BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047110
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 37/211 (17%)
Query: 586 VYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDV----ANNAQKAEFDQVAGSVC 641
+ +DGP+G +S+D Y+VV+L+G GIG TPF SI++ V NNA + ++
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKI----- 55
Query: 642 KIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHN--FLS-SVYQEGDGR 698
Y YW+ R+ +FEWF D++ L+ + E +N FLS ++Y G
Sbjct: 56 ---------YFYWLCRDTHAFEWFADLLQ-----LLESQMQERNNAGFLSYNIYLTGWDE 101
Query: 699 SAILSVIQALHYA---RTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCG- 754
S QA H+A D+I+ T Y RP+W N F +A +HP RIGVF CG
Sbjct: 102 S------QANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP 155
Query: 755 -SXXXXXXXXXXCTTFSYRTNTRFVFHKEHF 784
+ + S F+F+KE+F
Sbjct: 156 EALAETLSKQSISNSESGPRGVHFIFNKENF 186
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 24/174 (13%)
Query: 61 ITSLEIIPLRFTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPS 120
+ L+ + + N W VE RF++L + V+ S F CI
Sbjct: 12 LKGLQFVTAKVGNDGWAAVEKRFNQLQ-----VDGVLLRSRFGKCIG------------- 53
Query: 121 NFVAMQQTPEFANEILRAL-RGRSEWKVDITKNELRDYWHRMAGS-VDSRIQLFFYMCDR 178
M + EFA ++ +L R R K +TK+EL+D++ ++ D+R++ FF M D+
Sbjct: 54 ----MDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDK 109
Query: 179 NFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTN 232
N DG++ ++K+ I SASANKLS E A EY A IME LD GY+E+ +
Sbjct: 110 NADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMED 163
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 497 IKNLTPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDF 553
++NL+ S ++ +Q +G + AG Y+ V P + E +S +S P +
Sbjct: 116 VENLSDS-----TITFDIQLDDGQPDIHFLAGQYVNVTLPGTT--ETRSYSFSSQPGNRL 168
Query: 554 LSVHIRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIG 613
+R + G E + AK K+ GP+G+ VK V++L G G G
Sbjct: 169 TGFVVRNVPQ------GKMSEYLSVQAKAGDKMSFTGPFGSFYLRDVKRPVLMLAG-GTG 221
Query: 614 ATPFISIIR 622
PF+S+++
Sbjct: 222 IAPFLSMLQ 230
>pdb|4F7D|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4F7D|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4FK8|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
pdb|4FK8|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
Length = 271
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 607 LIGLGIGATPFISIIRDVANNAQKAEFDQVAGS-VCKIPKGPLKAYLYWVTREQISFEWF 665
++ G G PF+SIIRD + FD+V + C++ KG L AY+ ++ + E+
Sbjct: 127 MLSTGTGLAPFMSIIRDPDIYER---FDKVVLTHTCRL-KGEL-AYMDYIKHDLPGHEYL 181
Query: 666 RDVITE 671
DVI E
Sbjct: 182 GDVIRE 187
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFL 220
R++L CD N+D ID DM TI+ + + +T +E Q +AA F+
Sbjct: 200 RMRLVSISCDPNYDFSIDGHDM--TIIETDGVDSQELTVDEIQIFAAQRYSFV 250
>pdb|2XPG|A Chain A, Crystal Structure Of A Mhc Class I-Peptide Complex
pdb|3RL1|A Chain A, Hiv Rt Derived Peptide Complexed To Hla-A0301
pdb|3RL2|A Chain A, Hiv Nef Derived Peptide Nef73 Complexed To Hla-A0301
Length = 274
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 40/177 (22%)
Query: 126 QQTPEFANEILRALRGRSEW-KVDITKNELRDYWHRM-AGSVDSRIQLFFYMCDRNFDGK 183
Q+ PE+ ++ R ++ +S+ +VD+ LR Y+++ AGS IQ+ Y CD DG+
Sbjct: 54 QEGPEYWDQETRNVKAQSQTDRVDL--GTLRGYYNQSEAGS--HTIQIM-YGCDVGSDGR 108
Query: 184 I------DEIDMKQTI---------LGSASANKLSMTHEEAQEYAASIMEFLD------- 221
D D K I + A +++ EA A + +LD
Sbjct: 109 FLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWL 168
Query: 222 ----TKKRGYLEVTNPHKDDLYHEPMSKNEVRFRSYWRRAWIVLFWLLICAVLFTWK 274
+ L+ T+P K + H P+S +E R W + F+ + TW+
Sbjct: 169 RRYLENGKETLQRTDPPKTHMTHHPISDHEATL-----RCWALGFY--PAEITLTWQ 218
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 65/241 (26%)
Query: 126 QQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKI- 184
Q+ PE+ I + +G+ +W + L Y+++ AG + +Q + Y CD DG++
Sbjct: 54 QEGPEYWERITQIAKGQEQW-FRVNLRTLLGYYNQSAGGTHT-LQ-WMYGCDVGSDGRLL 110
Query: 185 -----------DEIDMKQTILGSASAN------KLSMTHEEAQEYAASIME--------- 218
D I + + + +A+ + A EY + +E
Sbjct: 111 RGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHR 170
Query: 219 FLDTKKRGYLEVTNPHKDDLYHEPMSKNEVRFRSYWRRAWIVLFWLLICAVLFTWKFIQY 278
+L L +P K + H P SK EV R W + F+ + TW+
Sbjct: 171 YLKNGNATLLRTDSP-KAHVTHHPRSKGEVTL-----RCWALGFY--PADITLTWQL--- 219
Query: 279 SHRPAFQVMGYCLSTAKGAAETLKLNMALI-LLPVSRNTVTWLRKKRWLSSIIPFNDNIN 337
E L +M L+ P T ++W S ++P N
Sbjct: 220 ------------------NGEELTQDMELVETRPAGDGTF-----QKWASVVVPLGKEQN 256
Query: 338 F 338
+
Sbjct: 257 Y 257
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 65/241 (26%)
Query: 126 QQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKI- 184
Q+ PE+ I + +G+ +W + L Y+++ AG + +Q + Y CD DG++
Sbjct: 54 QEGPEYWERITQIAKGQEQW-FRVNLRTLLGYYNQSAGGTHT-LQ-WMYGCDVGSDGRLL 110
Query: 185 -----------DEIDMKQTILGSASAN------KLSMTHEEAQEYAASIME--------- 218
D I + + + +A+ + A EY + +E
Sbjct: 111 RGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHR 170
Query: 219 FLDTKKRGYLEVTNPHKDDLYHEPMSKNEVRFRSYWRRAWIVLFWLLICAVLFTWKFIQY 278
+L L +P K + H P SK EV R W + F+ + TW+
Sbjct: 171 YLKNGNATLLRTDSP-KAHVTHHPRSKGEVTL-----RCWALGFY--PADITLTWQL--- 219
Query: 279 SHRPAFQVMGYCLSTAKGAAETLKLNMALI-LLPVSRNTVTWLRKKRWLSSIIPFNDNIN 337
E L +M L+ P T ++W S ++P N
Sbjct: 220 ------------------NGEELTQDMELVETRPAGDGTF-----QKWASVVVPLGKEQN 256
Query: 338 F 338
+
Sbjct: 257 Y 257
>pdb|3OC5|A Chain A, Crystal Structure Of The Vibrio Cholerae Secreted
Colonization Factor Tcpf
Length = 318
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 161 MAGSVDSRIQLF--FYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIME 218
+AG DS +L+ FY+ FD +I D +T++ A+ KLS QEY
Sbjct: 84 LAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALN--QEYITG--R 139
Query: 219 FLDTKKRGYLEVTN 232
FL TK+ G ++ N
Sbjct: 140 FL-TKENGRYDIVN 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,040,965
Number of Sequences: 62578
Number of extensions: 948951
Number of successful extensions: 2198
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 12
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)