCH
Confidence 47999998633 33333445555544332 2455443 3332322111 11 566666432 22122
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLFD 158 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~~ 158 (808)
..+.. +...+||+|......+. . .+..+..++. ..+..+++.+...|.++++++..+... .. .-.+.|.+
T Consensus 71 ~~~~~-l~~~~iPvV~~~~~~~~-~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~ 142 (277)
T 3cs3_A 71 KEIEK-FAERGHSIVVLDRTTEH-R--NIRQVLLDNR---GGATQAIEQFVNVGSKKVLLLSGPEKGYDSQ-ERLAVSTR 142 (277)
T ss_dssp HHHHH-HHHTTCEEEESSSCCCS-T--TEEEEEECHH---HHHHHHHHHHHHTTCSCEEEEECCTTSHHHH-HHHHHHHH
T ss_pred HHHHH-HHhcCCCEEEEecCCCC-C--CCCEEEeCcH---HHHHHHHHHHHHcCCceEEEEeCCccCccHH-HHHHHHHH
Confidence 23333 33478999998654332 1 2334455555 667778888877899999999865432 22 44678888
Q ss_pred hhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC---CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 159 SLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS---ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
.+++.|+.+. . +.. ..+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.|+
T Consensus 143 ~l~~~g~~~~-~--~~~-~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 143 ELTRFGIPYE-I--IQG-DFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHTTCCEE-E--EEC-CSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHcCCCee-E--EeC-CCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 8999998765 1 111 12334444555555443 456544 5667778899999999998544444443
No 146
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=96.94 E-value=0.03 Score=58.30 Aligned_cols=200 Identities=9% Similarity=-0.018 Sum_probs=115.6
Q ss_pred CeEEEEEEecC---CcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 1 EVHVGVILDMR---SWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 1 ~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
+.+||++.|-. .++-....+|++.+.++.+. ++++.+.++..+.....+...+++++ ++..||+.. .
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~-------~~~~~~~e~~~~~~d~~~~l~~l~~~-g~d~Ii~~g-~- 95 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGD-------KVETTFLENVAEGADAERSIKRIARA-GNKLIFTTS-F- 95 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT-------TEEEEEECSCCTTHHHHHHHHHHHHT-TCSEEEECS-G-
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCC-------ceEEEEEecCCCHHHHHHHHHHHHHC-CCCEEEECC-H-
Confidence 46899999631 12334456666666666542 25566666655555667777788876 899999864 3
Q ss_pred hHHHHHHHhcCCC-CccEEeccCCCCc-ccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHH
Q 047109 78 TGAHILAEIGSKA-KIPVISLYATLPS-SLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPY 155 (808)
Q Consensus 78 ~~~~~~~~~~~~~-~iP~is~~~~~~~-~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 155 (808)
....++..++..+ ++|++-.....+. ++..++++. .|+..++-.++.++.. -++|++|..............
T Consensus 96 ~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~----~eg~ylaG~~A~~~tk--~~kIGfVgg~~~p~v~~~~~G 169 (356)
T 3s99_A 96 GYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARF----YEGRYVQGVIAAKMSK--KGIAGYIGSVPVPEVVQGINS 169 (356)
T ss_dssp GGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECH----HHHHHHHHHHHHHHCS--SCEEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEech----hHHHHHHHHHHHHhcC--CCEEEEECCCccHHHHHHHHH
Confidence 3345566666664 8888876542211 011133333 2222444444444433 479999986543221135677
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl 219 (808)
|.+.++..+..+.....+..+..+...-....+.+.+.++|+|+...+.. .++++|++.|.
T Consensus 170 F~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 170 FMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 88888887655443333322012333333445555567899888876654 57899998874
No 147
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=96.90 E-value=0.017 Score=58.09 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=122.3
Q ss_pred eEEEEEEecCC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 2 VHVGVILDMRS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
-+||+++|... +.-.....+++-+.++. ++++ +.+.++..++..-.+....+++. ++.+||-.. .
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~-~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~---- 76 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKE-------GYTA-LISFSTNSDVKKYQNAIINFENN-NVDGIITSA-F---- 76 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEE-EEEECSSCCHHHHHHHHHHHHHT-TCSEEEEEC-C----
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHC-------CCCE-EEEEeCCCChHHHHHHHHHHHhC-CCCEEEEcc-h----
Confidence 36999999643 33334455555554443 2330 34567777777766666667665 888888532 1
Q ss_pred HHHHHhcCCCCccEEeccCC-CCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHH
Q 047109 81 HILAEIGSKAKIPVISLYAT-LPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLF 157 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~-~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~ 157 (808)
....+...++|+|..... .+. . .+ ....... ..++.+++.+. .|.++++++...... .. .-.+.|.
T Consensus 77 --~~~~~~~~~iPvV~~~~~~~~~-~--~~-~V~~D~~---~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~-~R~~Gf~ 145 (277)
T 3hs3_A 77 --TIPPNFHLNTPLVMYDSANIND-D--IV-RIVSNNT---KGGKESIKLLS-KKIEKVLIQHWPLSLPTIR-ERIEAMT 145 (277)
T ss_dssp --CCCTTCCCSSCEEEESCCCCCS-S--SE-EEEECHH---HHHHHHHHTSC-TTCCEEEEEESCTTSHHHH-HHHHHHH
T ss_pred --HHHHHHhCCCCEEEEcccccCC-C--CE-EEEEChH---HHHHHHHHHHH-hCCCEEEEEeCCCcCccHH-HHHHHHH
Confidence 112346679999998765 332 1 23 5666666 77777888878 999999999865332 22 4467888
Q ss_pred HhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 158 DSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 158 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
+.+++.|+.+... .... +. + ...+.++.+ ..+++| ++.+...+..+++++++.|+.-++-+-++
T Consensus 146 ~~l~~~g~~~~~~-~~~~---~~-~-~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 146 AEASKLKIDYLLE-ETPE---NN-P-YISAQSALNKSNQFDAI-ITVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHTTCEEEEE-ECCS---SC-H-HHHHHHHHHTGGGCSEE-ECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCCCC-CccC---Cc-h-HHHHHHHHcCCCCCCEE-EECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999887654 3322 11 2 333333332 345654 45667778899999999998644444433
No 148
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=96.80 E-value=0.03 Score=60.09 Aligned_cols=205 Identities=5% Similarity=-0.014 Sum_probs=118.2
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
-+||+++|.+.+.-.....|++-+.++.+ +.+.+...++. .. ....+.+ .+|.+||-.. ...
T Consensus 26 ~~Igvv~~~~~~f~~~l~~gi~~~a~~~g-------~~~~i~~~~~~---~~---~i~~l~~-~~vDGiIi~~-~~~--- 87 (412)
T 4fe7_A 26 HRITLLFNANKAYDRQVVEGVGEYLQASQ-------SEWDIFIEEDF---RA---RIDKIKD-WLGDGVIADF-DDK--- 87 (412)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHHT-------CCEEEEECC-C---C------------CCCSEEEEET-TCH---
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhcC-------CCeEEEecCCc---cc---hhhhHhc-CCCCEEEEec-CCh---
Confidence 46999999666654556677776666553 34444332221 11 1233444 4788888644 322
Q ss_pred HHHHhcCCCCccEEeccCCCCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc----cccCcHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW----GSDNIIPY 155 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~----g~~~~~~~ 155 (808)
.....+...++|+|......+. ..+ .+-.+...+. ..++.+++.+...|.++++++...... .. .-.+.
T Consensus 88 ~~~~~l~~~~iPvV~i~~~~~~-~~~~~~~~~V~~D~~---~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~-~R~~G 162 (412)
T 4fe7_A 88 QIEQALADVDVPIVGVGGSYHL-AESYPPVHYIATDNY---ALVESAFLHLKEKGVNRFAFYGLPESSGKRWAT-EREYA 162 (412)
T ss_dssp HHHHHHTTCCSCEEEEEECCSS-GGGSCSSEEEEECHH---HHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHH-HHHHH
T ss_pred HHHHHHhhCCCCEEEecCCccc-cccCCCCCEEEeCHH---HHHHHHHHHHHHcCCceEEEecccccccccHHH-HHHHH
Confidence 2344566779999998764432 111 3334555666 777888888888899999999865432 23 45678
Q ss_pred HHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHh-cC-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 047109 156 LFDSLHDNDIDIARRITISMSSNTDDQVIEKLSML-KS-SETKVFVVHMSHALASHLFLNAKKLGMMSKG-YSWIVTA 230 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l-~~-~~~~viil~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 230 (808)
+.+.+++.|+.............+.......+.++ +. ..+++| ++++...|..+++++++.|+..++ ...++-+
T Consensus 163 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI-~~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGI-IAVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEE-EESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEE-EEEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 88999999876432221111011222333333333 22 356654 466777888999999999986444 4444433
No 149
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=96.69 E-value=0.2 Score=50.75 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=105.5
Q ss_pred eEEEEEEec--CC-cchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 2 VHVGVILDM--RS-WAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 2 i~IG~i~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
.+||++.|. +. ++-.....|++-+.++. ++++ .+.++..++....+....+++. ++.+||... ...
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~l~~l~~~-~vdgIi~~~-~~~ 74 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-------DVDV--VLEEGVNSEQKAHRRIKELVDG-GVNLIFGHG-HAF 74 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHS-------CCEE--EEECCCCSHHHHHHHHHHHHHT-TCCEEEECS-THH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-------CCeE--EEEeCCCCHHHHHHHHHHHHHC-CCCEEEEcC-HhH
Confidence 579999972 22 34334455655554443 2343 3445545555555556666655 899999864 332
Q ss_pred HHHHHHHhcCCC-CccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHh-cCCcEEEEEEecCCccccCcHHHH
Q 047109 79 GAHILAEIGSKA-KIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRV-FKWKHVILIYEDNTWGSDNIIPYL 156 (808)
Q Consensus 79 ~~~~~~~~~~~~-~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~-~~w~~v~ii~~d~~~g~~~~~~~~ 156 (808)
...+..++..+ ++|++......+. . .+-....... .-+..+..++.+ .+-+++++|..... . ...+.|
T Consensus 75 -~~~~~~~~~~~p~~p~v~id~~~~~--~-~~~~v~~d~~---~g~~lag~la~~l~~~~~Ig~i~g~~~--~-~r~~Gf 144 (296)
T 2hqb_A 75 -AEYFSTIHNQYPDVHFVSFNGEVKG--E-NITSLHFEGY---AMGYFGGMVAASMSETHKVGVIAAFPW--Q-PEVEGF 144 (296)
T ss_dssp -HHHHHTTTTSCTTSEEEEESCCCCS--S-SEEEEEECCH---HHHHHHHHHHHHTCSSSEEEEEESCTT--C-HHHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEecCcCC--C-CEEEEEechH---HHHHHHHHHHHhhccCCeEEEEcCcCc--h-hhHHHH
Confidence 23345555543 8998887543211 1 2222333333 222233333333 35689999985432 1 256778
Q ss_pred HHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 047109 157 FDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLG 218 (808)
Q Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~g 218 (808)
.+.+++.|.. .....+..+..+...-....+++.+.++++|+ +.....+..+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 8888888875 32222221011222333444555556788655 455666778889999987
No 150
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.59 E-value=0.0078 Score=62.78 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=68.8
Q ss_pred cCCceeeecCCcHHH-----hhhccCCCc--ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEe
Q 047109 637 SRDNIGSQLGSFVPG-----ALSNLNFKD--SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMI 709 (808)
Q Consensus 637 ~~~~i~~~~~s~~~~-----~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 709 (808)
++++|++..+++... ++++.+... .+++.+ +..+....|.+|+ +|+++....+......+........
T Consensus 153 kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~ 227 (341)
T 3un6_A 153 DDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEKLGKGKTLKH 227 (341)
T ss_dssp SCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHSSCCEEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHhcCCeEEEEe
Confidence 788999987654333 334444432 233333 4567889998888 9999988877766555543222222
Q ss_pred ccccccccc-eEEEEeCC----CC-----ChHHHHHHHHhhhhcCchHHHHHHhcCC
Q 047109 710 APNYTTTSG-FGFVFQKG----SP-----LVHDISRAIAKLREEGTLRKIEIEWFND 756 (808)
Q Consensus 710 ~~~~~~~~~-~~~~~~k~----sp-----~~~~~~~~i~~l~e~G~~~~~~~~~~~~ 756 (808)
...+....+ ..++++++ .| +.+.+++++.++.+++.-.++..+|+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 284 (341)
T 3un6_A 228 GDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQ 284 (341)
T ss_dssp GGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSS
T ss_pred ccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence 222220222 55666654 44 6666777777787776444666777754
No 151
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.52 E-value=0.0033 Score=64.35 Aligned_cols=197 Identities=9% Similarity=0.057 Sum_probs=118.1
Q ss_pred eEEEEEEecCC-cchh-hHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhH
Q 047109 2 VHVGVILDMRS-WAGK-ISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTG 79 (808)
Q Consensus 2 i~IG~i~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~ 79 (808)
-+||+++|... +.=. ....+++-+.++.+ +++ .+.++..++....+....+++. +|.+||-.. ....
T Consensus 14 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~-~~~~ 82 (301)
T 3miz_A 14 NTFGIITDYVSTTPYSVDIVRGIQDWANANG-------KTI--LIANTGGSSEREVEIWKMFQSH-RIDGVLYVT-MYRR 82 (301)
T ss_dssp CEEEEEESSTTTCCSCHHHHHHHHHHHHHTT-------CEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEEE-EEEE
T ss_pred CEEEEEeCCCcCcccHHHHHHHHHHHHHHCC-------CEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEec-CCcc
Confidence 36999999754 3322 56667776665542 344 4455666777666666666665 888887432 2211
Q ss_pred HHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCc--cccCcHHHHH
Q 047109 80 AHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTW--GSDNIIPYLF 157 (808)
Q Consensus 80 ~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~--g~~~~~~~~~ 157 (808)
. ....+...++|+|......+. .. .+......+. ..++.+++.+...|.++++++...... .. .-.+.|.
T Consensus 83 ~--~~~~~~~~~iPvV~~~~~~~~-~~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf~ 154 (301)
T 3miz_A 83 I--VDPESGDVSIPTVMINCRPQT-RE-LLPSIEPDDY---QGARDLTRYLLERGHRRIGYIRLNPILLGAE-LRLDAFR 154 (301)
T ss_dssp E--CCCCCTTCCCCEEEEEEECSS-TT-SSCEEEECHH---HHHHHHHHHHHTTTCCSEEEEECCTTSHHHH-HHHHHHH
T ss_pred H--HHHHHHhCCCCEEEECCCCCC-CC-CCCEEeeChH---HHHHHHHHHHHHcCCCeEEEEecCccchhHH-HHHHHHH
Confidence 1 334556679999997654333 10 1223455556 777888888888999999999865432 22 3467788
Q ss_pred HhhhcCCcEEE--EEEec---CCCCCChHHH-HHHHHHhcC--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 047109 158 DSLHDNDIDIA--RRITI---SMSSNTDDQV-IEKLSMLKS--SETKVFVVHMSHALASHLFLNAKKLGMM 220 (808)
Q Consensus 158 ~~~~~~g~~i~--~~~~~---~~~~~~~~~~-~~~l~~l~~--~~~~viil~~~~~~~~~~l~~a~~~gl~ 220 (808)
+.+++.|+.+. ....- .. ... ..+ ...+.++.+ ..+++| ++++...|..+++++++.|+.
T Consensus 155 ~al~~~g~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 155 RTTSEFGLTENDLSISLGMDGPV-GAE-NNYVFAAATEMLKQDDRPTAI-MSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHTCCGGGEEEEECEESST-TSC-EECHHHHHHHHHTSTTCCSEE-EESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCCCCcceEEEcCCCCc-Ccc-ccHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHcCCC
Confidence 88888886531 11111 11 111 111 022333322 346665 455677788999999999984
No 152
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.47 E-value=0.025 Score=58.89 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=90.4
Q ss_pred HHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeee----ccccceeeccccceeccEEEEEecCC--
Q 047109 456 IDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTIT----ANRSLYVDFTLPYTDMGIGMIVPTDR-- 529 (808)
Q Consensus 456 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~dfs~p~~~~~~~~lv~~~~-- 529 (808)
.++.|+++++ .+. ++|..++..|.+|++|+++++.... .++.....++.++...+..+++++..
T Consensus 59 ~~~~g~~v~~--~~~--------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (346)
T 3qsl_A 59 FKDEGLDVSI--ADF--------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP 128 (346)
T ss_dssp HHHTTCEEEE--EEC--------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT
T ss_pred hHhhCCeEEE--Eec--------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc
Confidence 4667875544 443 2689999999999999988765443 34555666766666667788887754
Q ss_pred CCccceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcCccccccchhhHHHHHH
Q 047109 530 NNNMWIFLKPLKPNLWLTTAALFVLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQREKLLSNWSKFVVIVW 609 (808)
Q Consensus 530 ~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~s~Ril~~~w 609 (808)
+..
T Consensus 129 ~i~----------------------------------------------------------------------------- 131 (346)
T 3qsl_A 129 GYK----------------------------------------------------------------------------- 131 (346)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred HHHHHHHHHHhhhhhheeeeehhhhhccCCceeee-cCCcHHHhh----hccCCCc--ccccccCCHHHHHHHHhcCCCC
Q 047109 610 VFVVLILTSSYTATLTSMLTVQQIKLASRDNIGSQ-LGSFVPGAL----SNLNFKD--SRLKKYNSAEEFANALSKGSKN 682 (808)
Q Consensus 610 ~~~~lil~~~Y~a~L~s~lt~~~~~~~~~~~i~~~-~~s~~~~~l----~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 682 (808)
+++++ +++++++. .++.....+ ++.+... .+++.+....+...+|.+|+
T Consensus 132 -------------------s~~DL---~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~-- 187 (346)
T 3qsl_A 132 -------------------GPADL---KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ-- 187 (346)
T ss_dssp -------------------SGGGG---TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS--
T ss_pred -------------------ChHHc---CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC--
Confidence 45565 89999998 576654333 4444432 33455666678899998888
Q ss_pred CceEEEEechhhHHHHHhcC
Q 047109 683 GGISAIIDEIPYIKAFLAKY 702 (808)
Q Consensus 683 ~~~~a~~~~~~~~~~~~~~~ 702 (808)
+|+++...........+.
T Consensus 188 --vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 188 --IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp --CSEEEEETTHHHHHHHTT
T ss_pred --ccEEEecchhHHHHHhCC
Confidence 999998877665544443
No 153
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.32 E-value=0.12 Score=53.19 Aligned_cols=211 Identities=12% Similarity=0.125 Sum_probs=125.6
Q ss_pred CeEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcc------eEEEEEEec---CC--CCHHHHHHHHHHhhhcCCeEE
Q 047109 1 EVHVGVILDMRSWAGKISNSCISMAISDFYALNTHYK------TRLVLHSRD---SK--GDPLHALTTVLNLMQNVDLQA 69 (808)
Q Consensus 1 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~------~~l~~~~~d---~~--~~~~~a~~~a~~li~~~~v~a 69 (808)
+.|||++.+ +........++++-.+++-|..++... ..++.++.. +. ..-..+++...++..+.++.+
T Consensus 12 ~~~igi~t~-t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk~ 90 (371)
T 3qi7_A 12 DFKVAVVTQ-PLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQA 90 (371)
T ss_dssp CEEEEEEEC-CTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEEE
T ss_pred CeEEEEEcC-CcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCeE
Confidence 368998876 344456788999999999998654221 123333333 32 222346888888899999999
Q ss_pred EEecCCChhHHHHHHHhcCCCCccEEeccCC---CCccccc--ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEec
Q 047109 70 IICTEMTPTGAHILAEIGSKAKIPVISLYAT---LPSSLTS--YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYED 144 (808)
Q Consensus 70 iiG~~~~s~~~~~~~~~~~~~~iP~is~~~~---~~~~ls~--~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d 144 (808)
||... ...........+.+.+++.|-..+. ++. ..+ .-+.+...+. .-+..+++.+...|-+++++|...
T Consensus 91 II~n~-~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~-~i~~~~di~V~~Dn~---~Ggy~A~~~Li~~Ghk~Ia~Isgp 165 (371)
T 3qi7_A 91 IVVST-DQAGLLPALQKVKEKRPEIITISAPMGDDKN-QLSQFVDVNLGVSAE---ERGKVLAERSKEMGAKAFIHYAST 165 (371)
T ss_dssp EEEEC-SSCCCHHHHHHHHHHCTTSEEEESSCCSCHH-HHHHHSSEEEECCHH---HHHHHHHHHHHHTTCSCEEEEEET
T ss_pred EEEEC-CCcchHHHHHHHHhcCCCEEEEeccccccch-hhcccCceEEEeChH---HHHHHHHHHHHHCCCCEEEEEecc
Confidence 99865 4322223334455445554433322 111 111 1123444444 666667789999999999999865
Q ss_pred CCccc---cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHH---HHHHH-----hcCCCCeEEEEEcCHHHHHHHHHH
Q 047109 145 NTWGS---DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVI---EKLSM-----LKSSETKVFVVHMSHALASHLFLN 213 (808)
Q Consensus 145 ~~~g~---~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~---~~l~~-----l~~~~~~viil~~~~~~~~~~l~~ 213 (808)
..... ..=.+.++++++++|+.+.... .+. ...+..+. ..+.. ++..+..--|++++...|..++++
T Consensus 166 ~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~-~~d-~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ika 243 (371)
T 3qi7_A 166 DDLKDVNIAKRLEMIKETCKNIGLPFVQVN-TPN-INTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTK 243 (371)
T ss_dssp TGGGSHHHHHHHHHHHHHHHHTTCCEEEEE-ECC-CSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHcCCCceeec-CCC-CchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHH
Confidence 43221 0235678999999999876543 221 11222222 22221 112233235778888899999999
Q ss_pred HHHcCC
Q 047109 214 AKKLGM 219 (808)
Q Consensus 214 a~~~gl 219 (808)
+.+.|+
T Consensus 244 l~e~Gi 249 (371)
T 3qi7_A 244 ALELKY 249 (371)
T ss_dssp HHHHCC
T ss_pred HHHcCC
Confidence 999996
No 154
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.02 E-value=0.018 Score=58.80 Aligned_cols=77 Identities=8% Similarity=-0.018 Sum_probs=52.1
Q ss_pred eEEEEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEec-eeeeccc---cceeecccccee
Q 047109 443 IVKGFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGE-TTITANR---SLYVDFTLPYTD 518 (808)
Q Consensus 443 ~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~-~~~t~~r---~~~~dfs~p~~~ 518 (808)
.+.|+.+.+-+-+.++.|+++ ++.+.. ....++..|.+|++|+++++ ......| .....++.++..
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v--~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDV--DIVFPT--------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEE--EEECCS--------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred ccHHHHHHHHcChHHHcCCcE--EEecCC--------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 445788888888899999754 444431 33589999999999999876 2222233 334556666666
Q ss_pred ccEEEEEecCC
Q 047109 519 MGIGMIVPTDR 529 (808)
Q Consensus 519 ~~~~~lv~~~~ 529 (808)
.+..+++++.+
T Consensus 86 ~~~~l~~~~~s 96 (302)
T 3ix1_A 86 PLNHVMFLAEQ 96 (302)
T ss_dssp CCEEEEEEGGG
T ss_pred CCEEEEEECCC
Confidence 67788887653
No 155
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.73 E-value=0.1 Score=50.71 Aligned_cols=128 Identities=7% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHhhhcCCeEEEEecCCChhHH--------HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHH
Q 047109 55 LTTVLNLMQNVDLQAIICTEMTPTGA--------HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGI 126 (808)
Q Consensus 55 ~~~a~~li~~~~v~aiiG~~~~s~~~--------~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~ 126 (808)
.+++.+|.. .++.+|+-+. ++++. .....+.+..++|+++. +.++
T Consensus 56 ~~aa~~L~~-ag~d~i~~aC-tsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~ 108 (240)
T 3ixl_A 56 VDHARRLQK-QGAAVVSLMC-TSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAV 108 (240)
T ss_dssp HHHHHHHHH-TTEEEEEECC-HHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHH
T ss_pred HHHHHHhcc-CCCCEEEECC-cHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHH
Confidence 334455554 4999999875 45443 23345555667888772 3567
Q ss_pred HHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCC------CCChHHHHHHHHH-h-cCCCCeEE
Q 047109 127 ADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMS------SNTDDQVIEKLSM-L-KSSETKVF 198 (808)
Q Consensus 127 ~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~------~~~~~~~~~~l~~-l-~~~~~~vi 198 (808)
++.++..|-++|+++.. |.. ...+.+++.+++.|+.+......... ..+...+...+.+ + ...++|.|
T Consensus 109 ~~al~~~g~~rvglltp---y~~-~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 109 LNGLRALGVRRVALATA---YID-DVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp HHHHHHTTCSEEEEEES---SCH-HHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred HHHHHHhCCCEEEEEeC---ChH-HHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 77788889999999974 666 66788899999999998765543320 1134567777778 7 77889999
Q ss_pred EEEcCHHHHHHHHHH
Q 047109 199 VVHMSHALASHLFLN 213 (808)
Q Consensus 199 il~~~~~~~~~~l~~ 213 (808)
|+.|..-....++.+
T Consensus 185 vL~CT~l~~l~~i~~ 199 (240)
T 3ixl_A 185 LLSSGGLLTLDAIPE 199 (240)
T ss_dssp EEECTTSCCTTHHHH
T ss_pred EEeCCCCchhhhHHH
Confidence 998866443334343
No 156
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.65 E-value=0.097 Score=54.95 Aligned_cols=201 Identities=10% Similarity=0.055 Sum_probs=107.1
Q ss_pred EEEEEEecCCcc--hhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH
Q 047109 3 HVGVILDMRSWA--GKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA 80 (808)
Q Consensus 3 ~IG~i~~~~~~~--g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~ 80 (808)
+||+++|..... .......+.-++++.=+ ++.+.+...+...+. .-.+....+. ..+|.+||-.. .....
T Consensus 70 ~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-----g~~~~~~~~~~~~~~-~~~~~~~~l~-~~~vdGiIi~~-~~~~~ 141 (366)
T 3h5t_A 70 AIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-----DTQLTLIPASPASSV-DHVSAQQLVN-NAAVDGVVIYS-VAKGD 141 (366)
T ss_dssp EEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-----SCEEEEEECCCCTTC-CHHHHHHHHH-TCCCSCEEEES-CCTTC
T ss_pred EEEEEecCCccccccCHHHHHHHHHHHHHHh-----hCCEEEEEcCCCccH-HHHHHHHHHH-hCCCCEEEEec-CCCCh
Confidence 699999964221 11122222223332211 456666655532221 1222333344 44777777432 21111
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEec----------------
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYED---------------- 144 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d---------------- 144 (808)
..+ ..+...++|+|......+. ..+-.....+. ..+..+++.+...|.++++++...
T Consensus 142 ~~~-~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~---~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~ 214 (366)
T 3h5t_A 142 PHI-DAIRARGLPAVIADQPARE---EGMPFIAPNNR---KAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLE 214 (366)
T ss_dssp HHH-HHHHHHTCCEEEESSCCSC---TTCCEEEECHH---HHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHH
T ss_pred HHH-HHHHHCCCCEEEECCccCC---CCCCEEEeChH---HHHHHHHHHHHHCCCCcEEEEecccccccccCcccccccc
Confidence 222 2334458999987653321 12233455555 667778888888899999999832
Q ss_pred ---CCccccCcHHHHHHhhhcCCcEEE---EEEecCCCCCChHHHHHHHHHhc--CCCCeEEEEEcCHHHHHHHHHHHHH
Q 047109 145 ---NTWGSDNIIPYLFDSLHDNDIDIA---RRITISMSSNTDDQVIEKLSMLK--SSETKVFVVHMSHALASHLFLNAKK 216 (808)
Q Consensus 145 ---~~~g~~~~~~~~~~~~~~~g~~i~---~~~~~~~~~~~~~~~~~~l~~l~--~~~~~viil~~~~~~~~~~l~~a~~ 216 (808)
..... .-.+.|.+.+++.|+.+. ....-.. +.+.-...+.++. ...+++|| +++...|..+++++++
T Consensus 215 ~~~~~~~~-~R~~Gf~~al~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~ 289 (366)
T 3h5t_A 215 NAQYQVQR-DRVRGAMEVFIEAGIDPGTVPIMECWIN---NRQHNFEVAKELLETHPDLTAVL-CTVDALAFGVLEYLKS 289 (366)
T ss_dssp TCCCTTHH-HHHHHHHHHHHHHTCCGGGSCEEEESSC---CHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHH
T ss_pred ccccchHH-HHHHHHHHHHHHCCCCCCcceEEEcCCC---CHHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHH
Confidence 11112 345778888888886532 1111111 3333333333332 23566644 4667778899999999
Q ss_pred cCCCCCC
Q 047109 217 LGMMSKG 223 (808)
Q Consensus 217 ~gl~~~~ 223 (808)
.|+.-++
T Consensus 290 ~G~~vP~ 296 (366)
T 3h5t_A 290 VGKSAPA 296 (366)
T ss_dssp TTCCTTT
T ss_pred cCCCCCC
Confidence 9985443
No 157
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=95.57 E-value=0.0098 Score=49.35 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeee
Q 047109 553 VLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTV 630 (808)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~ 630 (808)
++.+.+++++++..+ +....++.+++|+++.++.--+ ...|.+..+|++..+|+++++.+.+...+.+++.++.
T Consensus 20 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 20 EEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677776542 2334578999999999988766 4468999999999999999999999999999998875
Q ss_pred hh
Q 047109 631 QQ 632 (808)
Q Consensus 631 ~~ 632 (808)
..
T Consensus 96 ~~ 97 (103)
T 2k1e_A 96 RE 97 (103)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 158
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.34 E-value=0.033 Score=47.74 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=58.0
Q ss_pred HHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeee
Q 047109 554 LTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTV 630 (808)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~ 630 (808)
+.+.+++.+|+..+ ++...++.+++|++..++.--| ...|.+..+|++..+|+++++.+.+...+++++.++-
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665432 2334679999999999998765 4478999999999999999999999999999988754
No 159
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=95.23 E-value=0.36 Score=49.01 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=69.4
Q ss_pred Cceeee-cCCcHHHh----hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEe---c
Q 047109 639 DNIGSQ-LGSFVPGA----LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMI---A 710 (808)
Q Consensus 639 ~~i~~~-~~s~~~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~---~ 710 (808)
..+|.. .|+..+.. .+..+.. ...++|....+.+.+|..|+ +|+.+.+......+++.. +++.+ .
T Consensus 140 ~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~~~~i~~g--~lr~Lav~~ 212 (312)
T 2f5x_A 140 ISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNTTQQITSG--KVKAYAVTS 212 (312)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTT--SSEEEEECS
T ss_pred eEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCC----ccEEEechHHHHHHHHcC--CeEEEEEcC
Confidence 456655 35543322 2333332 23468999999999999998 999998876665555432 22222 1
Q ss_pred --------c--c--------cccccceEEEEeCCCC--ChHHHHHHHHhhhhcCchHHHHHHh
Q 047109 711 --------P--N--------YTTTSGFGFVFQKGSP--LVHDISRAIAKLREEGTLRKIEIEW 753 (808)
Q Consensus 711 --------~--~--------~~~~~~~~~~~~k~sp--~~~~~~~~i~~l~e~G~~~~~~~~~ 753 (808)
+ . +.....++++.|++-| ..+++++++.++.+++.+.+..+++
T Consensus 213 ~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 213 LKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp SSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred ccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 1 0 1102246889999966 9999999999999998777655544
No 160
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=94.72 E-value=0.065 Score=47.23 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeee
Q 047109 554 LTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLT 629 (808)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt 629 (808)
+.+.+++.+++.. .+....++.+++|+++.++.--| ...|.+..+|++.++|+++++.+.+...+.+.+.+.
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555433 22334678999999999998755 447899999999999999999999999999999884
No 161
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=94.59 E-value=0.52 Score=47.57 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=60.8
Q ss_pred ccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEe---ccc------------------cccccceEE
Q 047109 663 LKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMI---APN------------------YTTTSGFGF 721 (808)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~---~~~------------------~~~~~~~~~ 721 (808)
.+.|....+.+.+|..|+ +|+.+.+......+++.. +++.+ .+. +.....+++
T Consensus 159 ~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl 232 (301)
T 2qpq_A 159 HVPYKGCGPALNDVLGSQ----IGLAVVTASSAIPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGL 232 (301)
T ss_dssp EEECSSHHHHHHHHHTTS----SSCEEEEHHHHHHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEE
T ss_pred EeccCChHHHHHHHHCCC----ccEEEEcHHHHHHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEE
Confidence 468999999999999998 999998866655444432 23322 100 110234788
Q ss_pred EEeCCCC--ChHHHHHHHHhhhhcCchHHHHHHh
Q 047109 722 VFQKGSP--LVHDISRAIAKLREEGTLRKIEIEW 753 (808)
Q Consensus 722 ~~~k~sp--~~~~~~~~i~~l~e~G~~~~~~~~~ 753 (808)
+.|++-| ..+++++++.++.+++.+.+..+++
T Consensus 233 ~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 233 LVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 9999966 9999999999999998877766655
No 162
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=94.53 E-value=0.5 Score=48.02 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred ccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcC-CCceEEecc------------------ccccccceEEEE
Q 047109 663 LKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKY-STDYTMIAP------------------NYTTTSGFGFVF 723 (808)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~------------------~~~~~~~~~~~~ 723 (808)
.++|....+.+.+|..|+ +|+.+.+......+++.. -.-|-+..+ .+.....++++.
T Consensus 172 ~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~a 247 (314)
T 2dvz_A 172 HVPYKGSGPAVADAVGGQ----IELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLA 247 (314)
T ss_dssp EEECSSHHHHHHHHHHTS----SSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEE
T ss_pred EcccCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEE
Confidence 468999999999999998 999998876655444432 111222110 011023468899
Q ss_pred eCCCC--ChHHHHHHHHhhhhcCchHHHHHHh
Q 047109 724 QKGSP--LVHDISRAIAKLREEGTLRKIEIEW 753 (808)
Q Consensus 724 ~k~sp--~~~~~~~~i~~l~e~G~~~~~~~~~ 753 (808)
|++-| ..+++++++.++.+++.+.+..+++
T Consensus 248 p~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 248 PKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp ETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 99966 9999999999999998777665554
No 163
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.39 E-value=0.07 Score=47.74 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=58.7
Q ss_pred HHHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeee
Q 047109 553 VLTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTV 630 (808)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~ 630 (808)
++.+.+++.+++..+ +....++.+++|+++.++.--| ...|.+..+|++.++|+++++.+.+...+.+++.++-
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667765432 2334578999999999998765 4468999999999999999999999999999988764
Q ss_pred h
Q 047109 631 Q 631 (808)
Q Consensus 631 ~ 631 (808)
.
T Consensus 140 ~ 140 (155)
T 2a9h_A 140 R 140 (155)
T ss_dssp C
T ss_pred H
Confidence 3
No 164
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.74 E-value=2.5 Score=41.80 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=75.8
Q ss_pred HHHHhhhcCCeEEEEecCCChhHHH--------HHHHhcCCC-----CccEEeccCCCCcccccceeeeccCCchhhHHH
Q 047109 57 TVLNLMQNVDLQAIICTEMTPTGAH--------ILAEIGSKA-----KIPVISLYATLPSSLTSYSIQIDQDDEASQSQA 123 (808)
Q Consensus 57 ~a~~li~~~~v~aiiG~~~~s~~~~--------~~~~~~~~~-----~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~ 123 (808)
++.+| .+.++.+|+-+. .+.... ....+.+.. ++|+++. +
T Consensus 82 aa~~L-~~~g~d~IviaC-nta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~ 134 (273)
T 2xed_A 82 CVLEI-ADAAPEVILYAC-LVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------A 134 (273)
T ss_dssp HHHHH-HTTCCSEEEECC-HHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------H
T ss_pred HHHHH-hhcCCCEEEECC-ChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------H
Confidence 34444 445899988765 443221 123333334 7888872 2
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCC------CCChHHHHHHHHHhcCCCCeE
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMS------SNTDDQVIEKLSMLKSSETKV 197 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~------~~~~~~~~~~l~~l~~~~~~v 197 (808)
.++++.++..|-++|+++. .|.. ...+.+.+.+++.|+.+......... ..+.+.+...++++...++|+
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~~-~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYMR-PLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSCH-HHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHcCCCeEEEEc---CChh-hhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 3444555666779999996 3444 45568888999999987655443320 012456777888887788999
Q ss_pred EEEE-cCHHHH
Q 047109 198 FVVH-MSHALA 207 (808)
Q Consensus 198 iil~-~~~~~~ 207 (808)
||+. |..-..
T Consensus 211 IvLg~CT~l~~ 221 (273)
T 2xed_A 211 LVISCAVQMPS 221 (273)
T ss_dssp EEEESSSSSCC
T ss_pred EEEcCCCCcch
Confidence 9999 876543
No 165
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.52 E-value=0.26 Score=49.29 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=54.3
Q ss_pred cCCceeee-cCCcHHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEech-hhHHHHHhcCCCceEEecc---
Q 047109 637 SRDNIGSQ-LGSFVPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEI-PYIKAFLAKYSTDYTMIAP--- 711 (808)
Q Consensus 637 ~~~~i~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~--- 711 (808)
++++|++. .+++....++.. ....++ .+.+..+...++.+|+ +|+.+... .... +.+. ++..+..
T Consensus 102 kGK~Iav~~~~s~~~~ll~~~-l~~~~~-~~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~---g~~~~~~~~~ 171 (280)
T 1zbm_A 102 DGKRIAVPGRYTTANLLLKLA-VEDFEP-VEMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADY---GLKCVLDLWD 171 (280)
T ss_dssp TTCEEEESCTTSHHHHHHHHH-CSSCEE-EECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGG---TCEEEEEHHH
T ss_pred CCCEEEecCCCcHHHHHHHHH-hccCce-EecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhc---CCeEeccHHH
Confidence 79999996 445444334432 222233 3445678889998888 99987543 3332 2221 2222211
Q ss_pred ----cc-ccccc-eEEEEeCC-CC-ChHHHHHHHHhhhhc
Q 047109 712 ----NY-TTTSG-FGFVFQKG-SP-LVHDISRAIAKLREE 743 (808)
Q Consensus 712 ----~~-~~~~~-~~~~~~k~-sp-~~~~~~~~i~~l~e~ 743 (808)
.. . +.+ .+++++++ .| +.+.|.+++.+..+.
T Consensus 172 ~~~~~~g~-~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 172 WWSEQVKL-PLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHTTCSS-CEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCC-CCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 01 1 222 35788888 66 778877777766554
No 166
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=93.16 E-value=0.64 Score=47.53 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred Cceeeec-CCcHHHh---h-hccCCCc-ccccccCCHHHHHHHHhcC----CCCCceEEEEechhhHHHHHhcCCCceEE
Q 047109 639 DNIGSQL-GSFVPGA---L-SNLNFKD-SRLKKYNSAEEFANALSKG----SKNGGISAIIDEIPYIKAFLAKYSTDYTM 708 (808)
Q Consensus 639 ~~i~~~~-~s~~~~~---l-~~~~~~~-~~~~~~~~~~~~~~~l~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 708 (808)
++|++.. ++..... + ++.+... .+++.+++..+...+|.+| + +|+++.+......... .. .+..
T Consensus 119 K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~~~~-~g-~~~~ 192 (321)
T 2x7q_A 119 KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKKYYD-NH-EIKQ 192 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHHHHH-TT-SEEE
T ss_pred ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchhhcc-CC-ceEE
Confidence 6888875 6554322 2 3334332 3555667788899999888 7 9998766544433332 22 3554
Q ss_pred eccccccccc-eEEEEeCC----CC-----ChHHHHHHHHhhhhc
Q 047109 709 IAPNYTTTSG-FGFVFQKG----SP-----LVHDISRAIAKLREE 743 (808)
Q Consensus 709 ~~~~~~~~~~-~~~~~~k~----sp-----~~~~~~~~i~~l~e~ 743 (808)
+..... ..+ .++++++. .| +.+.+.+++.++.++
T Consensus 193 ~~d~~~-~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 193 IDQIYT-PWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp EEEEEC-SSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCC-CCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 444333 322 46777764 34 555666666666654
No 167
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=93.15 E-value=2.3 Score=39.91 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=48.3
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...++..|.+|++|+++.... .....+. ..++....++++++
T Consensus 22 ~l~~~l~~f~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Di~i~~~~---~~~~~~~-~~~l~~~~~~~v~~ 87 (222)
T 4ab5_A 22 WLMPAMGEFRPMWP-QVELDIVSG---------FQADPVGLLLQHRADLAIVSEA---EKQNGIS-FQPLFAYEMVGICA 87 (222)
T ss_dssp HHHHHHHHHHHHST-TEEEEEECC---------CCSCTHHHHHTTSCSEEEESCC---CCCTTEE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHCC-CcEEEEecC---------CHHHHHHHHHcCCcCEEEecCC---CCcCCeE-EEEeecCcEEEEec
Confidence 35578888888775 356666543 4467899999999999987432 2223343 36788888999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 88 ~~~p 91 (222)
T 4ab5_A 88 PDHP 91 (222)
T ss_dssp TTSG
T ss_pred CCCh
Confidence 7653
No 168
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=93.06 E-value=2 Score=40.78 Aligned_cols=70 Identities=7% Similarity=-0.054 Sum_probs=50.0
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.+..- ++++++... +...+...|.+|++|+++...... ...+. +.++....++++++
T Consensus 25 ~l~~~l~~~~~~~P-~v~i~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~ 90 (232)
T 3ho7_A 25 LLPRVFPIWKKELA-GLEIHVSEM---------QTSRCLASLLSGEIDMAIIASKAE---TEGLE-DDLLYYEEFLGYVS 90 (232)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESSCCC---CTTEE-EEEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHcCCCCEEEEcCCCC---CCCeE-EEEecccCEEEEEc
Confidence 45678888888775 456666654 568999999999999998754322 23333 36788888999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 91 ~~hp 94 (232)
T 3ho7_A 91 RCEP 94 (232)
T ss_dssp TTSG
T ss_pred CCCc
Confidence 7643
No 169
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=92.87 E-value=0.21 Score=43.61 Aligned_cols=57 Identities=9% Similarity=0.240 Sum_probs=49.5
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehh
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQ 632 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~ 632 (808)
.++.+++|+++.++.--| ...|.+..+|++.++|+++++.+.+...+.+++.+...+
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998755 447999999999999999999999999999999886433
No 170
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=92.45 E-value=1.1 Score=43.06 Aligned_cols=77 Identities=3% Similarity=-0.019 Sum_probs=51.4
Q ss_pred HHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCC-------CChHHHHHHHHHhcCC--CCe
Q 047109 126 IADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSS-------NTDDQVIEKLSMLKSS--ETK 196 (808)
Q Consensus 126 ~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-------~~~~~~~~~l~~l~~~--~~~ 196 (808)
+++.++..|-++|+++. .|.. ...+.+.+.+++.|+.+........ . .+.+.+...++++.+. ++|
T Consensus 99 ~~~a~~~~g~~rvgvlt---~~~~-~~~~~~~~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~gad 173 (223)
T 2dgd_A 99 VYELLKKLNVRKLWIGT---PYIK-ERTLEEVEWWRNKGFEIVGYDGLGK-IRGIDISNTPIFTIYRLVKRHLNEVLKAD 173 (223)
T ss_dssp HHHHHHHTTCCEEEEEE---SSCH-HHHHHHHHHHHTTTCEEEEEEECCC-CSHHHHHTCCHHHHHHHHHTTHHHHTTSS
T ss_pred HHHHHHHcCCCeEEEEe---CCch-HHHHHHHHHHHhCCcEEecccCCCC-CCcchhhccCHHHHHHHHHHHhcccCCCC
Confidence 33345556779999996 3444 4556788889999998766544332 1 1334567777777666 889
Q ss_pred EEEEEcCHHHH
Q 047109 197 VFVVHMSHALA 207 (808)
Q Consensus 197 viil~~~~~~~ 207 (808)
+||+.|..-..
T Consensus 174 aIvLgCT~l~~ 184 (223)
T 2dgd_A 174 AVYIACTALST 184 (223)
T ss_dssp EEEECCTTSCC
T ss_pred EEEEeCCcccH
Confidence 99998766543
No 171
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=91.94 E-value=0.51 Score=48.43 Aligned_cols=78 Identities=4% Similarity=0.011 Sum_probs=48.8
Q ss_pred eEEEEeHHHHHHHHHH----CCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeec---------c---c
Q 047109 443 IVKGFCVDVFKAAIDS----LTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITA---------N---R 506 (808)
Q Consensus 443 ~~~G~~~dl~~~ia~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~---------~---r 506 (808)
.+..+...|.+.+.+. .|. +++..+. +...+.+..+.+|++|+++....... + .
T Consensus 44 ~~~~~~~~la~~l~~~~~~~~g~--~v~v~~~--------~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~ 113 (327)
T 4ddd_A 44 VYYPIGGSICRFIASDYGKDNKI--ICSISST--------TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLP 113 (327)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTSE--EEEEECC--------CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCC
T ss_pred HHHHHHHHHHHHHHhccCCCCCe--EEEEEec--------CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCC
Confidence 3444555677777776 665 4444432 14578899999999999986543221 0 1
Q ss_pred cceeeccccceeccEEEEEecCCC
Q 047109 507 SLYVDFTLPYTDMGIGMIVPTDRN 530 (808)
Q Consensus 507 ~~~~dfs~p~~~~~~~~lv~~~~~ 530 (808)
.+.+.+..++......+++++..+
T Consensus 114 ~~d~~~v~~~~~~~~~lvv~~ds~ 137 (327)
T 4ddd_A 114 MDNLRMLASLHKEYLTIVVKKSSN 137 (327)
T ss_dssp CTTEEEEEEEEEEEEEEEEETTSS
T ss_pred CcchhehhccCCccEEEEEECCCC
Confidence 233445556777788888876543
No 172
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=91.81 E-value=0.67 Score=49.41 Aligned_cols=101 Identities=7% Similarity=0.040 Sum_probs=59.9
Q ss_pred ccCCceeee-cCCcHHHhh----hccCCC---cccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceE
Q 047109 636 ASRDNIGSQ-LGSFVPGAL----SNLNFK---DSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYT 707 (808)
Q Consensus 636 ~~~~~i~~~-~~s~~~~~l----~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 707 (808)
+++++|++. .+++...++ ++.+.. +.+++.+ ...++...|.+|+ +|+++...........+......
T Consensus 153 LkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~~~~~ 227 (417)
T 2g29_A 153 VTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGVGYQA 227 (417)
T ss_dssp SSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTSCEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCCCEEE
Confidence 379999997 576654433 344443 2344445 4567889998888 99999877766555544421222
Q ss_pred E-eccccccccc-eEEEEeCC----CC-----ChHHHHHHHHhhhh
Q 047109 708 M-IAPNYTTTSG-FGFVFQKG----SP-----LVHDISRAIAKLRE 742 (808)
Q Consensus 708 ~-~~~~~~~~~~-~~~~~~k~----sp-----~~~~~~~~i~~l~e 742 (808)
. ..+... ..+ .++++++. .| +.+.+.++..++.+
T Consensus 228 ~~~~~~~~-~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 228 LTTGQLWK-DHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEGGGTBT-TCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EechhhcC-CCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2 233322 333 56777754 44 44556666677765
No 173
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=91.77 E-value=0.38 Score=37.63 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheee
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSML 628 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~l 628 (808)
++.+++|++..++.--+ ...|++..+|++...+.++++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988765 44789999999999999999999999999987653
No 174
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=91.62 E-value=5.4 Score=38.04 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=49.6
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.++.- ++++++... +...++..|.+|++|+++... ......+.+ .++....++++++
T Consensus 33 ~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~---~~~~~~~~~-~~l~~~~~~~v~~ 98 (241)
T 3oxn_A 33 ILPFALPRIYQEAP-NVSFNFLPL---------QHDRLSDQLTYEGADLAICRP---TGPVEPLRS-EILGRVGVLCLLS 98 (241)
T ss_dssp THHHHHHHHHHHCT-TCEEEEEEC---------CGGGHHHHHHTSCCSEEEECC---SSCCTTEEE-EEEECCCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEEC---------CcccHHHHHHcCCCCEEEecC---CCCCcccee-EEeecccEEEEEe
Confidence 45678888888765 356666554 557899999999999998743 222333433 6788889999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 99 ~~hp 102 (241)
T 3oxn_A 99 KQHP 102 (241)
T ss_dssp TTSG
T ss_pred CCCC
Confidence 7654
No 175
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.55 E-value=8.6 Score=35.66 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=97.8
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
.+|.++.|.++- ..-++-+.++.|. ++... + ++-.+++..++++ . +++.+||.-. +++.
T Consensus 5 ~~I~~iapy~~l-----~~~~~~i~~e~~~-------~i~i~--~--~~l~~~v~~a~~~-~-~~~dVIISRG---gta~ 63 (196)
T 2q5c_A 5 LKIALISQNENL-----LNLFPKLALEKNF-------IPITK--T--ASLTRASKIAFGL-Q-DEVDAIISRG---ATSD 63 (196)
T ss_dssp CEEEEEESCHHH-----HHHHHHHHHHHTC-------EEEEE--E--CCHHHHHHHHHHH-T-TTCSEEEEEH---HHHH
T ss_pred CcEEEEEccHHH-----HHHHHHHHhhhCC-------ceEEE--E--CCHHHHHHHHHHh-c-CCCeEEEECC---hHHH
Confidence 578888887552 2233333334332 34433 2 4577899999998 5 4999999755 3333
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhh
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLH 161 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~ 161 (808)
. +-+..++|+|... .+.. +..+++.+.-+ ++ ++++++...+.. ...+.+.+.+
T Consensus 64 ~---lr~~~~iPVV~I~---------------~s~~---Dil~al~~a~~-~~-~kIavvg~~~~~---~~~~~~~~ll- 116 (196)
T 2q5c_A 64 Y---IKKSVSIPSISIK---------------VTRF---DTMRAVYNAKR-FG-NELALIAYKHSI---VDKHEIEAML- 116 (196)
T ss_dssp H---HHTTCSSCEEEEC---------------CCHH---HHHHHHHHHGG-GC-SEEEEEEESSCS---SCHHHHHHHH-
T ss_pred H---HHHhCCCCEEEEc---------------CCHh---HHHHHHHHHHh-hC-CcEEEEeCcchh---hHHHHHHHHh-
Confidence 3 3345689999843 2223 44566665544 44 489999866542 3445566555
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 047109 162 DNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 162 ~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~a~~~gl 219 (808)
|.++.... +. +.++....++++++.+.++||-.. ...+.|.++|+
T Consensus 117 --~~~i~~~~-~~----~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl 161 (196)
T 2q5c_A 117 --GVKIKEFL-FS----SEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGL 161 (196)
T ss_dssp --TCEEEEEE-EC----SGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTC
T ss_pred --CCceEEEE-eC----CHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCC
Confidence 55555432 22 456888999999999999877643 33567788987
No 176
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=90.42 E-value=0.52 Score=38.24 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=51.2
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhh
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQI 633 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~ 633 (808)
.++.+++|++..++.--+ ...|.+..+|++..+|.++++.+.+...+++++.++.+++
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 368899999999988765 3478999999999999999999999999999998887776
No 177
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=88.87 E-value=1 Score=39.94 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhh
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQI 633 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~ 633 (808)
++.+++|++..++..-| ...|.+..+|++..+|.++++.+.+...+++.+.+..+.+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 110 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998766 3478899999999999999999999999999887766554
No 178
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=88.85 E-value=0.77 Score=38.50 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehh
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQ 632 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~ 632 (808)
++.+++|++..++.--| ...|.+..+|++..+|.++++.+.+...+++.+.++..+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988765 447899999999999999999999999999988776543
No 179
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=88.71 E-value=0.047 Score=49.78 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=50.9
Q ss_pred CCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehh
Q 047109 574 PAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQ 632 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~ 632 (808)
...++.+++|+++.++.--| ...|.+..+|++.++|+++++++.+...+.+++.++...
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999988755 447899999999999999999999999999999987543
No 180
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=88.38 E-value=0.71 Score=46.91 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=49.5
Q ss_pred CCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeeh
Q 047109 574 PAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQ 631 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~ 631 (808)
...++..++|+++.++.--| ...|.+..+|++..++.++++++.+.-.+.+.+.++.+
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999888655 44789999999999999999999999999998887644
No 181
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=87.49 E-value=11 Score=34.84 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=48.0
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.+..- ++++++... ....+...|.+|++|+++.... .....+. ..++....++++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEEN---------YTHTLTESLKRGDVDAIIVAEP---FQEPGIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEEE---------CHHHHHHHHHHTSSSEEEEESS---CCCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcHHHHHHHHcCCCCEEEEcCC---CCCCCee-EEEeeeceEEEEEe
Confidence 35577888887764 345555544 5578999999999999986432 2223333 36788888999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 84 ~~~p 87 (219)
T 3jv9_A 84 KGHS 87 (219)
T ss_dssp TTCG
T ss_pred CCCC
Confidence 7643
No 182
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=87.48 E-value=1.8 Score=48.15 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=44.5
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhh-hheeee
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTAT-LTSMLT 629 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~-L~s~lt 629 (808)
.++.+++|+++.++..-| ...|.+..+|++..+|.++++.+.+...+. +++++.
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999988765 346889999999999999999998888777 555553
No 183
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=87.21 E-value=3.9 Score=42.23 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=68.1
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
+||.+.....+.-.....|++.++++.|.+ .++...+..+-.|+..+.+.+..|+++ ++.+|+... +.. .
T Consensus 151 kIGfVgg~~~p~v~~~~~GF~~G~k~~np~-----i~v~~~~~g~~~d~~kg~~~a~~l~~~-G~DvIf~~~-d~~---G 220 (356)
T 3s99_A 151 IAGYIGSVPVPEVVQGINSFMLGAQSVNPD-----FRVKVIWVNSWFDPGKEADAAKALIDQ-GVDIITQHT-DST---A 220 (356)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHTTCTT-----CEEEEEECSSSCCHHHHHHHHHHHHHT-TCSEEEESS-SSS---H
T ss_pred EEEEECCCccHHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCChHHHHHHHHHHHhC-CCcEEEECC-Cch---H
Confidence 688888776655445678999999887742 567777766668999999999999987 899999877 553 3
Q ss_pred HHHhcCCCCccEEeccCCCCc
Q 047109 83 LAEIGSKAKIPVISLYATLPS 103 (808)
Q Consensus 83 ~~~~~~~~~iP~is~~~~~~~ 103 (808)
+...+...++..|.+......
T Consensus 221 v~~aa~e~Gv~vIG~D~dq~~ 241 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASDMIK 241 (356)
T ss_dssp HHHHHHHTTCEEEEEESCCGG
T ss_pred HHHHHHHcCCEEEEEcCchhh
Confidence 445555678889988765443
No 184
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=85.90 E-value=1.3 Score=44.50 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeee
Q 047109 573 SPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTV 630 (808)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~ 630 (808)
....++.+++|+++.++.--| ...|.+..+|++..++.++++++.+...+.+.+.++.
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999988655 4478999999999999999999999999988887754
No 185
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=85.85 E-value=1.5 Score=42.03 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeee
Q 047109 554 LTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLT 629 (808)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt 629 (808)
+.+++++.+++.. .+....++.+++|+++.++..-| ...|.+..+|++..+++++++.+.+...+.+++.++
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555421 12234578999999999988655 447899999999999999999999999999987664
No 186
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=85.68 E-value=2.8 Score=40.13 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=63.8
Q ss_pred HHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcE
Q 047109 58 VLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKH 137 (808)
Q Consensus 58 a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~ 137 (808)
+..+ .+.++.+|+-+. .+. ..+..+-+..++|+++.. ++.++.....+ ++
T Consensus 68 ~~~l-~~~g~d~iviaC-nta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~r 117 (228)
T 2eq5_A 68 AKEF-EREGVDAIIISC-AAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RR 117 (228)
T ss_dssp HHHH-HHTTCSEEEECS-TTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SS
T ss_pred HHHH-HHCCCCEEEEeC-Cch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-Ce
Confidence 3344 345899998765 444 444455556688988732 11111122356 89
Q ss_pred EEEEEecCCccccCcHHHHHHhh-hcCCcEEEEEEe--c-CCCCC--ChHHHHHHHHHhcCCCCeEEEEEcCHHH
Q 047109 138 VILIYEDNTWGSDNIIPYLFDSL-HDNDIDIARRIT--I-SMSSN--TDDQVIEKLSMLKSSETKVFVVHMSHAL 206 (808)
Q Consensus 138 v~ii~~d~~~g~~~~~~~~~~~~-~~~g~~i~~~~~--~-~~~~~--~~~~~~~~l~~l~~~~~~viil~~~~~~ 206 (808)
++++..... ..+.+.+.+ ++.|..+..... + .. .. ..+.+...+..+.+.++|+||+.|..-.
T Consensus 118 igVlat~~t-----~~~~~~~~~~~~~g~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 118 VGVLNLTEE-----TPKVIRSILGNNLIAEDHPSGVSNTLDL-LTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EEEECSSSC-----CCHHHHHHHGGGEEEEECCTTCCSGGGG-GSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEEEecCcc-----cHHHHHHHHHHHhCccccCCceeeHHHh-cChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999986543 224567777 777765321100 0 01 00 1234556666776678999999887654
No 187
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=85.45 E-value=16 Score=36.26 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=46.9
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccce-eccEEEEE
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYT-DMGIGMIV 525 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~-~~~~~~lv 525 (808)
+-.+++..+.++.- ++++++... +...++..|.+|++|+++.... .....+.. .++. ....++++
T Consensus 109 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~~-~~l~~~~~~~~v~ 174 (306)
T 3fzv_A 109 YLPGLIAGFRQAYP-GVEIRIRDG---------EQQELVQGLTSGRFDLAFLYEH---DLDSTIET-EPLMPPQRPHALL 174 (306)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEEE---------CHHHHHHHHHHTSCSEEEECSS---SCCTTEEE-EESSCCBCCEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEeC---------CHHHHHHHHHCCCccEEEEecc---ccccccce-eeeeeccccEEEe
Confidence 45678888888774 356666554 5688999999999999986322 22222333 4555 66777888
Q ss_pred ecCCC
Q 047109 526 PTDRN 530 (808)
Q Consensus 526 ~~~~~ 530 (808)
++..+
T Consensus 175 ~~~~p 179 (306)
T 3fzv_A 175 PEGHR 179 (306)
T ss_dssp ETTCT
T ss_pred cCCCc
Confidence 77644
No 188
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=85.12 E-value=1.9 Score=41.36 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC
Q 047109 56 TTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW 135 (808)
Q Consensus 56 ~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w 135 (808)
+.+..+ .+.++.+|+-+. .+.. ..+..+-+..++|++... ++.++.+...+-
T Consensus 65 ~~~~~l-~~~g~d~iviaC-nTa~-~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~~ 116 (228)
T 1jfl_A 65 WTAKRL-EECGADFIIMPC-NTAH-AFVEDIRKAIKIPIISMI-------------------------EETAKKVKELGF 116 (228)
T ss_dssp HHHHHH-HHHTCSEEECSC-TGGG-GGHHHHHHHCSSCBCCHH-------------------------HHHHHHHHHTTC
T ss_pred HHHHHH-HHcCCCEEEEcC-ccHH-HHHHHHHHhCCCCEechH-------------------------HHHHHHHHHcCC
Confidence 444444 445899998875 4443 445555566688877631 122222222266
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcCCcEEE
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIA 168 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~ 168 (808)
++|+++...... ....+++.+++.|+.+.
T Consensus 117 ~rigvlaT~~T~----~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 117 KKAGLLATTGTI----VSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp SEEEEECCHHHH----HHTHHHHHHHHTTCEEE
T ss_pred CeEEEEecHHHh----hhhHHHHHHHHCCCeEE
Confidence 899998755432 11345566677777653
No 189
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=84.41 E-value=9.6 Score=36.16 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHH
Q 047109 49 GDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIAD 128 (808)
Q Consensus 49 ~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ 128 (808)
++-.+++..+.+++..+++.+||.-. +++.. +-+..++|+|... .+.. +..+++.+
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIISRG---gta~~---Lr~~~~iPVV~I~---------------vs~~---Dil~aL~~ 101 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAG---SNGAY---LKSRLSVPVILIK---------------PSGY---DVLQFLAK 101 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEH---HHHHH---HHTTCSSCEEEEC---------------CCHH---HHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEeCC---hHHHH---HHhhCCCCEEEec---------------CCHH---HHHHHHHH
Confidence 45677899898987765799999755 33333 3345689999843 2223 44555555
Q ss_pred HHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHH
Q 047109 129 LIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALAS 208 (808)
Q Consensus 129 ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 208 (808)
. +.++ ++++++...+.. ...+.+.+.+ |.++... .+. +.++....++++++.+.++||-.+
T Consensus 102 a-~~~~-~kIavVg~~~~~---~~~~~i~~ll---~~~i~~~-~~~----~~ee~~~~i~~l~~~G~~vVVG~~------ 162 (225)
T 2pju_A 102 A-GKLT-SSIGVVTYQETI---PALVAFQKTF---NLRLDQR-SYI----TEEDARGQINELKANGTEAVVGAG------ 162 (225)
T ss_dssp T-TCTT-SCEEEEEESSCC---HHHHHHHHHH---TCCEEEE-EES----SHHHHHHHHHHHHHTTCCEEEESH------
T ss_pred H-HhhC-CcEEEEeCchhh---hHHHHHHHHh---CCceEEE-EeC----CHHHHHHHHHHHHHCCCCEEECCH------
Confidence 4 3344 589998765532 2334455544 4455432 221 567999999999999999876543
Q ss_pred HHHHHHHHcCC
Q 047109 209 HLFLNAKKLGM 219 (808)
Q Consensus 209 ~~l~~a~~~gl 219 (808)
...+.|.++|+
T Consensus 163 ~~~~~A~~~Gl 173 (225)
T 2pju_A 163 LITDLAEEAGM 173 (225)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 33566788987
No 190
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=84.19 E-value=11 Score=37.41 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=48.0
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.+..- .+++++... ..+.++..|.+|++|+++...... .....+. +.++....++++++
T Consensus 106 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~-~~~~~l~-~~~L~~~~~~~v~~ 173 (305)
T 3fxq_A 106 ALPLALASFAREFP-DVTVNVRDG---------MYPAVSPQLRDGTLDFALTAAHKH-DIDTDLE-AQPLYVSDVVIVGQ 173 (305)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEEC---------CTTTTHHHHHHTSSSEEEEECCGG-GSCTTEE-EEEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEEC---------CHHHHHHHHHcCCCCEEEecCCCC-CCccCee-EEEeecCcEEEEEc
Confidence 35678888888775 356666553 346789999999999998643211 1122232 36788888999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 174 ~~hp 177 (305)
T 3fxq_A 174 RQHP 177 (305)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 7654
No 191
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=83.47 E-value=12 Score=38.71 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceee-cc-ccce
Q 047109 450 DVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVD-FT-LPYT 517 (808)
Q Consensus 450 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~d-fs-~p~~ 517 (808)
.+.+.+.++.|-+++++..+.+.. |.+..+++.+..|.+|++..+......+...+. |+ .||.
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g~L-----g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAGAV-----VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSS-----SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHhcCCeEEEEEeCCCcc-----cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 577788888887788887765322 367899999999999999876655555544433 22 5654
No 192
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=83.07 E-value=19 Score=35.74 Aligned_cols=73 Identities=7% Similarity=0.015 Sum_probs=46.5
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...++..|.+|++|+++......+.....+. ..++....++++++
T Consensus 115 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l~-~~~l~~~~~~~v~~ 183 (310)
T 2esn_A 115 LLPPLMNRLQHSAP-GVRLRLVNA---------ERKLSVEALASGRIDFALGYDEEHERLPEGIQ-AHDWFADRYVVVAR 183 (310)
T ss_dssp HHHHHHHHHHHHST-TCEEEEECC---------SSSCCHHHHHHTSSSEEEECCSTTCCCCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEeC---------CcccHHHHHHcCCCCEEEecCcccccCCcCcc-eeeeeccceEEEEe
Confidence 35677888888774 356666543 33567888999999999864100111122233 35778888899988
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 184 ~~~p 187 (310)
T 2esn_A 184 RDHP 187 (310)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 7643
No 193
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=82.79 E-value=5.1 Score=40.35 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=35.3
Q ss_pred eehhhhhccCCceee-ecCCcHHH----hhhccCCCcccc--cccCCHHHHHHHHhcCCCCCceEEEEec
Q 047109 629 TVQQIKLASRDNIGS-QLGSFVPG----ALSNLNFKDSRL--KKYNSAEEFANALSKGSKNGGISAIIDE 691 (808)
Q Consensus 629 t~~~~~~~~~~~i~~-~~~s~~~~----~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~a~~~~ 691 (808)
+++++ .++++++ ..++..+. ++++.+.....+ ..+.+..+....+..|+ +|+.+..
T Consensus 125 sl~dL---~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~ 187 (314)
T 1us5_A 125 TVADL---KGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYT 187 (314)
T ss_dssp SGGGG---TTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEE
T ss_pred cHHHh---CCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEc
Confidence 45555 6778877 45665433 334444432233 35667888899998888 8888864
No 194
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=82.36 E-value=18 Score=33.74 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=49.2
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.++.- .+++++... +...+++.|.+|++|+++... +.....+.+ .|+....++++++
T Consensus 22 ~lp~~l~~f~~~~P-~v~l~l~~~---------~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~ 87 (218)
T 2y7p_A 22 FMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMFR 87 (218)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECC---------CTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEeC---------CcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEEc
Confidence 45678888888774 356666553 457889999999999998632 222233444 5888899999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 88 ~~hp 91 (218)
T 2y7p_A 88 KDHP 91 (218)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 7754
No 195
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=82.24 E-value=16 Score=34.02 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=49.1
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...++..|.+|++|+++... +.....+.+ .|+....++++++
T Consensus 19 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~ 84 (219)
T 1i6a_A 19 LLPHIIPMLHQTFP-KLEMYLHEA---------QTHQLLAQLDSGKLDAVILAL---VKESEAFIE-VPLFDEPMLLAIY 84 (219)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEEEC---CGGGTTSEE-EEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHCC-CeEEEEEEC---------ChHHHHHHHHcCCeeEEEecC---CCCCCCcce-eeeecccEEEEEc
Confidence 45678888888775 466666654 568999999999999998532 222223333 5788888899998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 85 ~~hp 88 (219)
T 1i6a_A 85 EDHP 88 (219)
T ss_dssp TTSG
T ss_pred CCCc
Confidence 7643
No 196
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=81.45 E-value=16 Score=36.80 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=75.2
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
+||.+.....+.......|++.|+++.|- +.++...+..+-.++..+.+++.++++. ++.+|+... +.. +..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~-d~~-a~G 202 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP-----DIQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIFQVA-GGT-GNG 202 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT-----TCEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEEEEC-GGG-HHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC-----CCEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEEECC-CCC-chH
Confidence 68888766554445567899999998863 2344444444445788899999999986 799999875 433 333
Q ss_pred HHHhcCC-----CCccEEeccCCCCccc------cc-ceeeeccCCchhhHHHHHHHHHHHhcCCc
Q 047109 83 LAEIGSK-----AKIPVISLYATLPSSL------TS-YSIQIDQDDEASQSQAKGIADLIRVFKWK 136 (808)
Q Consensus 83 ~~~~~~~-----~~iP~is~~~~~~~~l------s~-~~~r~~p~~~~~~~~~~a~~~ll~~~~w~ 136 (808)
+...+.. .++.+|++...... . .+ .+..+..+-. ..+...++.+..-.|+
T Consensus 203 v~~a~~e~g~~P~dv~viG~D~~~~~-~~~~~~~~~~~LTsv~~~~~---~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 203 VIKEARDRRLNGQDVWVIGVDRDQYM-DGVYDGSKSVVLTSMVKRAD---VAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESCCGG-GGBCSSSCBSEEEEEEECHH---HHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhhhccCCcEEEEEecchhh-hccccCCCCeEEEEEEEEHH---HHHHHHHHHHHcCCCC
Confidence 3333333 67888998764433 3 22 2223333333 5556666666554554
No 197
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=80.25 E-value=39 Score=31.63 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=48.0
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.++.- .+++++... +...++..|.+|++|+++.... .....+.+ .++....++++++
T Consensus 44 ~l~~~l~~f~~~~P-~v~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~~-~~l~~~~~~~v~~ 109 (238)
T 2hxr_A 44 FIGPLMADFYARYP-SITLQLQEM---------SQEKIEDMLCRDELDVGIAFAP---VHSPELEA-IPLLTESLALVVA 109 (238)
T ss_dssp THHHHHHHHHHHCT-TSCEEEEEC---------CHHHHHHHHHTTSCSEEEEESS---CCCTTEEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CcEEEEEEC---------CHHHHHHHHHcCCCcEEEEcCC---CCccccee-eeeccCcEEEEEc
Confidence 35678888888775 356666553 5578899999999999986321 11223333 5788888899988
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 110 ~~hp 113 (238)
T 2hxr_A 110 QHHP 113 (238)
T ss_dssp TTSG
T ss_pred CCCc
Confidence 7643
No 198
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=80.12 E-value=14 Score=34.49 Aligned_cols=71 Identities=6% Similarity=-0.061 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc-ccEEEeceeeecc---ccceee--ccccceeccEE
Q 047109 449 VDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK-FDAVVGETTITAN---RSLYVD--FTLPYTDMGIG 522 (808)
Q Consensus 449 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~---r~~~~d--fs~p~~~~~~~ 522 (808)
-++++.+.++-|.++++.. . +-..++..|.+|+ +|+++..-....+ +...+. -..|+....++
T Consensus 15 ~~~~~~F~~~p~i~v~~~~--~---------~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 15 EQLAGQFAKQTGHAVVISS--G---------SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHCCCEEEEE--E---------CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHhccCCeEEEEE--C---------CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 3577777777776655533 2 3478889999998 9998763211111 111111 24678888899
Q ss_pred EEEecCCC
Q 047109 523 MIVPTDRN 530 (808)
Q Consensus 523 ~lv~~~~~ 530 (808)
+++++..+
T Consensus 84 lv~~~~~~ 91 (231)
T 1atg_A 84 LWSAKPGL 91 (231)
T ss_dssp EEESSTTT
T ss_pred EEEcCCCC
Confidence 99987643
No 199
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=78.74 E-value=1.9 Score=44.74 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHhhheeeecccCCCCCCCCCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeee
Q 047109 554 LTGFVVWIIERPINDEFQGSPAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLT 629 (808)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt 629 (808)
+.+++.+.+++..+++ ...++.+++|+++.++..-| ...|.+..+|++..+++++++++.+...+.+++.+.
T Consensus 142 ~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 142 AVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666543211 12468899999999998655 447899999999999999999999999999988774
No 200
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=78.69 E-value=2.8 Score=43.85 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
...+.++++.+|.+++.++++...... ...+.+.+.+++.|+.+.....+.. .++.+.....++.+++.++|+||-.+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~-g~~~~v~~~L~~~gi~~~~~~~v~~-~p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKS-GVVKQVADLLKAQGINSAVYDGVMP-NPTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHT-THHHHHHHHHHTTTCEEEEEEEECS-SCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhC-chHHHHHHHHHHcCCeEEEECCccC-CCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 455677788899999999997654433 4688999999999988754444444 45677888888888888999998887
Q ss_pred CHH--HHHHHHHHHH
Q 047109 203 SHA--LASHLFLNAK 215 (808)
Q Consensus 203 ~~~--~~~~~l~~a~ 215 (808)
.+. |+..++....
T Consensus 97 GGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 97 GGSPHDCAKAIALVA 111 (383)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 664 4444444333
No 201
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=78.43 E-value=35 Score=31.08 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=47.7
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...+..+|.+|++|+++... ......+. +.++....++++++
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~l~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~ 84 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFRED---------TQNRLRTQLEGGELDVAIVYD---LDLSPEWQ-TVPLMTREPMVVLG 84 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHTTSCSEEEEES---SSCCTTEE-EEEEEEECCEEEEE
T ss_pred hHHHHHHHHHHHCC-CceEEEEEC---------cHHHHHHHHHcCCccEEEEec---CCCCCCce-EEEeecCceEEEEe
Confidence 35678888888775 456666654 567899999999999998532 11122233 35777888888888
Q ss_pred cCC
Q 047109 527 TDR 529 (808)
Q Consensus 527 ~~~ 529 (808)
+..
T Consensus 85 ~~h 87 (209)
T 2ql3_A 85 AEH 87 (209)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 202
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=78.25 E-value=1.2 Score=45.75 Aligned_cols=57 Identities=7% Similarity=0.130 Sum_probs=46.1
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeehhh
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQQI 633 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~ 633 (808)
++.+++|+++.++..-| ...|.+..+|++.++|.++++++.+...+.+++.++...+
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999888755 3468899999999999999999999999999998876544
No 203
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=77.66 E-value=45 Score=30.97 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=48.8
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...++..|.+|++|+++.... ......+.+ .++....++++++
T Consensus 28 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~--~~~~~~l~~-~~l~~~~~~~v~~ 94 (228)
T 2fyi_A 28 SLPEVIKAFRELFP-EVRLELIQG---------TPQEIATLLQNGEADIGIASER--LSNDPQLVA-FPWFRWHHSLLVP 94 (228)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESSS--STTCTTEEE-EEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHcCCccEEEEecc--cCCCCCceE-EEeeecceEEEec
Confidence 35678888888875 466766654 5689999999999999986321 111122333 5778888889988
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 95 ~~hp 98 (228)
T 2fyi_A 95 HDHP 98 (228)
T ss_dssp TTCG
T ss_pred CCCC
Confidence 7643
No 204
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=77.24 E-value=6.1 Score=42.01 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=56.2
Q ss_pred CC--ceeee-cCCcHHHh----hhccCCCc---ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCc-e
Q 047109 638 RD--NIGSQ-LGSFVPGA----LSNLNFKD---SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTD-Y 706 (808)
Q Consensus 638 ~~--~i~~~-~~s~~~~~----l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-l 706 (808)
++ +|++. .+++...+ |++.+... .+++.+ ...++...|.+|+ +|+++...........+.... +
T Consensus 161 GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~~~g~g~~~ 235 (429)
T 2i49_A 161 GRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIVTENIGYMA 235 (429)
T ss_dssp SSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHHHTTSCEEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHHHCCCCEEE
Confidence 77 89987 57765433 34445432 233434 5678889998888 999998777665555443211 2
Q ss_pred EEecccccccc-ceEEEEeCC----CC-----ChHHHHHHHHhhhh
Q 047109 707 TMIAPNYTTTS-GFGFVFQKG----SP-----LVHDISRAIAKLRE 742 (808)
Q Consensus 707 ~~~~~~~~~~~-~~~~~~~k~----sp-----~~~~~~~~i~~l~e 742 (808)
...++... .. ...+++++. .| +.+.+.++..++.+
T Consensus 236 ~~~~~~~~-~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 236 GLTAQIWP-YHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp EEHHHHST-TCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred EechHhcC-CCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 12222222 22 245666654 34 44555555566665
No 205
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=76.66 E-value=1.4 Score=43.33 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEec
Q 047109 54 ALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISL 97 (808)
Q Consensus 54 a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~ 97 (808)
.+..+.+.+.+.|+.+|+-+. .+..+ .+..+-+..++|+|..
T Consensus 87 ~l~~~~~~L~~~Gad~IVIaC-NTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 87 YLERYLHMLEDAGAECIVIPC-NTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHTTCSEEECSC-SGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHHcCCCEEEEeC-CCHHH-HHHHHHHHCCCCEEcc
Confidence 334444545556999999876 44433 4556666678999873
No 206
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=74.93 E-value=8.8 Score=36.54 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcE
Q 047109 58 VLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKH 137 (808)
Q Consensus 58 a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~ 137 (808)
+..|. +.|+.+|+-+. .+.... +..+-+..++|++... ++.++.+...+-++
T Consensus 66 ~~~L~-~~g~d~iviaC-nTa~~~-~~~l~~~~~iPvi~i~-------------------------~a~~~~~~~~~~~r 117 (226)
T 2zsk_A 66 AKALE-RAGAELIAFAA-NTPHLV-FDDVQREVNVPMVSII-------------------------DAVAEEILKRGVRK 117 (226)
T ss_dssp HHHHH-HHTCSEEEESS-SGGGGG-HHHHHHHCSSCBCCHH-------------------------HHHHHHHHHTTCCE
T ss_pred HHHHH-HcCCCEEEECC-CcHHHH-HHHHHHhCCCCEeccH-------------------------HHHHHHHHHcCCCe
Confidence 33344 45899988876 444322 3455555678877621 23333333346789
Q ss_pred EEEEEecCCccccCcHHHHHHhhhcCCcEEE
Q 047109 138 VILIYEDNTWGSDNIIPYLFDSLHDNDIDIA 168 (808)
Q Consensus 138 v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~ 168 (808)
|+++...... -...+++.+++.|+.+.
T Consensus 118 igvlaT~~T~----~~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 118 VLLLGTKTTM----TADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EEEESSTTTT----SCHHHHHHHHTTTCEEE
T ss_pred EEEEeCHHHH----hhhHHHHHHHHCCCEEE
Confidence 9999754432 22456777777887754
No 207
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=74.82 E-value=28 Score=34.64 Aligned_cols=64 Identities=5% Similarity=-0.092 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceee-cccccee
Q 047109 450 DVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVD-FTLPYTD 518 (808)
Q Consensus 450 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~d-fs~p~~~ 518 (808)
.+.+.+.++.|-++++++.+.+.. |+-..+++.+..|.+|++..+......+...+. |+.||..
T Consensus 22 ~fa~~v~e~s~G~i~i~~~~~g~L-----g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~ 86 (301)
T 2pfy_A 22 QFADEVKAATAGALEIKVQSNSTL-----LKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLA 86 (301)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSS-----SCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTS
T ss_pred HHHHHHHHHcCCeEEEEEccchhh-----CChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCccc
Confidence 577788888998888887775432 245789999999999998765444333332222 3455543
No 208
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=74.57 E-value=22 Score=36.61 Aligned_cols=53 Identities=6% Similarity=-0.145 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc
Q 047109 450 DVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS 507 (808)
Q Consensus 450 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~ 507 (808)
.+.+.+.++.|-+++++..+.+.. |....+++.+..|.+|++..+......+.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~L-----g~~~~~~eav~~G~iD~~~~~~~~~~~~~ 105 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGEL-----VPGLQAADAVTEGTVECCHTVGYYYWGKD 105 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTS-----SCGGGHHHHHHTTSSSEEEECGGGGTTTC
T ss_pred HHHHHHHHhcCCeEEEEEecCCcc-----cCHHHHHHHHHcCccceeecchhhhcccC
Confidence 477788888887788887775322 35688999999999999976544433333
No 209
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=74.30 E-value=5.7 Score=40.07 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeeeeh
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLTVQ 631 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~ 631 (808)
.++.+++|+++.++.--| ...|.+..+|++..++.++++++.+.-.+.+++.++.+
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999988655 45799999999999999999999999999998877543
No 210
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=72.53 E-value=19 Score=35.81 Aligned_cols=119 Identities=13% Similarity=-0.036 Sum_probs=71.0
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
+||.+.....+. ...|++.|+++.|- + +....+..+-.++..+.+++.++++. ++.+|+... +. .+..
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~~-----~-~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~-D~-~a~G 195 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMNE-----S-EAFVRYVGEWTDADKALELFQELQKE-QVDVFYPAG-DG-YHVP 195 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTTC-----C-EEEEEECSSSSCHHHHHHHHHHHHTT-TCCEEECCC-TT-THHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhCC-----C-eEEEEeeccccCHHHHHHHHHHHHHC-CCcEEEECC-CC-CCHH
Confidence 688887654442 57899999988773 2 33333333335788899999999986 799999865 43 3344
Q ss_pred HHHhcCCCCccEEeccCCCCcccc-c-ceeeeccCCchhhHHHHHHHHHHHhcCCcE
Q 047109 83 LAEIGSKAKIPVISLYATLPSSLT-S-YSIQIDQDDEASQSQAKGIADLIRVFKWKH 137 (808)
Q Consensus 83 ~~~~~~~~~iP~is~~~~~~~~ls-~-~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~ 137 (808)
+...+...++.+|++...... +. + .+..+..+-. ..+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~~~~~-~~~~~~LTsv~~~~~---~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVGDQAD-LGGSTILTSTVQHVD---DLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEESCCSS-SSCSSEEEEEEECHH---HHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEecchhh-hCCCeEEEEEEEEhH---HHHHHHHHHHHcCCCCC
Confidence 444555567888888763222 21 1 2222222323 44445555554445653
No 211
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=72.26 E-value=29 Score=34.60 Aligned_cols=63 Identities=11% Similarity=-0.118 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceee-ccccce
Q 047109 450 DVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVD-FTLPYT 517 (808)
Q Consensus 450 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~d-fs~p~~ 517 (808)
.+.+.+.++.|-++++++.+.+.. |.-..+++.+..|.+|++..+......+...+. |+.||.
T Consensus 21 ~fa~~v~~~s~G~i~i~~~~~g~L-----g~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~ 84 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASL-----YKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFL 84 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTTSS-----SCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTS
T ss_pred HHHHHHHHHcCCeEEEEEccCccc-----CChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCC
Confidence 567778888887888887775432 345789999999999999765444333332221 345554
No 212
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=72.18 E-value=81 Score=31.30 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=47.7
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.+..- .+++++... +...++..|.+|++|+++..... .....+. +.++....++++++
T Consensus 107 ~l~~~l~~f~~~~P-~v~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~--~~~~~l~-~~~L~~~~~~~v~~ 173 (324)
T 1al3_A 107 ALPGVIKGFIERYP-RVSLHMHQG---------SPTQIAEAVSKGNADFAIATEAL--HLYDDLV-MLPCYHWNRSIVVT 173 (324)
T ss_dssp TSHHHHHHHHHHCT-EEEEEEEEC---------CHHHHHHHHHTTCCSEEEESSCC--CTTSCEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CCEEEEEEC---------CHHHHHHHHHCCCceEEEEecCC--CCCCCee-EEEecCCceEEEEc
Confidence 35678888888775 456666553 56789999999999999864221 1122233 35777788888887
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 174 ~~~p 177 (324)
T 1al3_A 174 PEHP 177 (324)
T ss_dssp TTST
T ss_pred CCCc
Confidence 6643
No 213
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=71.96 E-value=6.3 Score=38.75 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=65.5
Q ss_pred HHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC
Q 047109 56 TTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW 135 (808)
Q Consensus 56 ~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w 135 (808)
+.+..|. +.++.+|+-+. .+.++..+..+-+..++|+|... .| ++...++.-+-
T Consensus 56 ~~~~~L~-~~g~d~iviaC-NTas~~~l~~lr~~~~iPvigi~--ep----------------------~~~~A~~~~~~ 109 (267)
T 2gzm_A 56 EMTEHLL-DLNIKMLVIAC-NTATAVVLEEMQKQLPIPVVGVI--HP----------------------GSRTALKVTNT 109 (267)
T ss_dssp HHHHHHH-TTTCSEEEECC-HHHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCSS
T ss_pred HHHHHHH-HCCCCEEEEeC-chhhHHHHHHHHHhCCCCEEeec--HH----------------------HHHHHHHccCC
Confidence 3444444 45999999876 55554466677777899999831 01 11111233456
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC----hHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT----DDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
++|+++........ ..+++.+++. |+.+..... +.....+ ...+...++.+.+.++|.||+.|.
T Consensus 110 ~rIgVlaT~~T~~~----~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCT 185 (267)
T 2gzm_A 110 YHVGIIGTIGTVKS----GAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCT 185 (267)
T ss_dssp CEEEEEECHHHHHH----THHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECST
T ss_pred CEEEEEEChHHhcc----HHHHHHHHHhCCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEccc
Confidence 78888875432211 2344445444 655543211 0010001 234556667777678999999875
Q ss_pred HH
Q 047109 204 HA 205 (808)
Q Consensus 204 ~~ 205 (808)
.-
T Consensus 186 h~ 187 (267)
T 2gzm_A 186 HY 187 (267)
T ss_dssp TG
T ss_pred Ch
Confidence 54
No 214
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=71.92 E-value=11 Score=39.44 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCcEEEEEEecCCcccc-CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSD-NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~-~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
.+.++++.++.+++.++++...+... ...+.+.+.+++.|+.+.....+.. .++.+.....++.+++.++|+||-.+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~-~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEP-NPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCS-SCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccC-CCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45677777888999998865543220 2789999999999988754333333 446678888888888899999997765
Q ss_pred HH--HHHHHHHH
Q 047109 204 HA--LASHLFLN 213 (808)
Q Consensus 204 ~~--~~~~~l~~ 213 (808)
+. |+..++..
T Consensus 102 Gsv~D~aK~iA~ 113 (387)
T 3bfj_A 102 GSPHDCGKGIGI 113 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchhhHHHHHHH
Confidence 43 44444443
No 215
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=71.61 E-value=6.7 Score=38.67 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=62.8
Q ss_pred HHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCCcEE
Q 047109 59 LNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKWKHV 138 (808)
Q Consensus 59 ~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v 138 (808)
.+.+.+.++.+|+-+. .+..+..+..+-+..++|++... .| ++...++.-+-++|
T Consensus 67 ~~~L~~~g~d~iviaC-NTas~~~l~~lr~~~~iPvigi~--ep----------------------a~~~A~~~~~~~rI 121 (273)
T 2oho_A 67 VNFLLTQNVKMIVFAC-NTATAVAWEEVKAALDIPVLGVV--LP----------------------GASAAIKSTTKGQV 121 (273)
T ss_dssp HHHHHTTTCSEEEECC-HHHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCSSSEE
T ss_pred HHHHHHCCCCEEEEeC-chHhHHHHHHHHHhCCCCEEecc--HH----------------------HHHHHHHhcCCCeE
Confidence 3334456999999876 55554556677777789998831 11 11112233456889
Q ss_pred EEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC----hHHHHHHHHHhcCCCCeEEEEEcCHH
Q 047109 139 ILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT----DDQVIEKLSMLKSSETKVFVVHMSHA 205 (808)
Q Consensus 139 ~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~l~~~~~~viil~~~~~ 205 (808)
+++......-. ..+++.+++. |+.+..... +.....+ ...+...++.+.+. +|+||+.|..-
T Consensus 122 gVlaT~~T~~~----~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~ 195 (273)
T 2oho_A 122 GVIGTPMTVAS----DIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHY 195 (273)
T ss_dssp EEEECHHHHHH----THHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTG
T ss_pred EEEECchhhcc----hHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCH
Confidence 99876542211 2334444444 666553111 1110001 12344455666556 99999987554
No 216
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=71.45 E-value=16 Score=37.26 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=33.6
Q ss_pred cCCceeeecCCcHHHh----hhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHH
Q 047109 637 SRDNIGSQLGSFVPGA----LSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIK 696 (808)
Q Consensus 637 ~~~~i~~~~~s~~~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 696 (808)
+++++++. ++..+.. +++.+.....+...+...+....+.+|+ +|+.+.-.....
T Consensus 110 kGK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~ 168 (342)
T 4esw_A 110 KGKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQ 168 (342)
T ss_dssp TTCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHH
T ss_pred CCCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchH
Confidence 89999985 4433333 3555554444444444445567888888 998887655433
No 217
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=70.40 E-value=22 Score=35.01 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=70.2
Q ss_pred HHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc
Q 047109 54 ALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF 133 (808)
Q Consensus 54 a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~ 133 (808)
+.+.+..|. +.++.+|+-+. .+.++..+..+-+..++|+|... .|. ++.. ++.-
T Consensus 58 ~~~~~~~L~-~~g~d~IViAC-NTas~~~l~~lr~~~~iPVigii--ep~-------------------~~~A---~~~~ 111 (276)
T 2dwu_A 58 VFEMVEFLK-QFPLKALVVAC-NTAAAATLAALQEALSIPVIGVI--HPG-------------------ARAA---IKVT 111 (276)
T ss_dssp HHHHHHHHT-TSCEEEEEECC-HHHHHHHHHHHHHHCSSCEEESH--HHH-------------------HHHH---HHHC
T ss_pred HHHHHHHHH-HCCCCEEEEeC-CcHHHHHHHHHHHHCCCCEEecc--HHH-------------------HHHH---HHhc
Confidence 344444444 45999999876 55554566677777789998731 111 1111 2234
Q ss_pred CCcEEEEEEecCCccccCcHHHHHHhhhc--CCcEEEEEEecCCC-------CCC----hHHHHHHHHHhcCCCCeEEEE
Q 047109 134 KWKHVILIYEDNTWGSDNIIPYLFDSLHD--NDIDIARRITISMS-------SNT----DDQVIEKLSMLKSSETKVFVV 200 (808)
Q Consensus 134 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~--~g~~i~~~~~~~~~-------~~~----~~~~~~~l~~l~~~~~~viil 200 (808)
+-++|+++......-. . .+++.+++ .+..+.... -+.- ..+ ...+...++.+++.++|.||+
T Consensus 112 ~~~rIgVlaT~~T~~s-~---~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVL 186 (276)
T 2dwu_A 112 KKGKIGVIGTVGTIQS-N---MYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLIL 186 (276)
T ss_dssp SSSEEEEEECHHHHHT-T---HHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCeEEEEeChhhhhh-H---HHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5679999986653322 2 23333333 245553221 1110 001 124556777777788999999
Q ss_pred EcCH-HHHHHHHHH
Q 047109 201 HMSH-ALASHLFLN 213 (808)
Q Consensus 201 ~~~~-~~~~~~l~~ 213 (808)
.|.. ......+++
T Consensus 187 GCTh~p~l~~~i~~ 200 (276)
T 2dwu_A 187 GCTHYPLLESYIKK 200 (276)
T ss_dssp CSTTGGGGHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 8765 334444443
No 218
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=70.20 E-value=7.2 Score=42.45 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=46.6
Q ss_pred CCcchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheee
Q 047109 574 PAHQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSML 628 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~l 628 (808)
...++..++|+++.++..-+ ...|.+..+|++.++++++++++.+.+.|.+.+.+
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f 428 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999888655 44688889999999999999999999999887754
No 219
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=69.95 E-value=13 Score=38.38 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
..+.++++.++ +++.++++...+......+.+.+.+++.|+.+.....+.. .++.+.....++.+++.++|+||-.+.
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~-~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEE-NPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECS-SCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccC-CCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34556677778 9999999765443313678999999999987654333444 456778888899998889999997765
Q ss_pred HH--HHHHHHH
Q 047109 204 HA--LASHLFL 212 (808)
Q Consensus 204 ~~--~~~~~l~ 212 (808)
+. |+..++.
T Consensus 108 Gsv~D~AK~iA 118 (371)
T 1o2d_A 108 GSPMDFAKAVA 118 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 53 3444443
No 220
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=68.73 E-value=8.6 Score=37.71 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC
Q 047109 56 TTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW 135 (808)
Q Consensus 56 ~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w 135 (808)
+.+..|. +.++.+|+=+. .+.++.++..+-+...+|+|... .| ++...++.-+-
T Consensus 58 ~~~~~L~-~~g~~~IVIAC-NTa~~~al~~lr~~~~iPvigii--~p----------------------a~~~A~~~~~~ 111 (269)
T 3ist_A 58 EMTNFLV-DRGIKMLVIAC-NTATAAALYDIREKLDIPVIGVI--QP----------------------GSRAALKATRN 111 (269)
T ss_dssp HHHHHHH-HTTCSEEEECC-HHHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCSS
T ss_pred HHHHHHH-HCCCCEEEEeC-CCccHHHHHHHHHhcCCCEEeec--HH----------------------HHHHHHHHcCC
Confidence 3444444 45999999876 55555456677777899999731 01 11112233456
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC----hHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT----DDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
++|++|......-. ..+++.+++. +..+..... +.....+ ...+...++.+++.++|.||+.|.
T Consensus 112 ~~IGVLaT~~Ti~s----~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCT 187 (269)
T 3ist_A 112 NKIGVLGTLGTVES----MAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCT 187 (269)
T ss_dssp SEEEEEECHHHHHH----THHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECST
T ss_pred CeEEEEeccchhhH----HHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 78888886653221 2333334433 334332110 1110001 223556667777788999999876
Q ss_pred H-HHHHHHHH
Q 047109 204 H-ALASHLFL 212 (808)
Q Consensus 204 ~-~~~~~~l~ 212 (808)
. +-....++
T Consensus 188 h~pll~~~i~ 197 (269)
T 3ist_A 188 HYPLLKPIIE 197 (269)
T ss_dssp TGGGGHHHHH
T ss_pred CHHHHHHHHH
Confidence 5 33444443
No 221
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=67.70 E-value=44 Score=33.19 Aligned_cols=70 Identities=9% Similarity=-0.002 Sum_probs=46.2
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.+..- .+++++... +...++..|.+|++|+++.... .....+. ..|+....++++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLP---ELQTGFF-QRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECT---------TSSCHHHHHHHTSCCEEEECCT---TCCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcccHHHHHHCCCCCEEEecCC---CCCCCce-EEEeeccceEEEEe
Confidence 34567788887774 346665543 3467899999999999986421 1122233 35777888888888
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 185 ~~hp 188 (315)
T 1uth_A 185 KDHP 188 (315)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 6643
No 222
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=67.38 E-value=5.8 Score=41.49 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.++++.++.+++.++++...... ...+.+.+.+++.|+.+.....+.. .++.+.....++.+++.++|+||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~-g~~~~v~~~L~~~g~~~~~~~~~~~-~p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQC-GVVAKVTDKMDAAGLAWAIYDGVVP-NPTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHT-THHHHHHHHHHHTTCEEEEECBCCS-SCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhc-hHHHHHHHHHHHcCCeEEEECCccC-CCCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 4566777778899999886554433 4788999999999988654333444 4466788888888888899999977654
Q ss_pred H--HHHHHHHHHH
Q 047109 205 A--LASHLFLNAK 215 (808)
Q Consensus 205 ~--~~~~~l~~a~ 215 (808)
. |+..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3 4444444433
No 223
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=66.70 E-value=11 Score=39.54 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
..+.+.++.+|.+++.+++++.........+.+.+.+++.|+.+.....+.. .++.+.....++.+++.++|+||-.+.
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~-~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKP-NPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCS-SCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccC-CCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3456677778889999998644332213678899999999988653322333 345678888888888899999997765
Q ss_pred HH--HHHHHHH
Q 047109 204 HA--LASHLFL 212 (808)
Q Consensus 204 ~~--~~~~~l~ 212 (808)
+. |+..++.
T Consensus 111 GsviD~AK~iA 121 (407)
T 1vlj_A 111 GSVVDSAKAVA 121 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 53 3444443
No 224
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=66.44 E-value=70 Score=30.24 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc-ccEEEeceeeeccc---cceee--ccccceeccEE
Q 047109 449 VDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK-FDAVVGETTITANR---SLYVD--FTLPYTDMGIG 522 (808)
Q Consensus 449 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~r---~~~~d--fs~p~~~~~~~ 522 (808)
-++++.+.++.|.++++.+- +-..++..+.+|. +|+.++.-.-..++ ...+. ...++....++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~~-----------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lv 90 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSFA-----------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLV 90 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEEE-----------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEE
T ss_pred HHHHHHHHhccCCeEEEEEC-----------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEE
Confidence 46788888888876666543 3367788888887 99987642111111 12222 23477888899
Q ss_pred EEEecCC
Q 047109 523 MIVPTDR 529 (808)
Q Consensus 523 ~lv~~~~ 529 (808)
+++++.+
T Consensus 91 l~~~~~~ 97 (237)
T 3r26_A 91 VVAPKAS 97 (237)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998864
No 225
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=66.21 E-value=15 Score=35.59 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=66.2
Q ss_pred HHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc
Q 047109 54 ALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF 133 (808)
Q Consensus 54 a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~ 133 (808)
+.+.+..|. +.++.+|+-+. .+..+..+..+-+..++|++... . .++...++..
T Consensus 51 ~~~~~~~L~-~~g~d~iviaC-nTa~~~~~~~lr~~~~iPvigi~------------------e------~~~~~A~~~~ 104 (254)
T 1b73_A 51 SLECAGFLK-DKGVDIIVVAC-NTASAYALERLKKEINVPVFGVI------------------E------PGVKEALKKS 104 (254)
T ss_dssp HHHHHHHHH-TTTCSEEEECC-HHHHTTSHHHHHHHSSSCEEESH------------------H------HHHHHHHHHC
T ss_pred HHHHHHHHH-HCCCCEEEEeC-chhhHHHHHHHHHhCCCCEEeee------------------H------HHHHHHHHcc
Confidence 344444444 45999999875 44443345566666789998832 1 0111123334
Q ss_pred CCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEe---cCCCCC---C----hHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 134 KWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRIT---ISMSSN---T----DDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 134 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~---~~~~~~---~----~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
+-++|+++......-. ...++.+++.|+.+..... ++.-.. + ...+...++.+.+. +|+||+.|.
T Consensus 105 ~~~rigVlaT~~T~~~----~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT 179 (254)
T 1b73_A 105 RNKKIGVIGTPATVKS----GAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCT 179 (254)
T ss_dssp SSCEEEEEECHHHHHH----CHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCC
T ss_pred CCCEEEEEEChHHhhh----HHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECcc
Confidence 6689999986654322 2334555567877653211 110000 1 12344555555555 999999876
Q ss_pred HH
Q 047109 204 HA 205 (808)
Q Consensus 204 ~~ 205 (808)
.-
T Consensus 180 ~~ 181 (254)
T 1b73_A 180 HY 181 (254)
T ss_dssp CT
T ss_pred Ch
Confidence 54
No 226
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=65.52 E-value=31 Score=34.09 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc
Q 047109 54 ALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF 133 (808)
Q Consensus 54 a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~ 133 (808)
+.+.+..++++.++.+|+-+. .+..+..+..+-+..++|+|... |. . ..+ ++.-
T Consensus 72 ~~~i~~~ll~~~g~d~IviaC-NTas~~~l~~lr~~~~iPVigi~---~a-------------~-----~~a----~~~~ 125 (285)
T 2jfn_A 72 VVAIVTAVQERYPLALAVVAC-NTASTVSLPALREKFDFPVVGVV---PA-------------I-----KPA----ARLT 125 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECC-HHHHHHHHHHHHHHCSSCEECCC---CC-------------H-----HHH----HHHC
T ss_pred HHHHHHHHHHhCCCCEEEEEC-ccccHHHHHHHHHhCCCCEEehH---HH-------------H-----HHH----HHhc
Confidence 334444455546899999875 55444566677777899999832 22 1 011 1224
Q ss_pred CCcEEEEEEecCCccccCcHHHHHHhhhcCC--cEEEEEEe-----------cCCCCCChHHHHHHHHHhcC--CCCeEE
Q 047109 134 KWKHVILIYEDNTWGSDNIIPYLFDSLHDND--IDIARRIT-----------ISMSSNTDDQVIEKLSMLKS--SETKVF 198 (808)
Q Consensus 134 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g--~~i~~~~~-----------~~~~~~~~~~~~~~l~~l~~--~~~~vi 198 (808)
+-++|+++......- ...+++.+++.| ..+..... ... ......+...+..+.+ .++|+|
T Consensus 126 ~~~rIgVLaT~~T~~----s~~y~~~l~~~g~~~~v~~~~~~~lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~I 200 (285)
T 2jfn_A 126 ANGIVGLLATRGTVK----RSYTHELIARFANECQIEMLGSAEMVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTV 200 (285)
T ss_dssp SSSEEEEEECTTGGG----CHHHHHHHHHSCTTSEEEEEECHHHHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEE
T ss_pred CCCEEEEEEcHHHHh----hHHHHHHHHHhCCCCEEeCCCCHHHHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEE
Confidence 557888887654321 134555565555 33322110 001 1123456666667654 478999
Q ss_pred EEEcCHH
Q 047109 199 VVHMSHA 205 (808)
Q Consensus 199 il~~~~~ 205 (808)
|+.|..-
T Consensus 201 VLGCTh~ 207 (285)
T 2jfn_A 201 VLGCTHF 207 (285)
T ss_dssp EECSTTG
T ss_pred EEeCCCc
Confidence 9987654
No 227
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=64.63 E-value=25 Score=34.72 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=64.9
Q ss_pred HHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcC
Q 047109 55 LTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFK 134 (808)
Q Consensus 55 ~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~ 134 (808)
.+.+..|. +.++.+|+-+. .+..+..+..+-+..++|+|... .| ++...++.-+
T Consensus 74 ~~~~~~L~-~~g~d~IVIaC-NTas~~~l~~lr~~~~iPVigi~--e~----------------------a~~~A~~~~~ 127 (286)
T 2jfq_A 74 VEIARKLM-EFDIKMLVIAC-NTATAVALEYLQKTLSISVIGVI--EP----------------------GARTAIMTTR 127 (286)
T ss_dssp HHHHHHHT-TSCCSEEEECC-HHHHHHHHHHHHHHCSSEEEESH--HH----------------------HHHHHHHHCS
T ss_pred HHHHHHHH-HCCCCEEEEeC-CchhHHHHHHHHHhCCCCEEecc--HH----------------------HHHHHHHhcC
Confidence 34444444 45999999876 55554456667677789999832 11 1111122345
Q ss_pred CcEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC-----hHHHHHHHHHhcCCCCeEEEEE
Q 047109 135 WKHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT-----DDQVIEKLSMLKSSETKVFVVH 201 (808)
Q Consensus 135 w~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~-----~~~~~~~l~~l~~~~~~viil~ 201 (808)
-++|++|........ ..+++.+++. +..+..... +.....+ ...+...++.+++.++|+||+.
T Consensus 128 ~~rIgVLaT~~T~~~----~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLG 203 (286)
T 2jfq_A 128 NQNVLVLGTEGTIKS----EAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILG 203 (286)
T ss_dssp SSEEEEEECHHHHHH----THHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEE
T ss_pred CCEEEEEeChHHhcc----hHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEc
Confidence 678888875543211 1234444433 555432111 1110001 2235566667777789999998
Q ss_pred cCHH
Q 047109 202 MSHA 205 (808)
Q Consensus 202 ~~~~ 205 (808)
|..-
T Consensus 204 CTh~ 207 (286)
T 2jfq_A 204 CTHY 207 (286)
T ss_dssp SSSG
T ss_pred CcCH
Confidence 7654
No 228
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=64.28 E-value=23 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred cCCcEEEEEEecCCccc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEc
Q 047109 133 FKWKHVILIYEDNTWGS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHM 202 (808)
Q Consensus 133 ~~w~~v~ii~~d~~~g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~ 202 (808)
|.--+++||...|+-|. +.....+...+++.|+.+.....++. +.+.+...+++..+. ++|+||..+
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D---d~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE---NRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC---CHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 33458999998887665 34557788889999999888777765 667888888877654 689998864
No 229
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=63.81 E-value=20 Score=35.57 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=70.4
Q ss_pred HHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcC
Q 047109 55 LTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFK 134 (808)
Q Consensus 55 ~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~ 134 (808)
.+.+..|. +.++.+|+-+. .+..+..+..+-+..+||+|... .|. ++. .++.-+
T Consensus 76 ~~~~~~L~-~~g~d~IVIAC-NTas~~~l~~lr~~~~iPVigii--epa-------------------~~~---A~~~~~ 129 (290)
T 2vvt_A 76 WEMADFLL-KKRIKMLVIAC-NTATAVALEEIKAALPIPVVGVI--LPG-------------------ARA---AVKVTK 129 (290)
T ss_dssp HHHHHHHH-TTTCSEEEECC-HHHHHHHHHHHHHHCSSCEEESS--HHH-------------------HHH---HHHHCS
T ss_pred HHHHHHHH-HCCCCEEEEeC-cchhHHHHHHHHHhCCCCEEccc--HHH-------------------HHH---HHHhcC
Confidence 44444444 45999999876 55554566677777899999832 111 111 122345
Q ss_pred CcEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC----hHHHHHHHHHhcCCCCeEEEEEc
Q 047109 135 WKHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT----DDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 135 w~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~l~~~~~~viil~~ 202 (808)
-++|++|......-. ..+++.+++. +..+..... +.....+ ...+...++.+.+.++|+||+.|
T Consensus 130 ~~rIgVLaT~~T~~s----~~y~~~l~~~~~~~~v~~~~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGC 205 (290)
T 2vvt_A 130 NNKIGVIGTLGTIKS----ASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGC 205 (290)
T ss_dssp SSEEEEEECHHHHHT----THHHHHHHTTCTTSEEEEEECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECS
T ss_pred CCEEEEEeCcHhhhh----HHHHHHHHHhCCCCEEEeccCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 679999986653222 1344455554 455542211 0010001 12355666677777899999987
Q ss_pred CHH-HHHHHHHH
Q 047109 203 SHA-LASHLFLN 213 (808)
Q Consensus 203 ~~~-~~~~~l~~ 213 (808)
..- .....+++
T Consensus 206 Th~p~l~~~i~~ 217 (290)
T 2vvt_A 206 THYPLLRPVIQN 217 (290)
T ss_dssp TTGGGGHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 653 34444443
No 230
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=63.19 E-value=19 Score=35.41 Aligned_cols=130 Identities=20% Similarity=0.261 Sum_probs=69.6
Q ss_pred HHHHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhc
Q 047109 54 ALTTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVF 133 (808)
Q Consensus 54 a~~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~ 133 (808)
+.+.+..|.+..++.+|+-+. .+.++..+..+-+..++|+|... .|. ++. .++.-
T Consensus 54 ~~~~~~~L~~~~g~d~iViAC-NTas~~~l~~lr~~~~iPVigii--epa-------------------~~~---A~~~~ 108 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIAC-NTATAIALDDIQRSVGIPVVGVI--QPG-------------------ARA---AIKVT 108 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECC-HHHHHHHHHHHHHHCSSCEEESH--HHH-------------------HHH---HHHHC
T ss_pred HHHHHHHHHhhcCCCEEEEeC-chhhHHHHHHHHHHCCCCEEccc--HHH-------------------HHH---HHHhc
Confidence 344555555415899999876 55554566677777899998832 011 111 12234
Q ss_pred CCcEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEEEe------cCCCCCC----hHHHHHHHHHhcCCCCeEEEEE
Q 047109 134 KWKHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARRIT------ISMSSNT----DDQVIEKLSMLKSSETKVFVVH 201 (808)
Q Consensus 134 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~l~~~~~~viil~ 201 (808)
+-++|+++........ . .+++.+++. +..+..... +.....+ ...+...++.+++.++|.||+.
T Consensus 109 ~~~rIgVlaT~~T~~s-~---~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLG 184 (272)
T 1zuw_A 109 DNQHIGVIGTENTIKS-N---AYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILG 184 (272)
T ss_dssp SSSEEEEEECHHHHHT-T---HHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEEEChhhhhh-h---HHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 5678999886543222 1 233344433 555532111 1110111 1235556677777789999998
Q ss_pred cCHH-HHHHHHH
Q 047109 202 MSHA-LASHLFL 212 (808)
Q Consensus 202 ~~~~-~~~~~l~ 212 (808)
|..- .....++
T Consensus 185 CTh~pll~~~i~ 196 (272)
T 1zuw_A 185 CTHYPILKEAIQ 196 (272)
T ss_dssp STTGGGGHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 7654 3444443
No 231
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=62.17 E-value=1e+02 Score=28.67 Aligned_cols=68 Identities=4% Similarity=-0.101 Sum_probs=48.2
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- ++++++... +...++..|.+|++|+++..... ..+ -+.++....++++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~l~i~~~---------~~~~~~~~L~~g~~Dl~i~~~~~-----~~~-~~~~l~~~~~~~v~~ 104 (238)
T 3onm_A 41 LLPFLLNRVATLYP-RLAIDVRVK---------RSPFIADMLSSGEVDLAITTAKV-----DSH-PHVILRTSPTLWYCS 104 (238)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEEC---------CHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEEC---------CHHHHHHHHHCCCccEEEEecCC-----CCc-ceEEeecCCEEEEEc
Confidence 45678888888764 346665554 66889999999999999864321 123 246788889999998
Q ss_pred cCCC
Q 047109 527 TDRN 530 (808)
Q Consensus 527 ~~~~ 530 (808)
+..+
T Consensus 105 ~~~~ 108 (238)
T 3onm_A 105 VDYQ 108 (238)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 7643
No 232
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=59.04 E-value=33 Score=33.75 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=40.0
Q ss_pred cCCceeee-cCCcHHHhh----hccCCCcccccccC-CHHHHHHHHhcCCCCCceEEEEechhhHHHHHhc
Q 047109 637 SRDNIGSQ-LGSFVPGAL----SNLNFKDSRLKKYN-SAEEFANALSKGSKNGGISAIIDEIPYIKAFLAK 701 (808)
Q Consensus 637 ~~~~i~~~-~~s~~~~~l----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 701 (808)
++++|++. .+++.+..+ ++.+. +.++.... +..+...++.+|+ +|+.+...........+
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRK 160 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhh
Confidence 79999975 566655444 33444 33444344 5889999998888 99988876666554433
No 233
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=58.66 E-value=15 Score=35.98 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=47.9
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccc-------hhhHHHHHHHHHHHHHHHHhhhhhheeeeehhhh
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSN-------WSKFVVIVWVFVVLILTSSYTATLTSMLTVQQIK 634 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~-------s~Ril~~~w~~~~lil~~~Y~a~L~s~lt~~~~~ 634 (808)
.++.+++|+++.++.--+ ...|.+. .+|++..+|+++++.+.+...+.+++++...++.
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~ 267 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999998888655 2345444 3699999999999999999999999999887774
No 234
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=58.53 E-value=1.4e+02 Score=29.21 Aligned_cols=69 Identities=9% Similarity=0.069 Sum_probs=47.3
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.+..- .+++++... +...++.+|.+|++|+++..... ....+. +.++....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~-~~~L~~~~~~~v~~ 169 (312)
T 2h9b_A 104 LLPRIIHLYRQAHP-NLRIELYEM---------GTKAQTEALKEGRIDAGFGRLKI---SDPAIK-HSLLRNERLMVAVH 169 (312)
T ss_dssp THHHHHHHHHHTCT-TCEEEEEEC---------CHHHHHHHHHTTSCSEEEESSCC---CCTTEE-EEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHcCCCCEEEEeCCC---CCCCce-EEEeecceEEEEEc
Confidence 35678888888764 356666553 56889999999999999864322 122233 35778888888888
Q ss_pred cCC
Q 047109 527 TDR 529 (808)
Q Consensus 527 ~~~ 529 (808)
+..
T Consensus 170 ~~h 172 (312)
T 2h9b_A 170 ASH 172 (312)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 235
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=58.50 E-value=12 Score=38.91 Aligned_cols=75 Identities=9% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.+.++.+| +++.+|++...+. ...+.+.+.+++ |+.+.+. .+.. ..+.+.....++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~--~~~~~v~~~L~~-g~~~~~~-~~~~-~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD--ALSERIGKSCGD-SLDIRFE-RFGG-ECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH--HHHHHC-------CCEEEEE-ECCS-SCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH--HHHHHHHHHHHc-CCCeEEE-EcCC-CCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 4567788888 9999998665443 356777888888 9887443 3444 4566788888888888889998888766
Q ss_pred H
Q 047109 205 A 205 (808)
Q Consensus 205 ~ 205 (808)
.
T Consensus 117 s 117 (387)
T 3uhj_A 117 K 117 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 236
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=58.04 E-value=94 Score=27.99 Aligned_cols=65 Identities=6% Similarity=0.028 Sum_probs=41.7
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... + .+.+|.+|++|+++...... ...+. +.++....++++++
T Consensus 21 ~l~~~l~~f~~~~P-~v~l~i~~~-----------~-~~~~l~~g~~D~~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (213)
T 3hhf_B 21 LLAPLAAKFNERYP-HIRLSLVSS-----------E-GYINLIERKVDIALRAGELD---DSGLR-ARHLFDSRFRVIAS 83 (213)
T ss_dssp THHHHHHHHHHHCT-TEEEEEECC-----------S-TTHHHHTTSSSEEEECC--C---CSSEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC-----------C-cHHHHHhCCccEEEEEecCC---Cccce-EEeeecceEEEEeC
Confidence 45678888888775 356655532 1 13458899999998643221 22333 46788888999987
Q ss_pred cC
Q 047109 527 TD 528 (808)
Q Consensus 527 ~~ 528 (808)
+.
T Consensus 84 ~~ 85 (213)
T 3hhf_B 84 PE 85 (213)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 237
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=57.65 E-value=9.2 Score=36.63 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=51.1
Q ss_pred EEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc---ceeeccccceeccEE
Q 047109 446 GFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS---LYVDFTLPYTDMGIG 522 (808)
Q Consensus 446 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~ 522 (808)
|+--+|+..+.++.|.++++.... -..++..+.+|.+|+.+..-....+.. ....-..++....++
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~g-----------Sg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lV 87 (236)
T 3lr1_A 19 GLLKVLLPPFEKKNNVKVDVIAVG-----------TGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFV 87 (236)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEEC-----------HHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcC-----------hHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEE
Confidence 566788889988888766555443 367899999999999876543222211 111124588889999
Q ss_pred EEEecCCCC
Q 047109 523 MIVPTDRNN 531 (808)
Q Consensus 523 ~lv~~~~~~ 531 (808)
+++|+.++.
T Consensus 88 lV~P~~~P~ 96 (236)
T 3lr1_A 88 IVGPKNDPA 96 (236)
T ss_dssp EEECTTCTT
T ss_pred EEEECCChh
Confidence 999987653
No 238
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=56.91 E-value=22 Score=35.44 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=57.4
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHH-HHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHAL-ASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~l~ 212 (808)
++|+++..+ +.|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQ-KDRDIFVKKAESLGAKVFVQSA----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTH-HHHHHHHHHHHHTSCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888865 45666 7889999999999998876432 224455567778887788999988765443 356788
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8887775
No 239
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=54.18 E-value=1.6e+02 Score=28.37 Aligned_cols=69 Identities=6% Similarity=0.040 Sum_probs=47.8
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-.+++..+.++.- .+++++... +...++..|.+|++|+++..... ....+. ..|+....++++++
T Consensus 105 ~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 170 (294)
T 1ixc_A 105 SLPLLLRAFLTSTP-TATVSLTHM---------TKDEQVEGLLAGTIHVGFSRFFP---RHPGIE-IVNIAQEDLYLAVH 170 (294)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESCCC---CCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHCCCccEEEEecCC---CCCCce-EEEEeeccEEEEEe
Confidence 35678888888775 456666654 45788999999999999864322 122333 35778888889888
Q ss_pred cCC
Q 047109 527 TDR 529 (808)
Q Consensus 527 ~~~ 529 (808)
+..
T Consensus 171 ~~~ 173 (294)
T 1ixc_A 171 RSQ 173 (294)
T ss_dssp GGG
T ss_pred CCC
Confidence 764
No 240
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=53.74 E-value=32 Score=35.25 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.++++.++.+++.++++...+. ...+.+.+.+++.|+.+......+. .+.+..... +.+++.+.|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~~~livtd~~~~~--~~~~~v~~~L~~~g~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~d~IIavGGG 98 (354)
T 3ce9_A 24 NIGQIIKKGNFKRVSLYFGEGIYE--LFGETIEKSIKSSNIEIEAVETVKN--IDFDEIGTN-AFKIPAEVDALIGIGGG 98 (354)
T ss_dssp GHHHHHGGGTCSEEEEEEETTHHH--HHHHHHHHHHHTTTCEEEEEEEECC--CBHHHHHHH-HTTSCTTCCEEEEEESH
T ss_pred HHHHHHHhcCCCeEEEEECccHHH--HHHHHHHHHHHHcCCeEEEEecCCC--CCHHHHHHH-HHhhhcCCCEEEEECCh
Confidence 456777778889999998665432 3568888889989988754332343 356677777 88888899999977655
Q ss_pred H--HHHHHHH
Q 047109 205 A--LASHLFL 212 (808)
Q Consensus 205 ~--~~~~~l~ 212 (808)
. |+..++.
T Consensus 99 sv~D~aK~vA 108 (354)
T 3ce9_A 99 KAIDAVKYMA 108 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3 3444433
No 241
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=53.67 E-value=15 Score=35.10 Aligned_cols=74 Identities=8% Similarity=-0.039 Sum_probs=49.7
Q ss_pred EEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc---ceeeccccceeccEE
Q 047109 446 GFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS---LYVDFTLPYTDMGIG 522 (808)
Q Consensus 446 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~ 522 (808)
|+--+|+..+.++.|.++++.+.. -..++..+.+|.+|+.+..-....+.. ....-..|+....++
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~g-----------Sg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lV 87 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAAG-----------TGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFV 87 (237)
T ss_dssp THHHHHHHHHHHHHCCEEEEEEEC-----------HHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhCceEEEEEcC-----------hHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEE
Confidence 556678888988888765555443 367889999999999876433222211 011123678888899
Q ss_pred EEEecCCC
Q 047109 523 MIVPTDRN 530 (808)
Q Consensus 523 ~lv~~~~~ 530 (808)
+++|+.++
T Consensus 88 lV~P~~~P 95 (237)
T 3muq_A 88 IVGPKADP 95 (237)
T ss_dssp EEECTTCT
T ss_pred EEEeCCCh
Confidence 99988754
No 242
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=52.25 E-value=62 Score=31.89 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=55.1
Q ss_pred cCCceeeecCCcHHHhhhccCCCccccc-ccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecccccc
Q 047109 637 SRDNIGSQLGSFVPGALSNLNFKDSRLK-KYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTT 715 (808)
Q Consensus 637 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 715 (808)
.+.+|++..-.....||.+.+.. .++. .+.+.+-. -..|- .|+++.--.+..-+-++ +|+.+++.+.
T Consensus 128 ~~~RIATkYp~l~r~yf~~~gi~-~~Ii~l~GsvE~a---P~~Gl----ADaIvDiVsTG~TLraN---gL~~i~e~I~- 195 (304)
T 1nh8_A 128 AGMRIATAYPNLVRKDLATKGIE-ATVIRLDGAVEIS---VQLGV----ADAIADVVGSGRTLSQH---DLVAFGEPLC- 195 (304)
T ss_dssp TTCEEEESCHHHHHHHHHHHTCC-CEEEECSSCCTHH---HHTTS----CSEEEEEESSSHHHHHT---TEEEEEEEEE-
T ss_pred CCCEEEeCcHHHHHHHHHHCCCe-EEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHC---cCEEcccEEE-
Confidence 67888877666677888765664 3333 33444422 22344 66666554444443333 6777866666
Q ss_pred ccceEEEEeCCCC-C--hHHHHHHHHhhhh
Q 047109 716 TSGFGFVFQKGSP-L--VHDISRAIAKLRE 742 (808)
Q Consensus 716 ~~~~~~~~~k~sp-~--~~~~~~~i~~l~e 742 (808)
.....+..+|.+. . .+.++..+.+|+.
T Consensus 196 ~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 225 (304)
T 1nh8_A 196 DSEAVLIERAGTDGQDQTEARDQLVARVQG 225 (304)
T ss_dssp EECEEEEEEC--------CHHHHHHHHHHH
T ss_pred EEEEEEEEccccchhhhHHHHHHHHHHHHH
Confidence 6777788888762 2 2467778877764
No 243
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=51.70 E-value=4.3 Score=38.91 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=43.8
Q ss_pred HHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHHHhcCC
Q 047109 56 TTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLIRVFKW 135 (808)
Q Consensus 56 ~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll~~~~w 135 (808)
+.+..|. +.|+.+|+-+. .+... .+..+-+..++|++... ++.++-+...+-
T Consensus 67 ~~~~~L~-~~g~~~iviaC-NTa~~-~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~~ 118 (231)
T 3ojc_A 67 NAAISLK-HAGAEVIVVCT-NTMHK-VADDIEAACGLPLLHIA-------------------------DATAVQIKQQGI 118 (231)
T ss_dssp HHHHHHH-HHTCCEEEECS-SGGGG-GHHHHHHHHCSCBCCHH-------------------------HHHHHHHHHTTC
T ss_pred HHHHHHH-hcCCCEEEEeC-CchHH-HHHHHHHhCCCCEeccH-------------------------HHHHHHHHHcCC
Confidence 3334444 45899998876 44332 23445555678877621 222333333467
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcC-CcEEE
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDN-DIDIA 168 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~-g~~i~ 168 (808)
++|+++......-. ..+++.+++. |+.+.
T Consensus 119 ~rVgvLaT~~T~~s----~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 119 DKIGLLGTRYTMEQ----GFYRGRLTEKHGIEVI 148 (231)
T ss_dssp CEEEEESCHHHHHS----TTTHHHHHHTTCCEEE
T ss_pred CEEEEEcCHHHhhc----hHHHHHHHhcCCCEEE
Confidence 89999986653222 1223444455 77764
No 244
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=51.59 E-value=14 Score=36.87 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheeee
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSMLT 629 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~lt 629 (808)
++.+++|++..++.--| ...|.+..+|++.+++.++++.+.....+++...+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999888655 457999999999999999999999999999987663
No 245
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=50.61 E-value=28 Score=34.10 Aligned_cols=79 Identities=6% Similarity=0.129 Sum_probs=57.0
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
++|+++..+. .|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDL-KAYQAQIAEIERLGGTAIALDA----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEEcC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 5789988753 3444 6788999999999998876432 2244555667777877889998887654 45667788
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888875
No 246
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.21 E-value=43 Score=32.48 Aligned_cols=79 Identities=8% Similarity=-0.027 Sum_probs=56.8
Q ss_pred CCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHH
Q 047109 134 KWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLF 211 (808)
Q Consensus 134 ~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l 211 (808)
+-+.|+++..+- .|-. ...+.+.+.+++.|+.+..... ..+...-...++.+.+.+.|.||+..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFST-ELFKGISSILESRGYIGVLFDA----NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCEEEEEESCTTSHHHH-HHHHHHHHHHHTTTCEEEEEEC----TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred CCcEEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 346789988653 3445 6788899999999998876432 22444556778888888999999987655 5677
Q ss_pred HHHHHcCC
Q 047109 212 LNAKKLGM 219 (808)
Q Consensus 212 ~~a~~~gl 219 (808)
+.+.+.|+
T Consensus 79 ~~l~~~~i 86 (276)
T 3jy6_A 79 QEILHQQM 86 (276)
T ss_dssp HHHHTTSS
T ss_pred HHHHHCCC
Confidence 77777775
No 247
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=49.29 E-value=52 Score=29.41 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=49.3
Q ss_pred cCCcEEEEEEecCCccc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEc
Q 047109 133 FKWKHVILIYEDNTWGS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHM 202 (808)
Q Consensus 133 ~~w~~v~ii~~d~~~g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~ 202 (808)
|.--+++||...|+-|. +.....+...+++.|+.+.....++. +.+.+...+++..+ .++|+||..+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D---d~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD---DKESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS---SHHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC---CHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 44568999987776554 24557788888899999887777665 56778888887765 3789998864
No 248
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=49.26 E-value=2e+02 Score=28.18 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=47.2
Q ss_pred EeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEe
Q 047109 447 FCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVP 526 (808)
Q Consensus 447 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~ 526 (808)
+-..++..+.+..- .+++++... +...++.+|.+|++|+++..... ....+. ..++....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~-~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 104 LLPEIIYLFRQQNP-EIHIELIEC---------GTKDQINALKQGKIDLGFGRLKI---TDPAIR-RIMLHKEQLKLAIH 169 (313)
T ss_dssp THHHHHHHHHHHCT-TSEEEEEEC---------CHHHHHHHHHHTSCSEEEESSCC---CCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEeC---------ChHHHHHHHHcCCCCEEEEeCCC---CCCCee-EEEeeeCcEEEEEc
Confidence 35678888888764 346665553 56789999999999999864322 122233 35778888888888
Q ss_pred cCC
Q 047109 527 TDR 529 (808)
Q Consensus 527 ~~~ 529 (808)
+..
T Consensus 170 ~~h 172 (313)
T 2h98_A 170 KHH 172 (313)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 249
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=48.86 E-value=1.7e+02 Score=28.87 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHhhhcCCeEEEE-ecCCCh--hHHHHHHHhcCCC-CccEEeccCCCCccccc-ceeeeccCCchhhHHH
Q 047109 49 GDPLHALTTVLNLMQNVDLQAII-CTEMTP--TGAHILAEIGSKA-KIPVISLYATLPSSLTS-YSIQIDQDDEASQSQA 123 (808)
Q Consensus 49 ~~~~~a~~~a~~li~~~~v~aii-G~~~~s--~~~~~~~~~~~~~-~iP~is~~~~~~~~ls~-~~~r~~p~~~~~~~~~ 123 (808)
-.+..+.+.+.+++.. ++.+++ ... .- .....+...+... ++.+|.|.+..-. -.. ...-..|.
T Consensus 79 vP~~~~~~~~~e~i~~-Gi~~iv~~t~-G~~~~~~~~l~~~a~~~~gi~liGPnc~Gii-~p~~~~~~~~~~-------- 147 (305)
T 2fp4_A 79 VPPPFAAAAINEAIDA-EVPLVVCITE-GIPQQDMVRVKHRLLRQGKTRLIGPNCPGVI-NPGECKIGIMPG-------- 147 (305)
T ss_dssp CCHHHHHHHHHHHHHT-TCSEEEECCC-CCCHHHHHHHHHHHTTCSSCEEECSSSCEEE-ETTTEEEESSCG--------
T ss_pred cCHHHHHHHHHHHHHC-CCCEEEEECC-CCChHHHHHHHHHHHhcCCcEEEeCCCCeEe-cccccceeeccc--------
Confidence 3556667777777765 777743 322 22 2244777888888 9999988764322 111 11111111
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCC-ChHHHHHHHHHhc-CCCCeEEEEE
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSN-TDDQVIEKLSMLK-SSETKVFVVH 201 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~l~~l~-~~~~~viil~ 201 (808)
..+.--+++++.++.. +...+.+.+.+.|+-+.....+-. .. .+.++...|+.+. +.++++|+++
T Consensus 148 -------~~~~~G~va~vSqSG~-----l~~~~~~~~~~~g~G~S~~vs~G~-~~~~~~~~~d~l~~~~~Dp~T~~I~l~ 214 (305)
T 2fp4_A 148 -------HIHKKGRIGIVSRSGT-----LTYEAVHQTTQVGLGQSLCVGIGG-DPFNGTDFTDCLEIFLNDPATEGIILI 214 (305)
T ss_dssp -------GGCCEEEEEEEESCSH-----HHHHHHHHHHHTTCCEEEEEECCS-SSSCSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred -------cCCCCCCEEEEecchH-----HHHHHHHHHHhcCCCeeEEeccCC-CcCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 0123457999987764 445666677777776666555543 21 1345666666664 4678999998
Q ss_pred cCH-----HHHHHHHHHHHH
Q 047109 202 MSH-----ALASHLFLNAKK 216 (808)
Q Consensus 202 ~~~-----~~~~~~l~~a~~ 216 (808)
... .+++.|++++++
T Consensus 215 ~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 215 GEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp EESSSSHHHHHHHHHHHHSC
T ss_pred EecCCchhhHHHHHHHHHHH
Confidence 764 568999998765
No 250
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=48.66 E-value=31 Score=33.63 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCC-CccEEe
Q 047109 56 TTVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKA-KIPVIS 96 (808)
Q Consensus 56 ~~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~-~iP~is 96 (808)
+.+..|. +.|+.+|+-+. .+..+.++..+-+.. ++|+|.
T Consensus 60 ~~~~~L~-~~g~~~iVIAC-NTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 60 QTAKFLI-DQEVKAIIIAC-NTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHH-HTTCSEEEECC-HHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHH-HCCCCEEEEeC-CChHHHHHHHHHHhcCCCCEEe
Confidence 3344444 45999999876 555555666677777 899998
No 251
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=48.41 E-value=37 Score=30.17 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=45.5
Q ss_pred EEEEEEecCC--ccc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEc
Q 047109 137 HVILIYEDNT--WGS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHM 202 (808)
Q Consensus 137 ~v~ii~~d~~--~g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~ 202 (808)
+++||...|+ .|+ +.....+...+++.|..+.....++. +.+.+...+++..+. ++|+||..+
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D---d~~~i~~~l~~~~~~~~~DlVittG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD---EPPMIKKVLRLWADREGLDLILTNG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS---CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC---CHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5677775553 222 24567888999999999887777765 667888888877654 689998864
No 252
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=48.05 E-value=62 Score=33.82 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred cEEEEEEecCCccc-cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH------HHHH
Q 047109 136 KHVILIYEDNTWGS-DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH------ALAS 208 (808)
Q Consensus 136 ~~v~ii~~d~~~g~-~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~------~~~~ 208 (808)
++|.|+| .+.||. ...++.+.+.+.+.|+.++....... ...+...++..+. +++.+++.+.. +...
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~---~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE---ERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS---CCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccC---CCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 4899999 555765 14578899999999998765444333 3345666677765 45666665432 3455
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCcccc
Q 047109 209 HLFLNAKKLGMMSKGYSWIVTASTMN 234 (808)
Q Consensus 209 ~~l~~a~~~gl~~~~~~~i~~~~~~~ 234 (808)
.++.........++....+++-+|..
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCc
Confidence 67777777766444445666666753
No 253
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=47.77 E-value=1e+02 Score=24.41 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEE
Q 047109 121 SQAKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVF 198 (808)
Q Consensus 121 ~~~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vi 198 (808)
..-+-++.-+++.| -++.++|+|.+-- -...-.+.++++|..+-.. .+.+|++..+..+-. .+-+++
T Consensus 13 eilkeivreikrqg-vrvvllysdqdek---rrrerleefekqgvdvrtv-------edkedfrenireiwerypqldvv 81 (162)
T 2l82_A 13 EILKEIVREIKRQG-VRVVLLYSDQDEK---RRRERLEEFEKQGVDVRTV-------EDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp HHHHHHHHHHHHTT-CEEEEEECCSCHH---HHHHHHHHHHTTTCEEEEC-------CSHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhCC-eEEEEEecCchHH---HHHHHHHHHHHcCCceeee-------ccHHHHHHHHHHHHHhCCCCcEE
Confidence 55566666677777 5788889775421 1233345678889886532 245677777766643 344565
Q ss_pred EEEc-CHH-HHHHHHHHHHHcCC
Q 047109 199 VVHM-SHA-LASHLFLNAKKLGM 219 (808)
Q Consensus 199 il~~-~~~-~~~~~l~~a~~~gl 219 (808)
++.. +.. -...|+.+|++-|.
T Consensus 82 vivttddkewikdfieeakergv 104 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTC
T ss_pred EEEecCcHHHHHHHHHHHHhcCc
Confidence 5554 333 37899999999985
No 254
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=46.43 E-value=33 Score=35.41 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.++++.++ +++.++++...+. ...+.+.+.+++.|+.+.. ..+.. ....+.....++.+++.++|+||-.+.+
T Consensus 22 ~l~~~l~~~g-~~~livtd~~~~~--~~~~~v~~~L~~~g~~~~~-~~~~g-e~~~~~v~~~~~~~~~~~~d~IIavGGG 96 (370)
T 1jq5_A 22 KIANYLEGIG-NKTVVIADEIVWK--IAGHTIVNELKKGNIAAEE-VVFSG-EASRNEVERIANIARKAEAAIVIGVGGG 96 (370)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHHH--HTHHHHHHHHHTTTCEEEE-EECCS-SCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHcC-CeEEEEEChHHHH--HHHHHHHHHHHHcCCeEEE-EeeCC-CCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 3566777778 9999998655432 3678888999999988753 22332 3344577777888888889999977654
Q ss_pred H--HHHHHHH
Q 047109 205 A--LASHLFL 212 (808)
Q Consensus 205 ~--~~~~~l~ 212 (808)
. |+..++-
T Consensus 97 sv~D~aK~iA 106 (370)
T 1jq5_A 97 KTLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3 3444433
No 255
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=46.24 E-value=48 Score=32.55 Aligned_cols=85 Identities=8% Similarity=0.071 Sum_probs=57.9
Q ss_pred cCCcEEEEEEecC---CccccCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH-HH
Q 047109 133 FKWKHVILIYEDN---TWGSDNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA-LA 207 (808)
Q Consensus 133 ~~w~~v~ii~~d~---~~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~ 207 (808)
-+-++|+++..+. .|-. ...+.+.+.+++. |..+........ ..+.......++.+.+.+.|.||+..... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~-~~~~gi~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWT-DVQKGIREAVTTYSDFNISANITHYD-PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHH-HHHHHHHHHHHHTGGGCEEEEEEEEC-SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHH-HHHHHHHHHHHHHHhCCeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCEEEECCCChHHH
Confidence 3446888888653 3444 6778888999988 777665443222 22455667778888888999998876544 34
Q ss_pred HHHHHHHHHcCC
Q 047109 208 SHLFLNAKKLGM 219 (808)
Q Consensus 208 ~~~l~~a~~~gl 219 (808)
...++.+.+.|+
T Consensus 84 ~~~~~~~~~~~i 95 (304)
T 3gbv_A 84 KGFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 667788888775
No 256
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=46.22 E-value=27 Score=35.46 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=56.2
Q ss_pred CcEEEEEEecC---CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcC--CCCeEEEEEcCHHHHHH
Q 047109 135 WKHVILIYEDN---TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKS--SETKVFVVHMSHALASH 209 (808)
Q Consensus 135 w~~v~ii~~d~---~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~ 209 (808)
-.+|+++..+. .|.. ...+.+.+.+++.|+.+..... ..+.......++++.+ .++|.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~-~~~~g~~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWV-SYSQFMQAAARDLGLDLRILYA----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHH-HHHHHHHHHHHHcCCeEEEEEC----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 36899998753 4555 6788899999999998876422 2244444556666665 58999998875555667
Q ss_pred HHHHHHHcCC
Q 047109 210 LFLNAKKLGM 219 (808)
Q Consensus 210 ~l~~a~~~gl 219 (808)
+++.+.+.|+
T Consensus 78 ~~~~~~~~gi 87 (350)
T 3h75_A 78 ILRLSQGSGI 87 (350)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhCCC
Confidence 7888877764
No 257
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=45.43 E-value=33 Score=33.39 Aligned_cols=71 Identities=8% Similarity=-0.049 Sum_probs=46.4
Q ss_pred eHHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc-ceeeccccceeccEEEEE
Q 047109 448 CVDVFKAAIDSL-TFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS-LYVDFTLPYTDMGIGMIV 525 (808)
Q Consensus 448 ~~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~-~~~dfs~p~~~~~~~~lv 525 (808)
-.+++..+.++. +. ++++... +...++..|.+|++|+++........+. ..+. ..|+....+++++
T Consensus 42 l~~~l~~f~~~~P~i--~v~i~~~---------~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~ 109 (290)
T 1twy_A 42 MDVLAEKYNQQHPET--YVAVQGV---------GSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVV 109 (290)
T ss_dssp HHHHHHHHHHHCTTC--EEEEEES---------CHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCc--eEEEEec---------CcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEE
Confidence 346777888877 54 4554443 5678899999999999986433222110 2233 3578888899999
Q ss_pred ecCCC
Q 047109 526 PTDRN 530 (808)
Q Consensus 526 ~~~~~ 530 (808)
++..+
T Consensus 110 ~~~~p 114 (290)
T 1twy_A 110 NQANP 114 (290)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 87643
No 258
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=45.19 E-value=3e+02 Score=29.19 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHhhhcCCeEEEEec--CCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHH
Q 047109 49 GDPLHALTTVLNLMQNVDLQAIICT--EMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGI 126 (808)
Q Consensus 49 ~~~~~a~~~a~~li~~~~v~aiiG~--~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~ 126 (808)
-.+..+...+.+.... |+.+||=. . .-.....+..++..+++.+|.|.+ .. ..-.-+..... .
T Consensus 44 vPa~~v~~~v~e~~~~-Gv~~viis~Gf-~~~~~~~l~~~A~~~g~rliGPNc--G~-~~~~~~~~~f~-~--------- 108 (480)
T 3dmy_A 44 VAGEYAAELANQALDR-NLNVMMFSDNV-TLEDEIQLKTRAREKGLLVMGPDC--GT-SMIAGTPLAFA-N--------- 108 (480)
T ss_dssp SCHHHHHHHHHHHHHT-TCEEEECCCCC-CHHHHHHHHHHHHHTTCCEECSSC--CE-EEETTEEEESC-C---------
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEECCCC-CHHHHHHHHHHHHHcCCEEEecCc--cc-cccCCcccccc-C---------
Confidence 3556677777777766 67755522 2 223345566788889999999988 22 11000001111 0
Q ss_pred HHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCC-----ChHHHHHHHHHhcC-CCCeEEEE
Q 047109 127 ADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSN-----TDDQVIEKLSMLKS-SETKVFVV 200 (808)
Q Consensus 127 ~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----~~~~~~~~l~~l~~-~~~~viil 200 (808)
.+.--+++++.++.. +...+.+.+.+.|+-+.....+-. .. .+.++...+..+.+ .++++|++
T Consensus 109 -----~~~~G~vaivSqSGa-----l~~~i~~~~~~~g~G~S~~Vs~Gn-~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~l 177 (480)
T 3dmy_A 109 -----VMPEGNIGVIGASGT-----GIQELCSQIALAGEGITHAIGLGG-RDLSREVGGISALTALEMLSADEKSEVLAF 177 (480)
T ss_dssp -----CCCEEEEEEEESCSH-----HHHHHHHHHHHTTCCEEEEEECCT-TTTSTTTTTHHHHHHHHHHHTCTTCCEEEE
T ss_pred -----CCCCCCEEEEeccHH-----HHHHHHHHHHHcCCCceEEEEcCC-CccccccCCCCHHHHHHHHhcCCCCCEEEE
Confidence 022348999987664 445667777778877776555544 21 34567788877764 67899999
Q ss_pred EcC---HHHHHHHHHHHHHcC
Q 047109 201 HMS---HALASHLFLNAKKLG 218 (808)
Q Consensus 201 ~~~---~~~~~~~l~~a~~~g 218 (808)
+.. ...++.|++++++.+
T Consensus 178 y~E~~~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 178 VSKPPAEAVRLKIVNAMKATG 198 (480)
T ss_dssp EESCCCHHHHHHHHHHHHHHC
T ss_pred EEecCCcHHHHHHHHHHHhCC
Confidence 874 334588999888654
No 259
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.02 E-value=74 Score=24.41 Aligned_cols=39 Identities=13% Similarity=0.486 Sum_probs=26.2
Q ss_pred ceeeeccCCchhhHHHHHHHHHHHhcCCcEEEEEEecCCccc
Q 047109 108 YSIQIDQDDEASQSQAKGIADLIRVFKWKHVILIYEDNTWGS 149 (808)
Q Consensus 108 ~~~r~~p~~~~~~~~~~a~~~ll~~~~w~~v~ii~~d~~~g~ 149 (808)
+-.|+.-+.. .+-..+-++++.|+-+-+.++.+|.+|..
T Consensus 27 fkvrtvrspq---elkdsieelvkkynativvvvvddkewae 65 (134)
T 2l69_A 27 FKVRTVRSPQ---ELKDSIEELVKKYNATIVVVVVDDKEWAE 65 (134)
T ss_dssp CEEEEECSHH---HHHHHHHHHTTCCCCEEEEEECSSHHHHH
T ss_pred ceEEEecCHH---HHHHHHHHHHHHhCCeEEEEEEccHHHHH
Confidence 4466666655 67777777777787776666665556554
No 260
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=44.70 E-value=65 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEec
Q 047109 57 TVLNLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISL 97 (808)
Q Consensus 57 ~a~~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~ 97 (808)
.+..|. +.++.+|+-+. .+.++..+..+-+..++|+|..
T Consensus 54 ~~~~L~-~~g~d~iviaC-NTa~~~~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 54 ALDFFK-PHEIELLIVAC-NTASALALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHHHG-GGCCSCEEECC-HHHHHHTHHHHHHHCSSCEECS
T ss_pred HHHHHH-HCCCCEEEEeC-chhhHHHHHHHHHhCCCCEEee
Confidence 333344 45899999875 4444345666667779999883
No 261
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=44.43 E-value=99 Score=30.12 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=25.8
Q ss_pred HhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEe
Q 047109 60 NLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVIS 96 (808)
Q Consensus 60 ~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is 96 (808)
+.+.+.++.+|+=+. .+..+.++..+-+..++|+|.
T Consensus 80 ~~L~~~g~d~IVIAC-NTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 80 DFFEQFQIDMLIIAC-NTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp HHHTTSCCSEEEECC-HHHHHHSHHHHHHHCSSCEEC
T ss_pred HHHHHCCCCEEEEeC-CChhHHHHHHHHHhcCCCEEc
Confidence 344456999999876 555555566777778999997
No 262
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.26 E-value=37 Score=33.20 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHH
Q 047109 134 KWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHL 210 (808)
Q Consensus 134 ~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~ 210 (808)
+-++|+++..+. .|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+.... +.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQ-RLINAFKAEAKANKYEALVATS----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHH-HHHHHHHHHHHHTTCEEEEEEC----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHH-HHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 446899988653 3444 6788889999999998876432 2244556677778877889988887544 334467
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 788888775
No 263
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.93 E-value=45 Score=32.60 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=56.3
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH----HHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA----LASH 209 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~----~~~~ 209 (808)
+.++++..+. .|-. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFP-SIIRGIESYLSEQGYSMLLTST----NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 7999998763 4555 6788999999999998876432 22444556677888788899998875432 3446
Q ss_pred HHHHHHHcCC
Q 047109 210 LFLNAKKLGM 219 (808)
Q Consensus 210 ~l~~a~~~gl 219 (808)
.++.+.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7777877775
No 264
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=43.90 E-value=1.8e+02 Score=26.17 Aligned_cols=94 Identities=9% Similarity=-0.036 Sum_probs=52.8
Q ss_pred eeecCCcHHHhhhccCCCc----ccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecccccccc
Q 047109 642 GSQLGSFVPGALSNLNFKD----SRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTTS 717 (808)
Q Consensus 642 ~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 717 (808)
....++....++.+..... ......++.....+++..|. -.+++.+............ ......... ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~~~~~~l--~~~~~~~~~-~~ 180 (219)
T 3kos_A 108 RSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTHLLSSERI--VQPFLTQID-LG 180 (219)
T ss_dssp EESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHHHHHTTSS--BCCCCCCBC-SC
T ss_pred ccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHHHHHcCCe--eccccCCcc-CC
Confidence 3344555555554433221 22356778888899998876 5566655554443322222 112222333 55
Q ss_pred ceEEEEeCCCCChHHHHHHHHhhhh
Q 047109 718 GFGFVFQKGSPLVHDISRAIAKLRE 742 (808)
Q Consensus 718 ~~~~~~~k~sp~~~~~~~~i~~l~e 742 (808)
.++++.+|+.+....+...+..+++
T Consensus 181 ~~~l~~~~~~~~~~~~~~f~~~l~~ 205 (219)
T 3kos_A 181 SYWITRLQSRPETPAMREFSRWLTG 205 (219)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred cEEEEecccccCCHHHHHHHHHHHH
Confidence 6888899987766666666665554
No 265
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=43.18 E-value=2e+02 Score=27.70 Aligned_cols=80 Identities=6% Similarity=0.049 Sum_probs=42.6
Q ss_pred hhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecc--ccccccceEEEEeCCCC-
Q 047109 652 ALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAP--NYTTTSGFGFVFQKGSP- 728 (808)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~k~sp- 728 (808)
.++.+++....+... +......++.+|+ ++++..-.+..... +. +++++.. .+.+......+++++..
T Consensus 156 ~~~~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~~--~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~ 226 (275)
T 1sw5_A 156 IKKVYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRVD--LF--NLKILEDDKGALPPYDAIIIVNGNTAK 226 (275)
T ss_dssp HHHHHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHHH--HT--TEEECBCTTCCSCCCEEEEEECTTGGG
T ss_pred HHHhcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcchh--cC--CeEEccCCcccCCccceeeeeehhhcc
Confidence 444445433334443 4557788998888 99988876655432 22 4555533 22213445556665522
Q ss_pred ChHHHHHHHHhhh
Q 047109 729 LVHDISRAIAKLR 741 (808)
Q Consensus 729 ~~~~~~~~i~~l~ 741 (808)
= ..+-+.|.++.
T Consensus 227 ~-P~~~~~l~~l~ 238 (275)
T 1sw5_A 227 D-EKLISVLKLLE 238 (275)
T ss_dssp C-HHHHHHHHTTT
T ss_pred C-hHHHHHHHHHH
Confidence 1 34555666554
No 266
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=42.52 E-value=27 Score=34.50 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=55.8
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
++++++..+. .|.. ...+.+.+.+++.|+.+..... . ..+.......++.+.+.+.|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~--~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWK-RCLKGFEDAAQALNVTVEYRGA--A-QYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHH-HHHHHHHHHHHHHTCEEEEEEC--S-SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHH-HHHHHHHHHHHHcCCEEEEeCC--C-cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 6788888653 4445 6778888999999998875322 1 2245566677777777889988887544 33456788
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 267
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=42.12 E-value=10 Score=21.80 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=14.7
Q ss_pred cchhhHHHHHHHHhhhcC
Q 047109 576 HQFGMIFWYSFSTLVFSQ 593 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~ 593 (808)
..+..++|++|+.++.++
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 467899999999998643
No 268
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=41.83 E-value=86 Score=31.05 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=70.4
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE--ecCCChhHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAII--CTEMTPTGA 80 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aii--G~~~~s~~~ 80 (808)
.|+.+|...+. .-+..++.|+.++..+ .+.+-..++.-.--+.+.-+.+.++..++.+|+ .+. ....
T Consensus 38 ~la~lF~e~ST---RTR~SFE~A~~~LGg~------~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~--~~~~ 106 (304)
T 3r7f_A 38 FAANLFFEPST---RTRFSFEVAEKKLGMN------VLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSE--DEYY 106 (304)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTCE------EEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSS--TTCH
T ss_pred EEEEEecCCCh---hHHHhHHHHHHHCCCe------EEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCC--hhHH
Confidence 36677776654 4566777777766432 233322232211112233333333332344444 332 2333
Q ss_pred HHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---Hhc---CCcEEEEEEecCCccccCcHH
Q 047109 81 HILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVF---KWKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 81 ~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~ 154 (808)
.. +++..++|+|.-+.++. . +-.+++++++ +++ ...+|+++. |..+++ ...
T Consensus 107 ~~---la~~~~vPVINagdg~~--------------~---HPtQaLaDl~Ti~e~~g~l~glkva~vG-D~~~~r--va~ 163 (304)
T 3r7f_A 107 EE---LVSQVNIPILNAGDGCG--------------Q---HPTQSLLDLMTIYEEFNTFKGLTVSIHG-DIKHSR--VAR 163 (304)
T ss_dssp HH---HHHHCSSCEEESCCTTS--------------C---CHHHHHHHHHHHHHHHSCCTTCEEEEES-CCTTCH--HHH
T ss_pred HH---HHHhCCCCEEeCCCCCC--------------c---CcHHHHHHHHHHHHHhCCCCCCEEEEEc-CCCCcc--hHH
Confidence 33 33445788887543222 2 4566777765 344 356888875 333333 677
Q ss_pred HHHHhhhcCCcEEEEE
Q 047109 155 YLFDSLHDNDIDIARR 170 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~ 170 (808)
.+...+...|..+...
T Consensus 164 Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888889887653
No 269
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=41.72 E-value=41 Score=33.69 Aligned_cols=79 Identities=10% Similarity=0.099 Sum_probs=56.2
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH-HHHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA-LASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~l~ 212 (808)
++|+++..+- .|.. ...+.+.+.+++.|+.+..... ..+...-...++.+.+.+.|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWI-DDGNNIVKQLQEAGYKTDLQYA----DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHH-HHHHHHHHHHHHcCCEEEEeeC----CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 5788988753 4555 6788899999999998776432 22444556677777777899888876543 4567788
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 270
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.68 E-value=21 Score=34.65 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=54.7
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLN 213 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~ 213 (808)
+.++++..+. .|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYA-RIAKQLEQGARARGYQLLIASS----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 5788888653 3444 6788899999999998876432 2244555667778877889998887654223456677
Q ss_pred HHHcCC
Q 047109 214 AKKLGM 219 (808)
Q Consensus 214 a~~~gl 219 (808)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777775
No 271
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=38.87 E-value=28 Score=34.46 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=47.0
Q ss_pred EeHHHHHHHHHH---C---CCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc--ceeec-cc-cc
Q 047109 447 FCVDVFKAAIDS---L---TFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS--LYVDF-TL-PY 516 (808)
Q Consensus 447 ~~~dl~~~ia~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~--~~~df-s~-p~ 516 (808)
+-.++++.+.++ . +. ++++... +...++..|.+|++|+++..-....+.. ..+.+ .. ++
T Consensus 34 ~lp~ll~~F~~~~~~~~~P~v--~v~l~~~---------~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l 102 (294)
T 3cvg_A 34 LVKELADAFIKSKVDSGSAPF--KVAWYKS---------DTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYA 102 (294)
T ss_dssp HHHHHHHHHHHHHHSCC---C--EEEEEEC---------CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEE
T ss_pred HHHHHHHHHHhhhcccCCCCe--EEEEEeC---------CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeE
Confidence 456788888888 7 65 4444443 5688999999999999876422111110 11122 24 78
Q ss_pred eeccEEEEEecCCC
Q 047109 517 TDMGIGMIVPTDRN 530 (808)
Q Consensus 517 ~~~~~~~lv~~~~~ 530 (808)
....+++++++..+
T Consensus 103 ~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 103 FRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEEECTTCT
T ss_pred EeccEEEEecCCCh
Confidence 88899999987654
No 272
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.73 E-value=57 Score=32.79 Aligned_cols=85 Identities=4% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HHhcCCcEEEEEEec----CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH
Q 047109 130 IRVFKWKHVILIYED----NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA 205 (808)
Q Consensus 130 l~~~~w~~v~ii~~d----~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 205 (808)
++.-+-+.++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.+.-...++.+.+.+.|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFS-ELLFHAARMAEEKGRQLLLADG----KHSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHH-HHHHHHHHHHHHTTCEEEEEEC----TTSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 333445689999876 23444 5778888899999998776432 22344455577777778899998876543
Q ss_pred HHHHHHHHHHHcCC
Q 047109 206 LASHLFLNAKKLGM 219 (808)
Q Consensus 206 ~~~~~l~~a~~~gl 219 (808)
....+.+.+.+.+.
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 34456666666664
No 273
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=38.57 E-value=61 Score=31.33 Aligned_cols=55 Identities=7% Similarity=-0.120 Sum_probs=33.5
Q ss_pred cCCceeeecCCcHHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEec-hhhHH
Q 047109 637 SRDNIGSQLGSFVPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDE-IPYIK 696 (808)
Q Consensus 637 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~-~~~~~ 696 (808)
++++|++...++...++-+.-....++. +-...+...++.+|+ +|+.+.- ...+.
T Consensus 95 kGk~Ia~~~~~~~~~~ll~~ll~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 95 EGLRVAVPGRHTTAYFLLSLYAQGFVPV-EVRYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp TTCEEEESCTTSHHHHHHHHHCSSCEEE-ECCGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred CCCEEEeCCCCchHHHHHHHHhccCcee-ecChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 8999999876665444322112122332 334457888898888 9998874 44444
No 274
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.48 E-value=85 Score=28.25 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=48.6
Q ss_pred cCCcEEEEEEecCC------c-cc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEc
Q 047109 133 FKWKHVILIYEDNT------W-GS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHM 202 (808)
Q Consensus 133 ~~w~~v~ii~~d~~------~-g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~ 202 (808)
+.--+++||...|+ . |+ +.....+...+++.|..+.....++. +.+.+...+.+..+. ++|+||..+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D---d~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD---DKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC---CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45568899887652 2 33 24567788889999999887776665 567788888877654 589999875
No 275
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.46 E-value=44 Score=32.61 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=52.4
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
++++++..+ +.|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+.... +.....++
T Consensus 3 ~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFV-VLAETAKQRAEQLGYEATIFDS----QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 468888865 34555 6788889999999998765322 2233445566777777788988886543 33345667
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 276
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=38.15 E-value=59 Score=31.50 Aligned_cols=72 Identities=7% Similarity=-0.115 Sum_probs=47.3
Q ss_pred eHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeeccc---cceeeccccceeccEEEE
Q 047109 448 CVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANR---SLYVDFTLPYTDMGIGMI 524 (808)
Q Consensus 448 ~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r---~~~~dfs~p~~~~~~~~l 524 (808)
.-++++.+.++.- .+++.+... .-...+.+|.+|++|+++....+++.. ...+ ...|+....++++
T Consensus 18 l~~~~~~f~~~~P-~v~i~v~~~---------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 18 VEAAGEQYTGEHL-GTFINVQGG---------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHST-TEEEEEEEE---------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHCC-CceEEEEeC---------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3467777777762 234444433 347889999999999998754443321 1122 2578899999999
Q ss_pred EecCCC
Q 047109 525 VPTDRN 530 (808)
Q Consensus 525 v~~~~~ 530 (808)
+++.++
T Consensus 87 v~~~~p 92 (264)
T 4ecf_A 87 VNKKVG 92 (264)
T ss_dssp ECTTSS
T ss_pred EcCCCc
Confidence 987654
No 277
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.95 E-value=61 Score=31.56 Aligned_cols=84 Identities=4% Similarity=-0.043 Sum_probs=51.1
Q ss_pred HHhcCCcEEEEEEec----CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH
Q 047109 130 IRVFKWKHVILIYED----NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA 205 (808)
Q Consensus 130 l~~~~w~~v~ii~~d----~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 205 (808)
++.-+-.+++++..+ +.|.. ...+.+.+.+++.|..+.... . ..+.+.....++.+.+.+.|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~---~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFS-ELLFHAARMAEEKGRQLLLAD---G-KHSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHH-HHHHHHHHHHHHTTCEEEEEC---C-TTSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHH-HHHHHHHHHHHHCCCEEEEEe---C-CCCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 333345689999865 24555 677888899999999876532 2 22344455677777777889888875432
Q ss_pred HHHHHHHHHHH-cCC
Q 047109 206 LASHLFLNAKK-LGM 219 (808)
Q Consensus 206 ~~~~~l~~a~~-~gl 219 (808)
.. ..++.+.+ .|.
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34556666 564
No 278
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=37.54 E-value=2.2e+02 Score=28.91 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=69.2
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcC-CeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNV-DLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~-~v~aiiG~~~~s~~~~ 81 (808)
.|+.+|-..+. .-+..++.|+.++..+ .+.+-..++.-.--+.+.-+.+.++.. .+.++=++. ..
T Consensus 72 ~la~lF~epST---RTR~SFE~A~~~LGg~------vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~--~~--- 137 (358)
T 4h31_A 72 NIALIFEKAST---RTRCAFEVAAFDQGAQ------VTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFG--QA--- 137 (358)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTCE------EEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSC--HH---
T ss_pred EEEEEeCCCCh---hhHHHHHHHHHHcCCe------EEECCcccccccCccchhHHHHHhhccCceeEecccc--hh---
Confidence 36777776554 4567888887776532 222222222101112222222222221 233332332 22
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---HhcCC-----cEEEEEEecCCccccCcH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVFKW-----KHVILIYEDNTWGSDNII 153 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~~w-----~~v~ii~~d~~~g~~~~~ 153 (808)
.+..++....+|+|. +-++- . +-.+++++++ +++++ .+|+++.+ - .+ ...
T Consensus 138 ~~~~la~~s~vPVIN-G~g~~--------------~---HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD-~-~~--~va 195 (358)
T 4h31_A 138 IVEELGAFAGVPVWN-GLTDE--------------F---HPTQILADFLTMLEHSQGKALADIQFAYLGD-A-RN--NVG 195 (358)
T ss_dssp HHHHHHHHSSSCEEE-SCCSS--------------C---CHHHHHHHHHHHHHTTTTCCGGGCEEEEESC-T-TS--HHH
T ss_pred HHHHhhhhccCceEC-CCCcC--------------C---CchHHHHHHHHHHHHhcCCCcCceEEEecCC-C-Cc--ccc
Confidence 334455566799988 43222 2 4567888876 34553 37777653 2 22 477
Q ss_pred HHHHHhhhcCCcEEEEE
Q 047109 154 PYLFDSLHDNDIDIARR 170 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~ 170 (808)
..+...+...|.++...
T Consensus 196 ~S~~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 196 NSLMVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHhcCceEEEe
Confidence 78888888888887654
No 279
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=37.47 E-value=2.7e+02 Score=26.35 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEE
Q 047109 452 FKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVV 497 (808)
Q Consensus 452 ~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 497 (808)
++...++.|. +++++... ++.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f~--------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEFT--------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEECS--------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEcC--------ChHHHHHHHHcCCCCEec
Confidence 4445666686 55555552 689999999999999875
No 280
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=37.32 E-value=52 Score=32.42 Aligned_cols=85 Identities=7% Similarity=0.057 Sum_probs=52.6
Q ss_pred HHHhcCCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHH
Q 047109 129 LIRVFKWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHAL 206 (808)
Q Consensus 129 ll~~~~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 206 (808)
-++.-+-+.|+++..+. .|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+......
T Consensus 9 ~L~~~~s~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 9 ALRHSRSGTIGLIVPDVNNAVFA-DMFSGVQMAASGHSTDVLLGQI----DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp --------CEEEEESCTTSTTHH-HHHHHHHHHHHHTTCCEEEEEC----CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHhhCCCCEEEEEeCCCcChHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 34444456799988653 3555 6788889999999998775432 223345566788888889999998765433
Q ss_pred HHHHHHHHHHcCC
Q 047109 207 ASHLFLNAKKLGM 219 (808)
Q Consensus 207 ~~~~l~~a~~~gl 219 (808)
....+..+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666666 65
No 281
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=36.45 E-value=38 Score=30.18 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=45.1
Q ss_pred cEEEEEEecCCc--cc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 136 KHVILIYEDNTW--GS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 136 ~~v~ii~~d~~~--g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
-+++||...|+- |+ +.....+...+++.|..+.....++. + +.+...+++..+.++|+||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D---d-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD---G-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS---S-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC---H-HHHHHHHHHHHhCCCCEEEECC
Confidence 478888766532 32 35667888889999999887666654 5 6788888776655789999864
No 282
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.16 E-value=64 Score=31.71 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=55.1
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
.+++++..+. .|.. ...+.+.+.+++.|..+..... . +.+.....++++.+.+.|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~--~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQ-TEWKFADKAGKDLGFEVIKIAV--P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHH-HHHHHHHHHHHHHTEEEEEEEC--C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHH-HHHHHHHHHHHHcCCEEEEeCC--C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 3688888653 4445 6778888999999988765432 2 44556677888877889998887654 44556778
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 283
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=35.94 E-value=1.9e+02 Score=27.50 Aligned_cols=85 Identities=16% Similarity=0.059 Sum_probs=45.2
Q ss_pred eEEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC-------CCHHHHH----HHHHHhhhcCCeEEE
Q 047109 2 VHVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSK-------GDPLHAL----TTVLNLMQNVDLQAI 70 (808)
Q Consensus 2 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~-------~~~~~a~----~~a~~li~~~~v~ai 70 (808)
.||.+|-|.++. .+-..+.-++..+.. + +.++.+...+.+ .+...+. +.+.++.. +++.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~~-p---~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~-~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVAA-P---GTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGRE-QGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHCC-T---TEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHH-HTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhcC-C---CCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHH-CCCCEE
Confidence 589999998874 333455555554431 1 256666655532 2222232 22233333 488888
Q ss_pred EecCCChhHHHHHHHhcCCCCccEEec
Q 047109 71 ICTEMTPTGAHILAEIGSKAKIPVISL 97 (808)
Q Consensus 71 iG~~~~s~~~~~~~~~~~~~~iP~is~ 97 (808)
+=.. .+..+. ..+-+..++|++..
T Consensus 74 viaC-nt~~~l--~~lr~~~~iPvigi 97 (245)
T 3qvl_A 74 VIAS-FGDPGL--LAARELAQGPVIGI 97 (245)
T ss_dssp EEC--CCCTTH--HHHHHHCSSCEEEH
T ss_pred EEeC-CChhHH--HHHHHHcCCCEECc
Confidence 8655 433332 34444568998873
No 284
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=35.81 E-value=72 Score=28.96 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=47.3
Q ss_pred CcEEEEEEecCCc--c-ccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 135 WKHVILIYEDNTW--G-SDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 135 w~~v~ii~~d~~~--g-~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
--+++||...|+- | .+.....+...+++.|..+.....++. +.+.+...+++..+.++|+||..+
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D---d~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA---DEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS---CHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC---CHHHHHHHHHHHHhCCCCEEEECC
Confidence 3478888865531 2 225678888899999999888777765 566788888776545789998864
No 285
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=35.23 E-value=66 Score=31.62 Aligned_cols=79 Identities=8% Similarity=0.105 Sum_probs=52.5
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCc-EEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH-HHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDI-DIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA-LASHLF 211 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~l 211 (808)
++++++..+ +.|.. ...+.+.+.+++.|. .+..... ..+.......++.+.+.+.|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMS-VVRKAIEQDAKAAPDVQLLMNDS----QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHH-HHHHHHHHHHHTCTTEEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHH-HHHHHHHHHHHhcCCeEEEEecC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 468888764 34555 678888999999997 7665321 22344455667777778899888865443 345667
Q ss_pred HHHHHcCC
Q 047109 212 LNAKKLGM 219 (808)
Q Consensus 212 ~~a~~~gl 219 (808)
+.+.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 286
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=35.15 E-value=38 Score=33.17 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHhhhcC--ccccccchhhHHHHHHHHHHHHHHHHhhhhhheee
Q 047109 576 HQFGMIFWYSFSTLVFSQ--REKLLSNWSKFVVIVWVFVVLILTSSYTATLTSML 628 (808)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~--~~~p~s~s~Ril~~~w~~~~lil~~~Y~a~L~s~l 628 (808)
-++.+++|++..++.--| ...|.+..+|++.+++.++++.+...+.+++...+
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998765 45799999999999999999999999998886544
No 287
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.94 E-value=47 Score=32.43 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=53.6
Q ss_pred cCCcEEEEEEec-------CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH
Q 047109 133 FKWKHVILIYED-------NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA 205 (808)
Q Consensus 133 ~~w~~v~ii~~d-------~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 205 (808)
-+-+.|+++..+ +.|.. ...+.+.+.+++.|..+... .. ..+.+.....++.+.+.+.|.||+.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~---~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFP-EVIRGISSFAHVEGYALYMS---TG-ETEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHH-HHHHHHHHHHHHTTCEEEEC---CC-CSHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CCCCEEEEEecCCccccccCHHHH-HHHHHHHHHHHHcCCEEEEE---eC-CCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 345688998876 24445 67788889999999887642 22 22333456677778888899988865433
Q ss_pred HHHHHHHHHHHcCC
Q 047109 206 LASHLFLNAKKLGM 219 (808)
Q Consensus 206 ~~~~~l~~a~~~gl 219 (808)
. ...++.+.+.|+
T Consensus 81 ~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 81 N-DRIIQYLHEQNF 93 (292)
T ss_dssp T-CHHHHHHHHTTC
T ss_pred C-hHHHHHHHHCCC
Confidence 2 246677777775
No 288
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=34.90 E-value=95 Score=27.83 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred EEEEEEecCC-------ccc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhc-CCCCeEEEEEc
Q 047109 137 HVILIYEDNT-------WGS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLK-SSETKVFVVHM 202 (808)
Q Consensus 137 ~v~ii~~d~~-------~g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~ 202 (808)
+++||.-.|. .|. +.....+.+.+.+.|+.+.....++. +.+.+...+.... ..++|+|+..+
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~D---d~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD---DKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCC---CHHHHHHHHHHHHhcCCCCEEEecC
Confidence 7888875441 111 13456788999999999988777765 5567777776654 45789999865
No 289
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=34.84 E-value=88 Score=30.26 Aligned_cols=70 Identities=9% Similarity=-0.081 Sum_probs=44.9
Q ss_pred HHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeec-c--ccceeeccccceeccEEEE
Q 047109 449 VDVFKAAIDSL-TFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITA-N--RSLYVDFTLPYTDMGIGMI 524 (808)
Q Consensus 449 ~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~--r~~~~dfs~p~~~~~~~~l 524 (808)
-.+++.+.++. +.+ +.+... .-...+..|.+|++|+++....... + ....+ ...|+....++++
T Consensus 19 ~~~~~~F~~~~P~v~--i~v~~~---------gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvv 86 (265)
T 4exl_A 19 EVAADEFGTIHVGKT--VNVQGG---------GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALI 86 (265)
T ss_dssp HHHHHHHHHHSTTCE--EEEEEE---------CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCce--EEEeeC---------CcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEE
Confidence 45666777766 554 444433 3478899999999999876433221 0 11122 2568889999999
Q ss_pred EecCCC
Q 047109 525 VPTDRN 530 (808)
Q Consensus 525 v~~~~~ 530 (808)
+++.++
T Consensus 87 v~~~~~ 92 (265)
T 4exl_A 87 VNKEVD 92 (265)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 987654
No 290
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=34.58 E-value=57 Score=32.02 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=52.4
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
.+++++..+ +.|.. ...+.+.+.+++.|+.+.... +. ..+.......++++.+.+.|.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~~--~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFN-RMGEGVVQAGKEFNLNASQVG--PS-STDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHH-HHHHHHHHHHHHTTEEEEEEC--CS-SSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHH-HHHHHHHHHHHHcCCEEEEEC--CC-CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 468888754 34555 677888899999998875321 11 2234445566777777788988886543 33446677
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777764
No 291
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=34.15 E-value=40 Score=33.03 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=52.0
Q ss_pred HHhcCCcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHH
Q 047109 130 IRVFKWKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALA 207 (808)
Q Consensus 130 l~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 207 (808)
++.-+-..++++..+ +.|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYT-RIANYLERQARQRGYQLLIACS----EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHH-HHHHHHHHHHHHCCCEEEEEcC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 344445689999864 33444 6778888899999998775321 2233445566777777889988886543222
Q ss_pred HHHHHHHHHcCC
Q 047109 208 SHLFLNAKKLGM 219 (808)
Q Consensus 208 ~~~l~~a~~~gl 219 (808)
..+++.+.+.|.
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 234555555553
No 292
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=33.65 E-value=58 Score=29.02 Aligned_cols=63 Identities=14% Similarity=0.287 Sum_probs=41.8
Q ss_pred EEEEEEecCCc--cc--cCcHHHHHHh----hhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 137 HVILIYEDNTW--GS--DNIIPYLFDS----LHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 137 ~v~ii~~d~~~--g~--~~~~~~~~~~----~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
+++||...|+- |+ +.....+.+. +++.|+.+.....++. +.+.+...+++..+.++|+||..+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D---d~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE---GYDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS---SHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC---CHHHHHHHHHHHHhCCCCEEEECC
Confidence 67777755532 21 2456778888 8899998887766665 567788888877654689998864
No 293
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=33.59 E-value=81 Score=31.62 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=51.1
Q ss_pred cEEEEEEec---CCccccCcHHHHHHhhhcCCcEEEEEEecCCCC--CChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHH
Q 047109 136 KHVILIYED---NTWGSDNIIPYLFDSLHDNDIDIARRITISMSS--NTDDQVIEKLSMLKSSETKVFVVHMSHALASHL 210 (808)
Q Consensus 136 ~~v~ii~~d---~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~ 210 (808)
..++++..+ +.|-. ...+.+.+.+++.|..+..... .. . .+...-...++.+.+.+.|.||+..........
T Consensus 44 ~~Igvi~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 120 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWV-RNIASFEKRLYKLNINYQLNQV-FT-RPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF 120 (342)
T ss_dssp EEEEEEECCCSSCCHHH-HHHHHHHHHHHHTTCCEEEEEE-EC-CTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHH
T ss_pred eEEEEEecCCcccHHHH-HHHHHHHHHHHHcCCeEEEEec-CC-CCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHH
Confidence 478888865 34544 6778888999999987654321 11 1 133444566777777789998884433323455
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|.
T Consensus 121 ~~~~~~~~i 129 (342)
T 1jx6_A 121 VEHVLDSTN 129 (342)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHcCC
Confidence 666766664
No 294
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=33.20 E-value=2.9e+02 Score=27.45 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
.|+.+|...+. .-+..++.|+.++..+ .+.+-..++.-.--+.+.-+.+.++.. +.+|+--......
T Consensus 50 ~la~lF~e~ST---RTR~SFE~A~~~LGg~------~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~~~~--- 116 (323)
T 3gd5_A 50 VLGLVFLKAST---RTRVSFTVAMYQLGGQ------VIDLSPSNTQVGRGEPVRDTARVLGRY-VDGLAIRTFAQTE--- 116 (323)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHTTCE------EEEC----------CCHHHHHHHHTTT-CSEEEEECSSHHH---
T ss_pred EEEEEecCCCc---chHhhHHHHHHHcCCe------EEEeCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCChhH---
Confidence 46777776664 4567888888777543 222222222111112333333444442 4444432102222
Q ss_pred HHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---Hhc---CCcEEEEEEecCCccccCcHHHH
Q 047109 83 LAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVF---KWKHVILIYEDNTWGSDNIIPYL 156 (808)
Q Consensus 83 ~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~~~ 156 (808)
+..++...+||+|.-+. + . . +-.+++++++ +++ ...+|+++.+- + .....+
T Consensus 117 ~~~lA~~~~vPVINag~-~-~-------------~---HPtQaLaDl~Ti~e~~g~l~glkva~vGD~---~--rva~Sl 173 (323)
T 3gd5_A 117 LEEYAHYAGIPVINALT-D-H-------------E---HPCQVVADLLTIRENFGRLAGLKLAYVGDG---N--NVAHSL 173 (323)
T ss_dssp HHHHHHHHCSCEEEEEC-S-S-------------C---CHHHHHHHHHHHHHHHSCCTTCEEEEESCC---C--HHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-C-------------C---CcHHHHHHHHHHHHHhCCCCCCEEEEECCC---C--cHHHHH
Confidence 33444555789888553 2 2 3 5567777765 344 35688887532 3 477777
Q ss_pred HHhhhcCCcEEEEE
Q 047109 157 FDSLHDNDIDIARR 170 (808)
Q Consensus 157 ~~~~~~~g~~i~~~ 170 (808)
...+...|.++...
T Consensus 174 ~~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 174 LLGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 77888888887654
No 295
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=33.11 E-value=72 Score=33.78 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.++++.+|.+++.++++...+. ...+.+.+.+++.|+.+.+. .+.. ....+......+.+++ ++|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~--~~~~~v~~~L~~~gi~~~~~-~~~g-e~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN--ICANKIVDSLSQNGMTVTKL-VFGG-EASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH--HTHHHHHHHHHHTTCEEEEE-EECS-CCCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH--HHHHHHHHHHHHCCCeEEEE-eeCC-CCCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 456677777866999998665432 36788889999999887432 2332 3345567777777777 89999977655
Q ss_pred H
Q 047109 205 A 205 (808)
Q Consensus 205 ~ 205 (808)
.
T Consensus 156 S 156 (450)
T 1ta9_A 156 K 156 (450)
T ss_dssp H
T ss_pred H
Confidence 3
No 296
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=33.09 E-value=1.3e+02 Score=30.65 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccc---cccccceEEEEeC----CCC-ChHH----HHHHHHh
Q 047109 672 FANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPN---YTTTSGFGFVFQK----GSP-LVHD----ISRAIAK 739 (808)
Q Consensus 672 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~k----~sp-~~~~----~~~~i~~ 739 (808)
...+|.+|+ +|+++............ ..+++... ........+++++ ..| ..+. +.++..+
T Consensus 210 ~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~ 282 (365)
T 2de3_A 210 QAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLW 282 (365)
T ss_dssp HHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 578898888 99999887665544332 34444321 1102234566663 355 4444 5555566
Q ss_pred hhhcC-chHHHHHHhcC
Q 047109 740 LREEG-TLRKIEIEWFN 755 (808)
Q Consensus 740 l~e~G-~~~~~~~~~~~ 755 (808)
+.++. ...++..+++.
T Consensus 283 ~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 283 ARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHHCHHHHHHHHHHHhC
Confidence 66552 33344445543
No 297
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.30 E-value=32 Score=34.42 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=52.9
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHH-HHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHAL-ASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~l~ 212 (808)
++|+++..+ +.|.. ...+.+.+.+++.|+.+.... +. ..+...-..+++++.+.+.|.|++...... ....++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~~--~~-~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFT-SGGNGAQEAGKALGIDVTYDG--PT-EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHH-HHHHHHHHHHHHHTCEEEECC--CS-SCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHH-HHHHHHHHHHHHhCCEEEEEC--CC-CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 578888754 34555 567888888888998876421 12 224445556777777788999888654433 356778
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8888774
No 298
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=31.79 E-value=94 Score=30.90 Aligned_cols=81 Identities=7% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCcEEEEEEecC-CccccCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHH-HHHH
Q 047109 134 KWKHVILIYEDN-TWGSDNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHAL-ASHL 210 (808)
Q Consensus 134 ~w~~v~ii~~d~-~~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~ 210 (808)
+-..|+++..++ .|.. ...+.+.+.+++. |+.+..... ..+.......++.+.+.+.|.||+...... ....
T Consensus 5 ~~~~Igvi~~~~~~~~~-~~~~gi~~~a~~~~g~~l~i~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 79 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRH-KMNDEILREAMFYNGVSVEIRSA----GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPI 79 (325)
T ss_dssp -CCEEEEEESCCSHHHH-HHHHHHHHHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCeEEEEEecCCCHHHH-HHHHHHHHHHHHcCCcEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH
Confidence 345788887652 2333 4667788888888 988765422 223444556677777788998888754433 3456
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|+
T Consensus 80 ~~~~~~~~i 88 (325)
T 2x7x_A 80 VEEAYQKGI 88 (325)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 777777664
No 299
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=31.68 E-value=56 Score=32.47 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHhhhcC--ccccccchhh------HHHHHHHHHHHHHHHHhhhhhheeee
Q 047109 577 QFGMIFWYSFSTLVFSQ--REKLLSNWSK------FVVIVWVFVVLILTSSYTATLTSMLT 629 (808)
Q Consensus 577 ~~~~~~~~~~~~l~~~~--~~~p~s~s~R------il~~~w~~~~lil~~~Y~a~L~s~lt 629 (808)
++.+++|+++.++.--+ ...|.+..+| ++..+|+++++.+.++-.+.+.+++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999998888655 3356665555 69999999999999988887766553
No 300
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=31.68 E-value=2.3e+02 Score=27.51 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
...+++.....|-..+.++.+...|+ +..+.+...-+..++.|.....+ . +.. ++...+..++|.|++.+
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~--Gs~~~L~~ir~~v~lPVl~Kdfi-~---d~~----qi~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQ--GAPEFLTAARQACSLPALRKDFL-F---DPY----QVYEARSWGADCILIIM 150 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTC--CCHHHHHHHHHTSSSCEEEESCC-C---STH----HHHHHHHTTCSEEEEET
T ss_pred HHHHHHHHHHCCCCEEEEeccccccC--CCHHHHHHHHHhcCCCEEECCcc-C---CHH----HHHHHHHcCCCEEEEcc
Confidence 34677777888999999988555443 45566665555567777654332 2 211 45566778999999975
Q ss_pred ---CHHHHHHHHHHHHHcCC
Q 047109 203 ---SHALASHLFLNAKKLGM 219 (808)
Q Consensus 203 ---~~~~~~~~l~~a~~~gl 219 (808)
+.++...++..++++||
T Consensus 151 a~L~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 151 ASVDDDLAKELEDTAFALGM 170 (272)
T ss_dssp TTSCHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 45678899999999997
No 301
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=31.59 E-value=2.8e+02 Score=27.29 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=55.5
Q ss_pred cCCceeeecCCcHHHhhhccCCCcccccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEeccccccc
Q 047109 637 SRDNIGSQLGSFVPGALSNLNFKDSRLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAPNYTTT 716 (808)
Q Consensus 637 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 716 (808)
.+++|++..-.....||.+.+....-+..+.+.+-. -..|- .|+++.--.+..-+-++ +|+.+... . .
T Consensus 123 ~g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~Gl----ADaIvDivsTG~TLraN---gL~~ie~I-~-~ 190 (299)
T 1h3d_A 123 NGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGL----ADAICDLVSTGATLEAN---GLREVEVI-Y-R 190 (299)
T ss_dssp TTCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTS----CSEEEEEESSCHHHHHT---TEEEEEEE-E-E
T ss_pred CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----cceEEecccCHHHHHHC---CCEEeEEE-E-e
Confidence 577888776666678887666643333344444432 22344 66666544444443333 57777444 4 5
Q ss_pred cceEEEEeCCC--CC-hHHHHHHHHhhhh
Q 047109 717 SGFGFVFQKGS--PL-VHDISRAIAKLRE 742 (808)
Q Consensus 717 ~~~~~~~~k~s--p~-~~~~~~~i~~l~e 742 (808)
+...+..+|.+ +. .+.++..+.+|+.
T Consensus 191 SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 191 SKACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp ECEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 66777788886 22 2567888888874
No 302
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.93 E-value=1.2e+02 Score=30.51 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=53.5
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLN 213 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~ 213 (808)
+.++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.+.....++.+.+.+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFP-EVLTGINQVLEDTELQPVVGVT----DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHH-HHHHHHHHHHTSSSSEEEEEEC----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 479998865 34445 6788899999999999865322 2244455667788888889998887644322 55666
Q ss_pred HHHcCC
Q 047109 214 AKKLGM 219 (808)
Q Consensus 214 a~~~gl 219 (808)
+.+.|+
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777774
No 303
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=30.86 E-value=76 Score=28.41 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=38.5
Q ss_pred EEEEEEecCC--ccc--cCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 137 HVILIYEDNT--WGS--DNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 137 ~v~ii~~d~~--~g~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
+++||...|+ .|+ +.....+...+.+.|+.+.....++. +.+.+...+++..+ ++|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D---d~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD---DLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC---CHHHHHHHHHHHHh-cCCEEEEcC
Confidence 5666665443 132 24556777778888888777666654 55667766666543 367777754
No 304
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.86 E-value=68 Score=31.30 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=51.5
Q ss_pred CcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHH
Q 047109 135 WKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFL 212 (808)
Q Consensus 135 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~ 212 (808)
-+.++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.+.....++.+.+.+.|.||+...... ...++
T Consensus 16 s~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 89 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYS-ELARGIEDIATMYKYNIILSNS----DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVA 89 (289)
T ss_dssp CCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHH
T ss_pred CCeEEEEeCCCCCchHH-HHHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHH
Confidence 3588998865 34444 6778888999999998765321 223444556777777788998888653222 23455
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 90 ~l~~~~i 96 (289)
T 2fep_A 90 EFKRSPV 96 (289)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 6666664
No 305
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=30.70 E-value=2e+02 Score=28.18 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=42.2
Q ss_pred EEEecCCCCHHHHHHHHHH-hhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEE
Q 047109 42 LHSRDSKGDPLHALTTVLN-LMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVI 95 (808)
Q Consensus 42 ~~~~d~~~~~~~a~~~a~~-li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~i 95 (808)
+...||=|++..-.+.+.+ |..+-.+..|||+. .|+.+..+..+|...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~-nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGK-NSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCT-TCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCC-CCchhHHHHHHHHhcCCCEE
Confidence 3467888898887765554 55556788889999 99999999999998887743
No 306
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.64 E-value=39 Score=33.38 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHhcCCcEEEEEEec-------CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEE
Q 047109 128 DLIRVFKWKHVILIYED-------NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVV 200 (808)
Q Consensus 128 ~ll~~~~w~~v~ii~~d-------~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 200 (808)
+-++.-+-+.++++..+ +.|.. ...+.+.+.+++.|..+... .. ..+.......++.+.+.+.|.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~---~~-~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNS-DVLNGINQACNVRGYSTRMT---VS-ENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHH-HHHHHHHHHHHHHTCEEEEC---CC-SSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHH-HHHHHHHHHHHHCCCEEEEE---eC-CCChHHHHHHHHHHHhCCCCEEEE
Confidence 33444456789999876 23444 67788888999999987652 22 222334456777788888999888
Q ss_pred EcCHHHHHHHHHHHHHcCC
Q 047109 201 HMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 201 ~~~~~~~~~~l~~a~~~gl 219 (808)
...... ...++.+.+.|+
T Consensus 90 ~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SSCBTT-CHHHHHHHHTTC
T ss_pred eCCcCC-cHHHHHHHHcCC
Confidence 754332 245666777775
No 307
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=30.62 E-value=3.4e+02 Score=26.78 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=70.9
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcC-CeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNV-DLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~-~v~aiiG~~~~s~~~~ 81 (808)
.|+.+|...+. .-+..++.|+.++..+ .+.+-..++.-.--+++.-+.+.++.. .+.++=.+. ..
T Consensus 38 ~la~lF~e~ST---RTR~SFe~A~~~LGg~------~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~--~~--- 103 (307)
T 3tpf_A 38 TLAMIFEKNST---RTRMAFELAITELGGK------ALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK--HE--- 103 (307)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHTTCE------EEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC--HH---
T ss_pred EEEEEecCCCc---chHHhHHHHHHHcCCe------EEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hH---
Confidence 46778877664 4577888888777542 222222222211111222222222221 233332333 22
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---HhcC----CcEEEEEEecCCccccCcHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVFK----WKHVILIYEDNTWGSDNIIP 154 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~~----w~~v~ii~~d~~~g~~~~~~ 154 (808)
.+..++...++|+|.-+. + . . +-.+++++++ +++| -.+++++.+ +. ....
T Consensus 104 ~~~~lA~~~~vPVINag~-~-~-------------~---HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~-~va~ 160 (307)
T 3tpf_A 104 TLLEFARYSKAPVINALS-E-L-------------Y---HPTQVLGDLFTIKEWNKMQNGIAKVAFIGD----SN-NMCN 160 (307)
T ss_dssp HHHHHHHHCSSCEEEEEC-S-S-------------C---CHHHHHHHHHHHHHTTCCGGGCCEEEEESC----SS-HHHH
T ss_pred HHHHHHHhCCCCEEeCCC-C-C-------------c---CcHHHHHHHHHHHHHhCCCCCCCEEEEEcC----CC-ccHH
Confidence 333455566899998653 2 2 3 5567788875 3454 347888763 23 5778
Q ss_pred HHHHhhhcCCcEEEEE
Q 047109 155 YLFDSLHDNDIDIARR 170 (808)
Q Consensus 155 ~~~~~~~~~g~~i~~~ 170 (808)
.+...+...|.++...
T Consensus 161 Sl~~~~~~~G~~v~~~ 176 (307)
T 3tpf_A 161 SWLITAAILGFEISIA 176 (307)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888888887653
No 308
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=30.10 E-value=61 Score=33.16 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
..+.+.++.+|.+++.++++.... ...+.+.+.+++.++.+ +. .+.. .++.+.....++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~---~~~~~v~~~L~~~~~~~-f~-~v~~-~p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ---AEAERIADLLGPLSAGV-YA-GAVM-HVPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH---HHHHHHHHHHGGGEEEE-EC-CCCT-TCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH---HHHHHHHHHhccCCEEE-ec-CCcC-CCCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 456778888999999999866542 45677888888765432 22 2222 335567777888888889999888876
Q ss_pred HH
Q 047109 204 HA 205 (808)
Q Consensus 204 ~~ 205 (808)
+.
T Consensus 99 Gs 100 (358)
T 3jzd_A 99 GS 100 (358)
T ss_dssp HH
T ss_pred cH
Confidence 64
No 309
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.06 E-value=37 Score=33.42 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=55.2
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
.+++++..+ +.|.. ...+.+.+.+++.|+.+..... .. ..+.......++++.+.+.|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWT-SLFQGAKKAAEELKVDLQILAP-PG-ANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHH-HHHHHHHHHHHHHTCEEEEECC-SS-SCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHH-HHHHHHHHHHHHhCcEEEEECC-CC-cCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467888765 34555 6788889999999999875432 10 0244556677888887889988886543 33456778
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8888775
No 310
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=29.85 E-value=2.4e+02 Score=26.91 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=43.2
Q ss_pred cccccCCHHHHHHHHhcCCCCCceEEEEechhhHHHHHhcCCCceEEecc--ccccccceEEEEeCCCCChHHHHHHHHh
Q 047109 662 RLKKYNSAEEFANALSKGSKNGGISAIIDEIPYIKAFLAKYSTDYTMIAP--NYTTTSGFGFVFQKGSPLVHDISRAIAK 739 (808)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~k~sp~~~~~~~~i~~ 739 (808)
.....++.......+..|. -.+++.+.. ........ .+..+.. ... ...++++.+++.+....+...+..
T Consensus 215 ~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~-~~~~~~~~--~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~f~~~ 286 (300)
T 3mz1_A 215 YTMAANESTTYLAAARAGL----GVIQAPLFM-VREDLRNG--TMVPVLPDWQVE-PMPIYLVYPPNRHLSSRLRVFADW 286 (300)
T ss_dssp EEEEESSHHHHHHHHHTTC----CBEEEEHHH-HHHHHHHT--SEEECCTTCBCC-CEEEEEEECTTCCCCHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHhCC----CEEeccHHH-HHHHHhCC--CeEEeCCCcCCC-CccEEEEEcCcccCcHHHHHHHHH
Confidence 3456778888889988776 445554443 33333322 3443322 233 667888888887666666666655
Q ss_pred hhh
Q 047109 740 LRE 742 (808)
Q Consensus 740 l~e 742 (808)
+++
T Consensus 287 l~~ 289 (300)
T 3mz1_A 287 VVK 289 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 311
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=29.79 E-value=4.5e+02 Score=26.53 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=70.2
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAHI 82 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~~ 82 (808)
.|+.+|...+. .-+..++.|+.++..+ .+.+-..++.-.--+.+.-+.+.++.. +.+|+--..... .
T Consensus 43 ~la~lF~epST---RTR~SFE~A~~~LGg~------vi~l~~~~ssl~kgEsl~DTarvLs~y-~D~IviR~~~~~---~ 109 (355)
T 4a8p_A 43 SLGMIFQQSST---RTRVSFETAMEQLGGH------GEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVERHH---S 109 (355)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTCE------EEEECBTTBCBTTTBCHHHHHHHHTTT-CSEEEEECSSHH---H
T ss_pred EEEEEecCCCh---hhHhhHHHHHHHcCCe------EEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecCcHH---H
Confidence 36667766554 3466777777766432 222222222211122333333444432 444432210222 2
Q ss_pred HHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---Hhc--C----CcEEEEEEecCCccccCcH
Q 047109 83 LAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVF--K----WKHVILIYEDNTWGSDNII 153 (808)
Q Consensus 83 ~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~--~----w~~v~ii~~d~~~g~~~~~ 153 (808)
+..++...+||+|.-+. + . . +-.+++++++ +++ | ..+|+++.+ . + ...
T Consensus 110 ~~~lA~~~~vPVINag~-~-~-------------~---HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD-~--~--rva 166 (355)
T 4a8p_A 110 IVDLANCATIPVINGMS-D-Y-------------N---HPTQELGDLCTMVEHLPEGKKLEDCKVVFVGD-A--T--QVC 166 (355)
T ss_dssp HHHHHHHCSSCEEECCC-S-S-------------C---CHHHHHHHHHHHHHTCCTTCCGGGCEEEEESC-C--C--HHH
T ss_pred HHHHHHhCCCCEEeCCC-C-C-------------C---CcHHHHHHHHHHHHHhhcCCCCCCCEEEEECC-C--c--hhH
Confidence 33444556788888542 2 2 3 5567788865 456 5 247887753 2 3 477
Q ss_pred HHHHHhhhcCCcEEEEE
Q 047109 154 PYLFDSLHDNDIDIARR 170 (808)
Q Consensus 154 ~~~~~~~~~~g~~i~~~ 170 (808)
..+...+...|.++...
T Consensus 167 ~Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 167 FSLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 88888888889887654
No 312
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.79 E-value=3.7e+02 Score=26.53 Aligned_cols=115 Identities=12% Similarity=-0.010 Sum_probs=63.4
Q ss_pred EEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHHH
Q 047109 3 HVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~~ 81 (808)
+||.+....+. ....-..|++-|+++.+- + .+......+...+.+++.+++....+.||+... +. .+.
T Consensus 176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-------~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~n-d~-~A~ 244 (333)
T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIYGA-------E--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVAS-PR-LMA 244 (333)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTC-------E--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECC-HH-HHH
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHCCC-------C--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECC-HH-HHH
Confidence 57777665433 244556788877776532 2 222214567888889999998875589999865 43 333
Q ss_pred HHHHhcCC--CCcc----EEeccCCCCccccc-ceeeeccCCchhhHHHHHHHHHHH
Q 047109 82 ILAEIGSK--AKIP----VISLYATLPSSLTS-YSIQIDQDDEASQSQAKGIADLIR 131 (808)
Q Consensus 82 ~~~~~~~~--~~iP----~is~~~~~~~~ls~-~~~r~~p~~~~~~~~~~a~~~ll~ 131 (808)
.+...+.. .+|| ++++.......+.. .+..+..+.. .+++..++++.
T Consensus 245 g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~~~~---~~g~~Av~~L~ 298 (333)
T 3jvd_A 245 GVMRAFTRLNVRVPHDVVIGGYDDPEWYSFVGAGITTFVPPHE---EMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEESCCGGGGGSTTSCEEEECCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECChHHHHhcCCCceEEecCHH---HHHHHHHHHHH
Confidence 33333332 3344 66664322110111 2333344444 66777666653
No 313
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=29.47 E-value=85 Score=31.96 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
..+.+.++.+|.+++.++++.... ...+.+.+.+++.++.+ +. .+.. ..+.+.....++.+++.++|+||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~---~~~~~v~~~L~~~~~~v-~~-~v~~-~p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK---GDAEALASRLGRLAAGV-FS-EAAM-HTPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH---HHHHHHHHHHGGGEEEE-EC-CCCT-TCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh---hHHHHHHHHHhhCCcEE-ec-CcCC-CCcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 356778888999999999865532 45678888888765433 22 2222 335567788888888889999988876
Q ss_pred HH
Q 047109 204 HA 205 (808)
Q Consensus 204 ~~ 205 (808)
+.
T Consensus 97 Gs 98 (353)
T 3hl0_A 97 GS 98 (353)
T ss_dssp HH
T ss_pred cH
Confidence 64
No 314
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=29.45 E-value=1e+02 Score=30.03 Aligned_cols=81 Identities=4% Similarity=0.051 Sum_probs=50.0
Q ss_pred HHhcCCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHH
Q 047109 130 IRVFKWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALA 207 (808)
Q Consensus 130 l~~~~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 207 (808)
++.-+-+.|+++. +. .|-. ...+.+.+.+++.|..+.....- . +.. -...++.+.+.+.|.||+.......
T Consensus 7 L~~~~~~~Igvi~-~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~-~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 7 LRQASSRLLGVVF-ELQQPFHG-DLVEQIYAAATRRGYDVMLSAVA-P---SRA-EKVAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp ------CEEEEEE-ETTCHHHH-HHHHHHHHHHHHTTCEEEEEEEB-T---TBC-HHHHHHHHTTTTEEEEEEETCCCCH
T ss_pred hhcCCCCEEEEEE-ecCCchHH-HHHHHHHHHHHHCCCEEEEEeCC-C---CHH-HHHHHHHHHhCCCCEEEEECCCCCH
Confidence 4444456888888 43 3444 57788889999999988765432 1 222 4567777877889999988654333
Q ss_pred HHHHHHHHHcCC
Q 047109 208 SHLFLNAKKLGM 219 (808)
Q Consensus 208 ~~~l~~a~~~gl 219 (808)
..++.+.+ |+
T Consensus 80 -~~~~~~~~-~i 89 (289)
T 3k9c_A 80 -DELGALAD-RV 89 (289)
T ss_dssp -HHHHHHHT-TS
T ss_pred -HHHHHHHc-CC
Confidence 45555554 64
No 315
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.15 E-value=1e+02 Score=25.11 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=38.9
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS--HALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~l~~a~~~g 218 (808)
...+.+.+.+++.|..+... . +. ...+..+.+..+++|++... ..+...++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~----~~---~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M----SG---TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S----SH---HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCCEEEE---C----CH---HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 45678888888888765431 1 22 33444455567999999754 445778888888863
No 316
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=29.11 E-value=4.5e+02 Score=26.33 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=69.5
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCC---CCHH-HHHHHHHHhhhcCCeEEEEecCCChh
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSK---GDPL-HALTTVLNLMQNVDLQAIICTEMTPT 78 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~---~~~~-~a~~~a~~li~~~~v~aiiG~~~~s~ 78 (808)
.|+.+|...+. .-+..++.|+.++..+ .+.+-..++. +.+. .+++....+ . .+.++=++. ..
T Consensus 65 ~la~lF~e~ST---RTR~SFE~A~~~LGg~------~i~l~~~~ssl~kgEsl~DTarvLs~~-~--D~IviR~~~--~~ 130 (339)
T 4a8t_A 65 SLGMIFQQSST---RTRVSFETAMEQLGGH------GEYLAPGQIQLGGHETIEDTSRVLSRL-V--DILMARVER--HH 130 (339)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTCE------EEEECCC-CCSSSSSCHHHHHHHHHHH-C--SEEEEECSS--HH
T ss_pred eEEEEecCCCc---hHHHHHHHHHHHcCCe------EEEeCcccccCCCCcCHHHHHHHHHHh-C--CEEEEecCc--HH
Confidence 46777776664 4567888887776442 2222222221 2222 222222222 1 233333332 23
Q ss_pred HHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---Hhc--C----CcEEEEEEecCCccc
Q 047109 79 GAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVF--K----WKHVILIYEDNTWGS 149 (808)
Q Consensus 79 ~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~--~----w~~v~ii~~d~~~g~ 149 (808)
.+..++...+||+|.-+. + . . +-.+++++++ +++ | ..+|+++.+ . +
T Consensus 131 ---~~~~lA~~~~vPVINag~-~-~-------------~---HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD-~--~- 185 (339)
T 4a8t_A 131 ---SIVDLANCATIPVINGMS-D-Y-------------N---HPTQELGDLCTMVEHLPEGKKLEDCKVVFVGD-A--T- 185 (339)
T ss_dssp ---HHHHHHHHCSSCEEECCC-S-S-------------C---CHHHHHHHHHHHHHTCCTTCCGGGCEEEEESS-C--C-
T ss_pred ---HHHHHHHhCCCCEEECCC-C-C-------------c---CcHHHHHHHHHHHHHhhcCCCCCCCEEEEECC-C--c-
Confidence 333445556899988542 2 2 3 5567788765 456 5 247887753 2 3
Q ss_pred cCcHHHHHHhhhcCCcEEEEE
Q 047109 150 DNIIPYLFDSLHDNDIDIARR 170 (808)
Q Consensus 150 ~~~~~~~~~~~~~~g~~i~~~ 170 (808)
.....+...+...|.++...
T Consensus 186 -rva~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 186 -QVCFSLGLITTKMGMNFVHF 205 (339)
T ss_dssp -HHHHHHHHHHHHTTCEEEEE
T ss_pred -hhHHHHHHHHHHcCCEEEEE
Confidence 47788888888889887654
No 317
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.04 E-value=2.4e+02 Score=23.16 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=37.7
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHHc
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKKL 217 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~~ 217 (808)
...+.+...++..|..+.. .. +. ...+..+++..+|+|++.... .+...++++.++.
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~----~~---~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---AD----SG---GQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES----SH---HHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCeEEEE---eC----CH---HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4667888888888877542 11 22 344455556679999997543 3567888888873
No 318
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=29.01 E-value=4.3e+02 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHH---HhcC---CcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEE
Q 047109 121 SQAKGIADLI---RVFK---WKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARR 170 (808)
Q Consensus 121 ~~~~a~~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~ 170 (808)
+-.+++++++ +++| -.+++++. |..+++ ....+...+...|.++...
T Consensus 135 HPtQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~r--va~Sl~~~~~~~G~~v~~~ 187 (308)
T 1ml4_A 135 HPTQTLLDLYTIKKEFGRIDGLKIGLLG-DLKYGR--TVHSLAEALTFYDVELYLI 187 (308)
T ss_dssp CHHHHHHHHHHHHHHSSCSSSEEEEEES-CTTTCH--HHHHHHHHGGGSCEEEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCeEEEEeC-CCCcCc--hHHHHHHHHHHCCCEEEEE
Confidence 5567888876 4555 24777765 333444 7788888888889887654
No 319
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=28.93 E-value=55 Score=31.23 Aligned_cols=74 Identities=8% Similarity=-0.092 Sum_probs=48.7
Q ss_pred EEeHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccc---ceeeccccceeccEE
Q 047109 446 GFCVDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRS---LYVDFTLPYTDMGIG 522 (808)
Q Consensus 446 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~ 522 (808)
|+--+|...+.++.|.++++.+.. -..++..+.+|.+|+.+..-...++.. ....-..++....++
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~~g-----------Sg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LV 87 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVAVG-----------TGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFV 87 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEEEC-----------HHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEE
T ss_pred hHHHHHHHHHHHHhCCeEEEEEcC-----------cHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEE
Confidence 455678888888888766665543 368889999999999876432222211 001123578888899
Q ss_pred EEEecCCC
Q 047109 523 MIVPTDRN 530 (808)
Q Consensus 523 ~lv~~~~~ 530 (808)
+++|+.++
T Consensus 88 LV~P~~~P 95 (242)
T 3kn3_A 88 IIGNPSFK 95 (242)
T ss_dssp EEECTHHH
T ss_pred EEEeCCCc
Confidence 99987643
No 320
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.81 E-value=1.1e+02 Score=30.72 Aligned_cols=81 Identities=7% Similarity=-0.046 Sum_probs=53.6
Q ss_pred cCCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHH
Q 047109 133 FKWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHL 210 (808)
Q Consensus 133 ~~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~ 210 (808)
-+-+.++++..+- .|-. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+....... ..
T Consensus 60 ~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 133 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFL-ETLTGIETVLDAAGYQMLIGNS----HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PF 133 (339)
T ss_dssp ---CEEEEEESCSTTCTTH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-TH
T ss_pred CCCCEEEEEeCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HH
Confidence 3446899988653 4555 6788999999999998765322 2244455667788888889988887643322 45
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|+
T Consensus 134 ~~~l~~~~i 142 (339)
T 3h5o_A 134 ERILSQHAL 142 (339)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhcCCC
Confidence 566666664
No 321
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=28.61 E-value=77 Score=30.86 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHcCcccEEEeceeeeccccceeeccccceeccEEEEEecCCCC
Q 047109 482 NDLIDQVYFQKFDAVVGETTITANRSLYVDFTLPYTDMGIGMIVPTDRNN 531 (808)
Q Consensus 482 ~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~lv~~~~~~ 531 (808)
...+..+.+|.+|++..+..++.+..+.---..|+....+++++++.++.
T Consensus 75 g~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~~ 124 (279)
T 4gd5_A 75 SAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNPV 124 (279)
T ss_dssp HHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCSC
T ss_pred HHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCcc
Confidence 56788999999999987766664433222223578888999999877554
No 322
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=28.37 E-value=59 Score=33.99 Aligned_cols=83 Identities=10% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH
Q 047109 125 GIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH 204 (808)
Q Consensus 125 a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 204 (808)
.+.+.++ +| +++.+++++.........+.+.+.++ |+.+........ .++.+.....++.+++.++|+||-.+.+
T Consensus 42 ~l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~-~p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 42 GLREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEP-NPAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp GHHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCS-SCBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCC-CcCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3555666 67 89999985542222136677888886 776543222322 3456677888888888899999987655
Q ss_pred H--HHHHHHH
Q 047109 205 A--LASHLFL 212 (808)
Q Consensus 205 ~--~~~~~l~ 212 (808)
. |+..++.
T Consensus 117 sviD~AK~iA 126 (408)
T 1oj7_A 117 SVLDGTKFIA 126 (408)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3 3444433
No 323
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=27.90 E-value=1.2e+02 Score=25.80 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=39.7
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS--HALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~l~~a~~~g 218 (808)
...+.+.+.+++.|..+... . +....+..+++..+|+|++... ..+...+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~-------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---R-------NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---S-------SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---C-------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 46678888888888775321 1 2244555666778999999754 345778888888764
No 324
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=27.73 E-value=1.7e+02 Score=25.94 Aligned_cols=79 Identities=8% Similarity=0.108 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
++.+....++++-+++.++- |..-.. .+.+.+.+.+.-.|+++... +.++....+.+-+..+.++++++-
T Consensus 15 GQV~t~W~k~~~~~~IiVvn-D~vA~D-~~~k~~lk~a~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~ll~k 84 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIICN-DDVFND-EVRRTLLRQAAPPGMKVNVV--------SLEKAVAVYHNPQYQDETVFYLFT 84 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEEC-HHHHTC-HHHHHHHHHTCCTTCEEEEE--------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hhheeeeccccCCCEEEEeC-ccccCC-HHHHHHHHhcCCCCCeEEEE--------EHHHHHHHHhcccCCCceEEEEEC
Confidence 56777888999999988863 332233 56777777777778886642 345666666665556778999999
Q ss_pred CHHHHHHHH
Q 047109 203 SHALASHLF 211 (808)
Q Consensus 203 ~~~~~~~~l 211 (808)
++.++..++
T Consensus 85 ~p~d~~~lv 93 (164)
T 1nrz_A 85 NPHDVLTMV 93 (164)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999987775
No 325
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=27.02 E-value=1.8e+02 Score=27.59 Aligned_cols=93 Identities=6% Similarity=-0.036 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCcEEEEEEec------------CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhc
Q 047109 124 KGIADLIRVFKWKHVILIYED------------NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLK 191 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d------------~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~ 191 (808)
...++.++..|.+.|=+.... ..... ...+.+++.+++.|+++........ ...+.+...+...+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~~--~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDA-QTQKEIKELAASKGIKIVGTGVYVA--EKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCH-HHHHHHHHHHHHTTCEEEEEEEECC--SSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCH-HHHHHHHHHHHHcCCeEEEEeccCC--ccHHHHHHHHHHHH
Confidence 456777888899888775422 11112 3468899999999999886544322 24457788888878
Q ss_pred CCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 047109 192 SSETKVFVVHMSHALASHLFLNAKKLGM 219 (808)
Q Consensus 192 ~~~~~viil~~~~~~~~~~l~~a~~~gl 219 (808)
.-+++.|++....+....+...|.+.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8889988888766667777777877775
No 326
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=26.55 E-value=1.7e+02 Score=28.09 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=50.9
Q ss_pred CCcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHH
Q 047109 134 KWKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLF 211 (808)
Q Consensus 134 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l 211 (808)
+-++++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.......++.+.+.+.|.||+....... ..+
T Consensus 7 ~~~~Igvi~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 80 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCA-AVVKGIEKTAEKNGYRILLCNT----ESDLARSRSCLTLLSGKMVDGVITMDALSEL-PEL 80 (285)
T ss_dssp CCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHH
T ss_pred CCCEEEEEeCCCCCchHH-HHHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHH
Confidence 34688998864 34555 6778888999999998765321 2233445566777777889988887543321 344
Q ss_pred HHHHHcCC
Q 047109 212 LNAKKLGM 219 (808)
Q Consensus 212 ~~a~~~gl 219 (808)
+.+. .|.
T Consensus 81 ~~l~-~~i 87 (285)
T 3c3k_A 81 QNII-GAF 87 (285)
T ss_dssp HHHH-TTS
T ss_pred HHHh-cCC
Confidence 5555 553
No 327
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.49 E-value=1e+02 Score=24.95 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=42.1
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC--HHHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS--HALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
...+.+...+++.|..+... . +. ...+..+++..+|+|++... ..+...++++.++..-...-.+.+.
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---~----~~---~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~ 82 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---E----NG---QIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVL 82 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S----SH---HHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEe---C----CH---HHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEE
Confidence 45577788888888776521 1 22 34455566678999999643 3356778888876542122234444
Q ss_pred eC
Q 047109 229 TA 230 (808)
Q Consensus 229 ~~ 230 (808)
++
T Consensus 83 s~ 84 (122)
T 3gl9_A 83 TA 84 (122)
T ss_dssp ES
T ss_pred ec
Confidence 44
No 328
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.47 E-value=1.2e+02 Score=24.80 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=38.2
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~~g 218 (808)
...+.+.+.+++.|..+... . +. ...+..+.+..+++|++.... .+...++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---~----~~---~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA---H----NG---FDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S----SH---HHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe---C----CH---HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 45677888888888876521 1 22 333444555778999997543 35778888888765
No 329
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=26.44 E-value=46 Score=28.54 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 047109 194 ETKVFVVHMSHALASHLFLNAKKLGMMSKGYSWIVTAS 231 (808)
Q Consensus 194 ~~~viil~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~ 231 (808)
.+|+++++..++....+++++.+.|. +.+|+.+..
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~~ 103 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPGA 103 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTTS
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCcc
Confidence 57899998888888888888888774 457776543
No 330
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.43 E-value=71 Score=31.96 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=51.9
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCC--CeEEEEEcCHH-HHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSE--TKVFVVHMSHA-LASHL 210 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~-~~~~~ 210 (808)
++|+++..+ +.|.. ...+.+.+.+++.|+.+..... ..+...-...++.+.+.+ .|.||+..... .....
T Consensus 6 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~l~~~~~----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYT-AFNKGAQSFAKSVGLPYVPLTT----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHH-HHHHHHHHHHHHHTCCEEEEEC----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHH-HHHHHHHHHHHHcCCEEEEecC----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 578888864 34444 6778888899999988765422 223344455677776677 89888865443 33466
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777777664
No 331
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=26.42 E-value=1.7e+02 Score=25.89 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
++.+....++++-+++.++- |..-.. .+.+.+.+.+.-.|+++... +.++....+.+-+..+.++++++-
T Consensus 18 GQV~t~W~~~~~~~~IiVvn-D~vA~D-~~~k~~lk~a~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~ll~k 87 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVVS-DEVAAD-TVRKTLLTQVAPPGVTAHVV--------DVAKMIRVYNNPKYAGERVMLLFT 87 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEEC-HHHHTC-HHHHHHHHHTCCTTCEEEEE--------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hheeeeeccccCCCEEEEeC-ccccCC-HHHHHHHHhcCCCCCeEEEE--------EHHHHHHHHhccccCCcEEEEEEC
Confidence 45667788899999988863 332233 56777777777778886642 345666666665556778999999
Q ss_pred CHHHHHHHHH
Q 047109 203 SHALASHLFL 212 (808)
Q Consensus 203 ~~~~~~~~l~ 212 (808)
++.++..+++
T Consensus 88 ~p~d~~~lve 97 (165)
T 1vsq_C 88 NPTDVERLVE 97 (165)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999877753
No 332
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=26.14 E-value=77 Score=30.64 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=46.6
Q ss_pred HHHhcCCcEEEEEEecC--CccccCcHHHHHHhhhcCCcE-EEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 129 LIRVFKWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDID-IARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 129 ll~~~~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
-++.-+-+.++++..+. .|.. ...+.+.+.+++.|.. +... .. ..+...-...++.+.+.+.|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~---~~-~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYA-QIIDGIQEVIQKEGYTALISF---ST-NSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEE---CS-SCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHH-HHHHHHHHHHHHCCCCEEEEE---eC-CCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34445567899998763 4445 6788899999999998 6543 21 22444556677788888899999887
No 333
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=26.09 E-value=93 Score=29.85 Aligned_cols=79 Identities=9% Similarity=0.109 Sum_probs=51.2
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHH-HHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHA-LASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~l~ 212 (808)
+.++++..+ +.|-. ...+.+.+.++++|..+..... ..+...-...++.+.+.+.|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFV-SLKDGAQKEADKLGYNLVVLDS----QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHH-HHHHHHHHHHHHcCcEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 468888764 23444 5778888899999988765321 12333445567777778899888865332 2235567
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777764
No 334
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.88 E-value=3.2e+02 Score=23.86 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=53.0
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH----HHHHHHH
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH----ALASHLF 211 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~~l 211 (808)
.++.+.....+.-. -....+...++..|+.+.+--. ..+. ...+..+++.++++|.+.+.. +....++
T Consensus 19 ~~vlla~~~gd~Hd-iG~~~va~~l~~~G~eVi~lG~----~~p~---e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHD-RGAKVVARALRDAGFEVVYTGL----RQTP---EQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCC-HHHHHHHHHHHHTTCEEECCCS----BCCH---HHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccH-HHHHHHHHHHHHCCCEEEECCC----CCCH---HHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 35555554443222 3457777888999999875321 1123 344555666889999998653 4577788
Q ss_pred HHHHHcCCCCCCeEEEEeC
Q 047109 212 LNAKKLGMMSKGYSWIVTA 230 (808)
Q Consensus 212 ~~a~~~gl~~~~~~~i~~~ 230 (808)
++.++.|. ..-.+|+++.
T Consensus 91 ~~L~~~g~-~~i~v~vGG~ 108 (161)
T 2yxb_A 91 AKLRELGA-DDIPVVLGGT 108 (161)
T ss_dssp HHHHHTTC-TTSCEEEEEC
T ss_pred HHHHhcCC-CCCEEEEeCC
Confidence 88888875 2234666554
No 335
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.86 E-value=45 Score=32.63 Aligned_cols=80 Identities=9% Similarity=-0.000 Sum_probs=53.6
Q ss_pred CCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHH
Q 047109 134 KWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLF 211 (808)
Q Consensus 134 ~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l 211 (808)
+-+.|+++..+. .|.. ...+.+.+.+++.|+.+..... ..+.+.....++.+.+.+.|.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFA-EVASGVESEARHKGYSVLLANT----AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 446889988653 3444 6788889999999998876432 22445556677788878899988876543 33455
Q ss_pred HHHHHcCC
Q 047109 212 LNAKKLGM 219 (808)
Q Consensus 212 ~~a~~~gl 219 (808)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (291)
T 3egc_A 81 RTELPKTF 88 (291)
T ss_dssp HHSSCTTS
T ss_pred HHhhccCC
Confidence 55555553
No 336
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.74 E-value=80 Score=30.62 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=50.4
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~ 212 (808)
+.++++..+ +.|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+.... +.....++
T Consensus 2 ~~Igvi~~~~~~~f~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFV-TLKNGAEEKAKELGYKIIVEDS----QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHH-HHHHHHHHHHHhcCcEEEEecC----CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 367888754 23444 5778888889999988765322 1233344556777777788988886533 33335667
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777775
No 337
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.72 E-value=70 Score=31.63 Aligned_cols=79 Identities=9% Similarity=0.033 Sum_probs=51.4
Q ss_pred EEEEEEecCC-ccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH-HHHHHHHHHH
Q 047109 137 HVILIYEDNT-WGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH-ALASHLFLNA 214 (808)
Q Consensus 137 ~v~ii~~d~~-~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~l~~a 214 (808)
+++++..+.. |.. ...+.+.+.+++.|+++.... +. ..+.......++++.+.+.|.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~--~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWS-QVEQGVKAAGKALGVDTKFFV--PQ-KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHH-HHHHHHHHHHHHHTCEEEEEC--CS-SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHH-HHHHHHHHHHHHcCCEEEEEC--CC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5777765422 555 678888899999998876532 11 1234455566777777789988886543 3334567777
Q ss_pred HHcCC
Q 047109 215 KKLGM 219 (808)
Q Consensus 215 ~~~gl 219 (808)
.+.|.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 338
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=25.19 E-value=2.7e+02 Score=26.59 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC
Q 047109 124 KGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS 203 (808)
Q Consensus 124 ~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 203 (808)
..+++..... -.-+.++++..-| . +..+.+...-+..++.|-....+ . + .+ ++...+..++|+|++.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlTd~~~F-~-gs~~dL~~ir~~v~lPvLrKDfi-~---~--~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILTEKHYF-K-GDPAFVRAARNLTCRPILAKDFY-I---D--TV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEECCCSSS-C-CCTHHHHHHHTTCCSCEEEECCC-C---S--TH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEeccccc-C-CCHHHHHHHHHhCCCCEEEeeCC-C---C--HH--HHHHHHHcCCCEEEEecc
Confidence 4455544444 5678887755544 3 45666666555567777755433 2 1 22 344577799999999865
Q ss_pred H---HHHHHHHHHHHHcCC
Q 047109 204 H---ALASHLFLNAKKLGM 219 (808)
Q Consensus 204 ~---~~~~~~l~~a~~~gl 219 (808)
. .+...+++.++++||
T Consensus 133 ~l~~~~l~~l~~~a~~lGl 151 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGM 151 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 4 578899999999987
No 339
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=25.04 E-value=1.2e+02 Score=25.66 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=46.0
Q ss_pred EEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHH
Q 047109 139 ILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKK 216 (808)
Q Consensus 139 ~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~ 216 (808)
++|.+|+. ...+.+...+++.|..++.... +. ...+..+++..+|+|++.... -+...++++.++
T Consensus 15 ILiVDD~~----~~r~~l~~~L~~~G~~~v~~a~------~g---~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~ 81 (134)
T 3to5_A 15 ILIVDDFS----TMRRIVKNLLRDLGFNNTQEAD------DG---LTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRA 81 (134)
T ss_dssp EEEECSCH----HHHHHHHHHHHHTTCCCEEEES------SH---HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred EEEEeCCH----HHHHHHHHHHHHcCCcEEEEEC------CH---HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 34444554 4567888888888976433211 22 233445555679999997443 457788888887
Q ss_pred cCCCCCCeEEEEeC
Q 047109 217 LGMMSKGYSWIVTA 230 (808)
Q Consensus 217 ~gl~~~~~~~i~~~ 230 (808)
..-...-.+.+.+.
T Consensus 82 ~~~~~~ipvI~lTa 95 (134)
T 3to5_A 82 DEELKHLPVLMITA 95 (134)
T ss_dssp STTTTTCCEEEEES
T ss_pred CCCCCCCeEEEEEC
Confidence 54322223444444
No 340
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.01 E-value=1.2e+02 Score=25.28 Aligned_cols=56 Identities=5% Similarity=0.072 Sum_probs=40.0
Q ss_pred CcHHHHHHhhhc-CCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEcC---HHHHHHHHHHHHH
Q 047109 151 NIIPYLFDSLHD-NDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHMS---HALASHLFLNAKK 216 (808)
Q Consensus 151 ~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~---~~~~~~~l~~a~~ 216 (808)
...+.+...+++ .|..+... . +....+..+++ ..+|+|++... ..+...++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~---~-------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV---E-------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---C-------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE---C-------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456778888888 88876521 1 23455667777 78999999754 4567888888888
No 341
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.96 E-value=2.3e+02 Score=21.67 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=46.9
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHh-cCCCCeEEEEEcCHHH-HHHHHHHHHHcCCCCCCeEEEE
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSML-KSSETKVFVVHMSHAL-ASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~viil~~~~~~-~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
+.+..|++.++++|.++-... ..+.+...+..+ +..++.++++..+..+ |..-++-.+.+|- ....|+
T Consensus 13 etlrkfkdiikkngfkvrtvr-------spqelkdsieelvkkynativvvvvddkewaekairfvkslga---qvliii 82 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVR-------SPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGA---QVLIII 82 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC-------SHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred HHHHHHHHHHHhcCceEEEec-------CHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCC---eEEEEE
Confidence 567899999999999876432 345566555554 4567888888776655 5555666677773 344444
Q ss_pred eCcc
Q 047109 229 TAST 232 (808)
Q Consensus 229 ~~~~ 232 (808)
-+..
T Consensus 83 ydqd 86 (134)
T 2l69_A 83 YDQD 86 (134)
T ss_dssp ECSC
T ss_pred EeCc
Confidence 4443
No 342
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.51 E-value=91 Score=30.30 Aligned_cols=81 Identities=9% Similarity=0.068 Sum_probs=50.1
Q ss_pred cCCcEEEEEEecC----CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHH
Q 047109 133 FKWKHVILIYEDN----TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALAS 208 (808)
Q Consensus 133 ~~w~~v~ii~~d~----~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 208 (808)
-+-+.|+++..+. .|.. ...+.+.+.+++.|..+..... ..+..........+.+.+.|.||+...... .
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 79 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTS-QMVFGITEVLSTTQYHLVVTPH----IHAKDSMVPIRYILETGSADGVIISKIEPN-D 79 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHH-HHHHHHHHHHTTSSCEEEECCB----SSGGGTTHHHHHHHHHTCCSEEEEESCCTT-C
T ss_pred CCCCEEEEEecCCccccHHHH-HHHHHHHHHHHHcCCEEEEecC----CcchhHHHHHHHHHHcCCccEEEEecCCCC-c
Confidence 3456889988752 4555 6788899999999998775322 112222334444455678888888754322 2
Q ss_pred HHHHHHHHcCC
Q 047109 209 HLFLNAKKLGM 219 (808)
Q Consensus 209 ~~l~~a~~~gl 219 (808)
..++.+.+.|+
T Consensus 80 ~~~~~l~~~~i 90 (288)
T 3gv0_A 80 PRVRFMTERNM 90 (288)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhCCC
Confidence 45666777665
No 343
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.44 E-value=91 Score=31.12 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=50.3
Q ss_pred CcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHH
Q 047109 135 WKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFL 212 (808)
Q Consensus 135 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~ 212 (808)
-..++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.+.-...++.+.+.+.|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYA-ELARGIEDIATMYKYNIILSNS----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHH-HHHHHHHHHHHHHTCEEEEEEC----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHH-HHHHHHHHHHHHcCCEEEEEeC----CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 4579999864 44555 6788888999999998765321 1123344567778877888988886543222 4455
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 5555553
No 344
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=24.18 E-value=1.8e+02 Score=26.45 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=46.0
Q ss_pred HHhcCCcEEEEEEecCC--ccc--cCcHHHHHHhhhc---CCcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEE
Q 047109 130 IRVFKWKHVILIYEDNT--WGS--DNIIPYLFDSLHD---NDIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVH 201 (808)
Q Consensus 130 l~~~~w~~v~ii~~d~~--~g~--~~~~~~~~~~~~~---~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~ 201 (808)
+..+.--+++||...|+ .|. +.....+...+++ .|..+.....++. +.+.+...+++..+ .++|+||..
T Consensus 9 v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D---d~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 9 TNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD---EIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp ----CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS---CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC---CHHHHHHHHHHHhhcCCCCEEEEc
Confidence 34455568888887654 222 2445677788887 7888887766665 56678888877654 378999886
Q ss_pred c
Q 047109 202 M 202 (808)
Q Consensus 202 ~ 202 (808)
+
T Consensus 86 G 86 (189)
T 1jlj_A 86 G 86 (189)
T ss_dssp S
T ss_pred C
Confidence 4
No 345
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=24.12 E-value=4e+02 Score=25.20 Aligned_cols=78 Identities=4% Similarity=-0.064 Sum_probs=46.4
Q ss_pred EEEEEEecCCc-chhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhc--CCeEEEEecCCChhH
Q 047109 3 HVGVILDMRSW-AGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQN--VDLQAIICTEMTPTG 79 (808)
Q Consensus 3 ~IG~i~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~--~~v~aiiG~~~~s~~ 79 (808)
+||.+....+. .......|++-|+++.+ + + +. +.....+...+.+.+.++++. .++.||+... + ..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g----~-~--~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~-d-~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRFG----I-P--YE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFN-D-EM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTT----C-C--EE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESS-H-HH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHcC----C-C--ee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcC-h-HH
Confidence 47777654332 24445677777776632 1 2 22 223445777788888888875 5799999865 4 34
Q ss_pred HHHHHHhcCCCC
Q 047109 80 AHILAEIGSKAK 91 (808)
Q Consensus 80 ~~~~~~~~~~~~ 91 (808)
+..+...+...+
T Consensus 189 a~g~~~al~~~g 200 (277)
T 3cs3_A 189 AIGVYKYVAETN 200 (277)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHHcC
Confidence 444444444443
No 346
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.92 E-value=58 Score=31.32 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=53.5
Q ss_pred EEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCC-CeEEEEEcC-HHHHHHHHH
Q 047109 137 HVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSE-TKVFVVHMS-HALASHLFL 212 (808)
Q Consensus 137 ~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~-~~~~~~~l~ 212 (808)
+++++..+ +.|.. ...+.+.+.+++.|.++..... .. ..+.+.....++.+.+.+ .|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWR-QVYLGAQKAADEAGVTLLHRST-KD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHH-HHHHHHHHHHHHHTCEEEECCC-SS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEECC-CC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 57777754 34555 6788889999999998775321 11 123445556777777777 899888764 334556778
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 347
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.67 E-value=90 Score=30.02 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=51.3
Q ss_pred CCcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHH
Q 047109 134 KWKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLF 211 (808)
Q Consensus 134 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l 211 (808)
+-+.|+++..+ +.|.. ...+.+.+.+++.|..+..... ..+.......++.+.+.+.|.||+..... ..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~ 78 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFT-LIARGVEDVALAHGYQVLIGNS----DNDIKKAQGYLATFVSHNCTGMISTAFNE---NII 78 (277)
T ss_dssp ---CEEEEESCTTSHHHH-HHHHHHHHHHHHTTCCEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECGGGH---HHH
T ss_pred CCCEEEEEECCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCh---HHH
Confidence 34578888865 34445 6788899999999998775322 22444556677788778899999877332 345
Q ss_pred H-HHHHcCC
Q 047109 212 L-NAKKLGM 219 (808)
Q Consensus 212 ~-~a~~~gl 219 (808)
+ .+.+.|+
T Consensus 79 ~~~l~~~~i 87 (277)
T 3e61_A 79 ENTLTDHHI 87 (277)
T ss_dssp HHHHHHC-C
T ss_pred HHHHHcCCC
Confidence 6 6777765
No 348
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.54 E-value=82 Score=30.25 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=50.1
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLN 213 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~ 213 (808)
+.|+++..+ +.|-. ...+.+.+.+++.|..+.... . ..+.......++.+.+.+.|.+|+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~---~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACA-HFLPSFQQALNKAGYQLLLGY---S-DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHH-HHHHHHHHHHHHTSCEECCEE---C-TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHH-HHHHHHHHHHHHCCCEEEEEc---C-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 478888864 23444 677888899999998875432 1 223444556777777788888887654322 245566
Q ss_pred HHHcCC
Q 047109 214 AKKLGM 219 (808)
Q Consensus 214 a~~~gl 219 (808)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666664
No 349
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.51 E-value=1.3e+02 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=40.7
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH----HHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH----ALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~~l~~a~~~g 218 (808)
...+.+...+++.|..+... . +....+..+++..+++|++.... .+...++++.++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---~-------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF---A-------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE---S-------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe---C-------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 46678888888888876521 1 23445566677789999997553 45778888888875
No 350
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=23.43 E-value=2.4e+02 Score=24.41 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=59.4
Q ss_pred cCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CC-eEEEEEcCHHHHHHHHHHHHHcCCCC
Q 047109 144 DNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ET-KVFVVHMSHALASHLFLNAKKLGMMS 221 (808)
Q Consensus 144 d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~-~viil~~~~~~~~~~l~~a~~~gl~~ 221 (808)
.|.-|. ++.+.+.+.|++.|..|.-.-....+..+.+++...+.+.-.+ .. +.|++|+++.. +.-+|.+..
T Consensus 8 sDhaG~-~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG---~siaANKv~--- 80 (149)
T 2vvr_A 8 CDHVGF-ILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVG---ISIAANKFA--- 80 (149)
T ss_dssp ECTTGG-GGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH---HHHHHHTST---
T ss_pred eCchhH-HHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHH---HHHHHhcCC---
Confidence 344566 8999999999999998875433332122456766666544333 33 55666665543 222343331
Q ss_pred CCeEEEEeCccccccccCCccccccccceeEEEeeccCCcHHHHHHHHHHH
Q 047109 222 KGYSWIVTASTMNFLHSMDSSVVESSMQGVLGFKRYVPASKQLRNFTLKWK 272 (808)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~ 272 (808)
.=+.=+..+.....+ .. ... -.+++.+..........++.++.|-
T Consensus 81 GIRAal~~d~~sA~~----ar-~hN-naNVl~lG~rvig~ela~~iv~~fL 125 (149)
T 2vvr_A 81 GIRAVVCSEPYSAQL----SR-QNN-DTNVLAFGSRVVGLELAKMIVDAWL 125 (149)
T ss_dssp TCCEEECSSHHHHHH----HH-HHH-CCCEEEEETTTBCHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHH----HH-HhC-CCcEEEECccccCHHHHHHHHHHHH
Confidence 112222233222110 00 111 2355655554445555667776664
No 351
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=23.19 E-value=72 Score=30.64 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc-ccEEEeceeeeccc---cceee--ccccceeccEE
Q 047109 449 VDVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQK-FDAVVGETTITANR---SLYVD--FTLPYTDMGIG 522 (808)
Q Consensus 449 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~r---~~~~d--fs~p~~~~~~~ 522 (808)
-++++.+.++.|.++++.+- .-..++..+.+|. +|+.++.-.-..++ ...++ -..++....++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~-----------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lv 106 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA-----------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLV 106 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE-----------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEE
T ss_pred HHHHHHHHHHhCCeEEEEEC-----------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEE
Confidence 46788888888877666543 3367788888886 99988642111111 12222 23467778899
Q ss_pred EEEecCCC
Q 047109 523 MIVPTDRN 530 (808)
Q Consensus 523 ~lv~~~~~ 530 (808)
+++++.++
T Consensus 107 l~~~~~~~ 114 (253)
T 3gzg_A 107 LVAPASSK 114 (253)
T ss_dssp EEEETTCC
T ss_pred EEEECCCC
Confidence 99988743
No 352
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=23.03 E-value=1.5e+02 Score=26.83 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
++.+....++++-+++.++- |..-.. .+.+.+.+.+.-.|+++... +.++....+.+-+..+.++++++-
T Consensus 36 GQVat~W~k~~~~~~IiVvn-D~vA~D-~~~k~~lkmA~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~il~k 105 (187)
T 3lfj_A 36 GQVMTRWMKGFPEASIVIID-DELAVD-EFMKNIYTMAAPPGVKVKVF--------GVDAALKEWSQKTSVEEKVFLLFK 105 (187)
T ss_dssp TTHHHHHHTTCTTCEEEEEC-HHHHHC-HHHHHHHHHTSCTTCCEEEE--------CHHHHHHHHHSBCSSCEEEEEEES
T ss_pred hhhhheeccccCCCEEEEEC-ccccCC-HHHHHHHHHhccCCCeEEEE--------EHHHHHHHHhCCccCCceEEEEEC
Confidence 56777888999999988863 332222 56666666666678876542 335666666655545678999999
Q ss_pred CHHHHHHHHH
Q 047109 203 SHALASHLFL 212 (808)
Q Consensus 203 ~~~~~~~~l~ 212 (808)
++.++..+++
T Consensus 106 ~p~d~~~lve 115 (187)
T 3lfj_A 106 NIDTCKRVMD 115 (187)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999888754
No 353
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=22.80 E-value=3.8e+02 Score=23.30 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=46.1
Q ss_pred cEEEEEEecCCccc-----cCcHHHHHHhhhcCCcEEEEEE-ecCCCCCChHHHHHHHHHhc-CCCCeEEEEEcCHHHH-
Q 047109 136 KHVILIYEDNTWGS-----DNIIPYLFDSLHDNDIDIARRI-TISMSSNTDDQVIEKLSMLK-SSETKVFVVHMSHALA- 207 (808)
Q Consensus 136 ~~v~ii~~d~~~g~-----~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~- 207 (808)
+++.++.++-..|. ......+.+.+.+.+..+.... .++ ..+..+....+.+.. ..++|+|++....+++
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~--G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~ 80 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASIS--GETSGGALRRLDALLEQYEPTHVLIELGANDGL 80 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCT--TCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHH
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcC--CccHHHHHHHHHHHHhhcCCCEEEEEeecccCC
Confidence 56777776555442 1456777777777655444321 221 223445555554443 3488999998776653
Q ss_pred ------------HHHHHHHHHcC
Q 047109 208 ------------SHLFLNAKKLG 218 (808)
Q Consensus 208 ------------~~~l~~a~~~g 218 (808)
..+++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~ 103 (185)
T 3hp4_A 81 RGFPVKKMQTNLTALVKKSQAAN 103 (185)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHcC
Confidence 44666666654
No 354
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=22.67 E-value=6.4e+02 Score=25.93 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=34.3
Q ss_pred cCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHH
Q 047109 133 FKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSM 189 (808)
Q Consensus 133 ~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 189 (808)
..-|.++++. +..|+- +..+.+.+.+++.|.++.....+.....+.+++....+.
T Consensus 350 ~~~K~~~~FG-SyGWsg-~a~~~~~~~l~~~~~~~v~~~~~~~~~~de~~lee~~~~ 404 (410)
T 4dik_A 350 NYEKPVLVFG-VHGWAP-SAERTAGELLKETKFRILSFTEIKGSNMDERKIEEAISL 404 (410)
T ss_dssp CCCCEEEEEE-ECCCCC-TTSCCHHHHHTTSSCEEEEEEEECSTTCCHHHHHHHHHH
T ss_pred cCCCEEEEEE-CCCCCc-HHHHHHHHHHHHCCCEEECcEEEECCCCCHHHHHHHHHH
Confidence 4456777665 555666 788999999999999987654443202234444444333
No 355
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=22.63 E-value=4.1e+02 Score=25.39 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred HHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc---
Q 047109 126 IADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM--- 202 (808)
Q Consensus 126 ~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~--- 202 (808)
++++.. -|-.-++++++..-| . +..+.+...-+..++.|-....+- +. -++...+..++|+|++.+
T Consensus 69 iA~~~~-~GA~aiSVLTd~~~F-~-Gs~~~L~~vr~~v~lPvLrKDFii----d~----yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITTEEKYF-N-GSYETLRKIASSVSIPILMSDFIV----KE----SQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEECCSTTT-C-CCHHHHHHHHTTCSSCEEEESCCC----SH----HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeCCCCCC-C-CCHHHHHHHHHhcCCCEeeccccc----cH----HHHHHHHHcCCCeeehHHhhc
Confidence 344444 467788888755544 4 577777776666788876554332 21 235555667999999964
Q ss_pred CHHHHHHHHHHHHHcCC
Q 047109 203 SHALASHLFLNAKKLGM 219 (808)
Q Consensus 203 ~~~~~~~~l~~a~~~gl 219 (808)
+.++...+...|.++||
T Consensus 138 ~~~~l~~l~~~A~~lGl 154 (258)
T 4a29_A 138 TERELESLLEYARSYGM 154 (258)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhH
Confidence 45678999999999998
No 356
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.45 E-value=1.3e+02 Score=30.25 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=52.7
Q ss_pred cCCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHH
Q 047109 133 FKWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHL 210 (808)
Q Consensus 133 ~~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~ 210 (808)
-.-+.++++..+- .|-. ...+.+.+.+++.|..+..... ..+...-...++.+.+.+.|.||+....... ..
T Consensus 68 ~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~ 141 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFA-QTAQSLTDVLEQGGLQLLLGYT----AYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QT 141 (355)
T ss_dssp ---CEEEEEESCSBCHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HH
T ss_pred CCCCEEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HH
Confidence 3446799988653 3444 5778888999999999865422 2244455567777777888988887544332 45
Q ss_pred HHHHHHcCC
Q 047109 211 FLNAKKLGM 219 (808)
Q Consensus 211 l~~a~~~gl 219 (808)
++.+.+.|+
T Consensus 142 ~~~l~~~~i 150 (355)
T 3e3m_A 142 IRLLQRASI 150 (355)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhCCC
Confidence 666777765
No 357
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=22.42 E-value=2.8e+02 Score=27.30 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=58.9
Q ss_pred CeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCccccc-ceeeecc---CC-chhhHHHHHHHHHHHhcC------
Q 047109 66 DLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTS-YSIQIDQ---DD-EASQSQAKGIADLIRVFK------ 134 (808)
Q Consensus 66 ~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~-~~~r~~p---~~-~~~~~~~~a~~~ll~~~~------ 134 (808)
-+.-++||. ..+....++.++...++=.+....+... .++ +|.|+.- .. ..-..+-.++..+...++
T Consensus 23 ~iLtv~c~D-rpGIVa~VS~~La~~g~NI~d~~q~~d~-~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~ 100 (302)
T 3o1l_A 23 FRLVIACPD-RVGIVAKVSNFLASHNGWITEASHHSDN-LSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT 100 (302)
T ss_dssp EEEEEEEEC-CTTHHHHHHHHHHHTTCCEEEEEEEEET-TTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHCCCCEEEeeEEecC-CCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence 367788998 9999999998887777666655443333 344 6667732 11 100134455555555543
Q ss_pred ----CcEEEEEEecCCccccCcHHHHHHhhhcC--CcEEEEE
Q 047109 135 ----WKHVILIYEDNTWGSDNIIPYLFDSLHDN--DIDIARR 170 (808)
Q Consensus 135 ----w~~v~ii~~d~~~g~~~~~~~~~~~~~~~--g~~i~~~ 170 (808)
-++++++.+.. |. .++.+.+..+.. +..|+..
T Consensus 101 ~~~~~~ri~vl~Sg~--g~--nl~~ll~~~~~g~l~~~I~~V 138 (302)
T 3o1l_A 101 DSAQKKRVVLMASRE--SH--CLADLLHRWHSDELDCDIACV 138 (302)
T ss_dssp ETTSCCEEEEEECSC--CH--HHHHHHHHHHTTCSCSEEEEE
T ss_pred ccCCCcEEEEEEeCC--ch--hHHHHHHHHHCCCCCcEEEEE
Confidence 23788888555 43 566666665543 4566554
No 358
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.29 E-value=1.3e+02 Score=30.29 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=49.9
Q ss_pred cEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHHH
Q 047109 136 KHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFLN 213 (808)
Q Consensus 136 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~~ 213 (808)
+.++++..+ +.|.. ...+.+.+.+++.|..+..... ..+.......++.+.+.+.|.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFA-AMVTEIQSTASKAGLATIITNS----NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHH-HHHHHHHHHHHHTTCCEEEEEC----TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHH-HHHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 468888865 33444 6778888999999988765322 223344556677777778888888765433 245566
Q ss_pred HHHcCC
Q 047109 214 AKKLGM 219 (808)
Q Consensus 214 a~~~gl 219 (808)
+.+.|+
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 666664
No 359
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.06 E-value=1.1e+02 Score=20.18 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhcC
Q 047109 795 VAFLVSSIHKKRP 807 (808)
Q Consensus 795 ~vf~~E~~~~~~~ 807 (808)
+++++-+++++|+
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3344444555554
No 360
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.56 E-value=2e+02 Score=22.96 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=37.5
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC--HHHHHHHHHHHHHc
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS--HALASHLFLNAKKL 217 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~l~~a~~~ 217 (808)
...+.+...+++.|..+.. .. +. ...+..+++..+|+|++... ..+...++++.++.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~----~~---~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AH----DG---NEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES----SH---HHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCEEEEE---eC----CH---HHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567778888888887642 11 22 33455556678999999754 34567788887764
No 361
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.48 E-value=2.3e+02 Score=23.34 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=38.6
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc-CHHHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM-SHALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~-~~~~~~~~l~~a~~~g 218 (808)
...+.+...+++.|..+... . + ....+..+.+..+|+|++.. ...+...++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~---~----~---~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIWA---K----N---EQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEEE---S----S---HHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEE---C----C---HHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 46678888888888876521 1 2 23445556667899999986 2235667788887764
No 362
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.22 E-value=1.6e+02 Score=29.57 Aligned_cols=65 Identities=5% Similarity=0.013 Sum_probs=42.2
Q ss_pred CCcEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 134 KWKHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 134 ~w~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
.-..++++..+- .|.. ...+.+.+.+++.|..+..... .. .+.+.....++.+.+.+.|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPS-QIVAAILSRADQLGASVVVSMV-ER--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC-CS--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHH-HHHHHHHHHHHHcCCEEEEEeC-CC--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 346789888652 3444 5778888999999998775322 11 1233445667777778888888863
No 363
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=21.22 E-value=1.8e+02 Score=25.84 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcC-CcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEE
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDN-DIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVH 201 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 201 (808)
++.+....++++-+++.++- |..-.. .+.+.+.+.+.-. |+++... +.++....+.+-+ .+.++++++
T Consensus 20 GQVat~W~k~~~~~~IiVvn-D~vA~D-~~~k~~lkmA~P~~gvk~~i~--------sve~ai~~~~~~~-~~~~v~il~ 88 (168)
T 3eye_A 20 GQVGVTWTSTIGANLLVVVD-DVVAND-DIQQKLMGITAETYGFGIRFF--------TIEKTINVIGKAA-PHQKIFLIC 88 (168)
T ss_dssp THHHHHHHHHHTCSEEEEEC-HHHHHS-GGGGHHHHHHHHHHTCEEEEE--------CHHHHHHHGGGCC-TTCCEEEEE
T ss_pred hhhhheeccccCCCEEEEEc-ccccCC-HHHHHHHHhcCCCCCCeEEEE--------EHHHHHHHHhccc-CCceEEEEE
Confidence 56677888999999988863 332222 5666666666666 8887642 3345555555544 567899999
Q ss_pred cCHHHHHHHHH
Q 047109 202 MSHALASHLFL 212 (808)
Q Consensus 202 ~~~~~~~~~l~ 212 (808)
-++.++..+++
T Consensus 89 k~p~d~~~lve 99 (168)
T 3eye_A 89 RTPQTVRKLVE 99 (168)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999888754
No 364
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.09 E-value=1.6e+02 Score=26.36 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=41.3
Q ss_pred EEEEEEecCC--ccc--cCcHHHHHHhhh---cCCcEEEEEEecCCCCCChHHHHHHHHHhcCC-CCeEEEEEc
Q 047109 137 HVILIYEDNT--WGS--DNIIPYLFDSLH---DNDIDIARRITISMSSNTDDQVIEKLSMLKSS-ETKVFVVHM 202 (808)
Q Consensus 137 ~v~ii~~d~~--~g~--~~~~~~~~~~~~---~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~ 202 (808)
+++||...|+ .|+ +.....+...++ +.|+.+ ....++. +.+.+...+++..+. ++|+||..+
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~D---d~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPD---ERDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECS---CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCC---CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 6788776553 222 134566777666 889988 5555554 566788888877653 789998874
No 365
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=20.99 E-value=6.2e+02 Score=25.12 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=69.3
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEe-cCCChhHHH
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIIC-TEMTPTGAH 81 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG-~~~~s~~~~ 81 (808)
.|+.+|-..+. .-+..++.|+.++..+ .+.+-..++.-.--+.+.-+.+.++.. +.+|+- .. ......
T Consensus 60 ~la~lF~epST---RTR~SFE~A~~~LGg~------~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~-~~~~~~ 128 (325)
T 1vlv_A 60 TLAMIFEKRST---RTRLAFETAFAEEGGH------PIFLSPNDIHLGAKESLEDTARVLGRM-VDAIMFRGY-KQETVE 128 (325)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHTTCE------EEEECTTTCCTTTSSCHHHHHHHHHTT-CSEEEEESS-CHHHHH
T ss_pred EEEEEeccCCc---chHHHHHHHHHHcCCe------EEEECCccccCCCCcCHHHHHHHHHHh-CCEEEEECC-ChHHHH
Confidence 36677766554 4567788887776432 222222222111112233333333332 333332 12 333333
Q ss_pred HHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---HhcC---CcEEEEEEecCCccccCcHHH
Q 047109 82 ILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVFK---WKHVILIYEDNTWGSDNIIPY 155 (808)
Q Consensus 82 ~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~ 155 (808)
. ++...++|+|.-+. + . . +-.+++++++ +++| -.+++++.+ . .+ .....
T Consensus 129 ~---lA~~~~vPVINa~~-~-~-------------~---HPtQaLaDl~Ti~e~~g~l~gl~va~vGD-~-~~--rva~S 183 (325)
T 1vlv_A 129 K---LAEYSGVPVYNGLT-D-E-------------F---HPTQALADLMTIEENFGRLKGVKVVFMGD-T-RN--NVATS 183 (325)
T ss_dssp H---HHHHHCSCEEESCC-S-S-------------C---CHHHHHHHHHHHHHHHSCSTTCEEEEESC-T-TS--HHHHH
T ss_pred H---HHHhCCCCEEeCCC-C-C-------------C---CcHHHHHHHHHHHHHhCCcCCcEEEEECC-C-Cc--CcHHH
Confidence 3 33444789888332 2 2 3 5567788775 3444 357888754 2 23 47788
Q ss_pred HHHhhhcCCcEEEEE
Q 047109 156 LFDSLHDNDIDIARR 170 (808)
Q Consensus 156 ~~~~~~~~g~~i~~~ 170 (808)
+...+...|..+...
T Consensus 184 l~~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 184 LMIACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 888888889887754
No 366
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.93 E-value=1.2e+02 Score=25.11 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=37.1
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHHcC
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKKLG 218 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~~g 218 (808)
...+.+...+++.|..+.. .. +. ...+..+.+..+|+|++.... .+...++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~----~~---~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---AA----SG---EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES----SH---HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---eC----CH---HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 4567788888888877642 11 22 333444555779999997543 35677888887753
No 367
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.78 E-value=5.6e+02 Score=24.50 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=59.1
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEecCCChhHH--
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRDSKGDPLHALTTVLNLMQNVDLQAIICTEMTPTGA-- 80 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d~~~~~~~a~~~a~~li~~~~v~aiiG~~~~s~~~-- 80 (808)
+||++...+...+.....+++-|+++.+ + ++......+ .....+++.++.. ++.||+.+. +....
T Consensus 135 ~I~~i~~~~~~~~~~r~~g~~~al~~~g----i---~~~~~~~~~---~~~~~~~~~~l~~--~~dai~~~~-D~~a~g~ 201 (295)
T 3lft_A 135 TIGALYSSSEDNSKTQVEEFKAYAEKAG----L---TVETFAVPS---TNEIASTVTVMTS--KVDAIWVPI-DNTIASG 201 (295)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTT----C---EEEEEEESS---GGGHHHHHHHHTT--TCSEEEECS-CHHHHHT
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcC----C---EEEEEecCC---HHHHHHHHHHHHh--cCCEEEECC-chhHHHH
Confidence 6888877544334455677777776542 2 222222222 2345556666653 688999877 54332
Q ss_pred -HHHHHhcCCCCccEEeccCCCCccccc-ceeeeccCCchhhHHHHHHHHHH
Q 047109 81 -HILAEIGSKAKIPVISLYATLPSSLTS-YSIQIDQDDEASQSQAKGIADLI 130 (808)
Q Consensus 81 -~~~~~~~~~~~iP~is~~~~~~~~ls~-~~~r~~p~~~~~~~~~~a~~~ll 130 (808)
.++...+...++|++++... . +.. .+.....+.. .+++..++++
T Consensus 202 ~~~l~~~~~~~~i~vig~d~~--~-~~~~~Lttv~~~~~---~~G~~Aa~~l 247 (295)
T 3lft_A 202 FPTVVSSNQSSKKPIYPSATA--M-VEVGGLASVVIDQH---DLGVATGKMI 247 (295)
T ss_dssp HHHHHHHTTTTCCCEEESSHH--H-HTTTCCEEEECCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCCHH--H-HhcCcEEEEecCHH---HHHHHHHHHH
Confidence 23344555678999997421 1 222 2223344444 5666666554
No 368
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.78 E-value=95 Score=25.82 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=41.9
Q ss_pred cEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcC--HHHHHHHHHH
Q 047109 136 KHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMS--HALASHLFLN 213 (808)
Q Consensus 136 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~l~~ 213 (808)
.+|.+ .+|+. ...+.+...+++.|..+... . +. ...+..+++..+|+|++... ..+...++++
T Consensus 7 ~~iLi-vdd~~----~~~~~l~~~l~~~g~~v~~~---~----~~---~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRILI-CEDDP----DIARLLNLMLEKGGFDSDMV---H----SA---AQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEEE-ECSCH----HHHHHHHHHHHHTTCEEEEE---C----SH---HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEEE-EcCCH----HHHHHHHHHHHHCCCeEEEE---C----CH---HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 35544 34443 45678888888888875321 1 22 33444555577999999644 3457788888
Q ss_pred HHHc
Q 047109 214 AKKL 217 (808)
Q Consensus 214 a~~~ 217 (808)
.++.
T Consensus 72 l~~~ 75 (140)
T 3grc_A 72 LRRD 75 (140)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 8873
No 369
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=20.76 E-value=1e+02 Score=29.91 Aligned_cols=80 Identities=8% Similarity=0.012 Sum_probs=45.0
Q ss_pred CcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHHHHHHH
Q 047109 135 WKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALASHLFL 212 (808)
Q Consensus 135 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~l~ 212 (808)
-++|+++..+ +.|.. ...+.+.+.+++.|+.+... +.. ..+.+.....++.+.+.+.|.||+....... ..++
T Consensus 8 ~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~--~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 82 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQ-QILDGIQEEAHKNGYNLIIV--YSG-SADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQ 82 (290)
T ss_dssp CCEEEEECCCCSSSHHH-HHHHHHHHHHHTTTCEEEEE--C-----------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CCEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCeEEEE--eCC-CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHH
Confidence 3578888864 34555 67788889999999887653 011 1122233456667777889988887644322 4455
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|.
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 6665553
No 370
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.75 E-value=2.5e+02 Score=23.05 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=36.7
Q ss_pred CcHHHHHHhhhc-CCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHHc
Q 047109 151 NIIPYLFDSLHD-NDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKKL 217 (808)
Q Consensus 151 ~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~~ 217 (808)
...+.+...+++ .|..++.... +..+ .+..+.+..+++|++.... .+...++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~~------~~~~---a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIAY------NPFD---AGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEC------SHHH---HHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEEEC------CHHH---HHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456778888888 8887332211 2233 3444445678999998643 3567888888874
No 371
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.69 E-value=1e+02 Score=30.04 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCcEEEEEEe----c--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHHH
Q 047109 134 KWKHVILIYE----D--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHALA 207 (808)
Q Consensus 134 ~w~~v~ii~~----d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 207 (808)
+-+.|+++.. + +.|-. ...+.+.+.+++.|..+.....-. .......++.+.+.+.|.||+.......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFL-EMISWIGIELGKRGLDLLLIPDEP-----GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHH-HHHHHHHHHHHHTTCEEEEEEECT-----TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred ccceEEEEecCCCccccChhHH-HHHHHHHHHHHHCCCEEEEEeCCC-----hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 3467888887 2 23444 577888899999999877644311 1122345555666778888887544322
Q ss_pred HHHHHHHHHcCC
Q 047109 208 SHLFLNAKKLGM 219 (808)
Q Consensus 208 ~~~l~~a~~~gl 219 (808)
..++.+.+.|+
T Consensus 79 -~~~~~l~~~~i 89 (294)
T 3qk7_A 79 -FRLQYLQKQNF 89 (294)
T ss_dssp -HHHHHHHHTTC
T ss_pred -HHHHHHHhCCC
Confidence 55666777765
No 372
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=20.69 E-value=1.2e+02 Score=29.82 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=71.7
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhcCCCcceEEEEEEec----CCCCHH-HHHHHHHHhhhcCCeEEEEecCCCh
Q 047109 3 HVGVILDMRSWAGKISNSCISMAISDFYALNTHYKTRLVLHSRD----SKGDPL-HALTTVLNLMQNVDLQAIICTEMTP 77 (808)
Q Consensus 3 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~d----~~~~~~-~a~~~a~~li~~~~v~aiiG~~~~s 77 (808)
.|+.+|-..+. .-+..++.|+.++..+ .+.+--.+ .++.+. .+.+....+ . .+.++=.+. .
T Consensus 40 ~~~~lF~e~ST---RTR~SFe~A~~~LGg~------~i~l~~~~~s~~~kgEsl~DTarvls~~-~--D~iviR~~~--~ 105 (299)
T 1pg5_A 40 TISIAFFEPST---RTYLSFQKAIINLGGD------VIGFSGEESTSVAKGENLADTIRMLNNY-S--DGIVMRHKY--D 105 (299)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHTTCE------EEEEECC-------CCCHHHHHHHHHHH-C--SEEEEEESS--B
T ss_pred EEEEEecCCCc---chHHhHHHHHHHhCCE------EEEeCCCCcccccCCCCHHHHHHHHHHh-C--CEEEEeCCC--h
Confidence 46777776654 4577888888877543 22222112 122222 233333333 1 244443443 2
Q ss_pred hHHHHHHHhcCCCCccEEeccCCCCcccccceeeeccCCchhhHHHHHHHHHH---HhcC---CcEEEEEEecCCccccC
Q 047109 78 TGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQIDQDDEASQSQAKGIADLI---RVFK---WKHVILIYEDNTWGSDN 151 (808)
Q Consensus 78 ~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~~p~~~~~~~~~~a~~~ll---~~~~---w~~v~ii~~d~~~g~~~ 151 (808)
..... ++...++|+|.-+-++.. +-.+++++++ +++| -.+++++. |..+++
T Consensus 106 ~~~~~---la~~~~vPVINaG~g~~~-----------------HPtQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~r-- 162 (299)
T 1pg5_A 106 GASRF---ASEISDIPVINAGDGKHE-----------------HPTQAVIDIYTINKHFNTIDGLVFALLG-DLKYAR-- 162 (299)
T ss_dssp THHHH---HHHHCSSCEEEEEETTTB-----------------CHHHHHHHHHHHHHHHSCSTTCEEEEEE-CCSSCH--
T ss_pred hHHHH---HHHhCCCCEEeCCCCCCc-----------------CcHHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCCc--
Confidence 33333 344557898885443333 5567777775 3444 35888876 433444
Q ss_pred cHHHHHHhhhcC-CcEEEEE
Q 047109 152 IIPYLFDSLHDN-DIDIARR 170 (808)
Q Consensus 152 ~~~~~~~~~~~~-g~~i~~~ 170 (808)
....+...+... |..+...
T Consensus 163 va~Sl~~~~~~~~g~~v~~~ 182 (299)
T 1pg5_A 163 TVNSLLRILTRFRPKLVYLI 182 (299)
T ss_dssp HHHHHHHHGGGSCCSEEEEE
T ss_pred hHHHHHHHHHhCCCCEEEEE
Confidence 677888888888 8887653
No 373
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.66 E-value=79 Score=30.80 Aligned_cols=80 Identities=8% Similarity=-0.030 Sum_probs=49.8
Q ss_pred CCcEEEEEEec--CCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHH---HHHHhcCCCCeEEEEEcCHHHHH
Q 047109 134 KWKHVILIYED--NTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIE---KLSMLKSSETKVFVVHMSHALAS 208 (808)
Q Consensus 134 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~viil~~~~~~~~ 208 (808)
+-+.++++..+ +.|.. ...+.+.+.+++.|..+..... .. +...-.. .++.+.+.+.|.||+...... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 80 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYG-TILKQTDLELRAVHRHVVVATG-CG---ESTPREQALEAVRFLIGRDCDGVVVISHDLH-D 80 (290)
T ss_dssp -CCEEEEECSCSCSHHHH-HHHHHHHHHHHHTTCEEEEECC-CS---SSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-H
T ss_pred CCCeEEEEeCCCCCchHH-HHHHHHHHHHHHCCCEEEEEeC-CC---chhhhhhHHHHHHHHHhcCccEEEEecCCCC-H
Confidence 34578888754 33445 6778888999999998765321 11 2223344 677777778898888654322 2
Q ss_pred HHHHHHHHcCC
Q 047109 209 HLFLNAKKLGM 219 (808)
Q Consensus 209 ~~l~~a~~~gl 219 (808)
..++.+.+.|.
T Consensus 81 ~~~~~l~~~~i 91 (290)
T 2rgy_A 81 EDLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHhhcCC
Confidence 44566666664
No 374
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=20.57 E-value=4.5e+02 Score=26.26 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=47.7
Q ss_pred CCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCC-CChHHHHHHHHHhc-CCCCeEEEEE--cCHHHHHH
Q 047109 134 KWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSS-NTDDQVIEKLSMLK-SSETKVFVVH--MSHALASH 209 (808)
Q Consensus 134 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~l~~l~-~~~~~viil~--~~~~~~~~ 209 (808)
.--+++++..+.. +...+.+.+.+.|+-+.....+-. . ..+.++...|+.+. +.++++|+++ ..+..-+.
T Consensus 167 ~~G~vgivSqSG~-----l~~~i~~~~~~~g~G~S~~VsiGn-~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~ 240 (334)
T 3mwd_B 167 RPGSVAYVSRSGG-----MSNELNNIISRTTDGVYEGVAIGG-DRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYK 240 (334)
T ss_dssp SCCSEEEEESCHH-----HHHHHHHHHHHHSSCEEEEEECCS-SSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHH
T ss_pred CCCCEEEEeCchH-----HHHHHHHHHHhcCCCeEEEEECCC-CccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHH
Confidence 3347999876664 344555666666655555444433 1 02335666666665 4678899998 33322278
Q ss_pred HHHHHHHcCC
Q 047109 210 LFLNAKKLGM 219 (808)
Q Consensus 210 ~l~~a~~~gl 219 (808)
+++.+++...
T Consensus 241 ~~~~~r~~~~ 250 (334)
T 3mwd_B 241 ICRGIKEGRL 250 (334)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhhcC
Confidence 8888887554
No 375
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.54 E-value=3.6e+02 Score=22.15 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred CcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCH--HHHHHHHHHHHHcCCCCCCeEEEE
Q 047109 151 NIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSH--ALASHLFLNAKKLGMMSKGYSWIV 228 (808)
Q Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~~l~~a~~~gl~~~~~~~i~ 228 (808)
...+.+...+++.|........ .+....+..+.+..+|+|++.... .+...++++.++.+....-.+.++
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~--------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~ 87 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFV--------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVIL 87 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE--------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEEE--------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEE
Confidence 4567888888888876332211 123445556666789999997543 347788888887432222234444
Q ss_pred eC
Q 047109 229 TA 230 (808)
Q Consensus 229 ~~ 230 (808)
++
T Consensus 88 s~ 89 (144)
T 3kht_A 88 TD 89 (144)
T ss_dssp ET
T ss_pred eC
Confidence 44
No 376
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=20.50 E-value=87 Score=31.33 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecccccee-eccccceeccEEEEEecC
Q 047109 450 DVFKAAIDSLTFEVPYEFIPFEDPNGRMPGSYNDLIDQVYFQKFDAVVGETTITANRSLYV-DFTLPYTDMGIGMIVPTD 528 (808)
Q Consensus 450 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~-dfs~p~~~~~~~~lv~~~ 528 (808)
++++.+.+.-+. ++.+... .-...+..+.+|++|+++.+..++.+..... -...|+....++++++.+
T Consensus 18 ~~~~~f~~~p~v--~i~v~~~---------gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~ 86 (321)
T 1ixh_A 18 KWADTYQKETGN--KVNYQGI---------GSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIP 86 (321)
T ss_dssp HHHHHHHHHHCC--EEEEEEC---------CHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCT
T ss_pred HHHHHHHhcCCc--eEEEecC---------CCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCC
Confidence 455555553344 4444433 3468899999999999987766654432100 124689999999999876
Q ss_pred C
Q 047109 529 R 529 (808)
Q Consensus 529 ~ 529 (808)
+
T Consensus 87 ~ 87 (321)
T 1ixh_A 87 G 87 (321)
T ss_dssp T
T ss_pred C
Confidence 4
No 377
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=20.47 E-value=1.9e+02 Score=29.60 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHhcCC---cEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCC---CeEE
Q 047109 125 GIADLIRVFKW---KHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSE---TKVF 198 (808)
Q Consensus 125 a~~~ll~~~~w---~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~vi 198 (808)
.+.+.++.++. +++.++++..... ..+.+.+++.|+.+.....+.. .++.+.....++.+++.+ +|+|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~-----~~l~~~L~~~g~~~~~f~~v~~-~pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQH-----KPLAARVPNKAHDLVIYVNVDD-EPTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTT-----SHHHHHSCCCTTSEEEEECCSS-CCBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhh-----hHHHHHHHhcCCeEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCCEE
Confidence 46677777753 7787888544321 2466778777877654334444 456677777777777666 8999
Q ss_pred EEEcCHH
Q 047109 199 VVHMSHA 205 (808)
Q Consensus 199 il~~~~~ 205 (808)
|-.+.+.
T Consensus 114 IavGGGS 120 (375)
T 3rf7_A 114 VGLGGGS 120 (375)
T ss_dssp EEEESHH
T ss_pred EEeCCcH
Confidence 8887664
No 378
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.34 E-value=31 Score=32.38 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=41.8
Q ss_pred HhhhcCCeEEEEecCCChhHHHHHHHhcCCCCccEEeccCCCCcccccceeee-ccCCchhhHHHHHHHHHHHh
Q 047109 60 NLMQNVDLQAIICTEMTPTGAHILAEIGSKAKIPVISLYATLPSSLTSYSIQI-DQDDEASQSQAKGIADLIRV 132 (808)
Q Consensus 60 ~li~~~~v~aiiG~~~~s~~~~~~~~~~~~~~iP~is~~~~~~~~ls~~~~r~-~p~~~~~~~~~~a~~~ll~~ 132 (808)
.-+.+.++..|+||. .|+-......+++.+++|+|+.+ .. +|- ....+ ..+..+.+++..
T Consensus 24 ~~~~k~kiI~llGpP-GsGKgTqa~~L~~~~g~~hIstG---dl------lR~~i~~~t---~lg~~~~~~~~~ 84 (217)
T 3umf_A 24 QKLAKAKVIFVLGGP-GSGKGTQCEKLVQKFHFNHLSSG---DL------LRAEVQSGS---PKGKELKAMMER 84 (217)
T ss_dssp CCTTSCEEEEEECCT-TCCHHHHHHHHHHHHCCEEECHH---HH------HHHHHTTCC---HHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCC-CCCHHHHHHHHHHHHCCceEcHH---HH------HHHHHHcCC---chHHHHHHHHhc
Confidence 334556899999999 99988888889999999999853 22 222 23345 556666666654
No 379
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.23 E-value=86 Score=30.81 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=51.1
Q ss_pred cEEEEEEecC--CccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEcCHHH-HHHHHH
Q 047109 136 KHVILIYEDN--TWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHMSHAL-ASHLFL 212 (808)
Q Consensus 136 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~l~ 212 (808)
.+|+++..+. .|.. ...+.+.+.+++.|+.+..... ..+.......++.+.+.+.|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~l~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRA-AETNVAKSEAEKRGITLKIADG----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHH-HHHHHHHHHHHHcCCEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 4788887643 3444 5678888889999998765422 223444556677777778898888654432 235566
Q ss_pred HHHHcCC
Q 047109 213 NAKKLGM 219 (808)
Q Consensus 213 ~a~~~gl 219 (808)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6777664
No 380
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=20.14 E-value=2.3e+02 Score=24.90 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=41.8
Q ss_pred cEEEEEEecCCc--cc--cCcHHHHHHhhhcC-----CcEEEEEEecCCCCCChHHHHHHHHHhcC-CCCeEEEEEc
Q 047109 136 KHVILIYEDNTW--GS--DNIIPYLFDSLHDN-----DIDIARRITISMSSNTDDQVIEKLSMLKS-SETKVFVVHM 202 (808)
Q Consensus 136 ~~v~ii~~d~~~--g~--~~~~~~~~~~~~~~-----g~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~ 202 (808)
-+++||...|+- |. +.....+.+.+.+. |..+.....++. +.+.+...+++..+ .++|+||..+
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D---d~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD---EVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS---CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC---CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 477887765431 21 12234556666666 888877666655 56678888887754 4789998875
No 381
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=20.09 E-value=1.9e+02 Score=25.56 Aligned_cols=79 Identities=9% Similarity=0.126 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCccccCcHHHHHHhhhcCCcEEEEEEecCCCCCChHHHHHHHHHhcCCCCeEEEEEc
Q 047109 123 AKGIADLIRVFKWKHVILIYEDNTWGSDNIIPYLFDSLHDNDIDIARRITISMSSNTDDQVIEKLSMLKSSETKVFVVHM 202 (808)
Q Consensus 123 ~~a~~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 202 (808)
++.+....++++-+++.++- |..-.. .+.+.+.+.+.-.|+++... +.++....+.+-+..+.++++++-
T Consensus 16 GQV~t~W~~~~~~~~IiVvn-D~vA~D-~~~k~~lk~a~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~ll~k 85 (163)
T 1ble_A 16 GQILTRWIKVHAADRIIVVS-DDIAQD-EMRKTLILSVAPSNVKASAV--------SVSKMAKAFHSPRYEGVTAMLLFE 85 (163)
T ss_dssp TTHHHHHHHHHTCSEEEEEC-HHHHHC-HHHHHHHHTSSCTTSEEEEE--------CHHHHHHHHHCSTTTTCEEEEEES
T ss_pred hhheeeeccccCCCEEEEeC-ccccCC-HHHHHHHHhhCCCCCeEEEE--------EHHHHHHHHhcccCCCceEEEEEC
Confidence 45667778888989988863 332222 56666666676678886642 345666677765556778999999
Q ss_pred CHHHHHHHH
Q 047109 203 SHALASHLF 211 (808)
Q Consensus 203 ~~~~~~~~l 211 (808)
++.++..++
T Consensus 86 ~p~d~~~lv 94 (163)
T 1ble_A 86 NPSDIVSLI 94 (163)
T ss_dssp SSHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999987774
Done!