Query 047110
Match_columns 784
No_of_seqs 547 out of 4026
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 1E-80 2.2E-85 717.7 42.0 608 147-784 3-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 3.7E-58 8E-63 524.9 32.9 337 291-693 150-492 (699)
3 PLN02844 oxidoreductase/ferric 100.0 1.3E-56 2.7E-61 515.0 40.4 436 291-784 153-720 (722)
4 PLN02292 ferric-chelate reduct 100.0 1.6E-56 3.5E-61 512.7 36.3 341 291-694 167-513 (702)
5 COG4097 Predicted ferric reduc 100.0 7.2E-41 1.6E-45 341.0 25.6 383 300-784 47-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.8E-31 3.9E-36 271.3 23.4 204 501-784 3-210 (210)
7 PRK08051 fre FMN reductase; Va 100.0 9.9E-29 2.2E-33 254.8 22.2 223 495-784 3-229 (232)
8 cd06189 flavin_oxioreductase N 100.0 1.2E-28 2.6E-33 253.1 22.6 219 498-784 2-224 (224)
9 cd06216 FNR_iron_sulfur_bindin 100.0 2.8E-28 6E-33 253.6 25.0 233 483-784 2-243 (243)
10 cd06195 FNR1 Ferredoxin-NADP+ 100.0 2.2E-28 4.8E-33 254.1 23.5 228 499-784 2-241 (241)
11 cd06184 flavohem_like_fad_nad_ 100.0 6.1E-28 1.3E-32 251.7 25.1 231 494-784 6-243 (247)
12 cd06210 MMO_FAD_NAD_binding Me 100.0 6.9E-28 1.5E-32 249.6 24.6 225 495-784 2-235 (236)
13 cd06212 monooxygenase_like The 100.0 7.1E-28 1.5E-32 248.8 24.0 225 496-784 2-231 (232)
14 cd06213 oxygenase_e_transfer_s 100.0 1.1E-27 2.3E-32 246.6 24.3 222 496-784 2-227 (227)
15 cd06190 T4MO_e_transfer_like T 100.0 1E-27 2.2E-32 247.7 24.1 227 500-784 2-231 (232)
16 cd06211 phenol_2-monooxygenase 100.0 1.2E-27 2.6E-32 248.0 24.8 227 495-784 7-238 (238)
17 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.2E-27 2.5E-32 246.6 24.3 221 496-784 3-227 (228)
18 cd06191 FNR_iron_sulfur_bindin 100.0 9E-28 1.9E-32 247.9 23.1 225 498-784 2-231 (231)
19 cd06215 FNR_iron_sulfur_bindin 100.0 7.5E-28 1.6E-32 248.6 21.9 225 498-784 2-231 (231)
20 cd06194 FNR_N-term_Iron_sulfur 100.0 1E-27 2.2E-32 246.0 21.9 216 500-784 2-221 (222)
21 cd06198 FNR_like_3 NAD(P) bind 100.0 1.2E-27 2.5E-32 244.4 22.3 207 507-784 7-215 (216)
22 cd06197 FNR_like_2 FAD/NAD(P) 100.0 9E-28 2E-32 245.1 21.4 192 501-784 2-219 (220)
23 cd06217 FNR_iron_sulfur_bindin 100.0 1.8E-27 4E-32 246.3 23.8 228 495-784 2-235 (235)
24 cd06188 NADH_quinone_reductase 100.0 2.1E-27 4.6E-32 252.3 23.3 231 494-784 9-283 (283)
25 cd06187 O2ase_reductase_like T 100.0 2.8E-27 6E-32 243.1 23.1 220 500-784 2-224 (224)
26 cd06214 PA_degradation_oxidore 100.0 4.6E-27 9.9E-32 244.3 24.9 230 495-784 2-240 (241)
27 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 3.6E-27 7.9E-32 258.6 24.7 231 495-784 2-241 (352)
28 cd00322 FNR_like Ferredoxin re 100.0 3.9E-27 8.4E-32 241.8 21.6 218 502-782 3-223 (223)
29 PRK07609 CDP-6-deoxy-delta-3,4 100.0 6E-27 1.3E-31 255.6 24.1 226 493-784 101-332 (339)
30 PRK11872 antC anthranilate dio 100.0 5.4E-27 1.2E-31 255.1 23.5 225 493-784 105-335 (340)
31 PRK10684 HCP oxidoreductase, N 100.0 1E-26 2.2E-31 252.6 24.0 225 495-784 10-237 (332)
32 cd06196 FNR_like_1 Ferredoxin 100.0 7.2E-27 1.6E-31 239.0 21.3 213 496-782 2-218 (218)
33 PRK13289 bifunctional nitric o 99.9 2.5E-26 5.4E-31 256.6 25.1 232 494-784 154-392 (399)
34 PRK10926 ferredoxin-NADP reduc 99.9 1.1E-25 2.4E-30 234.0 24.3 214 494-768 4-227 (248)
35 PRK05713 hypothetical protein; 99.9 5.6E-26 1.2E-30 244.5 21.3 212 495-784 92-308 (312)
36 PRK08345 cytochrome-c3 hydroge 99.9 1.9E-25 4.2E-30 237.3 24.9 225 494-771 5-236 (289)
37 cd06221 sulfite_reductase_like 99.9 1.2E-25 2.6E-30 234.7 22.0 207 500-771 2-214 (253)
38 cd06183 cyt_b5_reduct_like Cyt 99.9 3E-25 6.4E-30 229.6 24.2 217 498-771 2-226 (234)
39 COG1018 Hmp Flavodoxin reducta 99.9 6.6E-25 1.4E-29 227.5 25.2 222 493-784 4-230 (266)
40 cd06218 DHOD_e_trans FAD/NAD b 99.9 3.5E-25 7.6E-30 230.1 22.5 209 500-784 2-213 (246)
41 PLN03116 ferredoxin--NADP+ red 99.9 8.1E-25 1.8E-29 234.4 25.3 221 494-769 24-281 (307)
42 PRK05464 Na(+)-translocating N 99.9 4.3E-25 9.4E-30 246.0 24.0 231 494-784 133-407 (409)
43 cd06185 PDR_like Phthalate dio 99.9 4.3E-25 9.4E-30 224.6 21.8 202 501-784 2-210 (211)
44 PRK00054 dihydroorotate dehydr 99.9 6.9E-25 1.5E-29 228.8 21.7 210 494-783 4-213 (250)
45 cd06208 CYPOR_like_FNR These f 99.9 2.7E-24 5.8E-29 228.6 25.6 222 495-770 9-262 (286)
46 TIGR01941 nqrF NADH:ubiquinone 99.9 1.2E-24 2.7E-29 242.1 22.1 230 495-784 130-403 (405)
47 PRK08221 anaerobic sulfite red 99.9 3.6E-24 7.9E-29 224.4 23.3 208 495-771 8-216 (263)
48 PTZ00274 cytochrome b5 reducta 99.9 4.3E-24 9.3E-29 228.5 24.1 224 492-765 50-281 (325)
49 cd06220 DHOD_e_trans_like2 FAD 99.9 3.3E-24 7.2E-29 221.3 21.9 199 498-784 2-200 (233)
50 cd06192 DHOD_e_trans_like FAD/ 99.9 4.9E-24 1.1E-28 221.6 23.3 144 500-672 2-147 (243)
51 cd06219 DHOD_e_trans_like1 FAD 99.9 4.4E-24 9.4E-29 222.3 22.4 199 498-770 2-203 (248)
52 TIGR02911 sulfite_red_B sulfit 99.9 8E-24 1.7E-28 221.6 23.0 208 495-771 6-214 (261)
53 PLN03115 ferredoxin--NADP(+) r 99.9 1.5E-23 3.3E-28 226.5 24.6 222 495-770 91-342 (367)
54 PRK06222 ferredoxin-NADP(+) re 99.9 1.3E-23 2.7E-28 222.5 21.9 199 498-770 3-204 (281)
55 KOG0534 NADH-cytochrome b-5 re 99.9 3.3E-23 7.1E-28 212.6 22.9 222 494-772 51-279 (286)
56 PRK05802 hypothetical protein; 99.9 4.1E-23 8.8E-28 221.2 23.6 152 494-674 64-224 (320)
57 cd06182 CYPOR_like NADPH cytoc 99.9 4.9E-23 1.1E-27 216.1 22.5 207 506-770 14-238 (267)
58 PTZ00319 NADH-cytochrome B5 re 99.9 4.9E-23 1.1E-27 219.6 22.4 220 493-770 32-291 (300)
59 cd06200 SiR_like1 Cytochrome p 99.9 8.1E-23 1.8E-27 212.2 23.1 194 508-769 17-225 (245)
60 TIGR03224 benzo_boxA benzoyl-C 99.9 2.5E-22 5.4E-27 222.5 24.7 214 495-770 143-386 (411)
61 cd06201 SiR_like2 Cytochrome p 99.9 4.6E-22 1E-26 211.3 24.0 209 494-770 45-268 (289)
62 PF08030 NAD_binding_6: Ferric 99.9 6.8E-23 1.5E-27 198.1 14.7 153 602-767 1-156 (156)
63 PLN02252 nitrate reductase [NA 99.9 6.2E-22 1.4E-26 235.5 24.1 224 492-772 632-881 (888)
64 COG0543 UbiB 2-polyprenylpheno 99.9 1.7E-21 3.7E-26 202.3 23.3 204 496-771 9-216 (252)
65 COG5126 FRQ1 Ca2+-binding prot 99.9 1.6E-21 3.5E-26 182.4 11.5 137 71-235 14-152 (160)
66 cd06193 siderophore_interactin 99.8 4.7E-20 1E-24 190.6 19.7 207 499-784 1-233 (235)
67 PRK12778 putative bifunctional 99.8 7.9E-20 1.7E-24 219.3 22.0 199 498-770 3-204 (752)
68 PTZ00306 NADH-dependent fumara 99.8 1.9E-19 4.2E-24 223.6 24.6 224 493-772 913-1154(1167)
69 PRK12779 putative bifunctional 99.8 1.7E-19 3.7E-24 217.8 23.3 211 494-770 648-870 (944)
70 KOG0027 Calmodulin and related 99.8 1.6E-19 3.4E-24 173.1 11.4 136 73-235 4-145 (151)
71 PRK12775 putative trifunctiona 99.8 2.1E-18 4.6E-23 210.3 22.3 199 498-771 3-205 (1006)
72 KOG0034 Ca2+/calmodulin-depend 99.8 6.6E-19 1.4E-23 171.1 11.4 140 72-235 28-171 (187)
73 PF08022 FAD_binding_8: FAD-bi 99.8 1.8E-20 4E-25 167.3 -0.5 100 495-595 2-104 (105)
74 KOG0028 Ca2+-binding protein ( 99.7 1.3E-17 2.7E-22 151.7 11.3 135 73-234 29-165 (172)
75 KOG0044 Ca2+ sensor (EF-Hand s 99.7 9.1E-18 2E-22 163.0 10.9 145 71-235 23-171 (193)
76 cd06199 SiR Cytochrome p450- l 99.7 3.2E-17 6.9E-22 179.6 15.3 188 519-770 129-331 (360)
77 cd06206 bifunctional_CYPOR The 99.7 5.9E-17 1.3E-21 179.3 15.1 190 522-772 147-353 (384)
78 cd06207 CyPoR_like NADPH cytoc 99.7 1.1E-16 2.5E-21 176.9 17.3 179 537-771 161-354 (382)
79 TIGR01931 cysJ sulfite reducta 99.7 1.1E-16 2.5E-21 185.5 14.8 183 520-770 367-568 (597)
80 cd06203 methionine_synthase_re 99.6 6E-15 1.3E-19 163.7 18.1 135 538-691 172-316 (398)
81 PTZ00184 calmodulin; Provision 99.6 2.8E-15 6E-20 143.3 12.8 137 71-234 5-143 (149)
82 COG2871 NqrF Na+-transporting 99.6 1E-14 2.2E-19 144.5 16.6 228 495-772 135-399 (410)
83 cd06204 CYPOR NADPH cytochrome 99.6 9.7E-15 2.1E-19 162.8 17.5 181 538-770 176-387 (416)
84 PRK06214 sulfite reductase; Pr 99.6 2.1E-14 4.5E-19 162.2 19.4 125 537-690 313-451 (530)
85 PTZ00183 centrin; Provisional 99.6 7.3E-15 1.6E-19 142.0 13.0 136 72-234 12-149 (158)
86 cd06202 Nitric_oxide_synthase 99.6 1.8E-14 4E-19 160.1 17.5 178 538-770 175-373 (406)
87 PRK10953 cysJ sulfite reductas 99.6 1.2E-14 2.7E-19 167.6 15.1 188 520-770 370-571 (600)
88 KOG0038 Ca2+-binding kinase in 99.6 1.7E-14 3.7E-19 128.4 9.6 142 71-234 22-172 (189)
89 PF01794 Ferric_reduct: Ferric 99.5 1.5E-13 3.1E-18 127.5 11.5 121 298-452 2-124 (125)
90 PF00175 NAD_binding_1: Oxidor 99.4 6.4E-13 1.4E-17 119.9 11.1 107 607-764 1-109 (109)
91 KOG0031 Myosin regulatory ligh 99.4 1.4E-12 3.1E-17 118.0 11.6 133 71-234 26-160 (171)
92 KOG0036 Predicted mitochondria 99.3 1.9E-11 4.2E-16 127.6 12.0 132 74-236 11-143 (463)
93 KOG0030 Myosin essential light 99.3 2E-11 4.3E-16 108.9 9.9 136 73-235 7-147 (152)
94 KOG3378 Globins and related he 99.2 2.6E-11 5.6E-16 119.7 9.5 128 494-627 149-287 (385)
95 COG5126 FRQ1 Ca2+-binding prot 99.2 2.8E-11 6E-16 113.8 9.0 126 50-194 28-155 (160)
96 PF00970 FAD_binding_6: Oxidor 99.2 2.9E-11 6.2E-16 107.1 7.5 91 496-595 1-97 (99)
97 COG0369 CysJ Sulfite reductase 99.2 3.4E-10 7.4E-15 129.0 16.2 183 538-771 371-559 (587)
98 PLN02964 phosphatidylserine de 99.2 1.6E-10 3.5E-15 132.1 13.5 114 59-195 124-243 (644)
99 KOG0027 Calmodulin and related 99.2 6.3E-11 1.4E-15 113.6 8.6 131 49-194 15-148 (151)
100 PRK06567 putative bifunctional 99.1 4.1E-10 9E-15 133.0 15.1 119 495-626 791-914 (1028)
101 KOG0037 Ca2+-binding protein, 99.1 4.1E-10 9E-15 109.0 11.8 129 76-235 56-184 (221)
102 KOG1158 NADP/FAD dependent oxi 99.1 6.3E-10 1.4E-14 126.6 13.6 199 524-770 409-616 (645)
103 KOG0028 Ca2+-binding protein ( 99.1 3.1E-10 6.7E-15 103.9 8.0 128 50-195 41-170 (172)
104 PF13499 EF-hand_7: EF-hand do 99.0 4.7E-10 1E-14 91.3 5.0 63 168-234 1-63 (66)
105 KOG4223 Reticulocalbin, calume 99.0 1.2E-09 2.5E-14 111.9 8.2 131 74-234 160-300 (325)
106 PTZ00183 centrin; Provisional 98.9 3E-09 6.6E-14 102.6 9.5 127 50-194 25-153 (158)
107 PTZ00184 calmodulin; Provision 98.8 1.3E-08 2.9E-13 96.9 9.1 127 50-194 19-147 (149)
108 KOG1159 NADP-dependent flavopr 98.7 1.7E-08 3.6E-13 108.2 7.7 188 526-772 357-548 (574)
109 KOG4223 Reticulocalbin, calume 98.7 2.3E-08 4.9E-13 102.5 7.6 136 75-236 75-225 (325)
110 KOG0044 Ca2+ sensor (EF-Hand s 98.7 3.3E-08 7.1E-13 96.6 8.3 100 77-195 64-175 (193)
111 cd05022 S-100A13 S-100A13: S-1 98.7 1.2E-08 2.5E-13 87.5 4.5 61 167-234 8-70 (89)
112 KOG0037 Ca2+-binding protein, 98.7 1.7E-07 3.8E-12 91.0 12.7 146 50-234 65-215 (221)
113 cd05027 S-100B S-100B: S-100B 98.6 7.3E-08 1.6E-12 82.7 5.1 60 167-234 8-74 (88)
114 cd05026 S-100Z S-100Z: S-100Z 98.5 1E-07 2.2E-12 83.0 5.3 65 167-234 10-76 (93)
115 KOG0034 Ca2+/calmodulin-depend 98.5 8E-07 1.7E-11 86.9 10.5 98 79-195 68-175 (187)
116 PF13499 EF-hand_7: EF-hand do 98.5 3.6E-07 7.8E-12 74.1 6.7 60 132-193 2-66 (66)
117 cd05022 S-100A13 S-100A13: S-1 98.4 4.7E-07 1E-11 77.7 6.0 70 75-162 6-77 (89)
118 cd00252 SPARC_EC SPARC_EC; ext 98.4 2.5E-07 5.5E-12 83.4 4.2 60 164-235 45-104 (116)
119 KOG0751 Mitochondrial aspartat 98.4 3.2E-06 6.9E-11 90.4 12.2 144 75-234 31-202 (694)
120 cd05025 S-100A1 S-100A1: S-100 98.4 4.5E-07 9.8E-12 79.0 4.9 65 166-234 8-75 (92)
121 KOG0377 Protein serine/threoni 98.4 1.3E-06 2.8E-11 92.1 9.0 134 77-234 464-610 (631)
122 cd05027 S-100B S-100B: S-100B 98.4 9.9E-07 2.2E-11 75.7 6.7 75 74-162 5-81 (88)
123 cd05031 S-100A10_like S-100A10 98.3 6E-07 1.3E-11 78.5 5.2 65 166-234 7-74 (94)
124 PF08414 NADPH_Ox: Respiratory 98.3 5.6E-07 1.2E-11 76.1 4.6 89 52-162 3-94 (100)
125 PLN02964 phosphatidylserine de 98.3 1.4E-06 3.1E-11 100.1 8.5 92 130-235 143-239 (644)
126 KOG0036 Predicted mitochondria 98.3 2.6E-06 5.7E-11 89.8 9.0 152 50-235 22-179 (463)
127 cd00052 EH Eps15 homology doma 98.3 8.9E-07 1.9E-11 71.9 4.3 55 170-234 2-56 (67)
128 PF00036 EF-hand_1: EF hand; 98.3 9.4E-07 2E-11 58.6 3.6 28 168-195 1-28 (29)
129 KOG2562 Protein phosphatase 2 98.3 1.5E-06 3.3E-11 92.9 7.1 136 79-235 280-420 (493)
130 cd05026 S-100Z S-100Z: S-100Z 98.2 3.8E-06 8.2E-11 73.1 8.0 75 74-162 7-83 (93)
131 smart00027 EH Eps15 homology d 98.2 1.4E-06 3.1E-11 76.4 5.3 59 166-234 9-67 (96)
132 KOG4666 Predicted phosphate ac 98.2 4.2E-07 9E-12 92.4 1.2 112 96-236 243-356 (412)
133 cd05031 S-100A10_like S-100A10 98.2 3.4E-06 7.4E-11 73.7 6.6 74 75-162 6-81 (94)
134 smart00027 EH Eps15 homology d 98.2 4.4E-06 9.6E-11 73.3 7.1 69 72-161 5-73 (96)
135 cd05023 S-100A11 S-100A11: S-1 98.2 2.6E-06 5.5E-11 73.3 5.4 65 167-234 9-75 (89)
136 PF13833 EF-hand_8: EF-hand do 98.2 4.1E-06 8.9E-11 64.9 5.8 50 146-195 2-53 (54)
137 cd00213 S-100 S-100: S-100 dom 98.2 2E-06 4.3E-11 74.2 4.2 66 166-234 7-74 (88)
138 cd05029 S-100A6 S-100A6: S-100 98.1 6.6E-06 1.4E-10 70.7 7.0 73 74-162 7-81 (88)
139 cd05025 S-100A1 S-100A1: S-100 98.1 6.7E-06 1.5E-10 71.6 7.2 74 75-162 7-82 (92)
140 PRK05419 putative sulfite oxid 98.1 5.3E-05 1.1E-09 75.8 13.8 127 330-490 68-194 (205)
141 cd00052 EH Eps15 homology doma 98.1 9.6E-06 2.1E-10 65.8 6.5 61 80-161 2-62 (67)
142 cd00213 S-100 S-100: S-100 dom 98.0 1.1E-05 2.4E-10 69.6 6.5 71 73-161 4-80 (88)
143 KOG0041 Predicted Ca2+-binding 98.0 2.9E-06 6.3E-11 80.8 3.1 72 148-234 87-158 (244)
144 KOG2643 Ca2+ binding protein, 98.0 2.1E-05 4.5E-10 83.8 8.8 137 79-236 235-381 (489)
145 cd00051 EFh EF-hand, calcium b 98.0 2.5E-05 5.4E-10 61.5 7.2 60 132-193 2-62 (63)
146 cd05029 S-100A6 S-100A6: S-100 98.0 4.4E-05 9.5E-10 65.6 8.7 66 131-197 11-81 (88)
147 cd05023 S-100A11 S-100A11: S-1 98.0 4.7E-05 1E-09 65.5 8.9 67 130-196 9-81 (89)
148 PF13833 EF-hand_8: EF-hand do 97.9 1.9E-05 4.2E-10 61.1 5.6 52 90-160 1-53 (54)
149 PF13405 EF-hand_6: EF-hand do 97.9 1.5E-05 3.2E-10 54.0 3.5 27 168-194 1-27 (31)
150 KOG4251 Calcium binding protei 97.8 5.2E-05 1.1E-09 74.4 7.0 137 76-235 100-260 (362)
151 cd00051 EFh EF-hand, calcium b 97.8 4.4E-05 9.4E-10 60.1 5.4 61 79-158 2-62 (63)
152 cd05030 calgranulins Calgranul 97.8 0.00011 2.3E-09 63.4 8.1 68 130-197 8-81 (88)
153 PF13202 EF-hand_5: EF hand; P 97.7 3.5E-05 7.7E-10 49.1 3.1 25 169-193 1-25 (25)
154 cd00252 SPARC_EC SPARC_EC; ext 97.7 9.1E-05 2E-09 66.9 7.0 61 128-193 46-106 (116)
155 COG2717 Predicted membrane pro 97.7 0.00048 1E-08 67.8 11.5 124 333-490 71-194 (209)
156 PRK12309 transaldolase/EF-hand 97.6 0.0001 2.2E-09 80.9 6.8 66 149-235 313-381 (391)
157 KOG2643 Ca2+ binding protein, 97.6 3.8E-05 8.1E-10 81.8 3.3 93 141-235 209-310 (489)
158 cd05030 calgranulins Calgranul 97.6 0.00012 2.7E-09 62.9 5.5 71 74-162 5-81 (88)
159 KOG0030 Myosin essential light 97.5 0.00028 6.1E-09 63.8 7.1 101 127-234 8-111 (152)
160 PF00036 EF-hand_1: EF hand; 97.5 0.00015 3.3E-09 48.0 3.7 29 131-161 1-29 (29)
161 KOG0040 Ca2+-binding actin-bun 97.5 0.00038 8.2E-09 83.4 9.3 132 72-234 2248-2393(2399)
162 KOG0041 Predicted Ca2+-binding 97.5 0.00041 8.8E-09 66.5 7.7 101 71-190 93-198 (244)
163 cd05024 S-100A10 S-100A10: A s 97.3 0.001 2.2E-08 56.8 7.4 73 75-162 6-78 (91)
164 PF14658 EF-hand_9: EF-hand do 97.2 0.00061 1.3E-08 54.1 5.1 61 82-160 3-64 (66)
165 COG2375 ViuB Siderophore-inter 97.2 0.076 1.6E-06 54.7 21.4 196 494-768 17-242 (265)
166 KOG0038 Ca2+-binding kinase in 97.2 0.001 2.2E-08 60.4 6.6 98 77-195 74-177 (189)
167 KOG4251 Calcium binding protei 97.1 0.00056 1.2E-08 67.3 4.9 147 80-235 143-305 (362)
168 PRK12309 transaldolase/EF-hand 97.1 0.00087 1.9E-08 73.6 6.9 60 122-195 326-385 (391)
169 KOG0031 Myosin regulatory ligh 97.1 0.0024 5.2E-08 58.9 8.5 91 131-234 33-124 (171)
170 cd05024 S-100A10 S-100A10: A s 96.9 0.0018 4E-08 55.3 5.4 63 168-234 9-71 (91)
171 KOG4065 Uncharacterized conser 96.9 0.0015 3.3E-08 56.8 4.8 65 171-235 71-141 (144)
172 KOG0377 Protein serine/threoni 96.9 0.0022 4.9E-08 68.3 7.0 64 130-195 547-615 (631)
173 PF14658 EF-hand_9: EF-hand do 96.9 0.0032 6.9E-08 50.1 6.1 60 134-195 2-64 (66)
174 PF12763 EF-hand_4: Cytoskelet 96.8 0.0042 9.2E-08 54.9 7.1 68 72-161 5-72 (104)
175 PF14788 EF-hand_10: EF hand; 96.6 0.0061 1.3E-07 45.7 5.8 48 148-195 1-49 (51)
176 PF13405 EF-hand_6: EF-hand do 96.2 0.0037 8E-08 42.2 2.5 26 78-106 1-26 (31)
177 PF13202 EF-hand_5: EF hand; P 96.0 0.0065 1.4E-07 38.7 2.7 25 79-106 1-25 (25)
178 KOG0040 Ca2+-binding actin-bun 95.9 0.024 5.3E-07 68.7 8.6 95 131-234 2254-2356(2399)
179 smart00054 EFh EF-hand, calciu 95.7 0.01 2.2E-07 38.1 2.9 26 169-194 2-27 (29)
180 PF12763 EF-hand_4: Cytoskelet 95.7 0.013 2.8E-07 51.8 4.3 60 131-194 11-70 (104)
181 KOG2562 Protein phosphatase 2 95.7 0.024 5.1E-07 61.6 7.0 90 132-234 227-338 (493)
182 PF10591 SPARC_Ca_bdg: Secrete 95.6 0.0049 1.1E-07 55.5 1.3 61 163-233 50-110 (113)
183 KOG0039 Ferric reductase, NADH 95.6 0.1 2.2E-06 61.8 12.4 210 130-359 18-254 (646)
184 KOG4347 GTPase-activating prot 95.6 0.016 3.4E-07 65.5 5.2 103 71-189 498-612 (671)
185 PF14788 EF-hand_10: EF hand; 95.2 0.046 9.9E-07 41.1 5.0 50 96-161 1-50 (51)
186 PF08021 FAD_binding_9: Sidero 95.1 0.084 1.8E-06 48.0 7.6 92 498-595 1-117 (117)
187 KOG0751 Mitochondrial aspartat 95.1 0.049 1.1E-06 59.3 6.8 97 79-194 110-206 (694)
188 KOG0046 Ca2+-binding actin-bun 94.9 0.053 1.2E-06 59.6 6.5 75 71-162 13-87 (627)
189 KOG0046 Ca2+-binding actin-bun 94.9 0.03 6.6E-07 61.5 4.6 62 168-235 20-81 (627)
190 KOG0169 Phosphoinositide-speci 94.8 0.16 3.4E-06 58.9 10.4 132 76-235 135-270 (746)
191 KOG4666 Predicted phosphate ac 94.8 0.054 1.2E-06 56.1 5.9 101 77-195 259-359 (412)
192 KOG4065 Uncharacterized conser 94.6 0.095 2.1E-06 45.9 6.1 70 80-157 70-142 (144)
193 PF10591 SPARC_Ca_bdg: Secrete 94.6 0.045 9.8E-07 49.3 4.4 61 75-156 52-112 (113)
194 KOG3866 DNA-binding protein of 93.3 0.064 1.4E-06 55.0 3.0 69 169-237 246-322 (442)
195 KOG1029 Endocytic adaptor prot 91.8 0.48 1E-05 54.5 7.7 57 168-234 196-252 (1118)
196 smart00054 EFh EF-hand, calciu 88.7 0.36 7.9E-06 30.5 2.2 25 79-106 2-26 (29)
197 KOG0035 Ca2+-binding actin-bun 87.9 2.2 4.7E-05 51.2 9.2 99 74-191 744-848 (890)
198 PF09279 EF-hand_like: Phospho 86.6 1.5 3.3E-05 36.9 5.4 64 78-159 1-68 (83)
199 KOG3555 Ca2+-binding proteogly 86.1 0.69 1.5E-05 48.5 3.5 58 165-234 248-305 (434)
200 PF09279 EF-hand_like: Phospho 86.0 1.5 3.3E-05 36.9 5.1 62 131-195 1-69 (83)
201 KOG1029 Endocytic adaptor prot 85.1 2.2 4.7E-05 49.4 7.0 64 76-161 194-258 (1118)
202 PLN02952 phosphoinositide phos 84.8 2.6 5.6E-05 49.0 7.7 49 146-195 14-65 (599)
203 PF05042 Caleosin: Caleosin re 80.7 6.4 0.00014 37.9 7.3 60 131-193 97-164 (174)
204 KOG1707 Predicted Ras related/ 80.4 3.8 8.2E-05 46.6 6.6 145 73-235 191-339 (625)
205 PF05042 Caleosin: Caleosin re 79.2 4.9 0.00011 38.6 6.0 29 167-195 96-124 (174)
206 KOG4578 Uncharacterized conser 77.6 1.8 3.8E-05 45.3 2.7 62 132-195 335-398 (421)
207 KOG3555 Ca2+-binding proteogly 74.9 4.9 0.00011 42.5 5.0 63 128-195 248-310 (434)
208 KOG0998 Synaptic vesicle prote 72.7 5.1 0.00011 49.1 5.4 130 73-234 125-340 (847)
209 KOG4347 GTPase-activating prot 72.5 7 0.00015 45.0 6.0 77 148-233 534-612 (671)
210 PF05517 p25-alpha: p25-alpha 68.0 31 0.00067 33.0 8.6 71 79-162 1-71 (154)
211 KOG1955 Ral-GTPase effector RA 67.3 9 0.00019 42.4 5.2 29 166-194 264-292 (737)
212 PF08726 EFhand_Ca_insen: Ca2+ 65.1 6.5 0.00014 31.9 2.8 28 165-193 4-31 (69)
213 KOG0042 Glycerol-3-phosphate d 62.1 14 0.0003 42.0 5.5 73 71-162 587-659 (680)
214 PLN02952 phosphoinositide phos 59.8 44 0.00095 39.2 9.4 85 90-194 13-109 (599)
215 KOG2243 Ca2+ release channel ( 58.5 6.8 0.00015 48.0 2.5 54 172-234 4062-4115(5019)
216 KOG0169 Phosphoinositide-speci 58.2 30 0.00066 40.8 7.6 64 130-195 136-200 (746)
217 PF09069 EF-hand_3: EF-hand; 56.0 21 0.00046 30.6 4.6 62 166-234 2-70 (90)
218 PF00404 Dockerin_1: Dockerin 55.1 11 0.00024 22.9 1.9 17 177-193 1-17 (21)
219 PRK10639 formate dehydrogenase 53.6 1.8E+02 0.0039 29.3 11.7 23 336-358 54-76 (211)
220 KOG4578 Uncharacterized conser 53.5 5.7 0.00012 41.7 0.8 61 168-235 334-394 (421)
221 PF09068 EF-hand_2: EF hand; 52.4 72 0.0016 29.4 7.8 28 167-194 97-124 (127)
222 KOG2243 Ca2+ release channel ( 51.6 16 0.00035 45.0 4.1 54 83-157 4063-4117(5019)
223 PF05517 p25-alpha: p25-alpha 44.6 1.7E+02 0.0038 27.8 9.4 91 133-226 2-98 (154)
224 KOG4403 Cell surface glycoprot 44.2 90 0.0019 34.3 7.9 60 130-195 68-129 (575)
225 KOG1707 Predicted Ras related/ 43.6 20 0.00044 41.0 3.2 88 73-181 311-400 (625)
226 KOG3866 DNA-binding protein of 43.5 47 0.001 34.7 5.5 93 81-193 248-352 (442)
227 PF08726 EFhand_Ca_insen: Ca2+ 41.9 13 0.00029 30.2 1.1 26 77-106 6-31 (69)
228 KOG0042 Glycerol-3-phosphate d 41.2 15 0.00032 41.8 1.7 60 168-235 594-653 (680)
229 KOG0035 Ca2+-binding actin-bun 41.1 27 0.00057 42.3 3.8 68 166-236 746-813 (890)
230 PF14513 DAG_kinase_N: Diacylg 38.1 1.1E+02 0.0024 28.6 6.7 70 147-224 6-82 (138)
231 PF09069 EF-hand_3: EF-hand; 38.1 72 0.0016 27.4 5.0 71 77-159 3-74 (90)
232 cd07313 terB_like_2 tellurium 38.0 64 0.0014 28.1 5.1 85 90-193 12-98 (104)
233 PF13706 PepSY_TM_3: PepSY-ass 38.0 39 0.00085 23.7 2.8 20 335-354 4-23 (37)
234 PF00033 Cytochrom_B_N: Cytoch 37.9 2.2E+02 0.0048 27.4 9.5 26 333-358 44-69 (188)
235 KOG1955 Ral-GTPase effector RA 37.7 36 0.00077 37.9 3.8 60 166-235 230-289 (737)
236 PF01292 Ni_hydr_CYTB: Prokary 36.2 4E+02 0.0086 25.5 11.2 22 336-357 43-64 (182)
237 PF01794 Ferric_reduct: Ferric 35.7 86 0.0019 28.0 5.7 25 434-458 29-54 (125)
238 KOG4070 Putative signal transd 35.3 74 0.0016 29.8 4.9 86 76-177 11-108 (180)
239 PF03929 PepSY_TM: PepSY-assoc 34.9 65 0.0014 21.0 3.2 21 336-356 2-22 (27)
240 PF13172 PepSY_TM_1: PepSY-ass 33.5 61 0.0013 22.1 3.2 25 334-358 4-28 (34)
241 PF05872 DUF853: Bacterial pro 33.1 73 0.0016 35.9 5.3 118 91-233 100-221 (502)
242 KOG3077 Uncharacterized conser 30.9 1.8E+02 0.0039 30.2 7.4 83 75-176 62-145 (260)
243 KOG2871 Uncharacterized conser 30.4 54 0.0012 35.4 3.7 64 165-235 307-370 (449)
244 PRK12446 undecaprenyldiphospho 30.3 60 0.0013 35.6 4.3 25 603-627 2-28 (352)
245 PF14358 DUF4405: Domain of un 30.2 62 0.0014 25.6 3.3 26 332-357 38-63 (64)
246 KOG4826 C-8,7 sterol isomerase 29.9 1.9E+02 0.0041 28.9 6.9 20 337-356 54-73 (229)
247 PF07879 PHB_acc_N: PHB/PHA ac 29.6 67 0.0015 25.5 3.1 50 174-224 10-62 (64)
248 PF05297 Herpes_LMP1: Herpesvi 26.7 21 0.00047 36.8 0.0 15 469-483 170-184 (381)
249 KOG0506 Glutaminase (contains 26.3 1.9E+02 0.0042 32.4 7.0 95 132-228 88-198 (622)
250 TIGR02125 CytB-hydogenase Ni/F 25.9 6.5E+02 0.014 24.8 11.5 25 334-358 47-71 (211)
251 cd06404 PB1_aPKC PB1 domain is 25.4 1.2E+02 0.0025 25.6 4.1 38 147-184 18-76 (83)
252 PF12174 RST: RCD1-SRO-TAF4 (R 25.2 1.3E+02 0.0029 24.5 4.3 50 147-198 7-56 (70)
253 TIGR01848 PHA_reg_PhaR polyhyd 24.7 1.1E+02 0.0024 27.0 4.0 51 174-225 10-63 (107)
254 PF00667 FAD_binding_1: FAD bi 24.4 1.7E+02 0.0037 29.5 6.1 41 494-534 8-54 (219)
255 PF02761 Cbl_N2: CBL proto-onc 23.9 3.3E+02 0.0072 23.2 6.5 64 128-194 5-69 (85)
256 PLN02228 Phosphoinositide phos 22.8 2.5E+02 0.0054 32.9 7.5 66 126-195 20-92 (567)
257 KOG4004 Matricellular protein 22.7 30 0.00065 33.8 0.2 46 147-193 203-248 (259)
258 PF01023 S_100: S-100/ICaBP ty 22.1 2E+02 0.0042 21.1 4.3 28 132-159 8-35 (44)
259 PLN02222 phosphoinositide phos 20.4 2.3E+02 0.0049 33.3 6.6 64 77-159 25-89 (581)
260 PF14358 DUF4405: Domain of un 20.1 2.9E+02 0.0062 21.7 5.4 23 435-457 38-61 (64)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-80 Score=717.65 Aligned_cols=608 Identities=45% Similarity=0.778 Sum_probs=527.1
Q ss_pred ccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCC
Q 047110 147 VDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKR 225 (784)
Q Consensus 147 g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~d 225 (784)
+ |+++||. .. .+.|++++.+|+++|. +||.++.+|+..++......+.....+++..++...++++.|.++.
T Consensus 3 ~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 3 G-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred C-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 7 9999998 33 7899999999999999 9999999999999987665555666688899999999999999999
Q ss_pred CcccccCCCC---------------C----------------CCCCcccchhhHhhhccceeeehhHHHHHHHHHHHHHH
Q 047110 226 GYLEVTNPHK---------------D----------------DLYHEPMSKNEVRFRSYWRRAWIVLFWLLICAVLFTWK 274 (784)
Q Consensus 226 G~i~~~eF~~---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~l~~~~ 274 (784)
|++.++++.. . .+..+...+...+++++|++.+.+++|+.++++++.|+
T Consensus 76 ~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~ 155 (646)
T KOG0039|consen 76 GYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTRRKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWR 155 (646)
T ss_pred ceeeecchhHHHHhchHHHHHHHHHHHHHHhhhccccccccccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHH
Confidence 9999888762 0 01224455567789999999999999999999999999
Q ss_pred HHhccCcchhhhhcchhhhcchhhhhhhhHhHHHHHHhhhhhhhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHH
Q 047110 275 FIQYSHRPAFQVMGYCLSTAKGAAETLKLNMALILLPVSRNTVTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHG 354 (784)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~ar~~~~~~~~n~~ll~l~~~Rn~l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~ 354 (784)
+..|.......++|++++.+++.+..+++|+.++++++|||.++||++.+++..++|+|+.+.||+.+|........+|.
T Consensus 156 ~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~ 235 (646)
T KOG0039|consen 156 FLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHI 235 (646)
T ss_pred HHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHH
Confidence 99988777888899999999999999999999999999999999999658888889999999999999999999999999
Q ss_pred hhhhccccceeeecchhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHHhhccCCCcccccccc
Q 047110 355 GTHLACDFPRIAGCDRVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWARRQSTLLPRSVRHVAG 434 (784)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iRr~~~~~~~~~~~~~~ 434 (784)
++|.++.+..+++.............+ ..+.++++..+..+++|+++++++++|+++|++++||+.
T Consensus 236 w~~~~~~~~~~ih~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~------------ 301 (646)
T KOG0039|consen 236 WLHLVNFFPFLVHGLEYTISLASELFF--LPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRF------------ 301 (646)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcc--cchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHH------------
Confidence 999877665555432221111111112 134556677788899999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcccceeeeeeheeeeehhhhhhheeeeeeeEEEEEeEeeCCCEEEEEE
Q 047110 435 YNTFWYSHHLFVFVYALLFVHGMFLFLTNNPFEKTTWMYIAVPVLLYAGERIYRVVRSGIYEIKNLTPSLYPGKVLSLKM 514 (784)
Q Consensus 435 Ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~~r~~r~~r~~~~~~~v~~~~~~~~~v~~l~l 514 (784)
||.||++|++++++|+++++|+...... .+|+|+++|+.+|++||++|..|. ..+++++++..+++++++|++
T Consensus 302 ~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L~~ 374 (646)
T KOG0039|consen 302 YEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLELIM 374 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEEEE
Confidence 9999999999999999999998754332 689999988999999999999888 477999999999999999999
Q ss_pred ecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCccHHHHHHHHHhhhccC----CCCCEEEEeC
Q 047110 515 QKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQEEMLGAA----KGFPKVYIDG 590 (784)
Q Consensus 515 ~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~----~~~~~v~i~G 590 (784)
++|+.++|+||||++|++|.++.+|||||||+|+|+|++++++||+.||||++|++.+++.+.++. ....++.|||
T Consensus 375 ~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdG 454 (646)
T KOG0039|consen 375 SKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDG 454 (646)
T ss_pred eCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhcccccccccccCceEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999885332211 1378999999
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHH
Q 047110 591 PYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVIT 670 (784)
Q Consensus 591 PyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~ 670 (784)
|||.+..+..++++++|||||+|+||++|++++++.+.+.++..++ .+........++++++|.+|+..+++||.+.+.
T Consensus 455 PYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~ 533 (646)
T KOG0039|consen 455 PYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP-TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLT 533 (646)
T ss_pred CCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc-cccccccceecceeEEEEeccccchHHHHHHHH
Confidence 9999998999999999999999999999999999998765432111 111223446789999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEE
Q 047110 671 EISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGV 750 (784)
Q Consensus 671 ~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V 750 (784)
++.+.+ ..+.+++++|+|+...+.|.++.++.+.|.+.+.+++.|+.+|++...+.|||||+++++++++.++..+++|
T Consensus 534 ~v~~~~-~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgV 612 (646)
T KOG0039|consen 534 EVEEYD-SSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGV 612 (646)
T ss_pred HHHHHH-hcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEE
Confidence 999877 4456899999999988889888888889999888899999999999999999999999999999998777999
Q ss_pred EEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 751 FYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 751 ~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
++|||++|.+++++.|.+.+.+..+.++||+|+|
T Consensus 613 f~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 613 FSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred EEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 9999999999999999998877778999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=3.7e-58 Score=524.91 Aligned_cols=337 Identities=23% Similarity=0.411 Sum_probs=269.8
Q ss_pred hhhcchhhhhhhhHhHHHHHHhhhhh-hhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecc
Q 047110 291 LSTAKGAAETLKLNMALILLPVSRNT-VTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCD 369 (784)
Q Consensus 291 ~~~ar~~~~~~~~n~~ll~l~~~Rn~-l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~ 369 (784)
..++.|+|.+...|+|+++++++||+ +.|++| ++||+++.||||+|+++++++++|++++++ .+ ..
T Consensus 150 ~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG-------~s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~---~~-- 216 (699)
T PLN02631 150 RAFGLRIGYVGHICWAFLFFPVTRASTILPLVG-------LTSESSIKYHIWLGHVSNFLFLVHTVVFLI-YW---AM-- 216 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hh--
Confidence 45788999999999999999999996 999999 999999999999999999999999999973 11 10
Q ss_pred hhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHH
Q 047110 370 RVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVY 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~ 449 (784)
.+.+..... ..+.| ..+++|+++++++++|+++|++++||++ ||+|+++|+++++++
T Consensus 217 ~~~~~~~~~-----w~~~~------~~~~~GviA~v~~~lm~~~Sl~~~RRr~------------YE~F~~~Hillaifi 273 (699)
T PLN02631 217 INKLMETFA-----WNPTY------VPNLAGTIAMVIGIAMWVTSLPSFRRKK------------FELFFYTHHLYGLYI 273 (699)
T ss_pred hchhhhhhh-----ccccc------chHHHHHHHHHHHHHHHHhccHHHHhhh------------hhHHHHHHHHHHHHH
Confidence 111101000 01111 2357899999999999999999999998 999999999998866
Q ss_pred HHHHHHhhhhhhccCCCccccee-eeeeheeeeehhhhhhheeeeeeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEE
Q 047110 450 ALLFVHGMFLFLTNNPFEKTTWM-YIAVPVLLYAGERIYRVVRSGIYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYM 528 (784)
Q Consensus 450 v~~~~H~~~~~~~~~~~~~~~w~-~~~~~~~i~~~~r~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v 528 (784)
+++++|.. ..|. |+.+++++|++||++|.+|.. ...++++++.++++++++++++|+.++++||||+
T Consensus 274 v~~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~~r~~-~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfv 341 (699)
T PLN02631 274 VFYVIHVG-----------DSWFCMILPNIFLFFIDRYLRFLQST-KRSRLVSARILPSDNLELTFSKTPGLHYTPTSIL 341 (699)
T ss_pred HheEEecC-----------CchHHHHHHHHHHHHHHHHHHHHHHh-ceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceE
Confidence 66677742 1232 234567899999999999876 3477888888999999999998778899999999
Q ss_pred EEecCCCCCCcccccccccCCC--CCeEEEEEEecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEE
Q 047110 529 FVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVL 606 (784)
Q Consensus 529 ~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vv 606 (784)
+|++|..+.+|+|||||+|.|+ ++.++++||+.|+||++|.+.+... ..+.++.+|||||.+..+...++++|
T Consensus 342 fL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~-----g~~i~V~VeGPYG~~~~~~~~~~~vV 416 (699)
T PLN02631 342 FLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSS-----IDSLEVSTEGPYGPNSFDVSRHNSLI 416 (699)
T ss_pred EEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcC-----CCeeEEEEECCCCCCCCCcCCCCcEE
Confidence 9999998889999999999984 5789999999999999998875321 12468999999998765567789999
Q ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhc--CCCCcEEE
Q 047110 607 LIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIY--LKQPVIEM 684 (784)
Q Consensus 607 lIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~--~~~~~l~v 684 (784)
+||||+||||++|++++++++.... ..+.++++|+|++|+.+++. |.|+|..+.... ..+.++++
T Consensus 417 lIAGGsGITP~lSiL~~ll~~~~~~------------~~~~~~V~Li~~vR~~~dL~-f~deL~~l~~~~~~l~~~ni~i 483 (699)
T PLN02631 417 LVSGGSGITPFISVIRELIFQSQNP------------STKLPDVLLVCSFKHYHDLA-FLDLIFPLDISVSDISRLNLRI 483 (699)
T ss_pred EEEeCcChHhHHHHHHHHHhccccc------------ccCCCcEEEEEEECCHHHhh-hHHHHhhhccchhhhhcCceEE
Confidence 9999999999999999998654211 11345899999999999995 888887642110 02348999
Q ss_pred EEEEecCCC
Q 047110 685 HNFLSSVYQ 693 (784)
Q Consensus 685 ~i~vT~~~~ 693 (784)
++|+|++.+
T Consensus 484 ~iyVTR~~~ 492 (699)
T PLN02631 484 EAYITREDK 492 (699)
T ss_pred EEEEcCCCC
Confidence 999999644
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=1.3e-56 Score=515.03 Aligned_cols=436 Identities=25% Similarity=0.469 Sum_probs=325.2
Q ss_pred hhhcchhhhhhhhHhHHHHHHhhhhh-hhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecc
Q 047110 291 LSTAKGAAETLKLNMALILLPVSRNT-VTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCD 369 (784)
Q Consensus 291 ~~~ar~~~~~~~~n~~ll~l~~~Rn~-l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~ 369 (784)
..+++|.|.+...|+|+++++++||+ +.+++| +|||+++.||||+|+++++++++|++++++ . |..
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG-------is~e~~i~fHrWlGr~~~llallH~i~~~i-~---w~~-- 219 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVLRGLALFRLLG-------IQFEASVRYHVWLGTSMIFFATVHGASTLF-I---WGI-- 219 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHh--
Confidence 45788999999999999999999996 889999 999999999999999999999999998873 1 111
Q ss_pred hhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHH
Q 047110 370 RVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVY 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~ 449 (784)
.+...+.+.. |. ......++|+++++++++|+++|++++||++ ||+|+++|+++++++
T Consensus 220 ~~~~~~~~~~---------w~-~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~------------YElF~~~H~L~ivfl 277 (722)
T PLN02844 220 SHHIQDEIWK---------WQ-KTGRIYLAGEIALVTGLVIWITSLPQIRRKR------------FEIFYYTHHLYIVFL 277 (722)
T ss_pred hcchhhhhhh---------hc-cCcchhhhHHHHHHHHHHHHHHhhHHHHhhh------------hHHHHHHHHHHHHHH
Confidence 1111000000 10 1122357899999999999999999999998 999999999988877
Q ss_pred HHHHHHhhhhhhccCCCcccceeeeeeheeeeehhhhhhheeeeeeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEE
Q 047110 450 ALLFVHGMFLFLTNNPFEKTTWMYIAVPVLLYAGERIYRVVRSGIYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMF 529 (784)
Q Consensus 450 v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~~r~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~ 529 (784)
+++++|+.. ..+.|+.+++++|++||++|.++.+. ...+++++..+++++++++++|..++|+||||++
T Consensus 278 v~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~ 346 (722)
T PLN02844 278 IFFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIF 346 (722)
T ss_pred HhhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEE
Confidence 778899741 11234556789999999999987653 3445667778899999999988889999999999
Q ss_pred EecCCCCCCcccccccccCC--CCCeEEEEEEecCCccHHHHHHHHHhhhcc-C-CCCCEEEEeCCCCCCCCCCCCCCeE
Q 047110 530 VQCPEISPFEWHPFSLTSGP--ADDFLSVHIRALGDWTYRLYGIFQEEMLGA-A-KGFPKVYIDGPYGASSQDYVKYDVV 605 (784)
Q Consensus 530 l~~p~~~~~~~HPFTIaS~p--~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~-~-~~~~~v~i~GPyG~~~~~~~~~~~v 605 (784)
|++|..+++++|||||+|.| +++.+++.||+.|+||++|.+.+....... . ....++.|+||||.+..+...++++
T Consensus 347 L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~l 426 (722)
T PLN02844 347 MKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSL 426 (722)
T ss_pred EEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeE
Confidence 99999988999999999987 467899999999999999998765431000 0 0124899999999986666678999
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEE
Q 047110 606 LLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMH 685 (784)
Q Consensus 606 vlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~ 685 (784)
++||||+||||++|+++++.+..+.. ....++|+|+|++|+.+++.|..++..++.+......+++++
T Consensus 427 VLIAGGiGITPfLSiLrdl~~~~~~~------------~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~ 494 (722)
T PLN02844 427 LLVAGGIGITPFLSILKEIASQSSSR------------YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQLNLKLK 494 (722)
T ss_pred EEEEcCcCHHHHHHHHHHHHhccccc------------cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhcCceEE
Confidence 99999999999999999998643210 112468999999999999977766554443211112478899
Q ss_pred EEEecCCCCCC------------------c---hh------------hHH-----------HHHH--------Hh-----
Q 047110 686 NFLSSVYQEGD------------------G---RS------------AIL-----------SVIQ--------AL----- 708 (784)
Q Consensus 686 i~vT~~~~~~d------------------~---~~------------~~~-----------~~~~--------~~----- 708 (784)
+|+|++..+.. + +. +.+ ...+ ..
T Consensus 495 iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~ 574 (722)
T PLN02844 495 VFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVK 574 (722)
T ss_pred EEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEeccccccccchh
Confidence 99998654321 0 00 000 0000 00
Q ss_pred -----------------------------------------hhhc--cCcccc--------------CC----CCceeee
Q 047110 709 -----------------------------------------HYAR--TGIDII--------------SK----TPMWTHY 727 (784)
Q Consensus 709 -----------------------------------------~~~~--~~~d~~--------------~g----~~~~~~~ 727 (784)
++++ ...+.. .+ +...+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (722)
T PLN02844 575 MAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKPEEGSMEKRGPVLEEHEIHF 654 (722)
T ss_pred cccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCCCCccccccccccccceeec
Confidence 0000 000000 00 1235678
Q ss_pred c-CCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc-----C---CCceEEEEeeCC
Q 047110 728 S-RPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY-----R---TNTRFVFHKEHF 784 (784)
Q Consensus 728 G-RPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~-----~---~~~~~~~~~E~F 784 (784)
| |||++++++.+.++..+.+++|.||||++|-.+|.+.|+..+. . .++.+.||.=+|
T Consensus 655 g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f 720 (722)
T PLN02844 655 GGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNF 720 (722)
T ss_pred CCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeeccc
Confidence 7 9999999999999998899999999999999999999988654 1 247888998776
No 4
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.6e-56 Score=512.73 Aligned_cols=341 Identities=21% Similarity=0.338 Sum_probs=268.9
Q ss_pred hhhcchhhhhhhhHhHHHHHHhhhhh-hhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecc
Q 047110 291 LSTAKGAAETLKLNMALILLPVSRNT-VTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCD 369 (784)
Q Consensus 291 ~~~ar~~~~~~~~n~~ll~l~~~Rn~-l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~ 369 (784)
-.+|.|+|.+.++++|++++|++||+ +.|++| +|||+++.||||+|+++++++++|++++++ .+ ..
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG-------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i-~~---~~-- 233 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAVG-------LTSESSIKYHIWLGHLVMTLFTSHGLCYII-YW---IS-- 233 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hh--
Confidence 35789999999999999999999996 999999 999999999999999999999999999974 11 11
Q ss_pred hhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHH
Q 047110 370 RVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVY 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~ 449 (784)
.+.+.+.. .| ......+++|+++++++++|+++|++++||++ ||+|+++|+++++++
T Consensus 234 ~~~~~~~~----------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~------------YE~F~~~HiL~~v~~ 290 (702)
T PLN02292 234 MNQVSQML----------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRRF------------FEVFFYTHYLYIVFM 290 (702)
T ss_pred cCchhhhh----------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhcc------------cHhHHHHHHHHHHHH
Confidence 11111100 01 11223468899999999999999999999998 999999999998777
Q ss_pred HHHHHHhhhhhhccCCCcccceeeeeeheeeeehhhhhhheeeeeeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEE
Q 047110 450 ALLFVHGMFLFLTNNPFEKTTWMYIAVPVLLYAGERIYRVVRSGIYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMF 529 (784)
Q Consensus 450 v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~~r~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~ 529 (784)
+++++|.... ...+.++++++|++||++|.++.+ .++++++++.++++++++++++|..+.|+||||++
T Consensus 291 v~~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vf 359 (702)
T PLN02292 291 LFFVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMF 359 (702)
T ss_pred eeeehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEE
Confidence 7778886411 112233567899999999999864 67888899999999999999988888999999999
Q ss_pred EecCCCCCCcccccccccCCC--CCeEEEEEEecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEE
Q 047110 530 VQCPEISPFEWHPFSLTSGPA--DDFLSVHIRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLL 607 (784)
Q Consensus 530 l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvl 607 (784)
+++|..+.+++|||||+|.|. ++.++++||+.|+||++|.+.+.... .....++.++||||.+..+...++++++
T Consensus 360 L~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd---~i~~~~V~VeGPYG~~~~~~~~~~~vvl 436 (702)
T PLN02292 360 VNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSD---QIDRLAVSVEGPYGPASTDFLRHESLVM 436 (702)
T ss_pred EEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCC---ccccceEEEECCccCCccccccCCcEEE
Confidence 999998889999999999874 57899999999999999988753210 0123478999999987655667899999
Q ss_pred EEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHH---HHhcCCCCcEEE
Q 047110 608 IGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEI---SKIYLKQPVIEM 684 (784)
Q Consensus 608 IagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l---~~~~~~~~~l~v 684 (784)
||||+||||++|+++++.++.... ....++++|+|++|+.+++.|..+...++ .+.. ...++++
T Consensus 437 IAGGiGITP~lsil~~L~~~~~~~------------~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~-~~~~~~i 503 (702)
T PLN02292 437 VSGGSGITPFISIIRDLIYTSSTE------------TCKIPKITLICAFKNSSDLSMLDLILPTSGLETELS-SFIDIQI 503 (702)
T ss_pred EEeccCHHHHHHHHHHHHhccccc------------cCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHh-hcCCceE
Confidence 999999999999999998753211 11247899999999999885533333333 1221 2457899
Q ss_pred EEEEecCCCC
Q 047110 685 HNFLSSVYQE 694 (784)
Q Consensus 685 ~i~vT~~~~~ 694 (784)
++|+|++.++
T Consensus 504 ~iyvTr~~~~ 513 (702)
T PLN02292 504 KAFVTREKEA 513 (702)
T ss_pred EEEEeCCCCC
Confidence 9999986543
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-41 Score=340.98 Aligned_cols=383 Identities=21% Similarity=0.270 Sum_probs=252.9
Q ss_pred hhhhHhHHHHHHhhhhhhhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecchhhHH-HHhh
Q 047110 300 TLKLNMALILLPVSRNTVTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCDRVLFQ-QTLA 378 (784)
Q Consensus 300 ~~~~n~~ll~l~~~Rn~l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~~~~~~-~~~~ 378 (784)
+....|.++++++.|-. |+.. | +-+.|+.+++|||+|.+++++.+.|-+...+.++. ... .-.+. ..+.
T Consensus 47 iaL~~msl~~~LA~R~~--~iE~--~---~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~--~~~-~l~~k~a~v~ 116 (438)
T COG4097 47 IALALMSLIFLLATRLP--LIEA--W---FNGLDKIYRFHKYTSILAILLLLAHNFILFIGNWL--TLQ-LLNFKPAPVK 116 (438)
T ss_pred HHHHHHHHHHHHHhchH--HHhh--h---hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcch--hcc-cccccccccc
Confidence 44467889999999943 5553 1 13789999999999999999999999886533211 000 00000 0000
Q ss_pred hccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 047110 379 SGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVYALLFVHGMF 458 (784)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~v~~~~H~~~ 458 (784)
.... ..|.-...+ |-++.-+ ++.+.+.+..|- ++ .||.|.+.|.++++.|++..+|...
T Consensus 117 ~~l~----~~~~s~~el-G~~~~yi---~~~lllV~~l~~-----~i--------~Ye~WR~~H~lm~vvYilg~~H~~~ 175 (438)
T COG4097 117 PSLA----GMWRSAKEL-GEWSAYI---FIGLLLVWRLWL-----NI--------GYENWRIAHRLMAVVYILGLLHSYG 175 (438)
T ss_pred hhhh----hhhHHHHHH-HHHHHHH---HHHHHHHHHHHH-----hc--------CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000011 1112211 222222222222 23 3999999999999999999999774
Q ss_pred hhhccCCCcccc-eeee---eeheeeeehhhhhhheeeeeeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCC
Q 047110 459 LFLTNNPFEKTT-WMYI---AVPVLLYAGERIYRVVRSGIYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPE 534 (784)
Q Consensus 459 ~~~~~~~~~~~~-w~~~---~~~~~i~~~~r~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~ 534 (784)
..-...|..+.. |.-. +++...++.....+..+.+.+..+|+.++..+.++++++....+++.++|||+++|.++.
T Consensus 176 l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~ 255 (438)
T COG4097 176 LLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEI 255 (438)
T ss_pred hcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEecc
Confidence 322222322222 3211 111112222223344466677888888888888899998887777889999999999997
Q ss_pred CC-CCcccccccccCCCCCeEEEEEEecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCC
Q 047110 535 IS-PFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIG 613 (784)
Q Consensus 535 ~~-~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~G 613 (784)
.. ....|||||+++.+.+.++|.||+.||+|+.|.+.+ ++|.++.+|||||.+..+.. -++.|+||||||
T Consensus 256 ~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL--------k~G~k~~vdGPYG~F~~~~g-~~~QVWIAGGIG 326 (438)
T COG4097 256 EEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL--------KVGTKLEVDGPYGKFDFERG-LNTQVWIAGGIG 326 (438)
T ss_pred ccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc--------cCCceEEEecCcceeecccC-CcccEEEecCcC
Confidence 64 467999999999888899999999999999998753 68999999999999864322 234999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCC
Q 047110 614 ATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQ 693 (784)
Q Consensus 614 Itp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~ 693 (784)
|||++|+++.+..+. ..+.|+|++++|+.++. .|.++|+.+.+.. +++.+|+--++.
T Consensus 327 ITPFis~l~~l~~~~-----------------s~~~V~L~Y~~~n~e~~-~y~~eLr~~~qkl---~~~~lHiiDSs~-- 383 (438)
T COG4097 327 ITPFISMLFTLAERK-----------------SDPPVHLFYCSRNWEEA-LYAEELRALAQKL---PNVVLHIIDSSK-- 383 (438)
T ss_pred cchHHHHHHhhcccc-----------------cCCceEEEEEecCCchh-HHHHHHHHHHhcC---CCeEEEEecCCC--
Confidence 999999999988743 35789999999999998 7899999998843 567776622111
Q ss_pred CCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCC
Q 047110 694 EGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRT 773 (784)
Q Consensus 694 ~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~ 773 (784)
|+ --+.+++.+. .+. +..-.||.|||++|++++++.+++.+.+
T Consensus 384 --~g-------------------------------~l~~e~ler~--~~~-~~~~sv~fCGP~~m~dsL~r~l~~~~~~- 426 (438)
T COG4097 384 --DG-------------------------------YLDQEDLERY--PDR-PRTRSVFFCGPIKMMDSLRRDLKKQNVP- 426 (438)
T ss_pred --CC-------------------------------ccCHHHhhcc--ccc-cCcceEEEEcCHHHHHHHHHHHHHcCCC-
Confidence 11 0111111110 011 1123699999999999999999987533
Q ss_pred CceEEEEeeCC
Q 047110 774 NTRFVFHKEHF 784 (784)
Q Consensus 774 ~~~~~~~~E~F 784 (784)
--++|+|.|
T Consensus 427 --i~~~h~E~F 435 (438)
T COG4097 427 --ITNFHYEHF 435 (438)
T ss_pred --HHHHHHHhc
Confidence 228898887
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=1.8e-31 Score=271.34 Aligned_cols=204 Identities=32% Similarity=0.570 Sum_probs=165.4
Q ss_pred EeEeeC-CCEEEEEEecCCCceecCCcEEEEecCCC-CCCcccccccccCCCC--CeEEEEEEecCCccHHHHHHHHHhh
Q 047110 501 TPSLYP-GKVLSLKMQKPEGFRYRAGMYMFVQCPEI-SPFEWHPFSLTSGPAD--DFLSVHIRALGDWTYRLYGIFQEEM 576 (784)
Q Consensus 501 ~~~~~~-~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~-~~~~~HPFTIaS~p~~--~~l~l~Ir~~g~~T~~L~~~~~~~~ 576 (784)
+++.++ +++++|+++.|..+.|+||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|+++...+...
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~- 81 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS- 81 (210)
T ss_pred EEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC-
Confidence 466677 99999999988788999999999999988 7789999999999976 899999999966676666554321
Q ss_pred hccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEe
Q 047110 577 LGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVT 656 (784)
Q Consensus 577 ~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~ 656 (784)
.....+.++.|+||||.+..+...++++||||||+||||++|+++++...... ....++++|+|++
T Consensus 82 -~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~-------------~~~~~~v~l~w~~ 147 (210)
T cd06186 82 -PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK-------------TSRTRRVKLVWVV 147 (210)
T ss_pred -cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-------------cCCccEEEEEEEE
Confidence 01236789999999999874466789999999999999999999999876421 1135789999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH
Q 047110 657 REQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF 736 (784)
Q Consensus 657 R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~ 736 (784)
|+.+++.||.++|.+..+.. ... ++++|+|+
T Consensus 148 r~~~~~~~~~~~l~~~~~~~--~~~-~~~i~~T~---------------------------------------------- 178 (210)
T cd06186 148 RDREDLEWFLDELRAAQELE--VDG-EIEIYVTR---------------------------------------------- 178 (210)
T ss_pred CCHHHhHHHHHHHHhhhhcc--CCc-eEEEEEee----------------------------------------------
Confidence 99999889999997622222 111 56777761
Q ss_pred HHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 737 SKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 737 ~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
|++|||++|++++++.+.+ .+...+.+|+|.|
T Consensus 179 -------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~~~e~f 210 (210)
T cd06186 179 -------------VVVCGPPGLVDDVRNAVAK---KGGTGVEFHEESF 210 (210)
T ss_pred -------------EEEECchhhccHHHHHHhh---cCCCceEEEeecC
Confidence 9999999999999999987 3457899999998
No 7
>PRK08051 fre FMN reductase; Validated
Probab=99.96 E-value=9.9e-29 Score=254.80 Aligned_cols=223 Identities=18% Similarity=0.211 Sum_probs=168.0
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCC--ccHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGD--WTYRLYGI 571 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~--~T~~L~~~ 571 (784)
.+++|.+++.++++++.+++..+..+.|+||||+.|++|.. +.|||||+|.|. ++.++|+||..++ .+..+...
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46788899999999999999877778999999999999864 679999999984 6889999999765 34444322
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAY 651 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 651 (784)
.++|+++.|+||||.+..+....+++||||||+||||++++++++.... ..++++
T Consensus 80 --------l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-----------------~~~~v~ 134 (232)
T PRK08051 80 --------ILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-----------------PNRPIT 134 (232)
T ss_pred --------cCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-----------------CCCcEE
Confidence 3589999999999998764445678999999999999999999988653 346799
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCC
Q 047110 652 LYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPD 731 (784)
Q Consensus 652 liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd 731 (784)
|+|++|+.+++ +|.++|.++++.. .+++++..+++..+... + ..|+..
T Consensus 135 l~~g~r~~~~~-~~~~el~~l~~~~---~~~~~~~~~~~~~~~~~-----------------------~-----~~g~v~ 182 (232)
T PRK08051 135 LYWGGREEDHL-YDLDELEALALKH---PNLHFVPVVEQPEEGWQ-----------------------G-----KTGTVL 182 (232)
T ss_pred EEEEeccHHHh-hhhHHHHHHHHHC---CCcEEEEEeCCCCCCcc-----------------------c-----ceeeeh
Confidence 99999999998 8999999998764 35666555543211100 0 112221
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHH-HhcccCCCceEEEEeeCC
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLC-TTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~-~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+... ...+..||+|||++|++++++.+ .+.+ .+.-++|.|.|
T Consensus 183 -~~l~~~~~---~~~~~~vyicGp~~m~~~v~~~l~~~~G---~~~~~i~~e~f 229 (232)
T PRK08051 183 -TAVMQDFG---SLAEYDIYIAGRFEMAKIARELFCRERG---AREEHLFGDAF 229 (232)
T ss_pred -HHHHhhcc---CcccCEEEEECCHHHHHHHHHHHHHHcC---CCHHHeecccc
Confidence 12222111 11234699999999999999999 7753 45568899987
No 8
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.96 E-value=1.2e-28 Score=253.10 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=170.1
Q ss_pred EEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEec--CCccHHHHHHHHH
Q 047110 498 KNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRAL--GDWTYRLYGIFQE 574 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~~~~ 574 (784)
+|++++.+++++++++++.|..+.|+||||+.|.+|.. .+|||||+|.|. ++.++|+||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~--- 75 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEE--- 75 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHh---
Confidence 57788899999999999987778999999999999864 589999999987 68999999988 6688877753
Q ss_pred hhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEE
Q 047110 575 EMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYW 654 (784)
Q Consensus 575 ~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW 654 (784)
.++|+++.|.||||.+......++++||||||+||||++|+++++.... ..++++|+|
T Consensus 76 -----l~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-----------------~~~~v~l~~ 133 (224)
T cd06189 76 -----LKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-----------------SKRPIHLYW 133 (224)
T ss_pred -----ccCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-----------------CCCCEEEEE
Confidence 2579999999999998764445789999999999999999999988653 246799999
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHH
Q 047110 655 VTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFN 734 (784)
Q Consensus 655 ~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~ 734 (784)
++|+.+++ ++.++|+++++.. .+++++.++++..+.... ..|+ +.+
T Consensus 134 ~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~~~~g----------------------------~~g~--v~~ 179 (224)
T cd06189 134 GARTEEDL-YLDELLEAWAEAH---PNFTYVPVLSEPEEGWQG----------------------------RTGL--VHE 179 (224)
T ss_pred ecCChhhc-cCHHHHHHHHHhC---CCeEEEEEeCCCCcCCcc----------------------------cccc--HHH
Confidence 99999998 7889999988754 457776666653211100 0011 111
Q ss_pred HHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 735 VFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 735 i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
. +.+.. ......||+|||++|++++++.+.+.+ .+.-++|.|.|
T Consensus 180 ~---l~~~~~~~~~~~v~vCGp~~m~~~~~~~l~~~G---~~~~~i~~e~f 224 (224)
T cd06189 180 A---VLEDFPDLSDFDVYACGSPEMVYAARDDFVEKG---LPEENFFSDAF 224 (224)
T ss_pred H---HHhhccCccccEEEEECCHHHHHHHHHHHHHcC---CCHHHcccCCC
Confidence 1 11111 112356999999999999999998864 45678999988
No 9
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.96 E-value=2.8e-28 Score=253.62 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=180.4
Q ss_pred hhhhhhhee----eeeeeEEEEEeEeeCCCEEEEEEecCCC-ceecCCcEEEEecCCCCCCcccccccccCCC--CCeEE
Q 047110 483 GERIYRVVR----SGIYEIKNLTPSLYPGKVLSLKMQKPEG-FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLS 555 (784)
Q Consensus 483 ~~r~~r~~r----~~~~~~~v~~~~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~ 555 (784)
+|+.+|.++ .....++|++++.+++++.+++++.+.. ..|+||||+.|.+|..+...+|||||+|.|. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 355666543 3345788999999999999999997654 4799999999999765556789999999986 78999
Q ss_pred EEEEec--CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhc
Q 047110 556 VHIRAL--GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEF 633 (784)
Q Consensus 556 l~Ir~~--g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~ 633 (784)
|+||.. |.+|..|.+. .++|+++.|+||||.+..+...+++++|||||+||||++|+++++....
T Consensus 82 ~~ik~~~~G~~s~~l~~~--------~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----- 148 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNH--------LAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----- 148 (243)
T ss_pred EEEEEcCCCcchhHHHhc--------CCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-----
Confidence 999998 7788877653 2579999999999997654444789999999999999999999987643
Q ss_pred ccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhcc
Q 047110 634 DQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYART 713 (784)
Q Consensus 634 ~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~ 713 (784)
..+++.++|++|+.+++ ++.++|+++.+.. +.++++.++|+. .
T Consensus 149 ------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~---~~~~~~~~~s~~-----~---------------- 191 (243)
T cd06216 149 ------------PTADVVLLYYARTREDV-IFADELRALAAQH---PNLRLHLLYTRE-----E---------------- 191 (243)
T ss_pred ------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC---CCeEEEEEEcCC-----c----------------
Confidence 24679999999999988 8999999987643 457877777642 0
Q ss_pred CccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 714 GIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 714 ~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
..||.+.. .+++..... ....||+|||++|++++++.+.+. |.+ -.+|.|.|
T Consensus 192 ------------~~g~~~~~-~l~~~~~~~--~~~~vyvcGp~~m~~~~~~~l~~~---Gv~-~~i~~e~F 243 (243)
T cd06216 192 ------------LDGRLSAA-HLDAVVPDL--ADRQVYACGPPGFLDAAEELLEAA---GLA-DRLHTERF 243 (243)
T ss_pred ------------cCCCCCHH-HHHHhccCc--ccCeEEEECCHHHHHHHHHHHHHC---CCc-cceeeccC
Confidence 01344322 233322211 234799999999999999999885 445 67999988
No 10
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.96 E-value=2.2e-28 Score=254.07 Aligned_cols=228 Identities=21% Similarity=0.280 Sum_probs=173.0
Q ss_pred EEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCC-CCCcccccccccCCCCCeEEEEEEec--CCccHHHHHHHHHh
Q 047110 499 NLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEI-SPFEWHPFSLTSGPADDFLSVHIRAL--GDWTYRLYGIFQEE 575 (784)
Q Consensus 499 v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~-~~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~~L~~~~~~~ 575 (784)
|++++.+++++++++++.|..+.|+||||+.|++|.. +...+|||||+|.|.++.++|+||.. |..|+.|.++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l---- 77 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL---- 77 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC----
Confidence 5677888999999999987778899999999999876 56688999999999888999999976 7788877543
Q ss_pred hhccCCCCCEEEEe-CCCCCCCCCCC-CCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 576 MLGAAKGFPKVYID-GPYGASSQDYV-KYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 576 ~~~~~~~~~~v~i~-GPyG~~~~~~~-~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
.+|+.+.+. ||+|.+..+.. ..+++||||||+||||++++++++.... ..++++|+
T Consensus 78 -----~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-----------------~~~~v~l~ 135 (241)
T cd06195 78 -----KPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-----------------RFDKIVLV 135 (241)
T ss_pred -----CCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-----------------CCCcEEEE
Confidence 579999999 99999865433 4689999999999999999999987533 34689999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ ++.++|+++.+.. ...++++.++++...... ..||.+-.
T Consensus 136 ~~~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~s~~~~~~~-----------------------------~~g~v~~~ 183 (241)
T cd06195 136 HGVRYAEEL-AYQDEIEALAKQY--NGKFRYVPIVSREKENGA-----------------------------LTGRIPDL 183 (241)
T ss_pred EccCCHHHh-hhHHHHHHHHhhc--CCCEEEEEEECcCCccCC-----------------------------CceEhHHh
Confidence 999999999 7999999987652 346888777775322110 01222110
Q ss_pred ---HHHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhcccCC---CceEEEEeeCC
Q 047110 734 ---NVFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTFSYRT---NTRFVFHKEHF 784 (784)
Q Consensus 734 ---~i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~---~~~~~~~~E~F 784 (784)
+.+.+..... ..+...||+|||++|++++++.+.+.+.+. ...-++|.|+|
T Consensus 184 l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 184 IESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVEKY 241 (241)
T ss_pred hhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEecC
Confidence 0111111111 113457999999999999999998875431 12279999998
No 11
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.96 E-value=6.1e-28 Score=251.74 Aligned_cols=231 Identities=18% Similarity=0.234 Sum_probs=178.4
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCC--CCcccccccccCCCCCeEEEEEEec--CCccH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEIS--PFEWHPFSLTSGPADDFLSVHIRAL--GDWTY 566 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~--~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~ 566 (784)
+..++|++++.+++++.+|++..+.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 35677888999999999999987653 68999999999997543 4578999999999878999999988 77887
Q ss_pred HHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 047110 567 RLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKG 646 (784)
Q Consensus 567 ~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (784)
.|.+. .++|+++.|.||||.+..+...+++++|||||+||||++++++++.... .
T Consensus 86 ~l~~~--------~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~-----------------~ 140 (247)
T cd06184 86 YLHDN--------VKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG-----------------P 140 (247)
T ss_pred HHHhc--------CCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-----------------C
Confidence 77652 2589999999999998764446789999999999999999999988642 2
Q ss_pred ccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceee
Q 047110 647 PLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTH 726 (784)
Q Consensus 647 ~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~ 726 (784)
.++++|+|++|+.+++ +|.++|+++.+.. .++++++++++....... .....
T Consensus 141 ~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~~~~~------------------------~~~~~ 192 (247)
T cd06184 141 GRPVTFIHAARNSAVH-AFRDELEELAARL---PNLKLHVFYSEPEAGDRE------------------------EDYDH 192 (247)
T ss_pred CCcEEEEEEcCchhhH-HHHHHHHHHHhhC---CCeEEEEEECCCCccccc------------------------ccccc
Confidence 4679999999999998 7899999987653 468888888764221100 00123
Q ss_pred ecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 727 YSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 727 ~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.||.+.+.+.+ . ....+..||+|||++|++++++.+.+.+ .+.-.+|.|.|
T Consensus 193 ~g~~~~~~l~~-~---~~~~~~~v~icGp~~m~~~v~~~l~~~G---~~~~~i~~e~f 243 (247)
T cd06184 193 AGRIDLALLRE-L---LLPADADFYLCGPVPFMQAVREGLKALG---VPAERIHYEVF 243 (247)
T ss_pred cCccCHHHHhh-c---cCCCCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeeecc
Confidence 36666443322 1 1123457999999999999999998753 45568899987
No 12
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.96 E-value=6.9e-28 Score=249.63 Aligned_cols=225 Identities=17% Similarity=0.252 Sum_probs=171.0
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCC------ceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEec--CCcc
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEG------FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRAL--GDWT 565 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~------~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~--g~~T 565 (784)
+.++|++++.+++++++++++.|.. +.|+||||+.|.+|+. .++|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3577889999999999999998754 6899999999999854 3689999999987 67899999986 6677
Q ss_pred HHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 047110 566 YRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPK 645 (784)
Q Consensus 566 ~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~ 645 (784)
..|.+. .++|+++.|.||||.+..+....+++||||||+||||++++++++....
T Consensus 80 ~~l~~~--------~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~----------------- 134 (236)
T cd06210 80 TYLETR--------AKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG----------------- 134 (236)
T ss_pred hhhhhC--------cCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-----------------
Confidence 776652 2589999999999998654445678999999999999999999987543
Q ss_pred CccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCcee
Q 047110 646 GPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWT 725 (784)
Q Consensus 646 ~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~ 725 (784)
..++++|+|++|+.+++ ++.++|+++.+.. .+++++..+++.......
T Consensus 135 ~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~~~~~---------------------------- 182 (236)
T cd06210 135 EPQEARLFFGVNTEAEL-FYLDELKRLADSL---PNLTVRICVWRPGGEWEG---------------------------- 182 (236)
T ss_pred CCceEEEEEecCCHHHh-hhHHHHHHHHHhC---CCeEEEEEEcCCCCCcCC----------------------------
Confidence 23679999999999998 7899999998764 368877777653111000
Q ss_pred eecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 726 HYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 726 ~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
..|+ +.+.+.+..... .....||+|||++|++++++.+++.+ .+.-.+|.|.|
T Consensus 183 ~~g~--~~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~G---~~~~~i~~E~f 235 (236)
T cd06210 183 YRGT--VVDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREAG---VPDEQVYLEKF 235 (236)
T ss_pred ccCc--HHHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 0122 222333222111 12346999999999999999998854 34457888987
No 13
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.96 E-value=7.1e-28 Score=248.82 Aligned_cols=225 Identities=19% Similarity=0.272 Sum_probs=171.0
Q ss_pred eEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYG 570 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~ 570 (784)
+++|++++.++++++++++..+. .+.|+||||+.|++|+.. ++|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 56788899999999999998644 578999999999998653 7899999999875 8899999997 556776664
Q ss_pred HHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEE
Q 047110 571 IFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKA 650 (784)
Q Consensus 571 ~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 650 (784)
. .++|+++.|.||||.+......++++||||||+||||++++++++.... ..+++
T Consensus 80 ~--------l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-----------------~~~~v 134 (232)
T cd06212 80 G--------LAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-----------------SDRPV 134 (232)
T ss_pred c--------CCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-----------------CCCcE
Confidence 2 2579999999999998764445789999999999999999999988653 24679
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCC
Q 047110 651 YLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRP 730 (784)
Q Consensus 651 ~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRP 730 (784)
+|+|++|+.+++ ++.++|+++.+.. .+++++..+++...+ +.. .+ ..|+
T Consensus 135 ~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~~-~~~--------------------~~-----~~g~- 183 (232)
T cd06212 135 RFFYGARTARDL-FYLEEIAALGEKI---PDFTFIPALSESPDD-EGW--------------------SG-----ETGL- 183 (232)
T ss_pred EEEEeccchHHh-ccHHHHHHHHHhC---CCEEEEEEECCCCCC-CCC--------------------cC-----Cccc-
Confidence 999999999998 6789999888753 357766666653211 000 00 0122
Q ss_pred ChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 731 DWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 731 d~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+.+..... .+..||+|||++|++++.+.+.+.+ .+.-++|.|.|
T Consensus 184 -~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~G---~~~~~i~~e~f 231 (232)
T cd06212 184 -VTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMSG---VPPDQIFYDKF 231 (232)
T ss_pred -HHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 233333322221 2346999999999999999998864 45678999987
No 14
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.96 E-value=1.1e-27 Score=246.59 Aligned_cols=222 Identities=18% Similarity=0.268 Sum_probs=170.9
Q ss_pred eEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIF 572 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~ 572 (784)
+++|++++.++++++++++..+..+.|+||||+.|++|... .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~- 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGA- 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhc-
Confidence 46788889999999999999877778999999999998654 6899999999874 7899999987 7788877653
Q ss_pred HHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEE
Q 047110 573 QEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYL 652 (784)
Q Consensus 573 ~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~l 652 (784)
.++|+++.|+||||.+..+ ...+++||||||+||||++++++++.... ..+++++
T Consensus 79 -------l~~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~-----------------~~~~i~l 133 (227)
T cd06213 79 -------DRTGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG-----------------TKRDVTL 133 (227)
T ss_pred -------CCCCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC-----------------CCCcEEE
Confidence 2579999999999998753 34579999999999999999999987643 3467999
Q ss_pred EEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCC-C
Q 047110 653 YWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRP-D 731 (784)
Q Consensus 653 iW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRP-d 731 (784)
+|++|+.+++ ++.++|+++++.. ..+++++.++++..+..+ ..|++ .
T Consensus 134 ~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~s~~~~~~~-----------------------------~~g~~g~ 181 (227)
T cd06213 134 LFGARTQRDL-YALDEIAAIAARW--RGRFRFIPVLSEEPADSS-----------------------------WKGARGL 181 (227)
T ss_pred EEeeCCHHHh-ccHHHHHHHHHhc--cCCeEEEEEecCCCCCCC-----------------------------ccCCccc
Confidence 9999999998 7889999988653 346777666665321100 01221 2
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+.+.. .....||+|||++|++++++.+.+.+ .+.-.+|.|.|
T Consensus 182 v~~~l~~~~----~~~~~v~~CGp~~~~~~~~~~l~~~G---~~~~~i~~e~f 227 (227)
T cd06213 182 VTEHIAEVL----LAATEAYLCGPPAMIDAAIAVLRALG---IAREHIHADRF 227 (227)
T ss_pred HHHHHHhhc----cCCCEEEEECCHHHHHHHHHHHHHcC---CCHHHEeccCC
Confidence 223333222 12346999999999999999998854 45567888987
No 15
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.96 E-value=1e-27 Score=247.74 Aligned_cols=227 Identities=13% Similarity=0.141 Sum_probs=169.8
Q ss_pred EEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHHHHhh
Q 047110 500 LTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIFQEEM 576 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~ 576 (784)
++++.+++++++++++.+..+.|+||||+.|++|+.+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~----- 74 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDN----- 74 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhc-----
Confidence 4567889999999999877788999999999998754 6799999999875 7899999987 7788877653
Q ss_pred hccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEe
Q 047110 577 LGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVT 656 (784)
Q Consensus 577 ~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~ 656 (784)
.++++++.|+||||.+.......+++||||||+||||++|+++++..... ....+++|+|++
T Consensus 75 ---~~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~---------------~~~~~v~l~~~~ 136 (232)
T cd06190 75 ---LEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY---------------LSDRPVDLFYGG 136 (232)
T ss_pred ---CCCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc---------------CCCCeEEEEEee
Confidence 24789999999999987544456899999999999999999999886521 134789999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH
Q 047110 657 REQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF 736 (784)
Q Consensus 657 R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~ 736 (784)
|+.+++ .+.++|+++.+.. ..++++..+++........ .....|+. .+.+
T Consensus 137 r~~~~~-~~~~el~~l~~~~---~~~~~~~~~s~~~~~~~~~------------------------~~~~~g~v--~~~l 186 (232)
T cd06190 137 RTPSDL-CALDELSALVALG---ARLRVTPAVSDAGSGSAAG------------------------WDGPTGFV--HEVV 186 (232)
T ss_pred cCHHHH-hhHHHHHHHHHhC---CCEEEEEEeCCCCCCcCCC------------------------ccCCcCcH--HHHH
Confidence 999998 7899999988753 4677776666432110000 00011332 2333
Q ss_pred HHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 737 SKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 737 ~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.+..... ..+..||+|||++|++++++.+.+.+. .+.-++|.|.|
T Consensus 187 ~~~~~~~-~~~~~vyiCGp~~m~~~v~~~l~~~g~--~~~~~i~~e~f 231 (232)
T cd06190 187 EATLGDR-LAEFEFYFAGPPPMVDAVQRMLMIEGV--VPFDQIHFDRF 231 (232)
T ss_pred HhhccCC-ccccEEEEECCHHHHHHHHHHHHHhCC--CChHheeeccc
Confidence 3332221 124579999999999999999987531 23568899987
No 16
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.96 E-value=1.2e-27 Score=247.95 Aligned_cols=227 Identities=19% Similarity=0.193 Sum_probs=173.1
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCC--ceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEec--CCccHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEG--FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRAL--GDWTYRLY 569 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~--g~~T~~L~ 569 (784)
+.++|++++.+++++..++++.|.. ..|+||||+.|++|... +.|||||+|.|. ++.++|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 5688899999999999999998765 48999999999998653 689999999986 57899999987 77888775
Q ss_pred HHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccE
Q 047110 570 GIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLK 649 (784)
Q Consensus 570 ~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (784)
+. .++|+++.|.||+|.+.......+++||||||+||||++|+++++.... ..++
T Consensus 85 ~~--------l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~-----------------~~~~ 139 (238)
T cd06211 85 KQ--------LKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG-----------------DTRK 139 (238)
T ss_pred hc--------CCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-----------------CCCc
Confidence 32 2579999999999998754444589999999999999999999987653 2367
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecC
Q 047110 650 AYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSR 729 (784)
Q Consensus 650 v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GR 729 (784)
+.|+|++|+.+++ ++.++|+++++.. .+++++..+++.... +.. .| ..||
T Consensus 140 v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~~-~~~--------------------~~-----~~g~ 189 (238)
T cd06211 140 ITLFFGARTRAEL-YYLDEFEALEKDH---PNFKYVPALSREPPE-SNW--------------------KG-----FTGF 189 (238)
T ss_pred EEEEEecCChhhh-ccHHHHHHHHHhC---CCeEEEEEECCCCCC-cCc--------------------cc-----ccCc
Confidence 9999999999998 8999999988754 357766666653211 100 00 1133
Q ss_pred CChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 730 PDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 730 Pd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+.+..... .++..||+|||++|++++.+.+.+.+ .+.-.+|.|.|
T Consensus 190 --v~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~G---v~~~~i~~e~F 238 (238)
T cd06211 190 --VHDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQGR---LFERDIYYEKF 238 (238)
T ss_pred --HHHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHcC---CCHHHccccCC
Confidence 223444433211 12346999999999999999998864 45567899988
No 17
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.96 E-value=1.2e-27 Score=246.56 Aligned_cols=221 Identities=17% Similarity=0.235 Sum_probs=171.6
Q ss_pred eEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEec--CCccHHHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRAL--GDWTYRLYGI 571 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~~L~~~ 571 (784)
.++|++++.+++++++++++.|. .+.|+||||+.|++|+.. .+|||||+|.|+++.++|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57888999999999999999876 678999999999998653 68999999999888999999986 6678777652
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAY 651 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 651 (784)
.++|+.+.|.||+|.+..+ ...++++|||||+||||++|+++++.... ..++++
T Consensus 81 --------l~~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~-----------------~~~~v~ 134 (228)
T cd06209 81 --------AQPGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG-----------------SAHPVH 134 (228)
T ss_pred --------cCCCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC-----------------CCCcEE
Confidence 2579999999999998653 33478999999999999999999987643 346799
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCC
Q 047110 652 LYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPD 731 (784)
Q Consensus 652 liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd 731 (784)
|+|++|+.+++ ++.++|+++.+.. .++++++++++... ... ..|+
T Consensus 135 l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~s~~~~-~~~----------------------------~~g~-- 179 (228)
T cd06209 135 LVYGVTRDADL-VELDRLEALAERL---PGFSFRTVVADPDS-WHP----------------------------RKGY-- 179 (228)
T ss_pred EEEecCCHHHh-ccHHHHHHHHHhC---CCeEEEEEEcCCCc-cCC----------------------------CcCC--
Confidence 99999999998 6889999988764 46888888775321 000 0011
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+.+... ...+..||+|||++|++++++.+.+. |.+..++|.|.|
T Consensus 180 v~~~~~~~~~--~~~~~~v~icGp~~m~~~~~~~l~~~---G~~~~~i~~E~F 227 (228)
T cd06209 180 VTDHLEAEDL--NDGDVDVYLCGPPPMVDAVRSWLDEQ---GIEPANFYYEKF 227 (228)
T ss_pred ccHHHHHhhc--cCCCcEEEEeCCHHHHHHHHHHHHHc---CCCHHHEeeecc
Confidence 2223322211 11245699999999999999999875 445678999987
No 18
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.96 E-value=9e-28 Score=247.89 Aligned_cols=225 Identities=18% Similarity=0.180 Sum_probs=170.5
Q ss_pred EEEEeEeeCCCEEEEEEecCCC--ceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEec--CCccHHHHHHHH
Q 047110 498 KNLTPSLYPGKVLSLKMQKPEG--FRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRAL--GDWTYRLYGIFQ 573 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~~L~~~~~ 573 (784)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|.||.. |.+|..|.+.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~-- 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREH-- 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhc--
Confidence 4677888999999999987653 589999999999875555578999999998778899999988 6678877642
Q ss_pred HhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 574 EEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 574 ~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
.++|+++.|+||||.+..+....+++||||||+||||++|+++++.... ..++++|+
T Consensus 80 ------~~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-----------------~~~~v~l~ 136 (231)
T cd06191 80 ------IQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-----------------PESDFTLI 136 (231)
T ss_pred ------CCCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-----------------CCCCEEEE
Confidence 2589999999999998654445679999999999999999999987543 24679999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCCh-
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDW- 732 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~- 732 (784)
|++|+.+++ +|.++|+++++.. .+++++.++++.....+. ..+|-.+
T Consensus 137 ~~~r~~~~~-~~~~el~~l~~~~---~~~~~~~~~s~~~~~~~~----------------------------~~~~~~~~ 184 (231)
T cd06191 137 HSARTPADM-IFAQELRELADKP---QRLRLLCIFTRETLDSDL----------------------------LHGRIDGE 184 (231)
T ss_pred EecCCHHHH-hHHHHHHHHHHhC---CCeEEEEEECCCCCCccc----------------------------cCCccccc
Confidence 999999998 7899999987653 468888877764221110 0011111
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 733 FNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 733 ~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
..+.+.+.... ....||+|||++|++++++.+.+.+ .+...+|.|.|
T Consensus 185 ~~l~~~~~~~~--~~~~vyicGp~~mv~~~~~~l~~~G---~~~~~i~~E~f 231 (231)
T cd06191 185 QSLGAALIPDR--LEREAFICGPAGMMDAVETALKELG---MPPERIHTERF 231 (231)
T ss_pred HHHHHHhCccc--cCCeEEEECCHHHHHHHHHHHHHcC---CCHHHeeeccC
Confidence 22222221111 2346999999999999999998754 45668899988
No 19
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.96 E-value=7.5e-28 Score=248.56 Aligned_cols=225 Identities=20% Similarity=0.295 Sum_probs=174.0
Q ss_pred EEEEeEeeCCCEEEEEEecCCC--ceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHH
Q 047110 498 KNLTPSLYPGKVLSLKMQKPEG--FRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIF 572 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~ 572 (784)
+|++++.+++++.+++++.|.. +.|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~- 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN- 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc-
Confidence 5678889999999999998865 78999999999998666556899999999875 4699999988 7788776542
Q ss_pred HHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEE
Q 047110 573 QEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYL 652 (784)
Q Consensus 573 ~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~l 652 (784)
.++|+.+.|.||||.+.......+++||||||+||||++++++++.... ..++++|
T Consensus 81 -------~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-----------------~~~~v~l 136 (231)
T cd06215 81 -------LKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-----------------PDADIVF 136 (231)
T ss_pred -------CCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-----------------CCCcEEE
Confidence 2579999999999998654444789999999999999999999987643 2467999
Q ss_pred EEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCCh
Q 047110 653 YWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDW 732 (784)
Q Consensus 653 iW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~ 732 (784)
+|++|+.+++ .+.++|+++.+.. ..+++++++++.... . .....||.+.
T Consensus 137 ~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~~~~~--~-------------------------~~~~~g~~~~ 185 (231)
T cd06215 137 IHSARSPADI-IFADELEELARRH---PNFRLHLILEQPAPG--A-------------------------WGGYRGRLNA 185 (231)
T ss_pred EEecCChhhh-hHHHHHHHHHHHC---CCeEEEEEEccCCCC--c-------------------------ccccCCcCCH
Confidence 9999999998 6889999988754 468888888753211 0 0112356553
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 733 FNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 733 ~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+ ++++..... ....||+|||++|++.+++.+.+.+ .+.-++|.|.|
T Consensus 186 ~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~g---v~~~~i~~e~f 231 (231)
T cd06215 186 E-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAELG---FPMSRFHQESF 231 (231)
T ss_pred H-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHcC---CCHHHeeeecC
Confidence 3 333332222 2246999999999999999998754 45678899988
No 20
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.96 E-value=1e-27 Score=245.99 Aligned_cols=216 Identities=18% Similarity=0.192 Sum_probs=166.3
Q ss_pred EEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHHHHhh
Q 047110 500 LTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIFQEEM 576 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~ 576 (784)
++++.+++++++++++.|..+.|+||||+.|++|.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.+
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~---- 74 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA---- 74 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc----
Confidence 467788999999999988788999999999999864 5699999999876 7899999986 55787776532
Q ss_pred hccCCCCCEEEEeCCCCCCCCCC-CCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEE
Q 047110 577 LGAAKGFPKVYIDGPYGASSQDY-VKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWV 655 (784)
Q Consensus 577 ~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~ 655 (784)
++|+.+.|.||||.+.... ...++++|||||+||||+++++++++... ..++|+|+|+
T Consensus 75 ----~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-----------------~~~~v~l~~~ 133 (222)
T cd06194 75 ----RPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-----------------HQGEIRLVHG 133 (222)
T ss_pred ----CCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-----------------CCccEEEEEe
Confidence 4799999999999986533 55689999999999999999999987543 3467999999
Q ss_pred ecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHH
Q 047110 656 TREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNV 735 (784)
Q Consensus 656 ~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i 735 (784)
+|+.+++ ++.++|+++++.. ..++++.++++.... . ++....++
T Consensus 134 ~r~~~~~-~~~~el~~l~~~~---~~~~~~~~~~~~~~~-~-------------------------------~~~~~~~~ 177 (222)
T cd06194 134 ARDPDDL-YLHPALLWLAREH---PNFRYIPCVSEGSQG-D-------------------------------PRVRAGRI 177 (222)
T ss_pred cCChhhc-cCHHHHHHHHHHC---CCeEEEEEEccCCCC-C-------------------------------cccccchh
Confidence 9999998 7999999998754 357776666653211 0 00011112
Q ss_pred HHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 736 FSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 736 ~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
...+... .....||+|||++|++.+++.+.+. |.+.-.+|.|.|
T Consensus 178 ~~~~~~~--~~~~~vyicGp~~m~~~~~~~L~~~---Gv~~~~i~~e~f 221 (222)
T cd06194 178 AAHLPPL--TRDDVVYLCGAPSMVNAVRRRAFLA---GAPMKRIYADPF 221 (222)
T ss_pred hhhhccc--cCCCEEEEeCCHHHHHHHHHHHHHc---CCCHHHeeeccc
Confidence 2222111 1235699999999999999999885 456678999987
No 21
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.96 E-value=1.2e-27 Score=244.41 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=158.3
Q ss_pred CCEEEEEEecCCC-ceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEecCCccHHHHHHHHHhhhccCCCCC
Q 047110 507 GKVLSLKMQKPEG-FRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRALGDWTYRLYGIFQEEMLGAAKGFP 584 (784)
Q Consensus 507 ~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~~~~ 584 (784)
.++++|++..+.+ +.|+||||+.|++|..+..++|||||+|.|.+ +.++|+||..|++|+.|.+. .++|+
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~--------l~~G~ 78 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAER--------LKPGT 78 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHh--------CCCCC
Confidence 4677888876655 78999999999998765678999999999876 59999999999999988743 25799
Q ss_pred EEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHH
Q 047110 585 KVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEW 664 (784)
Q Consensus 585 ~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~ 664 (784)
++.|+||||.+..+.. +++++|||||+||||++|+++++.... ..++++|+|++|+.+++ +
T Consensus 79 ~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-----------------~~~~v~l~~~~r~~~~~-~ 139 (216)
T cd06198 79 RVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-----------------DARPVTLFYCVRDPEDA-V 139 (216)
T ss_pred EEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-----------------CCceEEEEEEECCHHHh-h
Confidence 9999999999875433 789999999999999999999987643 24689999999999988 7
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCC
Q 047110 665 FRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHP 744 (784)
Q Consensus 665 ~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~ 744 (784)
+.++|+++.+.. .+++++..+.. + ++.+...++.... ..
T Consensus 140 ~~~~l~~l~~~~----~~~~~~~~~~~----~-------------------------------~~~~~~~~~~~~~--~~ 178 (216)
T cd06198 140 FLDELRALAAAA----GVVLHVIDSPS----D-------------------------------GRLTLEQLVRALV--PD 178 (216)
T ss_pred hHHHHHHHHHhc----CeEEEEEeCCC----C-------------------------------cccchhhhhhhcC--CC
Confidence 899999887652 45555443321 0 0111111111111 11
Q ss_pred CCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 745 GERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 745 ~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.....||+|||++|++++++.+.+. |.+.-++|.|.|
T Consensus 179 ~~~~~vyicGp~~m~~~v~~~l~~~---Gv~~~~I~~E~f 215 (216)
T cd06198 179 LADADVWFCGPPGMADALEKGLRAL---GVPARRFHYERF 215 (216)
T ss_pred cCCCeEEEECcHHHHHHHHHHHHHc---CCChHhcchhhc
Confidence 2345799999999999999999885 456678899987
No 22
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=9e-28 Score=245.10 Aligned_cols=192 Identities=18% Similarity=0.273 Sum_probs=150.0
Q ss_pred EeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCC----------------CCcccccccccCCCC----CeEEEE
Q 047110 501 TPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEIS----------------PFEWHPFSLTSGPAD----DFLSVH 557 (784)
Q Consensus 501 ~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~----------------~~~~HPFTIaS~p~~----~~l~l~ 557 (784)
+.+.+++++.++++..+.+ +.|+|||||.|.+|... ...+|||||+|.|++ +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567789999999998776 89999999999998531 124688999999964 689999
Q ss_pred EEecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCC---CCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcc
Q 047110 558 IRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDY---VKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFD 634 (784)
Q Consensus 558 Ir~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~---~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~ 634 (784)
||..|++|+.|.+..... ...+..+.|+||||.+..+. ..++++||||||+||||++|+++++.....
T Consensus 82 vk~~G~~T~~L~~~~~~~----~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~----- 152 (220)
T cd06197 82 VRKKGPVTGFLFQVARRL----REQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN----- 152 (220)
T ss_pred EEeCCCCCHHHHHhhhcc----cCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----
Confidence 999999999998865321 12389999999999987543 357899999999999999999999885421
Q ss_pred cccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccC
Q 047110 635 QVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTG 714 (784)
Q Consensus 635 ~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~ 714 (784)
..++|+|+|++|+.+++ ++.++|.++.+. .+.++.+.+
T Consensus 153 -----------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~-----~~~~~~~~~------------------------- 190 (220)
T cd06197 153 -----------TTWDITLLWSLREDDLP-LVMDTLVRFPGL-----PVSTTLFIT------------------------- 190 (220)
T ss_pred -----------CCCcEEEEEEecchhhH-HHHHHHHhccCC-----ceEEEEEEe-------------------------
Confidence 24689999999999988 788888654321 122222111
Q ss_pred ccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 715 IDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 715 ~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+ .||+|||++|++.+++.+.+. .+|.|.|
T Consensus 191 -------------~--------------------~v~~CGP~~m~~~~~~~~~~~--------~~~~e~f 219 (220)
T cd06197 191 -------------S--------------------EVYLCGPPALEKAVLEWLEGK--------KVHRESF 219 (220)
T ss_pred -------------c--------------------cEEEECcHHHHHHHHHHhhhc--------eeEeccc
Confidence 0 499999999999999998762 8899988
No 23
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.96 E-value=1.8e-27 Score=246.34 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=173.2
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCC--ceecCCcEEEEecCCC-CCCcccccccccCCCC-CeEEEEEEec--CCccHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEG--FRYRAGMYMFVQCPEI-SPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRL 568 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~-~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L 568 (784)
.+++|++++.+++++++++++.|.. ..|+||||+.|++|.. +...+|||||+|.|.+ +.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHH
Confidence 4678889999999999999998776 7899999999999843 3346799999999865 5899999987 4567766
Q ss_pred HHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcc
Q 047110 569 YGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPL 648 (784)
Q Consensus 569 ~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 648 (784)
.+. .++|+.+.|.||||.+.......++++|||||+||||++++++++.... ..+
T Consensus 82 ~~~--------l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-----------------~~~ 136 (235)
T cd06217 82 HDE--------VKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-----------------WPV 136 (235)
T ss_pred Hhc--------CCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-----------------CCc
Confidence 542 2579999999999997654334689999999999999999999988653 346
Q ss_pred EEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeec
Q 047110 649 KAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYS 728 (784)
Q Consensus 649 ~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~G 728 (784)
+++++|++|+.+++ ++.++|+++.+.. ..++++.++|+... +. .....|
T Consensus 137 ~i~l~~~~r~~~~~-~~~~el~~~~~~~---~~~~~~~~~s~~~~--~~-------------------------~~~~~g 185 (235)
T cd06217 137 PFRLLYSARTAEDV-IFRDELEQLARRH---PNLHVTEALTRAAP--AD-------------------------WLGPAG 185 (235)
T ss_pred eEEEEEecCCHHHh-hHHHHHHHHHHHC---CCeEEEEEeCCCCC--CC-------------------------cCCcCc
Confidence 79999999999998 7899999888753 35777777775311 10 011235
Q ss_pred CCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 729 RPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 729 RPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
|.+-. .+++.... .....||+|||++|++++++.+.+.+ .+.-++|.|.|
T Consensus 186 ~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~G---v~~~~i~~E~f 235 (235)
T cd06217 186 RITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLELG---VPRDRIRTEAF 235 (235)
T ss_pred EeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHcC---CCHHHEeeccC
Confidence 55532 22332111 12357999999999999999998864 45567899988
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.96 E-value=2.1e-27 Score=252.29 Aligned_cols=231 Identities=19% Similarity=0.291 Sum_probs=171.7
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCC--ceecCCcEEEEecCCC-----------------------------CCCcccc
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEG--FRYRAGMYMFVQCPEI-----------------------------SPFEWHP 542 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~-----------------------------~~~~~HP 542 (784)
.+.++|++++.+++++.+++|+.|.. +.|+||||+.|.+|.. +....||
T Consensus 9 ~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 88 (283)
T cd06188 9 KWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRA 88 (283)
T ss_pred eEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccc
Confidence 35678889999999999999998764 7899999999999853 1123599
Q ss_pred cccccCCC-CCeEEEEEEe-----------cCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEc
Q 047110 543 FSLTSGPA-DDFLSVHIRA-----------LGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGL 610 (784)
Q Consensus 543 FTIaS~p~-~~~l~l~Ir~-----------~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIag 610 (784)
|||+|.|. ++.++|+||. .|..|+.|.+ .++|+++.|.||+|.+..+ ...+++|||||
T Consensus 89 ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~i~gP~G~f~l~-~~~~~~vlIAg 158 (283)
T cd06188 89 YSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN---------LKPGDKVTASGPFGEFFIK-DTDREMVFIGG 158 (283)
T ss_pred cCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc---------CCCCCEEEEECcccccccc-CCCCcEEEEEe
Confidence 99999997 5789999996 4556766654 2589999999999998764 45679999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEec
Q 047110 611 GIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSS 690 (784)
Q Consensus 611 G~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~ 690 (784)
||||||++|++++++.... ..++++|+|++|+.+++ +|.++|+++++.. .++++++.+++
T Consensus 159 GtGItP~~s~l~~~~~~~~----------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~---~~~~~~~~~s~ 218 (283)
T cd06188 159 GAGMAPLRSHIFHLLKTLK----------------SKRKISFWYGARSLKEL-FYQEEFEALEKEF---PNFKYHPVLSE 218 (283)
T ss_pred cccHhHHHHHHHHHHhcCC----------------CCceEEEEEecCCHHHh-hHHHHHHHHHHHC---CCeEEEEEECC
Confidence 9999999999999875431 23689999999999998 8999999988754 35777666665
Q ss_pred CCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhc
Q 047110 691 VYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTF 769 (784)
Q Consensus 691 ~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~ 769 (784)
.... +.. .-..||.+ +.+.+...... ...+..||+|||++|++++++++.+.
T Consensus 219 ~~~~-~~~-------------------------~~~~G~v~-~~~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~ 271 (283)
T cd06188 219 PQPE-DNW-------------------------DGYTGFIH-QVLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDL 271 (283)
T ss_pred CCcc-CCC-------------------------CCcceeec-HHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 3210 100 00113332 12223322221 12346799999999999999999886
Q ss_pred ccCCCceEEEEeeCC
Q 047110 770 SYRTNTRFVFHKEHF 784 (784)
Q Consensus 770 ~~~~~~~~~~~~E~F 784 (784)
+ .+.-.+|.|.|
T Consensus 272 G---v~~~~i~~e~F 283 (283)
T cd06188 272 G---VPRENIAFDDF 283 (283)
T ss_pred C---CCHHHeeccCC
Confidence 4 45678999988
No 25
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=2.8e-27 Score=243.11 Aligned_cols=220 Identities=18% Similarity=0.259 Sum_probs=167.6
Q ss_pred EEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHHHHhh
Q 047110 500 LTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIFQEEM 576 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~ 576 (784)
++++.++++++++++..|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~----- 75 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDE----- 75 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhc-----
Confidence 46778899999999998877889999999999986532 6899999999875 7899999998 7788877763
Q ss_pred hccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEe
Q 047110 577 LGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVT 656 (784)
Q Consensus 577 ~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~ 656 (784)
.++|+.+.|.||||.+......++++||||||+||||++|+++++.... ..+++.|+|++
T Consensus 76 ---l~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-----------------~~~~v~l~~~~ 135 (224)
T cd06187 76 ---LKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-----------------EPRPVHLFFGA 135 (224)
T ss_pred ---CccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-----------------CCCCEEEEEec
Confidence 2579999999999998754444789999999999999999999987643 24689999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH
Q 047110 657 REQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF 736 (784)
Q Consensus 657 R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~ 736 (784)
|+.+++ ++.++|+++.+.. ..++++.++++..+.... .+-.+.+.+
T Consensus 136 ~~~~~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~------------------------------~~g~~~~~~ 181 (224)
T cd06187 136 RTERDL-YDLEGLLALAARH---PWLRVVPVVSHEEGAWTG------------------------------RRGLVTDVV 181 (224)
T ss_pred CChhhh-cChHHHHHHHHhC---CCeEEEEEeCCCCCccCC------------------------------CcccHHHHH
Confidence 999998 7888998887654 357776666642111000 011122222
Q ss_pred HHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 737 SKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 737 ~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.+... +..+..||+|||++|++.+++.+++.+ .+.-.+|.|.|
T Consensus 182 ~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~G---~~~~~i~~e~f 224 (224)
T cd06187 182 GRDGP--DWADHDIYICGPPAMVDATVDALLARG---APPERIHFDKF 224 (224)
T ss_pred HHhcc--ccccCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeccCC
Confidence 22111 112356999999999999999998864 45568888887
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.95 E-value=4.6e-27 Score=244.30 Aligned_cols=230 Identities=20% Similarity=0.268 Sum_probs=175.7
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCC----ceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEec--CCccHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEG----FRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRAL--GDWTYRL 568 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~----~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~~L 568 (784)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|.+|..+...+||||++|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4577889999999999999998764 589999999999986555678999999998878999999987 5567766
Q ss_pred HHHHHHhhhccCCCCCEEEEeCCCCCCCCCCC-CCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 047110 569 YGIFQEEMLGAAKGFPKVYIDGPYGASSQDYV-KYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGP 647 (784)
Q Consensus 569 ~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~-~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~ 647 (784)
.+. .++|+++.|.||+|.+..... .++++||||||+||||++++++++.... ..
T Consensus 82 ~~~--------~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-----------------~~ 136 (241)
T cd06214 82 NDE--------LKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-----------------PA 136 (241)
T ss_pred Hhc--------cCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-----------------CC
Confidence 532 357999999999999876444 5789999999999999999999988653 24
Q ss_pred cEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeee
Q 047110 648 LKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHY 727 (784)
Q Consensus 648 ~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~ 727 (784)
++++|+|++|+.+++ ++.++|+++.+.. .+.++++.++++..... ....
T Consensus 137 ~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~----------------------------~~~~ 185 (241)
T cd06214 137 SRVTLVYGNRTEASV-IFREELADLKARY--PDRLTVIHVLSREQGDP----------------------------DLLR 185 (241)
T ss_pred CcEEEEEEeCCHHHh-hHHHHHHHHHHhC--cCceEEEEEecCCCCCc----------------------------cccc
Confidence 679999999999998 8899999987653 45677766666421110 0123
Q ss_pred cCCChHHHHHHHHHh--CCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 728 SRPDWFNVFSKLARR--HPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 728 GRPd~~~i~~~~~~~--~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
||.+-. ++.+.... .+.++..||+|||+.|++.+++.+++.+ .+.-.+|.|.|
T Consensus 186 g~~~~~-~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G---~~~~~i~~e~f 240 (241)
T cd06214 186 GRLDAA-KLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELG---VPAERIHRELF 240 (241)
T ss_pred CccCHH-HHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcC---CCHHHeecccc
Confidence 565532 22222221 1223467999999999999999998753 45667888887
No 27
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.95 E-value=3.6e-27 Score=258.62 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=172.9
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCC----CceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCC--ccHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPE----GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGD--WTYRL 568 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~--~T~~L 568 (784)
+.++|++++.+++++.+++|+.|. .+.|+||||+.|.+|..+....|||||+|.|+++.++|+||..++ .|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 467788999999999999998764 358999999999997444446799999999988899999998743 45555
Q ss_pred HHHHHHhhhccCCCCCEEEEeCCCCCCCCCCC--CCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 047110 569 YGIFQEEMLGAAKGFPKVYIDGPYGASSQDYV--KYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKG 646 (784)
Q Consensus 569 ~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~--~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (784)
.+ ..++|+.+.|.||+|.+..+.. ..+++||||||+||||++|++++++... .
T Consensus 82 ~~--------~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-----------------~ 136 (352)
T TIGR02160 82 ND--------EIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-----------------P 136 (352)
T ss_pred Hh--------cCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-----------------C
Confidence 43 2468999999999999865332 3478999999999999999999987643 2
Q ss_pred ccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceee
Q 047110 647 PLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTH 726 (784)
Q Consensus 647 ~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~ 726 (784)
.++++|+|++|+.+++ +|.++|+++++.. +.+++++..+++..... ...
T Consensus 137 ~~~v~l~~~~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~s~~~~~~----------------------------~~~ 185 (352)
T TIGR02160 137 RSTFTLVYGNRRTASV-MFAEELADLKDKH--PQRFHLAHVLSREPREA----------------------------PLL 185 (352)
T ss_pred CceEEEEEEeCCHHHH-HHHHHHHHHHHhC--cCcEEEEEEecCCCcCc----------------------------ccc
Confidence 4689999999999998 8999999987654 34577776666532111 012
Q ss_pred ecCCChHHHHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 727 YSRPDWFNVFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 727 ~GRPd~~~i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.||.+...+.+.+.+.. ......||+|||++|++++++.+.+.+ .+.-.+|.|.|
T Consensus 186 ~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G---v~~~~i~~E~F 241 (352)
T TIGR02160 186 SGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLG---VPAGRVHLELF 241 (352)
T ss_pred cCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcC---CCHHHEEEEec
Confidence 36766433222222111 122346999999999999999998864 45567888887
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.95 E-value=3.9e-27 Score=241.78 Aligned_cols=218 Identities=23% Similarity=0.298 Sum_probs=165.7
Q ss_pred eEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHHHHHhhhc
Q 047110 502 PSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGIFQEEMLG 578 (784)
Q Consensus 502 ~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~~~ 578 (784)
++.+++++.++++..+....|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------- 75 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------- 75 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC-------
Confidence 45667899999999877778999999999999765668999999999976 8999999999 8899888754
Q ss_pred cCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecC
Q 047110 579 AAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTRE 658 (784)
Q Consensus 579 ~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~ 658 (784)
++|+++.|.||+|.+......++++||||||+||||++++++++.... ..++++|+|++|+
T Consensus 76 --~~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-----------------~~~~v~l~~~~r~ 136 (223)
T cd00322 76 --KPGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-----------------PGGEITLLYGART 136 (223)
T ss_pred --CCCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-----------------CCCcEEEEEecCC
Confidence 479999999999998655567789999999999999999999988653 2467999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHH
Q 047110 659 QISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSK 738 (784)
Q Consensus 659 ~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~ 738 (784)
.+++ ++.++|+++.+.. .++++++++++....... ..++......+..
T Consensus 137 ~~~~-~~~~el~~l~~~~---~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 184 (223)
T cd00322 137 PADL-LFLDELEELAKEG---PNFRLVLALSRESEAKLG----------------------------PGGRIDREAEILA 184 (223)
T ss_pred HHHh-hHHHHHHHHHHhC---CCeEEEEEecCCCCCCCc----------------------------ccceeeHHHHHHh
Confidence 9988 8999999998753 467777777653221100 0011111111111
Q ss_pred HHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEee
Q 047110 739 LARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKE 782 (784)
Q Consensus 739 ~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E 782 (784)
... ......||+|||++|++.+++.+.+.+ .+.-++|.|
T Consensus 185 ~~~--~~~~~~~yvCGp~~m~~~~~~~L~~~g---v~~~~i~~e 223 (223)
T cd00322 185 LLP--DDSGALVYICGPPAMAKAVREALVSLG---VPEERIHTE 223 (223)
T ss_pred hcc--cccCCEEEEECCHHHHHHHHHHHHHcC---CCHHHcccC
Confidence 111 123457999999999999999998864 334455544
No 29
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.95 E-value=6e-27 Score=255.58 Aligned_cols=226 Identities=19% Similarity=0.289 Sum_probs=171.2
Q ss_pred eeeeEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHH
Q 047110 493 GIYEIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYR 567 (784)
Q Consensus 493 ~~~~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~ 567 (784)
..++++|++++.++++++.++|+.|. .+.|+||||+.|.+|.. ++|||||+|.|++ +.++|+||.. |.+|+.
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 34578899999999999999998763 57899999999999864 6899999999975 7999999976 566776
Q ss_pred HHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 047110 568 LYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGP 647 (784)
Q Consensus 568 L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~ 647 (784)
|.+. .++|+.+.++||||.+..+....+++||||||+||||++|+++++.... ..
T Consensus 178 l~~~--------l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-----------------~~ 232 (339)
T PRK07609 178 VFGA--------LKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-----------------IQ 232 (339)
T ss_pred HHHh--------ccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-----------------CC
Confidence 6543 3589999999999999765456689999999999999999999998643 34
Q ss_pred cEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeee
Q 047110 648 LKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHY 727 (784)
Q Consensus 648 ~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~ 727 (784)
++|+|+|++|+.+++ ++.++++++.+.. ..++++..+++...+ +.. .| ..
T Consensus 233 ~~i~l~~g~r~~~dl-~~~e~l~~~~~~~---~~~~~~~~~s~~~~~-~~~--------------------~g-----~~ 282 (339)
T PRK07609 233 RPVTLYWGARRPEDL-YLSALAEQWAEEL---PNFRYVPVVSDALDD-DAW--------------------TG-----RT 282 (339)
T ss_pred CcEEEEEecCChHHh-ccHHHHHHHHHhC---CCeEEEEEecCCCCC-CCc--------------------cC-----cc
Confidence 679999999999998 6788888887654 357777777753211 100 00 11
Q ss_pred cCCChHHHH-HHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 728 SRPDWFNVF-SKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 728 GRPd~~~i~-~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
|+. .+.+ +.+ .. .....||+|||++|++.+++.+.+.+ .+.-++|.|.|
T Consensus 283 G~v--~~~~~~~~-~~--~~~~~vy~CGp~~m~~~~~~~l~~~G---~~~~~i~~e~F 332 (339)
T PRK07609 283 GFV--HQAVLEDF-PD--LSGHQVYACGSPVMVYAARDDFVAAG---LPAEEFFADAF 332 (339)
T ss_pred CcH--HHHHHhhc-cc--ccCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeEEeec
Confidence 222 1222 211 11 12346999999999999999998854 45668898987
No 30
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.95 E-value=5.4e-27 Score=255.09 Aligned_cols=225 Identities=15% Similarity=0.225 Sum_probs=170.7
Q ss_pred eeeeEEEEEeEeeCCCEEEEEEecC---CCceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecC--CccH
Q 047110 493 GIYEIKNLTPSLYPGKVLSLKMQKP---EGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALG--DWTY 566 (784)
Q Consensus 493 ~~~~~~v~~~~~~~~~v~~l~l~~p---~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g--~~T~ 566 (784)
....++|++++.+++++.+++|..+ ..+.|+||||+.|.+|+.. .+|||||+|.|. ++.++|+||..+ .+|+
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~ 182 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchh
Confidence 3456889999999999999999876 4678999999999998643 589999999986 578999999864 3566
Q ss_pred HHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 047110 567 RLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKG 646 (784)
Q Consensus 567 ~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (784)
.|.+. .++|+.+.|+||||.+..+ ...+++||||||+||||++|+++++.... .
T Consensus 183 ~L~~~--------l~~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~-----------------~ 236 (340)
T PRK11872 183 YLRER--------CQVGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG-----------------C 236 (340)
T ss_pred hHhhC--------CCCCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC-----------------C
Confidence 66542 3689999999999998764 33579999999999999999999987643 2
Q ss_pred ccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceee
Q 047110 647 PLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTH 726 (784)
Q Consensus 647 ~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~ 726 (784)
.++++|+|++|+.+++ +|.++|+++++.. .+++++..+++..+.+. | .
T Consensus 237 ~~~v~l~~g~r~~~dl-~~~~el~~~~~~~---~~~~~~~~~s~~~~~~~-----------------------g-----~ 284 (340)
T PRK11872 237 SPPVHLYYGVRHAADL-CELQRLAAYAERL---PNFRYHPVVSKASADWQ-----------------------G-----K 284 (340)
T ss_pred CCcEEEEEecCChHHh-ccHHHHHHHHHHC---CCcEEEEEEeCCCCcCC-----------------------C-----c
Confidence 3679999999999998 7899999988764 35777777764321111 0 1
Q ss_pred ecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 727 YSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 727 ~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.|+.. +.+.... .......||+|||++|++.+++.+.+.+ .+.-++|.|.|
T Consensus 285 ~g~v~--~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~G---v~~~~i~~E~F 335 (340)
T PRK11872 285 RGYIH--EHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQA---LENYRLYYEKF 335 (340)
T ss_pred eeecc--HHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHcC---CCHHHEEEeee
Confidence 13322 2222110 1112245999999999999999998754 45678999987
No 31
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.95 E-value=1e-26 Score=252.64 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=170.9
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGI 571 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~ 571 (784)
+.++|++++.++++++.++|..+..+.|+||||+.|.+|... ..+|||||+|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~-~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSA-ETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCC-EeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 467788999999999999998777788999999999998532 35799999999964 6799999987 5567666532
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAY 651 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 651 (784)
.++|+++.+.||+|.+..+....+++||||||+||||++||++++.... ..++++
T Consensus 89 --------l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-----------------~~~~v~ 143 (332)
T PRK10684 89 --------VKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-----------------PQADVQ 143 (332)
T ss_pred --------CCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-----------------CCCCEE
Confidence 3689999999999998764445678999999999999999999987543 246899
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCC
Q 047110 652 LYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPD 731 (784)
Q Consensus 652 liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd 731 (784)
|+|++|+.+++ .|.++|+++++.. ..++++++.+... .+ ....||.+
T Consensus 144 l~y~~r~~~~~-~~~~el~~l~~~~---~~~~~~~~~~~~~--~~---------------------------~~~~grl~ 190 (332)
T PRK10684 144 VIFNVRTPQDV-IFADEWRQLKQRY---PQLNLTLVAENNA--TE---------------------------GFIAGRLT 190 (332)
T ss_pred EEEeCCChHHh-hhHHHHHHHHHHC---CCeEEEEEeccCC--CC---------------------------CccccccC
Confidence 99999999998 7899999988764 3455555443210 00 01236766
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.. ++.+..... ....||+|||++|++.+++.+.+.+ .+.-++|.|.|
T Consensus 191 ~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~G---v~~~~i~~E~F 237 (332)
T PRK10684 191 RE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKALG---VTADRFFKEKF 237 (332)
T ss_pred HH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeEeecc
Confidence 43 333322211 1246999999999999999998754 45567899987
No 32
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=7.2e-27 Score=238.97 Aligned_cols=213 Identities=21% Similarity=0.289 Sum_probs=162.1
Q ss_pred eEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCC-CCcccccccccCCCCCeEEEEEEec---CCccHHHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEIS-PFEWHPFSLTSGPADDFLSVHIRAL---GDWTYRLYGI 571 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~-~~~~HPFTIaS~p~~~~l~l~Ir~~---g~~T~~L~~~ 571 (784)
+++|++++.+++++++++++.|..+.|+||||+.|.++..+ ..++|||||+|.|.++.++|+||.. |+.|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46788899999999999999888889999999999987644 2478999999999889999999986 5677766532
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAY 651 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 651 (784)
++|+.+.+.||||.+.. .+++||||||+||||++|+++++.... ..++++
T Consensus 82 ---------~~G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~-----------------~~~~v~ 131 (218)
T cd06196 82 ---------QPGDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG-----------------KLEGNT 131 (218)
T ss_pred ---------CCCCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC-----------------CCceEE
Confidence 58999999999999753 257999999999999999999988643 346799
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCC
Q 047110 652 LYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPD 731 (784)
Q Consensus 652 liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd 731 (784)
|+|++|+.+++ ++.++|+++.. +++..++++.... ....||.+
T Consensus 132 l~~~~r~~~~~-~~~~el~~l~~-------~~~~~~~s~~~~~-----------------------------~~~~g~~~ 174 (218)
T cd06196 132 LIFANKTEKDI-ILKDELEKMLG-------LKFINVVTDEKDP-----------------------------GYAHGRID 174 (218)
T ss_pred EEEecCCHHHH-hhHHHHHHhhc-------ceEEEEEcCCCCC-----------------------------CeeeeEEC
Confidence 99999999988 78888888742 3344455542110 01235554
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEee
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKE 782 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E 782 (784)
- +++++.... ....||+|||++|++++++.+.+.+ .+.-++|.|
T Consensus 175 ~-~~l~~~~~~---~~~~vyiCGp~~m~~~~~~~l~~~G---~~~~~i~~E 218 (218)
T cd06196 175 K-AFLKQHVTD---FNQHFYVCGPPPMEEAINGALKELG---VPEDSIVFE 218 (218)
T ss_pred H-HHHHHhcCC---CCCEEEEECCHHHHHHHHHHHHHcC---CCHHHEecC
Confidence 2 234433221 1246999999999999999998864 344556665
No 33
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.95 E-value=2.5e-26 Score=256.61 Aligned_cols=232 Identities=15% Similarity=0.205 Sum_probs=175.7
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCC---CceecCCcEEEEecCCCC--CCcccccccccCCCCCeEEEEEEec--CCccH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPE---GFRYRAGMYMFVQCPEIS--PFEWHPFSLTSGPADDFLSVHIRAL--GDWTY 566 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~~--~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~ 566 (784)
+..++|++++.+++++..+++..+. ...|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |..|.
T Consensus 154 ~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S~ 233 (399)
T PRK13289 154 WRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVSN 233 (399)
T ss_pred cEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeehH
Confidence 4567888999999999999998754 358999999999986432 2357999999999888999999988 77888
Q ss_pred HHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 047110 567 RLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKG 646 (784)
Q Consensus 567 ~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (784)
.|.+. .++|+.+.|.||||.+..+....+++|||||||||||++|++++++... .
T Consensus 234 ~L~~~--------l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----------------~ 288 (399)
T PRK13289 234 YLHDH--------VNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-----------------P 288 (399)
T ss_pred HHhhc--------CCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-----------------C
Confidence 77652 3589999999999998765445689999999999999999999987543 3
Q ss_pred ccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceee
Q 047110 647 PLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTH 726 (784)
Q Consensus 647 ~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~ 726 (784)
.++++|+|++|+.+++ +|.++|+++.+.. ++++++.++++.... +. .+. ....
T Consensus 289 ~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~---~~~~~~~~~s~~~~~-~~---------------------~~~-~~~~ 341 (399)
T PRK13289 289 KRPVHFIHAARNGGVH-AFRDEVEALAARH---PNLKAHTWYREPTEQ-DR---------------------AGE-DFDS 341 (399)
T ss_pred CCCEEEEEEeCChhhc-hHHHHHHHHHHhC---CCcEEEEEECCCccc-cc---------------------cCC-cccc
Confidence 4689999999999998 7999999998754 367777767653211 00 000 0012
Q ss_pred ecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 727 YSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 727 ~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.||.+.+ .+.+... .....||+|||++|++++++.+.+.+ .+.-.+|.|.|
T Consensus 342 ~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~~G---v~~~~I~~E~F 392 (399)
T PRK13289 342 EGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLELG---VPEERIHYEFF 392 (399)
T ss_pred cCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeeecc
Confidence 3666633 2222221 12356999999999999999998864 45567888987
No 34
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.94 E-value=1.1e-25 Score=234.01 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=158.5
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEec--CCccHHHHHH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRAL--GDWTYRLYGI 571 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~--g~~T~~L~~~ 571 (784)
+++++|++++.+++++++++++.|. ..|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|..|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5678899999999999999998763 379999999999864343457999999999888899999986 778887753
Q ss_pred HHHhhhccCCCCCEEEEeCCCCC-CCCCCC-CCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGA-SSQDYV-KYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLK 649 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~-~~~~~~-~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (784)
.++|+++.|.||+|. +..+.. ..+++|||||||||||++|+++++.... ..++
T Consensus 82 --------l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~-----------------~~~~ 136 (248)
T PRK10926 82 --------LKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE-----------------RFKN 136 (248)
T ss_pred --------CCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-----------------CCCc
Confidence 268999999998744 433322 3479999999999999999999876432 3467
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecC
Q 047110 650 AYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSR 729 (784)
Q Consensus 650 v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GR 729 (784)
++|+|++|+.+++ +|.++|+++++.. +.+++++..+++.... + ...||
T Consensus 137 v~l~~g~r~~~d~-~~~~el~~l~~~~--~~~~~v~~~~s~~~~~-~----------------------------~~~G~ 184 (248)
T PRK10926 137 LVLVHAARYAADL-SYLPLMQELEQRY--EGKLRIQTVVSRETAP-G----------------------------SLTGR 184 (248)
T ss_pred EEEEEeCCcHHHH-HHHHHHHHHHHhC--cCCEEEEEEECCCCCC-C----------------------------CcCCc
Confidence 9999999999998 7999999987753 3467777777652110 0 01133
Q ss_pred CChHHHH-----HHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHh
Q 047110 730 PDWFNVF-----SKLARRH-PGERIGVFYCGSLLLGKELEGLCTT 768 (784)
Q Consensus 730 Pd~~~i~-----~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~ 768 (784)
.+ +++ .+..... ...+..||+|||++|++++++.+.+
T Consensus 185 v~--~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 185 VP--ALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred cc--hhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHH
Confidence 22 111 1111111 1123569999999999999999976
No 35
>PRK05713 hypothetical protein; Provisional
Probab=99.94 E-value=5.6e-26 Score=244.47 Aligned_cols=212 Identities=17% Similarity=0.230 Sum_probs=161.8
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEec--CCccHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRAL--GDWTYRLYGI 571 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~ 571 (784)
.+++|++++.+++++++++++.+..+.|+||||+.|.++.. .+|||||+|.|. ++.++|+||.. |.+|..|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 46889999999999999999876678999999999998742 689999999986 47899999854 667776532
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCC-CCCCC-CCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGAS-SQDYV-KYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLK 649 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~-~~~~~-~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (784)
.++|+++.+.||+|.+ ..+.. ..+++||||||+||||++|++++++... ..++
T Consensus 168 --------l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-----------------~~~~ 222 (312)
T PRK05713 168 --------LQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-----------------HQGP 222 (312)
T ss_pred --------CCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-----------------CCCc
Confidence 3589999999999853 22222 4578999999999999999999987653 2467
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecC
Q 047110 650 AYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSR 729 (784)
Q Consensus 650 v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GR 729 (784)
++|+|++|+.+++ +|.++|+++++.. .+++++...+..
T Consensus 223 v~l~~g~r~~~d~-~~~~el~~l~~~~---~~~~~~~~~~~~-------------------------------------- 260 (312)
T PRK05713 223 IRLLHLARDSAGH-YLAEPLAALAGRH---PQLSVELVTAAQ-------------------------------------- 260 (312)
T ss_pred EEEEEEcCchHHh-hhHHHHHHHHHHC---CCcEEEEEECcc--------------------------------------
Confidence 9999999999999 7899999998754 346665433310
Q ss_pred CChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 730 PDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 730 Pd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+.+.+.++.. . .....||+|||++|++++++.+.+. |.+.-++|.|.|
T Consensus 261 --~~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~---Gv~~~~i~~e~F 308 (312)
T PRK05713 261 --LPAALAELRL-V-SRQTMALLCGSPASVERFARRLYLA---GLPRNQLLADVF 308 (312)
T ss_pred --hhhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHHc---CCCHHHeeeccc
Confidence 0111111111 1 1235699999999999999999875 445678899987
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.94 E-value=1.9e-25 Score=237.34 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=157.7
Q ss_pred eeeEEEEEeEeeCCCE--EEEEEecCC---CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHH
Q 047110 494 IYEIKNLTPSLYPGKV--LSLKMQKPE---GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYR 567 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v--~~l~l~~p~---~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~ 567 (784)
++.++|++++.+++++ +.+++..|. .+.|+||||+.|++|.. ..|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---GEVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---CceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 3568889999999884 445544442 46799999999999865 348999999986 46899999999999987
Q ss_pred HHHHHHHhhhccCCCCCEEEEeCCCCCCC-CCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 047110 568 LYGIFQEEMLGAAKGFPKVYIDGPYGASS-QDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKG 646 (784)
Q Consensus 568 L~~~~~~~~~~~~~~~~~v~i~GPyG~~~-~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (784)
|.++ ++|+++.|+||||.+. .+....++++||||||||||++|++++++.... .
T Consensus 82 L~~l---------~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~----------------~ 136 (289)
T PRK08345 82 IHRL---------KEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW----------------K 136 (289)
T ss_pred HHhC---------CCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC----------------C
Confidence 7532 5899999999999843 322344689999999999999999998875431 2
Q ss_pred ccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceee
Q 047110 647 PLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTH 726 (784)
Q Consensus 647 ~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~ 726 (784)
.++|+|+|++|+.+++ +|.++|+++++.. .+++++.++++..+ .+... + ...+..-...
T Consensus 137 ~~~v~l~~~~r~~~d~-~~~deL~~l~~~~---~~~~~~~~~s~~~~-~~~~~--------------~--~~~~~~~~~~ 195 (289)
T PRK08345 137 YGNITLIYGAKYYEDL-LFYDELIKDLAEA---ENVKIIQSVTRDPE-WPGCH--------------G--LPQGFIERVC 195 (289)
T ss_pred CCcEEEEEecCCHHHh-hHHHHHHHHHhcC---CCEEEEEEecCCCC-CcCcc--------------c--cccccccccc
Confidence 4689999999999999 7999999987643 46888777776321 11000 0 0000000001
Q ss_pred ecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 727 YSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 727 ~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
.|+. .+++.+.. ....+..||+|||++|++++++.+.+.+.
T Consensus 196 ~g~v--~~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 196 KGVV--TDLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRGY 236 (289)
T ss_pred cCch--hhhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 1221 12222111 11123569999999999999999988653
No 37
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.94 E-value=1.2e-25 Score=234.70 Aligned_cols=207 Identities=18% Similarity=0.292 Sum_probs=154.2
Q ss_pred EEeEeeCCCEEEEEEecCC----CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHH
Q 047110 500 LTPSLYPGKVLSLKMQKPE----GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQE 574 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~ 574 (784)
.+++.+++++..++++.+. .+.|+||||+.|.+|..+ .|||||+|.|. ++.++|+||..|.+|+.|.++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l--- 75 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHEL--- 75 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcC---
Confidence 4677888887777766543 378999999999998653 39999999997 578999999999999877643
Q ss_pred hhhccCCCCCEEEEeCCCCCCCC-CCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 575 EMLGAAKGFPKVYIDGPYGASSQ-DYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 575 ~~~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
+.|+++.|+||||.+.. +...++++||||||+||||++|++++++.... ..++++|+
T Consensus 76 ------~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~----------------~~~~i~Li 133 (253)
T cd06221 76 ------KPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE----------------DYGKVTLL 133 (253)
T ss_pred ------CCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc----------------cCCcEEEE
Confidence 47999999999999543 22257899999999999999999999886531 24689999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ ++.++|+++.+. .+++++.++++..+.... ..|+.+
T Consensus 134 ~~~r~~~~~-~~~~~L~~l~~~----~~~~~~~~~s~~~~~~~~----------------------------~~g~v~-- 178 (253)
T cd06221 134 YGARTPEDL-LFKEELKEWAKR----SDVEVILTVDRAEEGWTG----------------------------NVGLVT-- 178 (253)
T ss_pred EecCChHHc-chHHHHHHHHhc----CCeEEEEEeCCCCCCccC----------------------------Cccccc--
Confidence 999999998 789999988764 356776666643211000 112222
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
+.+.+..... ....||+|||++|++++++++.+.+.
T Consensus 179 ~~l~~~~~~~--~~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 179 DLLPELTLDP--DNTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred hhHHhcCCCc--CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 2333222111 23579999999999999999988653
No 38
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.94 E-value=3e-25 Score=229.65 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=163.6
Q ss_pred EEEEeEeeCCCEEEEEEecCC---CceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHHHH
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE---GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLYGI 571 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~ 571 (784)
+|++++.+++++.+++|..+. ...|+||||+.|.+|..+....||||++|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 466788899999999998775 368999999999999766668999999998864 5799999986 6677766532
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCC-CeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKY-DVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKA 650 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~-~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 650 (784)
++|+++.|+||||.+....... +++||||||+||||++++++++..... ..++|
T Consensus 82 ---------~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----------------~~~~i 136 (234)
T cd06183 82 ---------KPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE----------------DKTKI 136 (234)
T ss_pred ---------CCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC----------------cCcEE
Confidence 5799999999999986543333 799999999999999999999876421 24789
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCC
Q 047110 651 YLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRP 730 (784)
Q Consensus 651 ~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRP 730 (784)
+|+|++|+.++. ++.++|+++.+.. ...++++.++++..... ..+.||.
T Consensus 137 ~l~~~~r~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~----------------------------~~~~g~~ 185 (234)
T cd06183 137 SLLYANRTEEDI-LLREELDELAKKH--PDRFKVHYVLSRPPEGW----------------------------KGGVGFI 185 (234)
T ss_pred EEEEecCCHHHh-hhHHHHHHHHHhC--cccEEEEEEEcCCCcCC----------------------------ccccceE
Confidence 999999999998 8999999988753 35688777776432110 1122454
Q ss_pred ChHHHHHHHHHhCCCCeEEEEEeCChhHHH-HHHHHHHhccc
Q 047110 731 DWFNVFSKLARRHPGERIGVFYCGSLLLGK-ELEGLCTTFSY 771 (784)
Q Consensus 731 d~~~i~~~~~~~~~~~~~~V~vCGP~~m~~-~v~~~~~~~~~ 771 (784)
+-. +++......+.....||+|||++|++ ++++.+.+.+.
T Consensus 186 ~~~-~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~ 226 (234)
T cd06183 186 TKE-MIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGY 226 (234)
T ss_pred CHH-HHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 422 23332221012346799999999999 99999987653
No 39
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.94 E-value=6.6e-25 Score=227.53 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=175.4
Q ss_pred eeeeEEEEEeEeeCCCEEEEEEecCCCc--eecCCcEEEEecCCCCCCcccccccccCCCCC-eEEEEEEec--CCccHH
Q 047110 493 GIYEIKNLTPSLYPGKVLSLKMQKPEGF--RYRAGMYMFVQCPEISPFEWHPFSLTSGPADD-FLSVHIRAL--GDWTYR 567 (784)
Q Consensus 493 ~~~~~~v~~~~~~~~~v~~l~l~~p~~~--~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~-~l~l~Ir~~--g~~T~~ 567 (784)
.+..++|++++..+++++.+++.+|... .|+||||+.|.++..+....|.|||+|+|.++ .+.|.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 3567889999999999999999998866 59999999999997776799999999999875 899999988 566666
Q ss_pred HHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 047110 568 LYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGP 647 (784)
Q Consensus 568 L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~ 647 (784)
|.+. .++|+++.|.+|.|.|..+....++++|+||||||||++||++++.... .
T Consensus 84 Lh~~--------lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-----------------~- 137 (266)
T COG1018 84 LHDH--------LKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-----------------P- 137 (266)
T ss_pred HHhc--------CCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-----------------C-
Confidence 6643 4799999999999999876655568999999999999999999988765 4
Q ss_pred cEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeee
Q 047110 648 LKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHY 727 (784)
Q Consensus 648 ~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~ 727 (784)
.+|.|++++|+.+++ .|+++ +.+.+.. .+...+..+.... + .-
T Consensus 138 ~~v~l~h~~R~~~~~-af~de-~~l~~~~--~~~~~~~~~~~~~----~-----------------------------~~ 180 (266)
T COG1018 138 ADVVLVHAARTPADL-AFRDE-LELAAEL--PNALLLGLYTERG----K-----------------------------LQ 180 (266)
T ss_pred CCEEEEEecCChhhc-chhhH-HHHHhhC--CCCeeEEEEEecC----C-----------------------------cc
Confidence 679999999999999 68888 7777654 3344554554310 0 12
Q ss_pred cCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 728 SRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 728 GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
||++...+.. ..+.....+|+|||.+|+++|+..+.+.+ .+.-++|.|.|
T Consensus 181 g~~~~~~l~~----~~~~~~r~~y~CGp~~fm~av~~~l~~~g---~~~~~vh~E~F 230 (266)
T COG1018 181 GRIDVSRLLS----AAPDGGREVYLCGPGPFMQAVRLALEALG---VPDDRVHLEGF 230 (266)
T ss_pred ccccHHHHhc----cCCCCCCEEEEECCHHHHHHHHHHHHHcC---CChhcEEEeec
Confidence 5666544322 12111146999999999999999998865 34578999987
No 40
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.94 E-value=3.5e-25 Score=230.13 Aligned_cols=209 Identities=16% Similarity=0.244 Sum_probs=155.8
Q ss_pred EEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCC-CCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHHhh
Q 047110 500 LTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPE-ISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQEEM 576 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~-~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~~~ 576 (784)
++++.+++++++|+++.|. ...|+||||+.|++|. .+.+.+|||||+|.|. ++.++|+||..|.+|+.|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 4677889999999999876 6789999999999986 3456899999999884 789999999999988766432
Q ss_pred hccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEe
Q 047110 577 LGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVT 656 (784)
Q Consensus 577 ~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~ 656 (784)
++|+++.|.||||.........+++|||||||||||++|+++++... .++++|+|++
T Consensus 77 ----~~Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~-------------------~~~v~l~~~~ 133 (246)
T cd06218 77 ----KAGDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER-------------------GIKVTVLLGF 133 (246)
T ss_pred ----CCCCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc-------------------CCceEEEEEc
Confidence 57999999999997433233578999999999999999999988652 2579999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH
Q 047110 657 REQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF 736 (784)
Q Consensus 657 R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~ 736 (784)
|+.+++ .|.++|+++.. . +. ++.... .. + .+..+.+.+
T Consensus 134 r~~~d~-~~~~eL~~l~~------~--~~--~~~~~~--~~----------------------~-------~~g~v~~~l 171 (246)
T cd06218 134 RSADDL-FLVEEFEALGA------E--VY--VATDDG--SA----------------------G-------TKGFVTDLL 171 (246)
T ss_pred cchhhh-hhHHHHHhhCC------c--EE--EEcCCC--CC----------------------C-------cceehHHHH
Confidence 999997 78888887732 1 22 221100 00 0 011233444
Q ss_pred HHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 737 SKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 737 ~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
.+..... ....||+|||++|++++++.+++.+. ...++.|++
T Consensus 172 ~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~Gv----~~~~~~~~~ 213 (246)
T cd06218 172 KELLAEA--RPDVVYACGPEPMLKAVAELAAERGV----PCQVSLEER 213 (246)
T ss_pred HHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcCC----CEEEEeccc
Confidence 4443322 23579999999999999999988643 355666653
No 41
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.93 E-value=8.1e-25 Score=234.44 Aligned_cols=221 Identities=18% Similarity=0.174 Sum_probs=158.7
Q ss_pred eeeEEEEEeEeeC-----CCEEEEEEecCCCceecCCcEEEEecCCCC------CCcccccccccCCCC-----CeEEEE
Q 047110 494 IYEIKNLTPSLYP-----GKVLSLKMQKPEGFRYRAGMYMFVQCPEIS------PFEWHPFSLTSGPAD-----DFLSVH 557 (784)
Q Consensus 494 ~~~~~v~~~~~~~-----~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~------~~~~HPFTIaS~p~~-----~~l~l~ 557 (784)
.++++|++++.++ +++++|+++.+..+.|+||||+.|.+|+.. ...+|+|||+|.|.+ ..++|+
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~ 103 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLC 103 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEE
Confidence 3577888999887 899999999888899999999999887431 124799999999842 279999
Q ss_pred EEec---------------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCC-C-CCCCeEEEEEcCCCHHHHHHH
Q 047110 558 IRAL---------------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQD-Y-VKYDVVLLIGLGIGATPFISI 620 (784)
Q Consensus 558 Ir~~---------------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~-~-~~~~~vvlIagG~GItp~lsi 620 (784)
||.. |-.|..|.+ .++|+.+.|.||+|.+... . ...+++|||||||||||++||
T Consensus 104 Vr~~~~~~~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sm 174 (307)
T PLN03116 104 VRRAVYYDPETGKEDPAKKGVCSNFLCD---------AKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGF 174 (307)
T ss_pred EEEEEEecCCcCCCCCccCcchhhhHhh---------CCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHH
Confidence 9864 334554443 3689999999999998652 2 345789999999999999999
Q ss_pred HHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhh
Q 047110 621 IRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSA 700 (784)
Q Consensus 621 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~ 700 (784)
+++++...... .....+++|+|++|+.+++ .|.++|+++++.. ..+++++..+++.......
T Consensus 175 l~~~l~~~~~~------------~~~~~~v~L~~g~R~~~d~-~~~deL~~l~~~~--~~~~~~~~~~sr~~~~~~g--- 236 (307)
T PLN03116 175 LRRMFMEDVPA------------FKFGGLAWLFLGVANSDSL-LYDDEFERYLKDY--PDNFRYDYALSREQKNKKG--- 236 (307)
T ss_pred HHHHHhhcccc------------ccCCCcEEEEEecCCcccc-hHHHHHHHHHHhC--CCcEEEEEEEccCCcccCC---
Confidence 99887543100 0013579999999999998 7899999998764 3367777767653211100
Q ss_pred HHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHH----hCCCCeEEEEEeCChhHHHHHHHHHHhc
Q 047110 701 ILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLAR----RHPGERIGVFYCGSLLLGKELEGLCTTF 769 (784)
Q Consensus 701 ~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~----~~~~~~~~V~vCGP~~m~~~v~~~~~~~ 769 (784)
++-.+.+.+.+..+ ... ....||+|||++|++++++++.+.
T Consensus 237 ---------------------------~~g~v~~~l~~~~~~~~~~~~-~~~~vYiCGp~~mv~~v~~~L~~~ 281 (307)
T PLN03116 237 ---------------------------GKMYVQDKIEEYSDEIFKLLD-NGAHIYFCGLKGMMPGIQDTLKRV 281 (307)
T ss_pred ---------------------------CccchhhHHHHHHHHHHhhhc-CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 11122233332211 111 235699999999999999888774
No 42
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.93 E-value=4.3e-25 Score=246.04 Aligned_cols=231 Identities=18% Similarity=0.272 Sum_probs=170.4
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecC--CCceecCCcEEEEecCCC-----------------------------CCCcccc
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKP--EGFRYRAGMYMFVQCPEI-----------------------------SPFEWHP 542 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p--~~~~~~pGQ~v~l~~p~~-----------------------------~~~~~HP 542 (784)
.+.++|++++.+++++.+++++.+ .+..|+||||+.|++|.. +....||
T Consensus 133 ~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 212 (409)
T PRK05464 133 KWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRA 212 (409)
T ss_pred EEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeee
Confidence 357889999999999999999876 367899999999999842 1235799
Q ss_pred cccccCCCC-CeEEEEEEec-----------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEc
Q 047110 543 FSLTSGPAD-DFLSVHIRAL-----------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGL 610 (784)
Q Consensus 543 FTIaS~p~~-~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIag 610 (784)
|||+|.|.+ +.++|+||.. |..|..|.+ .++|+.+.|.||+|.+... ...+++|||||
T Consensus 213 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~v~gP~G~f~~~-~~~~~ivlIAg 282 (409)
T PRK05464 213 YSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS---------LKPGDKVTISGPFGEFFAK-DTDAEMVFIGG 282 (409)
T ss_pred eccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh---------CCCCCEEEEEccccCcEec-CCCceEEEEEe
Confidence 999999965 5899999963 666776653 2589999999999999764 45689999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEec
Q 047110 611 GIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSS 690 (784)
Q Consensus 611 G~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~ 690 (784)
|+||||++|++++++.... ..++++|+|++|+.+++ .+.++|+++.+.. +++++++.+++
T Consensus 283 GtGIaP~~sml~~~l~~~~----------------~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~---~~~~~~~~~s~ 342 (409)
T PRK05464 283 GAGMAPMRSHIFDQLKRLK----------------SKRKISFWYGARSLREM-FYVEDFDQLAAEN---PNFKWHVALSD 342 (409)
T ss_pred ccChhHHHHHHHHHHhCCC----------------CCceEEEEEecCCHHHh-hHHHHHHHHHHhC---CCeEEEEEEcC
Confidence 9999999999998776431 23689999999999998 7889999887654 45777666654
Q ss_pred CCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhc
Q 047110 691 VYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTF 769 (784)
Q Consensus 691 ~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~ 769 (784)
.... +.. ....|+.+ +.+.+...+.. ...+..||+|||++|++++++.+.+.
T Consensus 343 ~~~~-~~~-------------------------~g~~G~v~-~~l~~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~ 395 (409)
T PRK05464 343 PLPE-DNW-------------------------TGYTGFIH-NVLYENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL 395 (409)
T ss_pred CCCC-CCC-------------------------CCccceeC-HHHHHhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 3211 100 00113322 11222222211 12345799999999999999999886
Q ss_pred ccCCCceEEEEeeCC
Q 047110 770 SYRTNTRFVFHKEHF 784 (784)
Q Consensus 770 ~~~~~~~~~~~~E~F 784 (784)
+ .+.-.+|.|.|
T Consensus 396 G---v~~~~I~~E~F 407 (409)
T PRK05464 396 G---VEDENILLDDF 407 (409)
T ss_pred C---CCHHHEEEccc
Confidence 4 45678999988
No 43
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.93 E-value=4.3e-25 Score=224.64 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=155.1
Q ss_pred EeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEecCC---ccHHHHHHHH
Q 047110 501 TPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRALGD---WTYRLYGIFQ 573 (784)
Q Consensus 501 ~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~g~---~T~~L~~~~~ 573 (784)
+++.+++++++++++.|.. ..|+||||+.|++|.. ..|||||+|.|.+ +.+.|+||..++ .|..|.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~-- 76 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---LVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHEL-- 76 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---CceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhc--
Confidence 4667889999999998765 3899999999999873 6899999999875 899999998753 45555432
Q ss_pred HhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 574 EEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 574 ~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
.++|+++.|.||+|.+... ...+++||||||+||||++++++++... .++++++
T Consensus 77 ------~~~Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~-------------------~~~v~l~ 130 (211)
T cd06185 77 ------LRVGDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR-------------------GADFELH 130 (211)
T ss_pred ------CCCCCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC-------------------CCCEEEE
Confidence 3579999999999998653 3457999999999999999999987642 2569999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ .+.++|+++. . ..+. ++.+.. .+|.++.
T Consensus 131 ~~~r~~~~~-~~~~~l~~~~--~---~~~~--~~~~~~-----------------------------------~~~~~~~ 167 (211)
T cd06185 131 YAGRSREDA-AFLDELAALP--G---DRVH--LHFDDE-----------------------------------GGRLDLA 167 (211)
T ss_pred EEeCCCcch-hHHHHHhhhc--C---CcEE--EEECCC-----------------------------------CCccCHH
Confidence 999999998 5777887775 1 2333 333321 0355555
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+++... . ....||+|||+.|++++++.+.+.+ .+.-++|.|.|
T Consensus 168 ~~~~~~----~-~~~~vyicGp~~m~~~~~~~l~~~g---v~~~~i~~e~F 210 (211)
T cd06185 168 ALLAAP----P-AGTHVYVCGPEGMMDAVRAAAAALG---WPEARLHFERF 210 (211)
T ss_pred HHhccC----C-CCCEEEEECCHHHHHHHHHHHHHcC---CChhheEeeec
Confidence 555432 1 2346999999999999999998864 45678999988
No 44
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.93 E-value=6.9e-25 Score=228.76 Aligned_cols=210 Identities=17% Similarity=0.282 Sum_probs=156.8
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCccHHHHHHHH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQ 573 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~ 573 (784)
+..++|++++.+++++.++++..|..+.|+||||+.|.+|..+...+|||||+|.| ++.++|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 35678889999999999999997767789999999999997766679999999998 889999999999998876532
Q ss_pred HhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 574 EEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 574 ~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
++|+++.|.||||.........+++|+||||+||||++|+++++.... .+++++
T Consensus 81 -------~~G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-------------------~~v~l~ 134 (250)
T PRK00054 81 -------KEGDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-------------------VEVTTV 134 (250)
T ss_pred -------CCCCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-------------------CcEEEE
Confidence 589999999999984322236689999999999999999999987432 468999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ ++.++|+++.+ + +++.. +.... .+..+.
T Consensus 135 ~~~r~~~d~-~~~~el~~~~~---------~--~~~~~-~~~~~------------------------------~~g~v~ 171 (250)
T PRK00054 135 LGARTKDEV-IFEEEFAKVGD---------V--YVTTD-DGSYG------------------------------FKGFVT 171 (250)
T ss_pred EEcCCHHHh-hhHHHHHhcCC---------E--EEEec-CCCCC------------------------------cccchh
Confidence 999999998 68888776321 1 22211 00000 001122
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeC
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEH 783 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~ 783 (784)
+++.... . ....||+|||++|++++++.+++.+. ...+..|.
T Consensus 172 ~~l~~~~---~-~~~~vyvCGp~~m~~~v~~~l~~~Gv----~~~~~~e~ 213 (250)
T PRK00054 172 DVLDELD---S-EYDAIYSCGPEIMMKKVVEILKEKKV----PAYVSLER 213 (250)
T ss_pred HhHhhhc---c-CCCEEEEeCCHHHHHHHHHHHHHcCC----cEEEEEcc
Confidence 3333222 1 12259999999999999999988542 45566554
No 45
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.93 E-value=2.7e-24 Score=228.57 Aligned_cols=222 Identities=18% Similarity=0.240 Sum_probs=159.4
Q ss_pred eeEEEEEeEeeC-----CCEEEEEEecCCCceecCCcEEEEecCCCC-----CCcccccccccCCCC-----CeEEEEEE
Q 047110 495 YEIKNLTPSLYP-----GKVLSLKMQKPEGFRYRAGMYMFVQCPEIS-----PFEWHPFSLTSGPAD-----DFLSVHIR 559 (784)
Q Consensus 495 ~~~~v~~~~~~~-----~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~-----~~~~HPFTIaS~p~~-----~~l~l~Ir 559 (784)
..++|++++.++ +++++++++.+..+.|+|||||.|.+|... ....|||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 457788888887 689999998877889999999999987432 134799999998853 58999999
Q ss_pred ec------------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCC-CCCCeEEEEEcCCCHHHHHHHHHHHHH
Q 047110 560 AL------------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDY-VKYDVVLLIGLGIGATPFISIIRDVAN 626 (784)
Q Consensus 560 ~~------------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vvlIagG~GItp~lsil~~l~~ 626 (784)
.. |..|..|.++ ++|++|.|.||+|.+.... ...+++||||||+||||++|+++++..
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~l---------~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~ 159 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCDL---------KPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFR 159 (286)
T ss_pred EEEEecCCCCceeccchHHHHhhC---------CCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHH
Confidence 87 5556655542 5899999999999976432 334689999999999999999999876
Q ss_pred HhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHH
Q 047110 627 NAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQ 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~ 706 (784)
..... ....++++|+|++|+.+++ .+.++|+++++.. ...++++..+++........
T Consensus 160 ~~~~~------------~~~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~sr~~~~~~g~-------- 216 (286)
T cd06208 160 EKHAD------------YKFTGLAWLFFGVPNSDSL-LYDDELEKYPKQY--PDNFRIDYAFSREQKNADGG-------- 216 (286)
T ss_pred hhhcc------------cCCCCCEEEEEEecCccch-hHHHHHHHHHHhC--CCcEEEEEEEcCCCCCCCCC--------
Confidence 53110 0124679999999999998 7899999988753 34678777777532111000
Q ss_pred HhhhhccCccccCCCCceeeecCCChHHHHHH----HHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 707 ALHYARTGIDIISKTPMWTHYSRPDWFNVFSK----LARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 707 ~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~----~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
.| .+++.+.+ +.+.....+..||+|||++|+++|++++.++.
T Consensus 217 --------------------~g--~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m~~~v~~~L~~~~ 262 (286)
T cd06208 217 --------------------KM--YVQDRIAEYAEEIWNLLDKDNTHVYICGLKGMEPGVDDALTSVA 262 (286)
T ss_pred --------------------ce--ehhhHHHHhHHHHHHHHhcCCcEEEEeCCchHHHHHHHHHHHHH
Confidence 01 11222221 11111112346999999999999999998843
No 46
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.93 E-value=1.2e-24 Score=242.08 Aligned_cols=230 Identities=18% Similarity=0.295 Sum_probs=168.5
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCC-----------------------------CCCccccc
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEI-----------------------------SPFEWHPF 543 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~-----------------------------~~~~~HPF 543 (784)
++++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. +...+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 567888899999999999998763 47899999999998742 12356999
Q ss_pred ccccCCCC-CeEEEEEEec-----------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcC
Q 047110 544 SLTSGPAD-DFLSVHIRAL-----------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLG 611 (784)
Q Consensus 544 TIaS~p~~-~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG 611 (784)
||+|.|.+ +.++|+||.. |..|..|.+ .++|+.+.|.||+|.+... ...+++||||||
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~i~gP~G~f~l~-~~~~~lvlIAgG 279 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS---------LKPGDKVTISGPFGEFFAK-DTDAEMVFIGGG 279 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc---------CCCcCEEEEEeccCCCeec-CCCCCEEEEecC
Confidence 99999975 6899999973 666766653 3689999999999999763 356789999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecC
Q 047110 612 IGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSV 691 (784)
Q Consensus 612 ~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~ 691 (784)
+||||++|++++++.... ..++++|+|++|+.+++ ++.++|+++.+.. +++++++.+++.
T Consensus 280 tGIaP~lsmi~~~l~~~~----------------~~~~v~l~~g~R~~~dl-~~~~el~~l~~~~---~~~~~~~~~s~~ 339 (405)
T TIGR01941 280 AGMAPMRSHIFDQLKRLK----------------SKRKISFWYGARSLREM-FYQEDFDQLEAEN---PNFVWHVALSDP 339 (405)
T ss_pred cCcchHHHHHHHHHhcCC----------------CCCeEEEEEecCCHHHH-hHHHHHHHHHHhC---CCeEEEEEeCCC
Confidence 999999999998765421 24679999999999998 7899999887654 467777666643
Q ss_pred CCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhC-CCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 692 YQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRH-PGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 692 ~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~-~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
... +.. .| ..|+.+ +.+.+...+.. ...+..||+|||++|++.+++.+.+.+
T Consensus 340 ~~~-~~~--------------------~g-----~~G~v~-~~l~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~G 392 (405)
T TIGR01941 340 QPE-DNW--------------------TG-----YTGFIH-NVLYENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLG 392 (405)
T ss_pred Ccc-CCC--------------------CC-----ccceeC-HHHHHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 211 100 00 112222 11222222211 113457999999999999999998864
Q ss_pred cCCCceEEEEeeCC
Q 047110 771 YRTNTRFVFHKEHF 784 (784)
Q Consensus 771 ~~~~~~~~~~~E~F 784 (784)
.+.-++|.|.|
T Consensus 393 ---v~~~~I~~E~F 403 (405)
T TIGR01941 393 ---VERENILLDDF 403 (405)
T ss_pred ---CCHHHEEEecc
Confidence 45568899987
No 47
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.93 E-value=3.6e-24 Score=224.42 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=154.7
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCccHHHHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQE 574 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~ 574 (784)
.+++|++++.++++++.+++..| ..|+||||+.|++|..+ .|||||++.+ ++.++|+||..|..|..|.++
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l--- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFNL--- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHhC---
Confidence 45788899999999999999865 47999999999998653 4999999876 678999999999888877542
Q ss_pred hhhccCCCCCEEEEeCCCCC-CCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 575 EMLGAAKGFPKVYIDGPYGA-SSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 575 ~~~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
++|+.+.|.||+|. +..+....+++||||||+||||++|+++++..... ..++++|+
T Consensus 79 ------~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~----------------~~~~v~L~ 136 (263)
T PRK08221 79 ------KEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ----------------EIKSLDLI 136 (263)
T ss_pred ------CCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc----------------cCceEEEE
Confidence 58999999999998 54443446799999999999999999999875421 24689999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ .+.++|+++.+.. . +++.+++..... ....||.+
T Consensus 137 ~g~r~~~~l-~~~~el~~~~~~~----~--~~~~~~~~~~~~----------------------------~~~~G~v~-- 179 (263)
T PRK08221 137 LGFKNPDDI-LFKEDLKRWREKI----N--LILTLDEGEEGY----------------------------RGNVGLVT-- 179 (263)
T ss_pred EecCCHHHh-hHHHHHHHHhhcC----c--EEEEecCCCCCC----------------------------ccCccccC--
Confidence 999999998 7899999887632 2 323233211100 01225544
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
+.+.+.... ...+..||+|||++|++++++.+.+.+.
T Consensus 180 ~~l~~~~~~-~~~~~~vylCGp~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 180 KYIPELTLK-DIDNMQVIVVGPPIMMKFTVLEFLKRGI 216 (263)
T ss_pred hhhHhccCC-CcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 222221111 1134579999999999999999987654
No 48
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.93 E-value=4.3e-24 Score=228.48 Aligned_cols=224 Identities=10% Similarity=0.067 Sum_probs=161.5
Q ss_pred eeeeeEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCC---CCCcccccccccCCC-CCeEEEEEEec--CC
Q 047110 492 SGIYEIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEI---SPFEWHPFSLTSGPA-DDFLSVHIRAL--GD 563 (784)
Q Consensus 492 ~~~~~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~---~~~~~HPFTIaS~p~-~~~l~l~Ir~~--g~ 563 (784)
.++.+++|.+++.+++++.+++|..|. .+.++||||+.+.++.. ....+||||++|.|+ ++.++|+||.. |.
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~ 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCc
Confidence 456788999999999999999998754 68899999999887632 123589999999996 57899999996 44
Q ss_pred ccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 047110 564 WTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKI 643 (784)
Q Consensus 564 ~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~ 643 (784)
.|..|.+ .++|+.+.|.||+|.+..+....+++|||||||||||++||+++++...... .
T Consensus 130 ~S~~L~~---------lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~-----------~ 189 (325)
T PTZ00274 130 MTNHLFG---------MHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDS-----------G 189 (325)
T ss_pred ccHHHhc---------CCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhccccc-----------c
Confidence 5766653 3689999999998876544444579999999999999999999987653210 0
Q ss_pred CCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCc
Q 047110 644 PKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPM 723 (784)
Q Consensus 644 ~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~ 723 (784)
.....+|+|+|++|+.+++ +|.++|+++++.. .++++++..+++.....+.
T Consensus 190 ~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~--~~~f~v~~~ls~~~~~~~w-------------------------- 240 (325)
T PTZ00274 190 EVDRTKLSFLFCNRTERHI-LLKGLFDDLARRY--SNRFKVYYTIDQAVEPDKW-------------------------- 240 (325)
T ss_pred cCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhC--CCcEEEEEEeCCCCcccCC--------------------------
Confidence 0124589999999999999 8999999998765 3467777666543211000
Q ss_pred eeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHH
Q 047110 724 WTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGL 765 (784)
Q Consensus 724 ~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~ 765 (784)
....||.+-. ++.+........+..||+|||++|++.|...
T Consensus 241 ~g~~G~V~~~-ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 241 NHFLGYVTKE-MVRRTMPAPEEKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred CCCCCccCHH-HHHHhcCCCccCCcEEEEeCCHHHHHHhcCC
Confidence 1123565522 2233322211122469999999999999654
No 49
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.92 E-value=3.3e-24 Score=221.26 Aligned_cols=199 Identities=20% Similarity=0.265 Sum_probs=150.6
Q ss_pred EEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCccHHHHHHHHHhhh
Q 047110 498 KNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQEEML 577 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~ 577 (784)
+|++++.+++++.+++++.| ..|+||||+.|++|.. ..|||||+|.| +.++|+||..|.+|+.|.++
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~l------ 68 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHDL------ 68 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHhc------
Confidence 57788999999999999875 5899999999999865 46999999998 78999999999999888753
Q ss_pred ccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEec
Q 047110 578 GAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTR 657 (784)
Q Consensus 578 ~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R 657 (784)
++|+.+.|.||||.+.. .. ++++||||||+||||++|+++++... ++++|+|++|
T Consensus 69 ---~~Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~--------------------~~i~l~~~~r 123 (233)
T cd06220 69 ---KEGDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA--------------------ADVTVLLGAR 123 (233)
T ss_pred ---CCCCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc--------------------CCEEEEEecC
Confidence 57999999999998432 22 68999999999999999999987642 4699999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHH
Q 047110 658 EQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFS 737 (784)
Q Consensus 658 ~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~ 737 (784)
+.+++ .+.++|++ .. .+. + .+.. .+.. ..|+. .+++.
T Consensus 124 ~~~d~-~~~~eL~~---~~----~~~--~-~~~~--~~~~----------------------------~~g~~--~~~l~ 160 (233)
T cd06220 124 TKEEL-LFLDRLRK---SD----ELI--V-TTDD--GSYG----------------------------FKGFV--TDLLK 160 (233)
T ss_pred ChHHC-hhHHHHhh---CC----cEE--E-EEeC--CCCc----------------------------cccee--hHHHh
Confidence 99998 67777776 11 121 1 2211 0000 01222 23444
Q ss_pred HHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 738 KLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 738 ~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
+... .....||+|||++|++.+++.+.+.+. ...+|.|.|
T Consensus 161 ~~~~---~~~~~vyicGp~~m~~~~~~~L~~~g~----~~~i~~e~f 200 (233)
T cd06220 161 ELDL---EEYDAIYVCGPEIMMYKVLEILDERGV----RAQFSLERY 200 (233)
T ss_pred hhcc---cCCCEEEEECCHHHHHHHHHHHHhcCC----cEEEEeccc
Confidence 3331 122369999999999999999987542 578888887
No 50
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.92 E-value=4.9e-24 Score=221.63 Aligned_cols=144 Identities=21% Similarity=0.277 Sum_probs=121.4
Q ss_pred EEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHHhhh
Q 047110 500 LTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQEEML 577 (784)
Q Consensus 500 ~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~~~~ 577 (784)
++++.+++++++++++.|. .+.|+||||+.|.+|......+|||||+|.|. +++++|+||..|..|+.|.++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~------ 75 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL------ 75 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC------
Confidence 4577889999999999775 46899999999999854456899999999874 689999999999988877533
Q ss_pred ccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEec
Q 047110 578 GAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTR 657 (784)
Q Consensus 578 ~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R 657 (784)
++|+++.|.||||.+.......++++|||||+||||++++++++... .++++++|++|
T Consensus 76 ---~~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~-------------------~~~v~l~~~~r 133 (243)
T cd06192 76 ---KPGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN-------------------GNKVTVLAGAK 133 (243)
T ss_pred ---CCCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC-------------------CCeEEEEEecC
Confidence 57999999999998765433478999999999999999999998743 25799999999
Q ss_pred CCCcHHHHHHHHHHH
Q 047110 658 EQISFEWFRDVITEI 672 (784)
Q Consensus 658 ~~~~~~~~~~~L~~l 672 (784)
+.+++ ++.++|+++
T Consensus 134 ~~~d~-~~~~el~~~ 147 (243)
T cd06192 134 KAKEE-FLDEYFELP 147 (243)
T ss_pred cHHHH-HHHHHHHhh
Confidence 99998 788888766
No 51
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.92 E-value=4.4e-24 Score=222.34 Aligned_cols=199 Identities=16% Similarity=0.223 Sum_probs=148.2
Q ss_pred EEEEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCCCCcccccccccCC-CCCeEEEEEEecCCccHHHHHHHHHh
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEISPFEWHPFSLTSGP-ADDFLSVHIRALGDWTYRLYGIFQEE 575 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~ 575 (784)
+|++++.++++++.++++.|. ...|+||||+.|+++.. .++|||||+|.| +++.++|+||..|..|..|.++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l---- 75 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELATL---- 75 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhc----
Confidence 467788899999999999765 35799999999998743 367999999986 4678999999999988776543
Q ss_pred hhccCCCCCEE-EEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEE
Q 047110 576 MLGAAKGFPKV-YIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYW 654 (784)
Q Consensus 576 ~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW 654 (784)
++|+++ .++||||.+.. ....+++||||||+||||++|+++++.... ++++|+|
T Consensus 76 -----~~G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~~-------------------~~v~l~~ 130 (248)
T cd06219 76 -----EEGDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEAG-------------------NRVITII 130 (248)
T ss_pred -----CCCCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-------------------CeEEEEE
Confidence 478999 69999999864 345689999999999999999999976532 5799999
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHH
Q 047110 655 VTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFN 734 (784)
Q Consensus 655 ~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~ 734 (784)
++|+.+++ +|.++|+++.+. + .+.+.. .+. + ..|+ +.+
T Consensus 131 ~~r~~~~~-~~~~el~~l~~~--------~-~~~~~~--~~~-----------------------~-----~~g~--v~~ 168 (248)
T cd06219 131 GARTKDLV-ILEDEFRAVSDE--------L-IITTDD--GSY-----------------------G-----EKGF--VTD 168 (248)
T ss_pred EcCCHHHh-hhHHHHHhhcCe--------E-EEEeCC--CCC-----------------------C-----cccc--chH
Confidence 99999998 788888887532 1 122221 000 0 0011 122
Q ss_pred HHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 735 VFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 735 i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
.+.+...... ....||+|||+.|++.+++.+.+.+
T Consensus 169 ~l~~~~~~~~-~~~~vyiCGP~~m~~~~~~~l~~~G 203 (248)
T cd06219 169 PLKELIESGE-KVDLVIAIGPPIMMKAVSELTRPYG 203 (248)
T ss_pred HHHHHHhccC-CccEEEEECCHHHHHHHHHHHHHcC
Confidence 3444332222 1235999999999999999987754
No 52
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.92 E-value=8e-24 Score=221.56 Aligned_cols=208 Identities=15% Similarity=0.184 Sum_probs=152.5
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCccHHHHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGIFQE 574 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~ 574 (784)
+.++|+++...+++++.++++.| +.|+||||+.|.+|.. ..|||||++. +++.++|+||..|..|..|.+
T Consensus 6 ~~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~---- 75 (261)
T TIGR02911 6 FKSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFT---- 75 (261)
T ss_pred ceEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHc----
Confidence 35778888888999999988764 6799999999999875 3589999984 568899999999998887753
Q ss_pred hhhccCCCCCEEEEeCCCCC-CCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEE
Q 047110 575 EMLGAAKGFPKVYIDGPYGA-SSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLY 653 (784)
Q Consensus 575 ~~~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~li 653 (784)
.++|+.+.|.||||. +..+....++++|||||+||||+++++++++.... ..++++|+
T Consensus 76 -----l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~----------------~~~~v~L~ 134 (261)
T TIGR02911 76 -----LKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK----------------EIKSLNLI 134 (261)
T ss_pred -----CCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc----------------cCceEEEE
Confidence 257999999999998 54333356799999999999999999999875431 23689999
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChH
Q 047110 654 WVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWF 733 (784)
Q Consensus 654 W~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~ 733 (784)
|++|+.+++ ++.++|+++++.. .+. ..+....+ +. ....|+-+
T Consensus 135 ~~~r~~~~~-~~~~eL~~l~~~~----~~~--~~~~~~~~--~~--------------------------~~~~g~v~-- 177 (261)
T TIGR02911 135 LGFKTPDDI-LFKEDIAEWKGNI----NLT--LTLDEAEE--DY--------------------------KGNIGLVT-- 177 (261)
T ss_pred EecCCHHHh-hHHHHHHHHHhcC----cEE--EEEcCCCC--CC--------------------------cCCeeccC--
Confidence 999999998 7899999987632 232 23322111 10 00113322
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
..+.+.... +..+..||+|||++|++++++.+.+.+.
T Consensus 178 ~~l~~~~~~-~~~~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 178 KYIPELTLK-DIEEVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred HhHHhccCC-CccceEEEEECCHHHHHHHHHHHHHcCC
Confidence 122221111 1124569999999999999999988654
No 53
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.92 E-value=1.5e-23 Score=226.47 Aligned_cols=222 Identities=17% Similarity=0.222 Sum_probs=155.6
Q ss_pred eeEEEEEeEeeC-----CCEEEEEEecCCCceecCCcEEEEecCCCC----CCcccccccccCCC-----CCeEEEEEEe
Q 047110 495 YEIKNLTPSLYP-----GKVLSLKMQKPEGFRYRAGMYMFVQCPEIS----PFEWHPFSLTSGPA-----DDFLSVHIRA 560 (784)
Q Consensus 495 ~~~~v~~~~~~~-----~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~~----~~~~HPFTIaS~p~-----~~~l~l~Ir~ 560 (784)
+.++++..+.+. +++.+|+|..+..+.|+||||+.|.+|+.. +...|||||+|.|. +++++|+||.
T Consensus 91 ~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~ 170 (367)
T PLN03115 91 YTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKR 170 (367)
T ss_pred eEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEE
Confidence 344555554443 489999998777889999999999987532 34579999999983 4689999996
Q ss_pred c-----------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCC-CCCCCCeEEEEEcCCCHHHHHHHHHHHHHHh
Q 047110 561 L-----------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQ-DYVKYDVVLLIGLGIGATPFISIIRDVANNA 628 (784)
Q Consensus 561 ~-----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vvlIagG~GItp~lsil~~l~~~~ 628 (784)
. |-.|..|.+ .++|+.+.|.||+|.+.. +.....++|||||||||||++|+|++++...
T Consensus 171 ~~y~~~~g~~~~G~~S~~L~~---------Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~ 241 (367)
T PLN03115 171 LVYTNDQGEIVKGVCSNFLCD---------LKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241 (367)
T ss_pred EEeecCCCccCCeehHhhHhh---------CCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhc
Confidence 4 344554443 368999999999998754 2234568999999999999999999876433
Q ss_pred hhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHh
Q 047110 629 QKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQAL 708 (784)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~ 708 (784)
... ....++++|+|++|+.+++ +|.++|+++++.. ..+++++..+++....++.
T Consensus 242 ~~~------------~~~~~~v~Lf~G~R~~~dl-ly~dELe~l~~~~--p~~f~v~~a~SR~~~~~~G----------- 295 (367)
T PLN03115 242 HDD------------YKFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKA--PENFRLDFAVSREQTNAKG----------- 295 (367)
T ss_pred ccc------------ccCCCcEEEEEccCCHHHh-hHHHHHHHHHHhC--CCCEEEEEEEcCCCcccCC-----------
Confidence 110 0013579999999999988 8999999988764 3478888888864322111
Q ss_pred hhhccCccccCCCCceeeecCCChHHHHHH----HHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 709 HYARTGIDIISKTPMWTHYSRPDWFNVFSK----LARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 709 ~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~----~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
.. | .+++.+.+ +.+........||+|||++|+++|.+++.++.
T Consensus 296 ------------~k-----g--yVqd~i~e~~e~l~~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~ 342 (367)
T PLN03115 296 ------------EK-----M--YIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLA 342 (367)
T ss_pred ------------cc-----e--eehhHHHHHHHHHHhhcccCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 00 0 11222322 21112123467999999999999999987753
No 54
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.92 E-value=1.3e-23 Score=222.51 Aligned_cols=199 Identities=19% Similarity=0.298 Sum_probs=147.8
Q ss_pred EEEEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHHh
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQEE 575 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~~ 575 (784)
+|++++.+++++..+++..|. ...++||||+.|+++..+ ++|||||+|.|. ++.++|+||..|..|+.|.++
T Consensus 3 ~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l---- 76 (281)
T PRK06222 3 KILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL---- 76 (281)
T ss_pred EEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC----
Confidence 567888999999999998765 357999999999997543 579999999764 578999999999999877643
Q ss_pred hhccCCCCCEE-EEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEE
Q 047110 576 MLGAAKGFPKV-YIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYW 654 (784)
Q Consensus 576 ~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW 654 (784)
++|+.+ .|.||||.+.. ....+++++||||+||||++++++++.... .+++++|
T Consensus 77 -----~~Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-------------------~~v~l~~ 131 (281)
T PRK06222 77 -----KEGDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-------------------NKVITII 131 (281)
T ss_pred -----CCCCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-------------------CeEEEEE
Confidence 589999 69999999764 344679999999999999999999876432 4799999
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHH
Q 047110 655 VTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFN 734 (784)
Q Consensus 655 ~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~ 734 (784)
+.|+.+++ ++.++|+++.+. + +++.. |.. .| ..|+ +.+
T Consensus 132 g~r~~~d~-~~~~el~~~~~~--------~--~v~~~----d~~--------------------~g-----~~G~--v~~ 169 (281)
T PRK06222 132 GARNKDLL-ILEDEMKAVSDE--------L--YVTTD----DGS--------------------YG-----RKGF--VTD 169 (281)
T ss_pred ecCCHHHh-hcHHHHHhhCCe--------E--EEEcC----CCC--------------------cC-----cccc--hHH
Confidence 99999998 677777765431 1 22211 100 00 0121 223
Q ss_pred HHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 735 VFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 735 i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
.+.+...+.. ....||+|||++|++.+.+.+.+.+
T Consensus 170 ~l~~~~~~~~-~~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 170 VLKELLESGK-KVDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred HHHHHhhcCC-CCcEEEEECCHHHHHHHHHHHHhcC
Confidence 4444333221 1235999999999999999998764
No 55
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.91 E-value=3.3e-23 Score=212.62 Aligned_cols=222 Identities=17% Similarity=0.240 Sum_probs=177.8
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCC---CceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPE---GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYR 567 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~ 567 (784)
++..++.+.+.++.|+..++|..|. .+....|||+++.+|-.+....||||..|.+.+ +.+.|.||.+ |..|+.
T Consensus 51 ~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~~ 130 (286)
T KOG0534|consen 51 YYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQH 130 (286)
T ss_pred eEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccHH
Confidence 5678888999999998888888774 567899999999999877788999999999877 7999999987 556665
Q ss_pred HHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 047110 568 LYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGP 647 (784)
Q Consensus 568 L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~ 647 (784)
|.+ .+.|+.+.++||.|....+...++++.|||||+||||+++++++++...+ +.
T Consensus 131 l~~---------LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~----------------d~ 185 (286)
T KOG0534|consen 131 LDS---------LKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE----------------DT 185 (286)
T ss_pred Hhc---------CCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC----------------CC
Confidence 554 47899999999999987666678999999999999999999999987653 46
Q ss_pred cEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeee
Q 047110 648 LKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHY 727 (784)
Q Consensus 648 ~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~ 727 (784)
.+|.|++++++++++ +++++|+++++.+ ..++.++.++++....++. ..
T Consensus 186 tki~lly~N~te~DI-Llr~eL~~la~~~--p~rf~~~y~v~~~~~~w~~----------------------------~~ 234 (286)
T KOG0534|consen 186 TKISLLYANKTEDDI-LLREELEELASKY--PERFKVWYVVDQPPEIWDG----------------------------SV 234 (286)
T ss_pred cEEEEEEecCCcccc-chHHHHHHHHhhC--cceEEEEEEEcCCcccccC----------------------------cc
Confidence 889999999999999 9999999999987 4589998888875433222 23
Q ss_pred cCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHH-HHHHHHhcccC
Q 047110 728 SRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKE-LEGLCTTFSYR 772 (784)
Q Consensus 728 GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~-v~~~~~~~~~~ 772 (784)
|+++-+.+-..+....++ .+.|++|||++|++. +..++.+.+..
T Consensus 235 g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~Lg~~ 279 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKLGYN 279 (286)
T ss_pred CccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhcCCC
Confidence 566655444444444433 578999999999985 55566656543
No 56
>PRK05802 hypothetical protein; Provisional
Probab=99.91 E-value=4.1e-23 Score=221.22 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=125.4
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLY 569 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~ 569 (784)
.+.++|++++.+++++..++++.|.. ..++|||||.|++|..+.+..|||||++.|. ++.++|+||..|..|+.|.
T Consensus 64 ~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~ 143 (320)
T PRK05802 64 TYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIA 143 (320)
T ss_pred cEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHh
Confidence 35688999999999999999987753 3479999999999865556779999999875 5789999999999998886
Q ss_pred HHHHHhhhccCCCCCEEEEeCCCCC--CCCC---CCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 047110 570 GIFQEEMLGAAKGFPKVYIDGPYGA--SSQD---YVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIP 644 (784)
Q Consensus 570 ~~~~~~~~~~~~~~~~v~i~GPyG~--~~~~---~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~ 644 (784)
++ ++|+++.|.||||. +... ....+++|+||||+||||++++++++....
T Consensus 144 ~l---------~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---------------- 198 (320)
T PRK05802 144 KL---------NKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---------------- 198 (320)
T ss_pred cC---------CCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC----------------
Confidence 43 58999999999965 3221 223568999999999999999999987542
Q ss_pred CCccEEEEEEEecCCCcHHHHHHHHHHHHH
Q 047110 645 KGPLKAYLYWVTREQISFEWFRDVITEISK 674 (784)
Q Consensus 645 ~~~~~v~liW~~R~~~~~~~~~~~L~~l~~ 674 (784)
.+++++|+.|+.+++ ++.++|+++..
T Consensus 199 ---~~v~li~g~r~~~~~-~~~~el~~~~~ 224 (320)
T PRK05802 199 ---NKIIVIIDKGPFKNN-FIKEYLELYNI 224 (320)
T ss_pred ---CcEEEEEeCCCHHHH-HHHHHHHHhhC
Confidence 369999999999998 78888887653
No 57
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.91 E-value=4.9e-23 Score=216.08 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=149.3
Q ss_pred CCCEEEEEEecC--CCceecCCcEEEEecCCCCCCcccccccccCCCC--CeEEEEEEec-----------CCccHHHHH
Q 047110 506 PGKVLSLKMQKP--EGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD--DFLSVHIRAL-----------GDWTYRLYG 570 (784)
Q Consensus 506 ~~~v~~l~l~~p--~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~--~~l~l~Ir~~-----------g~~T~~L~~ 570 (784)
+.++.+++|..| ....|+||||+.|.+|. ....|||||+|.|++ +.++|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 356999999988 57889999999999885 346899999999864 8899999986 666766653
Q ss_pred HHHHhhhccCCCCCEEEEeCCCC-CCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccE
Q 047110 571 IFQEEMLGAAKGFPKVYIDGPYG-ASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLK 649 (784)
Q Consensus 571 ~~~~~~~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (784)
.++|+.+.+.||+| .+..+....+++|||||||||||++|++++++...... ....+
T Consensus 92 ---------lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~-------------~~~~~ 149 (267)
T cd06182 92 ---------LQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG-------------KARGP 149 (267)
T ss_pred ---------CCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-------------ccCCC
Confidence 25899999999999 77654444679999999999999999999988642110 12467
Q ss_pred EEEEEEecCC-CcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeec
Q 047110 650 AYLYWVTREQ-ISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYS 728 (784)
Q Consensus 650 v~liW~~R~~-~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~G 728 (784)
+.|+|++|+. +++ .|.++|.++.+.. ..++++..+++........ +. .
T Consensus 150 v~l~~g~r~~~~d~-~~~del~~~~~~~---~~~~~~~~~S~~~~~~~~~--------------------------v~-~ 198 (267)
T cd06182 150 AWLFFGCRNFASDY-LYREELQEALKDG---ALTRLDVAFSREQAEPKVY--------------------------VQ-D 198 (267)
T ss_pred EEEEEeCCCCcccc-cHHHHHHHHHhCC---CcceEEEEEccCCCCCcee--------------------------hH-H
Confidence 9999999999 888 7899999988743 4667766666532110000 00 0
Q ss_pred CCChHHHHHHHHHhCCCCeEEEEEeCChh-HHHHHHHHHHhcc
Q 047110 729 RPDWFNVFSKLARRHPGERIGVFYCGSLL-LGKELEGLCTTFS 770 (784)
Q Consensus 729 RPd~~~i~~~~~~~~~~~~~~V~vCGP~~-m~~~v~~~~~~~~ 770 (784)
.+......+.+..... ..||+|||++ |++.+.+++.++.
T Consensus 199 --~l~~~~~~l~~~l~~~-~~vyvCGp~~~m~~~v~~~L~~~~ 238 (267)
T cd06182 199 --KLKEHAEELRRLLNEG-AHIYVCGDAKSMAKDVEDALVKII 238 (267)
T ss_pred --HHHHhHHHHHHHHhcC-CEEEEECCcccchHHHHHHHHHHH
Confidence 0000001111111111 2699999999 9999999998873
No 58
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.91 E-value=4.9e-23 Score=219.61 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=156.5
Q ss_pred eeeeEEEEEeEeeCCCEEEEEEecCC---CceecCCcEEEEecCCCC----CCcccccccccCCC-CCeEEEEEEec---
Q 047110 493 GIYEIKNLTPSLYPGKVLSLKMQKPE---GFRYRAGMYMFVQCPEIS----PFEWHPFSLTSGPA-DDFLSVHIRAL--- 561 (784)
Q Consensus 493 ~~~~~~v~~~~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~~----~~~~HPFTIaS~p~-~~~l~l~Ir~~--- 561 (784)
.+..+++++++.+++++..++++.+. ...++||||+.|+++..+ ....||||++|.|. ++.++|+||..
T Consensus 32 ~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~ 111 (300)
T PTZ00319 32 MFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKG 111 (300)
T ss_pred ceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccC
Confidence 34567888899999999999997642 367999999999997532 14689999999886 57899999986
Q ss_pred --------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCC---------------CCCCeEEEEEcCCCHHHHH
Q 047110 562 --------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDY---------------VKYDVVLLIGLGIGATPFI 618 (784)
Q Consensus 562 --------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~---------------~~~~~vvlIagG~GItp~l 618 (784)
|..|+.|.. .++|+.+.|+||+|.+.... ...++++|||||+||||++
T Consensus 112 ~~~~~~~~G~~S~~L~~---------l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~ 182 (300)
T PTZ00319 112 VHPSFPNGGRLSQHLYH---------MKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPML 182 (300)
T ss_pred CCCCCCCCCChhhhhhc---------CCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHH
Confidence 677776643 36899999999999874311 1235899999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCch
Q 047110 619 SIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGR 698 (784)
Q Consensus 619 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~ 698 (784)
+++++++.... ..++++|+|++|+.+++ .+.++|.++++. .+++++..+++......
T Consensus 183 sml~~l~~~~~----------------~~~~i~liyg~r~~~dl-~~~~eL~~~~~~----~~~~~~~~~~~~~~~~~-- 239 (300)
T PTZ00319 183 QIIHAIKKNKE----------------DRTKVFLVYANQTEDDI-LLRKELDEAAKD----PRFHVWYTLDREATPEW-- 239 (300)
T ss_pred HHHHHHHhCCC----------------CCceEEEEEecCCHHHh-hHHHHHHHHhhC----CCEEEEEEECCCCCCCc--
Confidence 99999876431 24689999999999999 788888875432 36777666654211100
Q ss_pred hhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCC-----CCeEEEEEeCChhHHH-HHHHHHHhcc
Q 047110 699 SAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHP-----GERIGVFYCGSLLLGK-ELEGLCTTFS 770 (784)
Q Consensus 699 ~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~-----~~~~~V~vCGP~~m~~-~v~~~~~~~~ 770 (784)
....||-+- .++++...... ..+..||+|||++|++ .+++.+.+.+
T Consensus 240 -------------------------~~~~G~v~~-~~l~~~~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G 291 (300)
T PTZ00319 240 -------------------------KYGTGYVDE-EMLRAHLPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIG 291 (300)
T ss_pred -------------------------ccccceeCH-HHHHhhcCCccccccccCCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 001244442 13333222111 1245799999999999 5788887764
No 59
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.91 E-value=8.1e-23 Score=212.18 Aligned_cols=194 Identities=18% Similarity=0.213 Sum_probs=141.0
Q ss_pred CEEEEEEecC-CCceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCC-------ccHHHHHHHHHhhhcc
Q 047110 508 KVLSLKMQKP-EGFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGD-------WTYRLYGIFQEEMLGA 579 (784)
Q Consensus 508 ~v~~l~l~~p-~~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~-------~T~~L~~~~~~~~~~~ 579 (784)
++.+|+++.+ ..+.|+||||+.|.++. ...+|||||+|.|.++.++|+||..++ .|..|.+.
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~-------- 86 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRH-------- 86 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhC--------
Confidence 5899999887 57889999999999864 347899999999988899999998753 66666553
Q ss_pred CCCCCEEEEeCCCC-CCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecC
Q 047110 580 AKGFPKVYIDGPYG-ASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTRE 658 (784)
Q Consensus 580 ~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~ 658 (784)
.++|+++.|.||.| .+..+ ...+++||||||+||||++|+++++.... .+++.|++++|+
T Consensus 87 ~~~Gd~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~------------------~~~~~l~~g~r~ 147 (245)
T cd06200 87 APIGASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARAG------------------RHRNWLLFGERQ 147 (245)
T ss_pred CCCCCEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhcc------------------CCCeEEEEecCC
Confidence 25799999999866 45432 34578999999999999999999987532 246899999999
Q ss_pred CC-cHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHH
Q 047110 659 QI-SFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFS 737 (784)
Q Consensus 659 ~~-~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~ 737 (784)
.+ ++ .|.++|+++.+.. ...+++..+++.... . ..+.+.+.
T Consensus 148 ~~~d~-~~~~el~~~~~~~---~~~~~~~~~s~~~~~--~--------------------------------~~v~~~l~ 189 (245)
T cd06200 148 AAHDF-FCREELEAWQAAG---HLARLDLAFSRDQAQ--K--------------------------------RYVQDRLR 189 (245)
T ss_pred ccccH-hHHHHHHHHHHCC---CcceEEEEEccCCCC--C--------------------------------cchHHHHH
Confidence 85 66 7899999987754 345555566642110 0 01111121
Q ss_pred H----HHHhCCCCeEEEEEeCCh-hHHHHHHHHHHhc
Q 047110 738 K----LARRHPGERIGVFYCGSL-LLGKELEGLCTTF 769 (784)
Q Consensus 738 ~----~~~~~~~~~~~V~vCGP~-~m~~~v~~~~~~~ 769 (784)
+ +.+... .+..||+|||+ +|+++|++.+.+.
T Consensus 190 ~~~~~~~~~~~-~~~~vy~CGp~~~m~~~v~~~l~~~ 225 (245)
T cd06200 190 AAADELRAWVA-EGAAIYVCGSLQGMAPGVDAVLDEI 225 (245)
T ss_pred HhHHHHHHHHH-CCcEEEEECCchhhhHHHHHHHHHH
Confidence 1 111001 12469999999 9999999988764
No 60
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.90 E-value=2.5e-22 Score=222.51 Aligned_cols=214 Identities=13% Similarity=0.164 Sum_probs=150.6
Q ss_pred eeEEEEEeEeeC-----CCEEEEEEecCC-CceecCCcEEEEecCCCC----CCcccccccccCCCC-----CeEEEEEE
Q 047110 495 YEIKNLTPSLYP-----GKVLSLKMQKPE-GFRYRAGMYMFVQCPEIS----PFEWHPFSLTSGPAD-----DFLSVHIR 559 (784)
Q Consensus 495 ~~~~v~~~~~~~-----~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~----~~~~HPFTIaS~p~~-----~~l~l~Ir 559 (784)
..++|+.++.++ +++.+|+|+.+. .+.|+||||+.|.+|... +..+|||||+|.|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 557888888884 489999998765 688999999999988532 246799999998742 47999999
Q ss_pred ec----------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCC-CCCCCCeEEEEEcCCCHHHHHHHHHHHHHHh
Q 047110 560 AL----------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQ-DYVKYDVVLLIGLGIGATPFISIIRDVANNA 628 (784)
Q Consensus 560 ~~----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vvlIagG~GItp~lsil~~l~~~~ 628 (784)
.. |-.|+.|.+ .++|+++.|.||||.+.. +.....++|||||||||||++|+++++....
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~---------lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~ 293 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD---------LKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRR 293 (411)
T ss_pred EEEecCCCCcCcccchhHHhc---------CCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHh
Confidence 86 446665554 368999999999998543 2233468999999999999999999987643
Q ss_pred hhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHh
Q 047110 629 QKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQAL 708 (784)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~ 708 (784)
..+ ...+++|+|++|+.+++ .|.++|+++.+.. +++++.+++..+. ..
T Consensus 294 ~~~--------------~~~~v~L~~G~Rt~~dl-~y~~eL~~l~~~~-----~~~~~~~sr~~~~--~~---------- 341 (411)
T TIGR03224 294 DHG--------------EGGKLMLFFGARTKEEL-PYFGPLQKLPKDF-----IDINFAFSRTPEQ--PK---------- 341 (411)
T ss_pred hcC--------------CCCCEEEEEecCccccc-hHHHHHHHHHhcC-----ceEEEEeccCCcc--Cc----------
Confidence 211 24689999999999999 6778888886532 3444444442110 00
Q ss_pred hhhccCccccCCCCceeeecCCChHHHHHHHH----HhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 709 HYARTGIDIISKTPMWTHYSRPDWFNVFSKLA----RRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 709 ~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~----~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
| .+.+.+.+.. +.....+..||+|||++|++++.+++.+..
T Consensus 342 -------------------g--~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~~M~~~v~~~L~~~~ 386 (411)
T TIGR03224 342 -------------------R--YVQDAIRERAADVAALLKDPNTYIYICGLKGMEEGVLDAFRDVC 386 (411)
T ss_pred -------------------c--cHhhHHHHhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHHH
Confidence 0 0111221111 000112346999999999998888887754
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.90 E-value=4.6e-22 Score=211.31 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=149.6
Q ss_pred eeeEEEEEeEeeC----CCEEEEEEecCC-------CceecCCcEEEEecCCCCCCcccccccccCCCCCeEEEEEEe--
Q 047110 494 IYEIKNLTPSLYP----GKVLSLKMQKPE-------GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRA-- 560 (784)
Q Consensus 494 ~~~~~v~~~~~~~----~~v~~l~l~~p~-------~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~-- 560 (784)
+.++++++.+.++ +++..++|+.+. ...|+||||+.|..++. ...|||||+|.|.++.++|+||.
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~~ 122 (289)
T cd06201 45 TKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKHP 122 (289)
T ss_pred ccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeCC
Confidence 4567788888877 589999998765 46799999999987643 35799999999988899999997
Q ss_pred cCCccHHHHHHHHHhhhccCCCCCEEEEeC-CCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhccccccc
Q 047110 561 LGDWTYRLYGIFQEEMLGAAKGFPKVYIDG-PYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGS 639 (784)
Q Consensus 561 ~g~~T~~L~~~~~~~~~~~~~~~~~v~i~G-PyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~ 639 (784)
.|..|..|.++ ++|+.+.+.+ |+|.+..+ ...+++|||||||||||++|++++..
T Consensus 123 ~G~~S~~L~~l---------~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~-------------- 178 (289)
T cd06201 123 GGLCSGYLHGL---------KPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA-------------- 178 (289)
T ss_pred CccchhhHhhC---------CCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh--------------
Confidence 46677776642 5899999974 78888653 44578999999999999999998741
Q ss_pred ccCCCCCccEEEEEEEecCCC-cHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCcccc
Q 047110 640 VCKIPKGPLKAYLYWVTREQI-SFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDII 718 (784)
Q Consensus 640 ~~~~~~~~~~v~liW~~R~~~-~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~ 718 (784)
..++++|+|++|+.+ ++ +|.++|+++.+.. ..+.++..+++....+-.
T Consensus 179 ------~~~~v~L~~g~r~~~~d~-~~~~eL~~l~~~~---~~~~~~~~~s~~~~~g~v--------------------- 227 (289)
T cd06201 179 ------ARRPMHLYWGGRDPASDF-LYEDELDQYLADG---RLTQLHTAFSRTPDGAYV--------------------- 227 (289)
T ss_pred ------ccCCEEEEEEecCcccch-HHHHHHHHHHHcC---CCceEEEEECCCCCcccc---------------------
Confidence 135699999999985 66 7899999987754 344555445442110000
Q ss_pred CCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 719 SKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 719 ~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
....|.+...+ ..... ....||+|||++|++.+++.+.++.
T Consensus 228 ------~~~l~~~~~~l-~~~~~----~~~~vyiCGp~~M~~~v~~~L~~i~ 268 (289)
T cd06201 228 ------QDRLRADAERL-RRLIE----DGAQIMVCGSRAMAQGVAAVLEEIL 268 (289)
T ss_pred ------hhHHHHhHHHH-HHHHH----CCcEEEEECCHHHHHHHHHHHHHHH
Confidence 00011111111 11111 1246999999999999999988754
No 62
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.89 E-value=6.8e-23 Score=198.05 Aligned_cols=153 Identities=24% Similarity=0.461 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCc
Q 047110 602 YDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPV 681 (784)
Q Consensus 602 ~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~ 681 (784)
|+++||||||+||||++|+++++....+++ ....++|+|+|++|+.++++||.++|+++.+... ...
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~------------~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~-~~~ 67 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRG------------SSRTRRIKLVWVVRDADELEWFSPELNELLELDR-LGN 67 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----------------EEEEEEEES-TTTTHHHHHHHHHHHHHHH-HTS
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccc------------cccccceEEEEeeCchhhhhhhhHHHHHHHHHhc-ccc
Confidence 689999999999999999999999887522 2367999999999999999999999998887762 258
Q ss_pred EEEEEEEecCCCCCCchhhHHHHHH--HhhhhccCccccCCCC-ceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhH
Q 047110 682 IEMHNFLSSVYQEGDGRSAILSVIQ--ALHYARTGIDIISKTP-MWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLL 758 (784)
Q Consensus 682 l~v~i~vT~~~~~~d~~~~~~~~~~--~~~~~~~~~d~~~g~~-~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m 758 (784)
+++++|+|+.....+.......... .......+.|..+... ..+++||||+++++++.......++++|++|||++|
T Consensus 68 ~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m 147 (156)
T PF08030_consen 68 VEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSM 147 (156)
T ss_dssp EEEEEEETT-------------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHH
T ss_pred ceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHH
Confidence 9999999997655433211111100 0000112223344433 788999999999999996667778999999999999
Q ss_pred HHHHHHHHH
Q 047110 759 GKELEGLCT 767 (784)
Q Consensus 759 ~~~v~~~~~ 767 (784)
+++++++|.
T Consensus 148 ~~~vr~~v~ 156 (156)
T PF08030_consen 148 VDDVRNAVN 156 (156)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHhC
Confidence 999999874
No 63
>PLN02252 nitrate reductase [NADPH]
Probab=99.89 E-value=6.2e-22 Score=235.52 Aligned_cols=224 Identities=13% Similarity=0.153 Sum_probs=166.8
Q ss_pred eeeeeEEEEEeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEec------
Q 047110 492 SGIYEIKNLTPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRAL------ 561 (784)
Q Consensus 492 ~~~~~~~v~~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~------ 561 (784)
..+.++++++++.+++++..++|+.|.. +.++||||++|+++..+....||||++|.++ ++.++|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 4467889999999999999999987653 5789999999998754445689999999986 47899999986
Q ss_pred -----CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCC--------C--CCCCCeEEEEEcCCCHHHHHHHHHHHHH
Q 047110 562 -----GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQ--------D--YVKYDVVLLIGLGIGATPFISIIRDVAN 626 (784)
Q Consensus 562 -----g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~--------~--~~~~~~vvlIagG~GItp~lsil~~l~~ 626 (784)
|..|+.|.+ .+.|+.+.|.||+|.+.. + ....++++|||||+||||+++++++++.
T Consensus 712 ~~p~gG~~S~~L~~---------L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~ 782 (888)
T PLN02252 712 KFPNGGLMSQYLDS---------LPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILR 782 (888)
T ss_pred ccCCCCchhhHHhc---------CCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHh
Confidence 556666643 368999999999998632 1 1235799999999999999999999886
Q ss_pred HhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHH
Q 047110 627 NAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQ 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~ 706 (784)
... ..++++|+|++|+.+++ +|.++|+++++.. .+.++++..+++...+ .
T Consensus 783 ~~~----------------d~t~i~Liyg~Rt~~Di-l~~eEL~~la~~~--p~~~~v~~vls~~~~~--~--------- 832 (888)
T PLN02252 783 DPE----------------DKTEMSLVYANRTEDDI-LLREELDRWAAEH--PDRLKVWYVVSQVKRE--G--------- 832 (888)
T ss_pred ccC----------------CCCcEEEEEEECCHHHh-hHHHHHHHHHHhC--CCCEEEEEEecCCCcC--C---------
Confidence 431 34689999999999999 8999999998764 3578877666643110 0
Q ss_pred HhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHH-HHHHHHhcccC
Q 047110 707 ALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKE-LEGLCTTFSYR 772 (784)
Q Consensus 707 ~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~-v~~~~~~~~~~ 772 (784)
.....||.+- .++++..... .....||+|||++|++. ++..+.+.+.+
T Consensus 833 ----------------w~g~~GrV~~-~ll~~~l~~~-~~~~~vyiCGPp~Mi~~av~~~L~~~G~~ 881 (888)
T PLN02252 833 ----------------WKYSVGRVTE-AMLREHLPEG-GDETLALMCGPPPMIEFACQPNLEKMGYD 881 (888)
T ss_pred ----------------CCCcCCcCCH-HHHHHhcccC-CCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 0112255552 2344443322 23457999999999995 78888876543
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.89 E-value=1.7e-21 Score=202.32 Aligned_cols=204 Identities=22% Similarity=0.357 Sum_probs=152.4
Q ss_pred eEEEEEeEeeCCCEEEEEEecCCC-ceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEE--EecCCccHHHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPEG-FRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHI--RALGDWTYRLYGI 571 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~I--r~~g~~T~~L~~~ 571 (784)
..+|.+++.+++++..+++..|.. +.++||||+.|+.|. ...+|||++|.|++ +.+.|+| ++.|-.|+.+.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 367889999999999999987654 679999999999999 38999999999874 5455555 4578899888765
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEE
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAY 651 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 651 (784)
+.++.+.+.||||++.......+++++||||+|++|++++++++.+.. ...+|+
T Consensus 86 ---------k~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-----------------~~~~V~ 139 (252)
T COG0543 86 ---------KEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-----------------DANKVT 139 (252)
T ss_pred ---------cCCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-----------------CCceEE
Confidence 478999999999998764434556999999999999999999988643 247899
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCC
Q 047110 652 LYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPD 731 (784)
Q Consensus 652 liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd 731 (784)
++|+.|+++++ .+.++|.++.+. +++. +|. +.... ..|-..
T Consensus 140 ~~~G~~~~~dl-~~~~el~~~~~~-------~~~~-~~~--~~~~G----------------------------~~G~v~ 180 (252)
T COG0543 140 LLYGARTAKDL-LLLDELEELAEK-------EVHP-VTD--DGWKG----------------------------RKGFVT 180 (252)
T ss_pred EEEeccChhhc-ccHHHHHHhhcC-------cEEE-EEC--CCCCc----------------------------cCccee
Confidence 99999999999 677888877642 2322 222 11110 001110
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 732 WFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 732 ~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
.++++++... +...||+|||+.|++.+++.+.+.+.
T Consensus 181 -~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 181 -TDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred -HHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 2233333322 23469999999999999999998763
No 65
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=182.38 Aligned_cols=137 Identities=12% Similarity=0.213 Sum_probs=123.9
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.+..++++++++|..+|.|+|| .|++.||..++ +++|..+++.++.+|++. +|. | ++.|+
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G---~I~~~el~~il--------------r~lg~~~s~~ei~~l~~~-~d~-~-~~~id 73 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDG---LIDRNELGKIL--------------RSLGFNPSEAEINKLFEE-IDA-G-NETVD 73 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCC---CCcHHHHHHHH--------------HHcCCCCcHHHHHHHHHh-ccC-C-CCccC
Confidence 4678899999999999999999 99999999999 788999999999999995 777 6 49999
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 047110 151 KNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 151 f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
|.||+.+|+... .+.++++++||++||+|+||+|+.+||+++++.++. +..++.++.|++++|.|+||+|
T Consensus 74 f~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge--------~~~deev~~ll~~~d~d~dG~i 145 (160)
T COG5126 74 FPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE--------RLSDEEVEKLLKEYDEDGDGEI 145 (160)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc--------cCCHHHHHHHHHhcCCCCCceE
Confidence 999999999766 788999999999999999999999999999986443 3347778889999999999999
Q ss_pred cccCCCC
Q 047110 229 EVTNPHK 235 (784)
Q Consensus 229 ~~~eF~~ 235 (784)
+|+||++
T Consensus 146 ~~~eF~~ 152 (160)
T COG5126 146 DYEEFKK 152 (160)
T ss_pred eHHHHHH
Confidence 9999974
No 66
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.85 E-value=4.7e-20 Score=190.55 Aligned_cols=207 Identities=10% Similarity=0.012 Sum_probs=143.7
Q ss_pred EEEeEeeCCCEEEEEEecCCC---ceecCCcEEEEecCCCC-------------------CCcccccccccCC-CCCeEE
Q 047110 499 NLTPSLYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEIS-------------------PFEWHPFSLTSGP-ADDFLS 555 (784)
Q Consensus 499 v~~~~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~-------------------~~~~HPFTIaS~p-~~~~l~ 555 (784)
|++++.+++++++|+|+.|.. ..+.||||+.|.+|..+ ....|+|||++.+ ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 356788899999999988763 57899999999998643 4578999999986 568899
Q ss_pred EEEEec---CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhh
Q 047110 556 VHIRAL---GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAE 632 (784)
Q Consensus 556 l~Ir~~---g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~ 632 (784)
|.|+.. |..|+.+.+ .++|+.+.+.||+|.+... ...+++||||||+||||++++++++..
T Consensus 81 ~~v~~~~~~G~~s~~l~~---------l~~Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~------ 144 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS---------AQPGDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPA------ 144 (235)
T ss_pred EEEEeCCCCCchHHHHhh---------CCCCCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCC------
Confidence 999877 335555532 3689999999999998763 356789999999999999999997542
Q ss_pred cccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhc
Q 047110 633 FDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYAR 712 (784)
Q Consensus 633 ~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~ 712 (784)
..++++++++|+.+++. .+.+. ..++++...+.... .
T Consensus 145 --------------~~~~~~~~~~~~~~d~~-------~l~~~----~~~~~~~~~~~~~~--~---------------- 181 (235)
T cd06193 145 --------------DARGTALIEVPDAADEQ-------PLPAP----AGVEVTWLHRGGAE--A---------------- 181 (235)
T ss_pred --------------CCeEEEEEEECCHHHcc-------ccCCC----CCcEEEEEeCCCCC--c----------------
Confidence 15799999999985542 22211 24455443332110 0
Q ss_pred cCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccCCCceEEEEeeCC
Q 047110 713 TGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYRTNTRFVFHKEHF 784 (784)
Q Consensus 713 ~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~~~~~~~~~~E~F 784 (784)
++.... ++.. .. .......||+|||++|++.+++.+.+.. +.+.-++|.|.|
T Consensus 182 ---------------~~~~~~-~~~~-~~-~~~~~~~vyicGp~~mv~~v~~~l~~~~--g~~~~~i~~~~y 233 (235)
T cd06193 182 ---------------GELALL-AVRA-LA-PPAGDGYVWIAGEAGAVRALRRHLREER--GVPRAQVYASGY 233 (235)
T ss_pred ---------------chhHHH-HHhc-cc-CCCCCeEEEEEccHHHHHHHHHHHHHcc--CCCHHHEEEEEe
Confidence 000000 1111 11 1123457999999999999999997631 234456777765
No 67
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.84 E-value=7.9e-20 Score=219.33 Aligned_cols=199 Identities=19% Similarity=0.299 Sum_probs=148.4
Q ss_pred EEEEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHHh
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQEE 575 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~~ 575 (784)
+|++++.++++++.++|..|. ...++||||+.|+++..+ +.|||||+|.|. ++.++|+||..|..|..|.++
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l---- 76 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL---- 76 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC----
Confidence 467788899999999998765 357999999999997643 579999999875 578999999999999888743
Q ss_pred hhccCCCCCEE-EEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEE
Q 047110 576 MLGAAKGFPKV-YIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYW 654 (784)
Q Consensus 576 ~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW 654 (784)
++|+.+ .|.||||.+.. ....++++|||||+||||++++++++.... .+++++|
T Consensus 77 -----~~Gd~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-------------------~~v~l~~ 131 (752)
T PRK12778 77 -----NEGDYITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAAG-------------------NRVITIL 131 (752)
T ss_pred -----CCCCEeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHCC-------------------CeEEEEe
Confidence 589999 79999999875 334579999999999999999999987542 4799999
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHH
Q 047110 655 VTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFN 734 (784)
Q Consensus 655 ~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~ 734 (784)
+.|+.+++ .+.++|.++... + ...|. |.. .| ..|+ +.+
T Consensus 132 g~r~~~~l-~~~~el~~~~~~--------~-~~~t~-----dg~--------------------~g-----~~G~--v~~ 169 (752)
T PRK12778 132 GGRSKELI-ILEDEMRESSDE--------V-IIMTD-----DGS--------------------YG-----RKGL--VTD 169 (752)
T ss_pred ccCCHHHh-hhHHHHHhhcCe--------E-EEEEC-----CCC--------------------CC-----Cccc--HHH
Confidence 99999998 677777765421 1 11221 110 00 0111 223
Q ss_pred HHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 735 VFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 735 i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
.+.++..... ....||+|||+.|++.+.+.+.+.+
T Consensus 170 ~l~~~~~~~~-~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 170 GLEEVIKRET-KVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred HHHHHhhcCC-CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 4444333211 1235999999999999999997754
No 68
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.83 E-value=1.9e-19 Score=223.56 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=161.2
Q ss_pred eeeeEEEEEeE---eeCCCEEEEEEecCCC---ceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec-CCc
Q 047110 493 GIYEIKNLTPS---LYPGKVLSLKMQKPEG---FRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL-GDW 564 (784)
Q Consensus 493 ~~~~~~v~~~~---~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~-g~~ 564 (784)
.|.++++.+++ ..++++..++|..|.. +.|+|||||.|+++..+.-..|+||++|.|++ +.+.|+||.. |.+
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 46678888876 4578888888887653 47999999999986433335799999999964 6799999874 667
Q ss_pred cHHHHHHHHHhhhccCCCCCEEEEeCCCCCC----------CCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcc
Q 047110 565 TYRLYGIFQEEMLGAAKGFPKVYIDGPYGAS----------SQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFD 634 (784)
Q Consensus 565 T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~----------~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~ 634 (784)
|..|.+ .++|+++.|.||+|.. ..+....+++|||||||||||++||+++++.....
T Consensus 993 S~~L~~---------l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~---- 1059 (1167)
T PTZ00306 993 KEWISA---------LRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYV---- 1059 (1167)
T ss_pred HHHHhh---------CCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCccc----
Confidence 776642 3689999999998842 11223457899999999999999999998864210
Q ss_pred cccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccC
Q 047110 635 QVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTG 714 (784)
Q Consensus 635 ~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~ 714 (784)
...++++|+|++|+.+++ +|.++|+++++.. +++++++..+++..+.+.
T Consensus 1060 ----------~~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~~--~~~f~~~~~ls~~~~~w~------------------ 1108 (1167)
T PTZ00306 1060 ----------DSIESIRLIYAAEDVSEL-TYRELLESYRKEN--PGKFKCHFVLNNPPEGWT------------------ 1108 (1167)
T ss_pred ----------CCCceEEEEEEeCCHHHh-hHHHHHHHHHHHC--CCCEEEEEEECCCCcccC------------------
Confidence 124689999999999999 7999999998764 446888776664211100
Q ss_pred ccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhcccC
Q 047110 715 IDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSYR 772 (784)
Q Consensus 715 ~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~~ 772 (784)
-..||.+- .++++.... +.....||+|||++|++.+++.+.+.+.+
T Consensus 1109 ----------~~~G~i~~-~~l~~~l~~-~~~~~~vyiCGP~~mv~~v~~~L~~~G~~ 1154 (1167)
T PTZ00306 1109 ----------DGVGFVDR-ALLQSALQP-PSKDLLVAICGPPVMQRAVKADLLALGYN 1154 (1167)
T ss_pred ----------CCCCCCCH-HHHHHhcCC-CCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 01244432 233333221 12345799999999999999999886543
No 69
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.83 E-value=1.7e-19 Score=217.84 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=149.9
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCC-ceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHH
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEG-FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGI 571 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~ 571 (784)
...++|++++.++++++.+++..|.. ..++||||+.|+++..+ +.|||||++.|. ++.++|+||..|..|..|.+
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~- 724 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR- 724 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc-
Confidence 46788999999999999999987753 47999999999986444 579999999764 67899999999887765543
Q ss_pred HHHhhhccCCCCCEEE-EeCCCCCCCCC-C-CCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcc
Q 047110 572 FQEEMLGAAKGFPKVY-IDGPYGASSQD-Y-VKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPL 648 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~-i~GPyG~~~~~-~-~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 648 (784)
.++|+.+. |.||+|.+... . ...+++||||||+||||++++++++.... .
T Consensus 725 --------lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-------------------~ 777 (944)
T PRK12779 725 --------MAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-------------------N 777 (944)
T ss_pred --------CCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-------------------C
Confidence 25899995 99999998531 1 22368999999999999999999876532 4
Q ss_pred EEEEEEEecCCCcHHHHHHHHH---HHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCcee
Q 047110 649 KAYLYWVTREQISFEWFRDVIT---EISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWT 725 (784)
Q Consensus 649 ~v~liW~~R~~~~~~~~~~~L~---~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~ 725 (784)
+|+|+|++|+.+++ ++.++++ ++++.. ...++++ ++.. +.. .|
T Consensus 778 ~V~li~G~Rs~edl-~~~del~~L~~la~~~--~~~~~v~--~ttd----dgs--------------------~G----- 823 (944)
T PRK12779 778 HVTLISGFRAKEFL-FWTGDDERVGKLKAEF--GDQLDVI--YTTN----DGS--------------------FG----- 823 (944)
T ss_pred CEEEEEEeCCHHHh-hhHHHHHHHHHHHHHc--CCCeEEE--EEec----CCC--------------------CC-----
Confidence 69999999999887 5555544 444433 2334443 3321 100 00
Q ss_pred eecCCChHHHHHHHHHhCC---C-CeEEEEEeCChhHHHHHHHHHHhcc
Q 047110 726 HYSRPDWFNVFSKLARRHP---G-ERIGVFYCGSLLLGKELEGLCTTFS 770 (784)
Q Consensus 726 ~~GRPd~~~i~~~~~~~~~---~-~~~~V~vCGP~~m~~~v~~~~~~~~ 770 (784)
..|+.+ +.+.++..+.. + ....||+|||+.|++.+.+.+.+.+
T Consensus 824 ~~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 824 VKGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred CccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 113322 23333332221 1 1245999999999999999998764
No 70
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-19 Score=173.07 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=121.0
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
..+..+++++|+.+|.|+|| .|+.+||..++ +.+|..++++++..+++. .|.|+| |.|+|+
T Consensus 4 ~~~~~el~~~F~~fD~d~~G---~i~~~el~~~l--------------r~lg~~~t~~el~~~~~~-~D~dg~-g~I~~~ 64 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDG---KISVEELGAVL--------------RSLGQNPTEEELRDLIKE-IDLDGD-GTIDFE 64 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCC---cccHHHHHHHH--------------HHcCCCCCHHHHHHHHHH-hCCCCC-CeEcHH
Confidence 45678899999999999999 99999999999 888999999999999995 999996 999999
Q ss_pred HHHHHHHHhc--CC----HHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 047110 153 ELRDYWHRMA--GS----VDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRG 226 (784)
Q Consensus 153 ef~~~~~~~~--~~----~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG 226 (784)
||+.+|.... .. ..++++.||++||+||||+||.+||+.+|..++... ..+.++.|++++|.|+||
T Consensus 65 eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--------~~~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 65 EFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--------TDEECKEMIREVDVDGDG 136 (151)
T ss_pred HHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--------CHHHHHHHHHhcCCCCCC
Confidence 9999998766 22 356999999999999999999999999998766542 267799999999999999
Q ss_pred cccccCCCC
Q 047110 227 YLEVTNPHK 235 (784)
Q Consensus 227 ~i~~~eF~~ 235 (784)
.|+|+||.+
T Consensus 137 ~i~f~ef~~ 145 (151)
T KOG0027|consen 137 KVNFEEFVK 145 (151)
T ss_pred eEeHHHHHH
Confidence 999999964
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.80 E-value=2.1e-18 Score=210.31 Aligned_cols=199 Identities=16% Similarity=0.225 Sum_probs=146.7
Q ss_pred EEEEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCCCCcccccccccCCC-CCeEEEEEEecCCccHHHHHHHHHh
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA-DDFLSVHIRALGDWTYRLYGIFQEE 575 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~~ 575 (784)
+|++.+.++++++.+++..|. ...++|||||.|+++..+ +.+||||++.+. +++++|.|+..|..|+.|...
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~---- 76 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTK---- 76 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhc----
Confidence 467778899999999998876 467999999999987543 579999998764 578999999999999887533
Q ss_pred hhccCCCCCEE-EEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEE
Q 047110 576 MLGAAKGFPKV-YIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYW 654 (784)
Q Consensus 576 ~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW 654 (784)
.++|+.+ .+.||+|.+.. ....+++||||||+||||++|+++.+.... .+++++|
T Consensus 77 ----lk~Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-------------------~~v~li~ 132 (1006)
T PRK12775 77 ----FKAGDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-------------------ARTTGII 132 (1006)
T ss_pred ----CCCCCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-------------------CcEEEEE
Confidence 2589998 79999998764 344679999999999999999999876532 4599999
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCC-ChH
Q 047110 655 VTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRP-DWF 733 (784)
Q Consensus 655 ~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRP-d~~ 733 (784)
+.|+.+++ ++.++|..+.. .+ +++.. |. .+|+. .+.
T Consensus 133 g~R~~~~l-~~~del~~~~~------~~----~v~td----dg----------------------------s~G~~G~vt 169 (1006)
T PRK12775 133 GFRNKDLV-FWEDKFGKYCD------DL----IVCTD----DG----------------------------SYGKPGFVT 169 (1006)
T ss_pred eCCChHHc-ccHHHHHhhcC------cE----EEEEC----CC----------------------------CCCCCCChH
Confidence 99999887 66777765432 11 33221 11 01111 123
Q ss_pred HHHHHHHHhCCCCeEEEEEeCChhHHHHHHHHHHhccc
Q 047110 734 NVFSKLARRHPGERIGVFYCGSLLLGKELEGLCTTFSY 771 (784)
Q Consensus 734 ~i~~~~~~~~~~~~~~V~vCGP~~m~~~v~~~~~~~~~ 771 (784)
+.+.++..... ...||+|||+.|++.+.+.+++++.
T Consensus 170 ~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 170 AALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred HHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCCC
Confidence 34444332221 1259999999999999999887643
No 72
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.78 E-value=6.6e-19 Score=171.05 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=121.9
Q ss_pred CChhHHHHHHHHHHHccc-CCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcc-c
Q 047110 72 TNLEWTDVEARFDRLAYT-KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVD-I 149 (784)
Q Consensus 72 ~~~~~~~l~~~F~~~d~~-~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~-I 149 (784)
+.+|+..|+.+|.++|.+ ++| .|+.+||..+. ... .+....++++ .++.+++ |. |
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g---~lt~eef~~i~-----------------~~~-~Np~~~rI~~-~f~~~~~-~~~v 84 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDG---YLTKEEFLSIP-----------------ELA-LNPLADRIID-RFDTDGN-GDPV 84 (187)
T ss_pred CHHHHHHHHHHHHHhccccccC---ccCHHHHHHHH-----------------HHh-cCcHHHHHHH-HHhccCC-CCcc
Confidence 467899999999999998 888 89999999998 222 2246889999 5888884 77 9
Q ss_pred cHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 047110 150 TKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGY 227 (784)
Q Consensus 150 ~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~ 227 (784)
+|+||+..++.+. ...++|++.||++||.|+||+|+++|+.+++.....++... .+++.+++++.+|.++|.|+||+
T Consensus 85 ~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 85 DFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred CHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999988 66667999999999999999999999999998766654333 68999999999999999999999
Q ss_pred ccccCCCC
Q 047110 228 LEVTNPHK 235 (784)
Q Consensus 228 i~~~eF~~ 235 (784)
|+|+||++
T Consensus 164 IsfeEf~~ 171 (187)
T KOG0034|consen 164 ISFEEFCK 171 (187)
T ss_pred CcHHHHHH
Confidence 99999984
No 73
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.78 E-value=1.8e-20 Score=167.35 Aligned_cols=100 Identities=36% Similarity=0.818 Sum_probs=7.1
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCCC-ceecCCcEEEEecCCCC--CCcccccccccCCCCCeEEEEEEecCCccHHHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPEG-FRYRAGMYMFVQCPEIS--PFEWHPFSLTSGPADDFLSVHIRALGDWTYRLYGI 571 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~~--~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T~~L~~~ 571 (784)
.++++++++.+++++++|+++.|.. ++|+||||+||++|.++ .+|||||||+|.|+++.++++||+.||||++|.+.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 3567788899999999999999875 99999999999999999 56999999999999999999999999999999998
Q ss_pred HHHhhhccCCCCCEEEEeCCCCCC
Q 047110 572 FQEEMLGAAKGFPKVYIDGPYGAS 595 (784)
Q Consensus 572 ~~~~~~~~~~~~~~v~i~GPyG~~ 595 (784)
+.+.. .......++.||||||.+
T Consensus 82 ~~~~~-~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESP-SKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ----------------TTSTTSHH
T ss_pred Hhhhc-ccCCCceEEEEECCCCCC
Confidence 75531 112357799999999974
No 74
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.3e-17 Score=151.70 Aligned_cols=135 Identities=15% Similarity=0.186 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
.++.++++..|+.+|.|++| +|+.+||..++ +++|.++.++++.+|... .|+++ +|.|+|+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g---~iD~~EL~vAm--------------ralGFE~~k~ei~kll~d-~dk~~-~g~i~fe 89 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAG---KIDVEELKVAM--------------RALGFEPKKEEILKLLAD-VDKEG-SGKITFE 89 (172)
T ss_pred HHHHhhHHHHHHhhccCCCC---cccHHHHHHHH--------------HHcCCCcchHHHHHHHHh-hhhcc-CceechH
Confidence 45567899999999998899 89999999999 888999999999999995 89999 6999999
Q ss_pred HHHHHHHHh-c-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccc
Q 047110 153 ELRDYWHRM-A-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEV 230 (784)
Q Consensus 153 ef~~~~~~~-~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~ 230 (784)
+|...|+.. + .++.++++.||+++|.|++|.||..+|+++++.++.. + .++...+||+++|.|+||.|+-
T Consensus 90 ~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen--l------tD~El~eMIeEAd~d~dgevne 161 (172)
T KOG0028|consen 90 DFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN--L------TDEELMEMIEEADRDGDGEVNE 161 (172)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc--c------cHHHHHHHHHHhcccccccccH
Confidence 999999854 4 7899999999999999999999999999999875542 3 3566788999999999999999
Q ss_pred cCCC
Q 047110 231 TNPH 234 (784)
Q Consensus 231 ~eF~ 234 (784)
+||-
T Consensus 162 eEF~ 165 (172)
T KOG0028|consen 162 EEFI 165 (172)
T ss_pred HHHH
Confidence 9984
No 75
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.74 E-value=9.1e-18 Score=162.98 Aligned_cols=145 Identities=18% Similarity=0.233 Sum_probs=120.7
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.+..++.++++-|...+ +.| .++.++|+.+++ .......+..+++.+|+. +|.|+| |.|+
T Consensus 23 f~~~ei~~~Yr~Fk~~c--P~G---~~~~~~F~~i~~-------------~~fp~gd~~~y~~~vF~~-fD~~~d-g~i~ 82 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKNEC--PSG---RLTLEEFREIYA-------------SFFPDGDASKYAELVFRT-FDKNKD-GTID 82 (193)
T ss_pred CCHHHHHHHHHHhcccC--CCC---ccCHHHHHHHHH-------------HHCCCCCHHHHHHHHHHH-hcccCC-CCcC
Confidence 45667777888888877 699 999999999983 222345566789999995 999996 9999
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhcc---CCCCCChHHHHHHHHHHHHHcCCCCCC
Q 047110 151 KNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASA---NKLSMTHEEAQEYAASIMEFLDTKKRG 226 (784)
Q Consensus 151 f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~d~dG 226 (784)
|+||+..++... +..+++++++|++||.||||+||++|+-.+++....- ......++..++.++.+|..+|.|+||
T Consensus 83 F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg 162 (193)
T KOG0044|consen 83 FLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDG 162 (193)
T ss_pred HHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCC
Confidence 999999999998 9999999999999999999999999999999653321 112233566888899999999999999
Q ss_pred cccccCCCC
Q 047110 227 YLEVTNPHK 235 (784)
Q Consensus 227 ~i~~~eF~~ 235 (784)
.||++||.-
T Consensus 163 ~lT~eef~~ 171 (193)
T KOG0044|consen 163 KLTLEEFIE 171 (193)
T ss_pred cccHHHHHH
Confidence 999999983
No 76
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.73 E-value=3.2e-17 Score=179.56 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=128.7
Q ss_pred CceecCCcEEEEecCCCCCCcccccccccCCC--CCeEEEEEEec----------CCccHHHHHHHHHhhhccCCCCCEE
Q 047110 519 GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRAL----------GDWTYRLYGIFQEEMLGAAKGFPKV 586 (784)
Q Consensus 519 ~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~~~~~v 586 (784)
+.++.|||++.+..| + ..|+|||+|+|. ++.++++|+.. |-.|..|.+. .++|+.+
T Consensus 129 ~~~~~~gq~l~l~~~-~---~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~--------~~~Gd~v 196 (360)
T cd06199 129 PARLTAEELLDLLRP-L---QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADR--------LKEGDTV 196 (360)
T ss_pred CCCCCHHHHHHhCcC-C---CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhc--------CCCCCEE
Confidence 357889999999744 3 679999999996 47899998854 4455555543 2479999
Q ss_pred EEeCCC-CCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHH
Q 047110 587 YIDGPY-GASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEW 664 (784)
Q Consensus 587 ~i~GPy-G~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~ 664 (784)
.+.+|. |.+..+.....++|||||||||||++|++++..... ...++.|+|++|+. +++ .
T Consensus 197 ~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-----------------~~~~~~L~~G~R~~~~D~-~ 258 (360)
T cd06199 197 PVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-----------------AKGKNWLFFGERHFATDF-L 258 (360)
T ss_pred EEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-----------------CCCcEEEEEcCCCCccch-h
Confidence 999754 567654444679999999999999999999876532 24678999999997 566 7
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCC
Q 047110 665 FRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHP 744 (784)
Q Consensus 665 ~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~ 744 (784)
|.++|+++.+.. ..++++..+++.... . . +.|..-. -+.+++.+ +..
T Consensus 259 y~~el~~~~~~~---~~~~~~~a~Sr~~~~--~--~---yVq~~l~-------------------~~~~~~~~-~~~--- 305 (360)
T cd06199 259 YQDELQQWLKDG---VLTRLDTAFSRDQAE--K--V---YVQDRMR-------------------EQGAELWA-WLE--- 305 (360)
T ss_pred HHHHHHHHHHcC---CCeEEEEEEccCCCC--C--c---cHHHHHH-------------------HhHHHHHH-HHh---
Confidence 899999988653 345666666653210 0 0 0000000 00011111 111
Q ss_pred CCeEEEEEeCCh-hHHHHHHHHHHhcc
Q 047110 745 GERIGVFYCGSL-LLGKELEGLCTTFS 770 (784)
Q Consensus 745 ~~~~~V~vCGP~-~m~~~v~~~~~~~~ 770 (784)
++..||+|||+ .|.++|++++.++.
T Consensus 306 -~~~~vYvCG~~~~M~~~V~~~L~~i~ 331 (360)
T cd06199 306 -EGAHFYVCGDAKRMAKDVDAALLDII 331 (360)
T ss_pred -CCCEEEEECCCccccHHHHHHHHHHH
Confidence 12459999999 89999999987754
No 77
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.72 E-value=5.9e-17 Score=179.27 Aligned_cols=190 Identities=14% Similarity=0.184 Sum_probs=126.3
Q ss_pred ecCCcEEEEecCCCCCCcccccccccCCC--CCeEEEEEEe------------cCCccHHHHHHHHHhhhccCCCCCEEE
Q 047110 522 YRAGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRA------------LGDWTYRLYGIFQEEMLGAAKGFPKVY 587 (784)
Q Consensus 522 ~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~------------~g~~T~~L~~~~~~~~~~~~~~~~~v~ 587 (784)
...||++.+. |.+ +.|||||+|+|. ++.+++.|+. .|..|..|.+ .++|+.+.
T Consensus 147 ~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~ 213 (384)
T cd06206 147 LPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS---------LRPGDSIH 213 (384)
T ss_pred CCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh---------CCCCCeEE
Confidence 3568888886 544 789999999985 3556666665 3445555532 35788877
Q ss_pred E--eCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHH
Q 047110 588 I--DGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEW 664 (784)
Q Consensus 588 i--~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~ 664 (784)
+ .||+|.+..+....+++|||||||||||++|++++.......+ ....++.|+|++|+. +++ .
T Consensus 214 v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-------------~~~~~v~L~~G~R~~~~d~-l 279 (384)
T cd06206 214 VSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG-------------RKLAPALLFFGCRHPDHDD-L 279 (384)
T ss_pred EEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC-------------CCcCCEEEEEeCCCCCccc-c
Confidence 5 6999998765555689999999999999999999876543211 124679999999999 666 7
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCC
Q 047110 665 FRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHP 744 (784)
Q Consensus 665 ~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~ 744 (784)
|.++|+++++.. .++++..+++....... .+. ++ +.+..+.+.+...
T Consensus 280 y~~el~~~~~~~----~~~l~~a~Sr~~~~~~~--------------------------yVq-~~--i~~~~~~~~~~~~ 326 (384)
T cd06206 280 YRDELEEWEAAG----VVSVRRAYSRPPGGGCR--------------------------YVQ-DR--LWAEREEVWELWE 326 (384)
T ss_pred hHHHHHHHHHCC----CeEEEEEecccCCCCCE--------------------------ech-hh--HHhhHHHHHHHHH
Confidence 899999988743 56776666653211000 000 00 0000111111111
Q ss_pred CCeEEEEEeCChhHHHHHHHHHHhcccC
Q 047110 745 GERIGVFYCGSLLLGKELEGLCTTFSYR 772 (784)
Q Consensus 745 ~~~~~V~vCGP~~m~~~v~~~~~~~~~~ 772 (784)
++..||+|||++|+++|++++.++..+
T Consensus 327 -~~~~vyiCGp~~M~~~v~~~L~~i~~~ 353 (384)
T cd06206 327 -QGARVYVCGDGRMAPGVREVLKRIYAE 353 (384)
T ss_pred -CCcEEEEECCCchHHHHHHHHHHHHHH
Confidence 234699999999999999999876543
No 78
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.71 E-value=1.1e-16 Score=176.88 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=122.7
Q ss_pred CCcccccccccCCC--CCeEEEEEEec-----------CCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCC
Q 047110 537 PFEWHPFSLTSGPA--DDFLSVHIRAL-----------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYD 603 (784)
Q Consensus 537 ~~~~HPFTIaS~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~ 603 (784)
..+.|||||+|+|. ++.++|+|+.. |-.|..|.+ .++|+.+.+.||+|.+..+.....
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~---------l~~Gd~v~v~~p~g~F~lp~~~~~ 231 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG---------LKVGQRVTVFIKKSSFKLPKDPKK 231 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh---------cCCCCEEEEEEECCcccCCCCCCC
Confidence 34889999999996 47899999976 334444432 358999999999999876544467
Q ss_pred eEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHHHHHHHHHHHHhcCCCCcE
Q 047110 604 VVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEWFRDVITEISKIYLKQPVI 682 (784)
Q Consensus 604 ~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~~~~~L~~l~~~~~~~~~l 682 (784)
++|||||||||||++|++++.....+.+ ....++.|+|++|+. +++ .|.++|+++.+.. ..+
T Consensus 232 plImIa~GtGIAP~rs~l~~~~~~~~~~-------------~~~~~~~L~~G~R~~~~d~-~y~~el~~~~~~~---~~~ 294 (382)
T cd06207 232 PIIMVGPGTGLAPFRAFLQERAALLAQG-------------PEIGPVLLYFGCRHEDKDY-LYKEELEEYEKSG---VLT 294 (382)
T ss_pred CEEEEcCCccHHHHHHHHHHHHHHhhcC-------------ccCCCEEEEECCCCCCccc-cHHHHHHHHHhCC---CCc
Confidence 8999999999999999999876543211 135789999999998 666 7999999988753 345
Q ss_pred EEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCChh-HHHH
Q 047110 683 EMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSLL-LGKE 761 (784)
Q Consensus 683 ~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~~-m~~~ 761 (784)
++++.+++.... . . +.|. ..+-+.+.+.+.+ . .+...||+|||++ |+++
T Consensus 295 ~~~~a~Srd~~~--~--~---yVq~-------------------~l~~~~~~~~~~l-~---~~~~~vYvCG~~~~M~~~ 344 (382)
T cd06207 295 TLGTAFSRDQPK--K--V---YVQD-------------------LIRENSDLVYQLL-E---EGAGVIYVCGSTWKMPPD 344 (382)
T ss_pred eEEEEecCCCCC--c--e---EhHH-------------------HHHHCHHHHHHHH-h---cCCCEEEEECCcccccHH
Confidence 666666653110 0 0 0000 0011111121111 1 1223599999998 9999
Q ss_pred HHHHHHhccc
Q 047110 762 LEGLCTTFSY 771 (784)
Q Consensus 762 v~~~~~~~~~ 771 (784)
|++++.++..
T Consensus 345 V~~~L~~~~~ 354 (382)
T cd06207 345 VQEAFEEILK 354 (382)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 79
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.70 E-value=1.1e-16 Score=185.52 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=128.5
Q ss_pred ceecCCcEEEEecCCCCCCcccccccccCCC--CCeEEEEEEec----------CCccHHHHHHHHHhhhccCCCCCEEE
Q 047110 520 FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRAL----------GDWTYRLYGIFQEEMLGAAKGFPKVY 587 (784)
Q Consensus 520 ~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~~~~~v~ 587 (784)
.++.||||+.+..| .+.|||||+|+|. ++.+.|+|+.. |..|..|.+. .++|+++.
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~--------l~~Gd~v~ 434 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAER--------LKEGDTVP 434 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhh--------CCCCCEEE
Confidence 47899999999865 3789999999985 57899999864 6677766653 35799999
Q ss_pred EeCCC-CCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecC-CCcHHHH
Q 047110 588 IDGPY-GASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTRE-QISFEWF 665 (784)
Q Consensus 588 i~GPy-G~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~-~~~~~~~ 665 (784)
|.||. |.|..+.....++|||||||||||++++++++.... ...+++|+|++|+ .+++ .|
T Consensus 435 v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-----------------~~g~~~LffG~R~~~~D~-ly 496 (597)
T TIGR01931 435 VYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-----------------AKGKNWLFFGNPHFTTDF-LY 496 (597)
T ss_pred EEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-----------------CCCCEEEEECCCCCCcch-hH
Confidence 99865 467654445578999999999999999999876543 2467999999999 5566 78
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHh---
Q 047110 666 RDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARR--- 742 (784)
Q Consensus 666 ~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~--- 742 (784)
.++|+++.+.. ...+++..+++... .. .-+++.+.+....
T Consensus 497 ~~El~~~~~~~---~l~~l~~afSRd~~--~k--------------------------------~yVqd~l~e~~~~~~~ 539 (597)
T TIGR01931 497 QVEWQNYLKKG---VLTKMDLAFSRDQA--EK--------------------------------IYVQHRIREQGAELWQ 539 (597)
T ss_pred HHHHHHHHHcC---CCceeEEEEecCCC--CC--------------------------------ccHHHHHHHhHHHHHH
Confidence 99999887654 22344455555210 00 0011122211110
Q ss_pred -CCCCeEEEEEeC-ChhHHHHHHHHHHhcc
Q 047110 743 -HPGERIGVFYCG-SLLLGKELEGLCTTFS 770 (784)
Q Consensus 743 -~~~~~~~V~vCG-P~~m~~~v~~~~~~~~ 770 (784)
.. +...||+|| |+.|+++|++++.++.
T Consensus 540 ~l~-~~a~vYvCG~~~~M~~~V~~~L~~i~ 568 (597)
T TIGR01931 540 WLQ-EGAHIYVCGDAKKMAKDVHQALLDII 568 (597)
T ss_pred HHh-CCcEEEEECCCccccHHHHHHHHHHH
Confidence 00 124699999 8899999999987754
No 80
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.63 E-value=6e-15 Score=163.73 Aligned_cols=135 Identities=17% Similarity=0.193 Sum_probs=98.2
Q ss_pred CcccccccccCCCC--CeEEEEEEec-----CCccHHHHHHHHHhhhccCCCCCEEEEeC-CCCCCCCCCC-CCCeEEEE
Q 047110 538 FEWHPFSLTSGPAD--DFLSVHIRAL-----GDWTYRLYGIFQEEMLGAAKGFPKVYIDG-PYGASSQDYV-KYDVVLLI 608 (784)
Q Consensus 538 ~~~HPFTIaS~p~~--~~l~l~Ir~~-----g~~T~~L~~~~~~~~~~~~~~~~~v~i~G-PyG~~~~~~~-~~~~vvlI 608 (784)
.+.|+|||+|+|.. +.++|+|+.. |-.|..|.++.... ...|+.+.+.| |.|.|..+.. ...++|||
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~----~~~G~~v~i~~~~~g~F~lp~~~~~~piImI 247 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA----SSHGVKVPFYLRSSSRFRLPPDDLRRPIIMV 247 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh----cCCCCEEEEEEecCCCcCCCCcCCCCCEEEE
Confidence 47899999999964 7899998875 44676666553211 12688999999 6777766444 45789999
Q ss_pred EcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHHHHHHHHHHHHhcCCCCcEEEEEE
Q 047110 609 GLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEWFRDVITEISKIYLKQPVIEMHNF 687 (784)
Q Consensus 609 agG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~~~~~L~~l~~~~~~~~~l~v~i~ 687 (784)
||||||||++|++++.....+.. ......++.|+|++|+. +++ .|.++|+++.+.. ...++++.
T Consensus 248 a~GtGIAP~rs~lq~~~~~~~~~-----------~~~~~~~~~Lf~G~R~~~~d~-~y~~El~~~~~~~---~~~~~~~a 312 (398)
T cd06203 248 GPGTGVAPFLGFLQHREKLKESH-----------TETVFGEAWLFFGCRHRDRDY-LFRDELEEFLEEG---ILTRLIVA 312 (398)
T ss_pred cCCcChHHHHHHHHHHHHHHhhc-----------ccCCCCCEEEEEeCCCCCcch-hHHHHHHHHHHcC---CCceEEEE
Confidence 99999999999999876532110 01134679999999999 566 7899999998754 34456666
Q ss_pred EecC
Q 047110 688 LSSV 691 (784)
Q Consensus 688 vT~~ 691 (784)
+++.
T Consensus 313 ~SRd 316 (398)
T cd06203 313 FSRD 316 (398)
T ss_pred ECCC
Confidence 6653
No 81
>PTZ00184 calmodulin; Provisional
Probab=99.63 E-value=2.8e-15 Score=143.30 Aligned_cols=137 Identities=14% Similarity=0.177 Sum_probs=115.9
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.++.+++++++.|+.+|.|++| .|+.+||..++ ..++.+...+.+..+|+ .+|.+++ |.|+
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G---~i~~~e~~~~l--------------~~~~~~~~~~~~~~~~~-~~d~~~~-g~i~ 65 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDG---TITTKELGTVM--------------RSLGQNPTEAELQDMIN-EVDADGN-GTID 65 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCC---cCCHHHHHHHH--------------HHhCCCCCHHHHHHHHH-hcCcCCC-CcCc
Confidence 3456788899999999999999 99999999988 34466666778999999 5999995 9999
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 047110 151 KNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 151 f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
|+||+.++.... ...++.++.+|+.||.|++|+|+.+|++.+++..+. .++ .+.++.+|..+|.|++|.|
T Consensus 66 ~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~------~~~~~~~~~~~d~~~~g~i 137 (149)
T PTZ00184 66 FPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KLT------DEEVDEMIREADVDGDGQI 137 (149)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CCC------HHHHHHHHHhcCCCCCCcC
Confidence 999999988654 567788999999999999999999999999976422 122 4557778999999999999
Q ss_pred cccCCC
Q 047110 229 EVTNPH 234 (784)
Q Consensus 229 ~~~eF~ 234 (784)
+|+||.
T Consensus 138 ~~~ef~ 143 (149)
T PTZ00184 138 NYEEFV 143 (149)
T ss_pred cHHHHH
Confidence 999996
No 82
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.62 E-value=1e-14 Score=144.48 Aligned_cols=228 Identities=19% Similarity=0.290 Sum_probs=155.7
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCC--CceecCCcEEEEecCCCC--------------CC---------------ccccc
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPE--GFRYRAGMYMFVQCPEIS--------------PF---------------EWHPF 543 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~~--------------~~---------------~~HPF 543 (784)
+.++|++......=+.+|.+..|. ...|+||-|+.|.+|.-. -| ..+.|
T Consensus 135 WectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAY 214 (410)
T COG2871 135 WECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAY 214 (410)
T ss_pred eeEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHh
Confidence 455665544333335566666654 678999999999998531 01 14789
Q ss_pred ccccCCCC-CeEEEEEEecCC-cc--HHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHH
Q 047110 544 SLTSGPAD-DFLSVHIRALGD-WT--YRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFIS 619 (784)
Q Consensus 544 TIaS~p~~-~~l~l~Ir~~g~-~T--~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~ls 619 (784)
|++|-|++ +.+.|-||.... .. ..-.+.++...+ ..++|++|.|.||||.+.. -+....+|+|+||.|.+|+.|
T Consensus 215 SmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~-sLKpGDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRS 292 (410)
T COG2871 215 SMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIW-SLKPGDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRS 292 (410)
T ss_pred hhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEE-eecCCCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHH
Confidence 99999986 667888886521 00 001122222211 2479999999999999875 345568999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchh
Q 047110 620 IIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRS 699 (784)
Q Consensus 620 il~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~ 699 (784)
.+-+++.+.. ..|++.|-++.|+..+. .|.++.++|++. .+++.-|+.++.+.++.+-
T Consensus 293 HIfDqL~rlh----------------SkRkis~WYGARS~rE~-fY~Ed~d~L~ae---~pNF~wH~aLSdplpEDnW-- 350 (410)
T COG2871 293 HIFDQLKRLH----------------SKRKISFWYGARSLREM-FYQEDFDQLQAE---NPNFHWHLALSDPLPEDNW-- 350 (410)
T ss_pred HHHHHHHhhc----------------ccceeeeeeccchHHHh-HHHHHHHHHHhh---CCCcEEEEEecCCCCcCCc--
Confidence 9988887653 45889999999999998 788999999876 4788888888865443211
Q ss_pred hHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH-HHHHHhCC-CCeEEEEEeCChhHHHHHHHHHHhcccC
Q 047110 700 AILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF-SKLARRHP-GERIGVFYCGSLLLGKELEGLCTTFSYR 772 (784)
Q Consensus 700 ~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~-~~~~~~~~-~~~~~V~vCGP~~m~~~v~~~~~~~~~~ 772 (784)
.+ .+|. +..++ ....+.++ .++...|+||||-|..+|-+.+.+++..
T Consensus 351 -----------~g-----~TgF----------ihnv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 351 -----------DG-----YTGF----------IHNVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred -----------cc-----chhH----------HHHHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCcc
Confidence 00 1110 00111 11222332 3678899999999999999999998654
No 83
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.61 E-value=9.7e-15 Score=162.84 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=120.4
Q ss_pred CcccccccccCCC--CCeEEEEEEec-----------CCccHHHHHHHHHhh------------hccCCCCCEEEEeCCC
Q 047110 538 FEWHPFSLTSGPA--DDFLSVHIRAL-----------GDWTYRLYGIFQEEM------------LGAAKGFPKVYIDGPY 592 (784)
Q Consensus 538 ~~~HPFTIaS~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~------------~~~~~~~~~v~i~GPy 592 (784)
.+.|+|||+|+|. ++.+++.|+.. |-.|..|.+...... .....+|+.+.+.+|.
T Consensus 176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~ 255 (416)
T cd06204 176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR 255 (416)
T ss_pred CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence 4899999999995 46788888754 445566655432100 0001168899999999
Q ss_pred CCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHHHHHHHHH
Q 047110 593 GASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEWFRDVITE 671 (784)
Q Consensus 593 G~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~~~~~L~~ 671 (784)
|.|..+.....++|||||||||||++|++++.....+.+ ....++.|+|++|+. +++ .|.++|++
T Consensus 256 g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-------------~~~~~v~L~~G~R~~~~d~-ly~~el~~ 321 (416)
T cd06204 256 SNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG-------------KKVGPTLLFFGCRHPDEDF-IYKDELEE 321 (416)
T ss_pred CCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc-------------CccCCEEEEEcCCCCCccc-chHHHHHH
Confidence 988765455679999999999999999999876543211 124679999999998 566 78999999
Q ss_pred HHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHH----HHHhCCCCe
Q 047110 672 ISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSK----LARRHPGER 747 (784)
Q Consensus 672 l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~----~~~~~~~~~ 747 (784)
+.+.. ..++++..+++... .. ..+++.+.+ +.+... +.
T Consensus 322 ~~~~~---~~~~l~~a~Sr~~~--~k--------------------------------~yVq~~i~~~~~~~~~~l~-~~ 363 (416)
T cd06204 322 YAKLG---GLLELVTAFSREQP--KK--------------------------------VYVQHRLAEHAEQVWELIN-EG 363 (416)
T ss_pred HHHcC---CceEEEEEECcCCC--CC--------------------------------cchHHHHHHhHHHHHHHHH-cC
Confidence 88743 45666666665311 00 001111111 111011 12
Q ss_pred EEEEEeCChh-HHHHHHHHHHhcc
Q 047110 748 IGVFYCGSLL-LGKELEGLCTTFS 770 (784)
Q Consensus 748 ~~V~vCGP~~-m~~~v~~~~~~~~ 770 (784)
..||+|||++ |+++|++++.++.
T Consensus 364 ~~vYvCGp~~~M~~~V~~~L~~i~ 387 (416)
T cd06204 364 AYIYVCGDAKNMARDVEKTLLEIL 387 (416)
T ss_pred CEEEEECCcccchHHHHHHHHHHH
Confidence 4699999998 9999999987753
No 84
>PRK06214 sulfite reductase; Provisional
Probab=99.61 E-value=2.1e-14 Score=162.23 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=90.0
Q ss_pred CCcccccccccCCC--CCeEEEEEEec----------CCccHHHHHHHHHhhhccCCCCCEEEEe--CCCCCCCCCCCCC
Q 047110 537 PFEWHPFSLTSGPA--DDFLSVHIRAL----------GDWTYRLYGIFQEEMLGAAKGFPKVYID--GPYGASSQDYVKY 602 (784)
Q Consensus 537 ~~~~HPFTIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~~~~~v~i~--GPyG~~~~~~~~~ 602 (784)
+.+.|||||+|+|. ++.++|+|+.. |-.|..|.+ ..++|+.+.|. +|+| |..+....
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~--------~l~~Gd~V~v~i~~~~g-F~lp~~~~ 383 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGE--------RLAPGTRVRVYVQKAHG-FALPADPN 383 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHh--------cCCCCCEEEEEecCCCC-CccCCCCC
Confidence 35899999999985 57899999865 444444432 34578877774 5666 65544445
Q ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcE
Q 047110 603 DVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVI 682 (784)
Q Consensus 603 ~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l 682 (784)
.++||||+||||||++|++++..... ...+++|+|++|+.+.-..|.++|+++.+.. ...
T Consensus 384 ~PiImIg~GTGIAPfrsfLq~r~~~~-----------------~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g---~l~ 443 (530)
T PRK06214 384 TPIIMVGPGTGIAPFRAFLHERAATK-----------------APGRNWLFFGHQRSATDFFYEDELNGLKAAG---VLT 443 (530)
T ss_pred CCEEEEcCCeeHHHHHHHHHHHHHhc-----------------CCCCeEEEEEecCChhhhHHHHHHHHHHHhC---Cce
Confidence 78999999999999999999865432 2356899999976543337999999998754 334
Q ss_pred EEEEEEec
Q 047110 683 EMHNFLSS 690 (784)
Q Consensus 683 ~v~i~vT~ 690 (784)
++++..++
T Consensus 444 ~l~~afSR 451 (530)
T PRK06214 444 RLSLAWSR 451 (530)
T ss_pred EEEEEEec
Confidence 45556665
No 85
>PTZ00183 centrin; Provisional
Probab=99.60 E-value=7.3e-15 Score=142.01 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=115.8
Q ss_pred CChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 72 TNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 72 ~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
++.+.+++.+.|..+|.|++| .|+.+||..++ +.+|.......+..+|. .+|.+++ |.|+|
T Consensus 12 ~~~~~~~~~~~F~~~D~~~~G---~i~~~e~~~~l--------------~~~g~~~~~~~~~~l~~-~~d~~~~-g~i~~ 72 (158)
T PTZ00183 12 TEDQKKEIREAFDLFDTDGSG---TIDPKELKVAM--------------RSLGFEPKKEEIKQMIA-DVDKDGS-GKIDF 72 (158)
T ss_pred CHHHHHHHHHHHHHhCCCCCC---cccHHHHHHHH--------------HHhCCCCCHHHHHHHHH-HhCCCCC-CcEeH
Confidence 356778899999999999999 99999999999 45576667778999999 5999995 99999
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCccc
Q 047110 152 NELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLE 229 (784)
Q Consensus 152 ~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~ 229 (784)
+||+..+.... ...++.++.+|+.+|.|++|.|+.+||..++...+. .++ ++.++.+|..+|.|++|.|+
T Consensus 73 ~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~------~~~~~~~~~~~d~~~~g~i~ 144 (158)
T PTZ00183 73 EEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TIT------DEELQEMIDEADRNGDGEIS 144 (158)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCC------HHHHHHHHHHhCCCCCCcCc
Confidence 99999887643 566788999999999999999999999999975332 122 45577899999999999999
Q ss_pred ccCCC
Q 047110 230 VTNPH 234 (784)
Q Consensus 230 ~~eF~ 234 (784)
++||.
T Consensus 145 ~~ef~ 149 (158)
T PTZ00183 145 EEEFY 149 (158)
T ss_pred HHHHH
Confidence 99996
No 86
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.60 E-value=1.8e-14 Score=160.10 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=114.6
Q ss_pred CcccccccccCCC--CCeEEEEEEec-------------CCccHHHHHHHHHhhhccCCCCCEEEEeCCC-CCCCCCCCC
Q 047110 538 FEWHPFSLTSGPA--DDFLSVHIRAL-------------GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPY-GASSQDYVK 601 (784)
Q Consensus 538 ~~~HPFTIaS~p~--~~~l~l~Ir~~-------------g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPy-G~~~~~~~~ 601 (784)
.+.|+|||+|+|. ++.+.+.|+.. |-.|..|. ..++|+.+.+.+|. |.+..+...
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~---------~l~~Gd~v~v~~~~~~~F~lp~~~ 245 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLN---------GLTPGDTVPCFVRSAPSFHLPEDP 245 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHH---------hCCCCCEEEEEEeeCCccCCCCCC
Confidence 3789999999995 46777777653 33444332 24689999988754 356554445
Q ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCC-CcHHHHHHHHHHHHHhcCCCC
Q 047110 602 YDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQ-ISFEWFRDVITEISKIYLKQP 680 (784)
Q Consensus 602 ~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~-~~~~~~~~~L~~l~~~~~~~~ 680 (784)
..++|||||||||||++|++++.....+... .......++.|++++|+. +++ .|.++|+++.+.. .
T Consensus 246 ~~piImIa~GTGIAPfrsflq~r~~~~~~~~---------~~~~~~g~v~L~~G~R~~~~d~-ly~~El~~~~~~~---~ 312 (406)
T cd06202 246 SVPVIMVGPGTGIAPFRSFWQQRQYDLRMSE---------DPGKKFGDMTLFFGCRNSTIDD-IYKEETEEAKNKG---V 312 (406)
T ss_pred CCCEEEEcCCcChHHHHHHHHHHHHHhhhcc---------cccCCCCCEEEEEcCCCCCccc-chHHHHHHHHHcC---C
Confidence 5799999999999999999998654321000 001134689999999999 566 6899999988754 3
Q ss_pred cEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHh----CCCCeEEEEEeCCh
Q 047110 681 VIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARR----HPGERIGVFYCGSL 756 (784)
Q Consensus 681 ~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~----~~~~~~~V~vCGP~ 756 (784)
..+++..+++.... .. . -+++.+.+..+. ...++..||+|||+
T Consensus 313 ~~~~~~a~SR~~~~--~k-~------------------------------yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~ 359 (406)
T cd06202 313 LTEVYTALSREPGK--PK-T------------------------------YVQDLLKEQAESVYDALVREGGHIYVCGDV 359 (406)
T ss_pred CceEEEEEcCCCCC--CC-e------------------------------ehhhHHHHhHHHHHHHHHhCCCEEEEeCCC
Confidence 44566667753110 00 0 011112111111 00123469999999
Q ss_pred hHHHHHHHHHHhcc
Q 047110 757 LLGKELEGLCTTFS 770 (784)
Q Consensus 757 ~m~~~v~~~~~~~~ 770 (784)
.|+++|++++.++.
T Consensus 360 ~M~~~V~~~L~~i~ 373 (406)
T cd06202 360 TMAEDVSQTIQRIL 373 (406)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999987643
No 87
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.58 E-value=1.2e-14 Score=167.61 Aligned_cols=188 Identities=15% Similarity=0.149 Sum_probs=123.9
Q ss_pred ceecCCcEEEEecCCCCCCcccccccccCCC--CCeEEEEEEec----------CCccHHHHHHHHHhhhccCCCCCEEE
Q 047110 520 FRYRAGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRAL----------GDWTYRLYGIFQEEMLGAAKGFPKVY 587 (784)
Q Consensus 520 ~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~~~~~v~ 587 (784)
.++.||||+.+..| .+.|+|||+|+|. ++.+.+.|+.. |..|..|. +..++|+++.
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~--------~~l~~Gd~v~ 437 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLA--------DRLEEEGEVR 437 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhh--------hcCCCCCEEE
Confidence 36789999988765 2689999999985 46677776442 33333333 2346899999
Q ss_pred EeCCCC-CCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHH
Q 047110 588 IDGPYG-ASSQDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFR 666 (784)
Q Consensus 588 i~GPyG-~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~ 666 (784)
|.||.| .|..+.....++||||+||||||+++++++..... ...+++|+|++|+...-..|+
T Consensus 438 v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-----------------~~~~~~LffG~R~~~~D~lY~ 500 (600)
T PRK10953 438 VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-----------------APGKNWLFFGNPHFTEDFLYQ 500 (600)
T ss_pred EEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-----------------CCCCeEEEeeccCCccchhHH
Confidence 999875 56654455679999999999999999999876543 246789999999954333899
Q ss_pred HHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCC
Q 047110 667 DVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGE 746 (784)
Q Consensus 667 ~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~ 746 (784)
++|+++.+.+ ...+++...++...+ . . +.|..- +-+-+++.+-+ . +
T Consensus 501 ~El~~~~~~g---~l~~l~~afSRd~~~--k--~---YVQ~~l-------------------~e~~~~l~~~l-~----~ 546 (600)
T PRK10953 501 VEWQRYVKEG---LLTRIDLAWSRDQKE--K--I---YVQDKL-------------------REQGAELWRWI-N----D 546 (600)
T ss_pred HHHHHHHHcC---CcceEEEEECCCCCC--C--C---cHHHHH-------------------HHHHHHHHHHH-H----C
Confidence 9999998764 122344555653110 0 0 111000 00011122211 1 1
Q ss_pred eEEEEEeCCh-hHHHHHHHHHHhcc
Q 047110 747 RIGVFYCGSL-LLGKELEGLCTTFS 770 (784)
Q Consensus 747 ~~~V~vCGP~-~m~~~v~~~~~~~~ 770 (784)
...||+|||. .|.++|++++.++.
T Consensus 547 ga~~YVCG~~~~M~~~V~~~L~~i~ 571 (600)
T PRK10953 547 GAHIYVCGDANRMAKDVEQALLEVI 571 (600)
T ss_pred CcEEEEECCCccchHHHHHHHHHHH
Confidence 2469999996 69999999987754
No 88
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=128.44 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=109.9
Q ss_pred cCChhHHHHHHHHHHHcccC-----CCCccccchhchHHHHHHhhhhhhhhccCccccCCCC--cHHHHHHHHHHHHccC
Q 047110 71 FTNLEWTDVEARFDRLAYTK-----NGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQ--TPEFANEILRALRGRS 143 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~-----dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~d~~ 143 (784)
.+..++-+++++|..+..+- .|+.+-|..--+..+- .+++ .+.+-+++.+ .|..|
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~-----------------kMPELkenpfk~ri~e-~FSeD 83 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIE-----------------KMPELKENPFKRRICE-VFSED 83 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHh-----------------hChhhhcChHHHHHHH-HhccC
Confidence 45677888999999998421 2222223322222222 2222 2246778888 48899
Q ss_pred CCCccccHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcC
Q 047110 144 EWKVDITKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLD 221 (784)
Q Consensus 144 ~d~g~I~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D 221 (784)
|+ |.++|++|+++.+.++ +..+-|+..||++||.|+|++|..++|..++..+... ++ ++++++-+|+++++++|
T Consensus 84 G~-GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~-eL--s~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 84 GR-GNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD-EL--SDEEVELICEKVIEEAD 159 (189)
T ss_pred CC-CcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc-cC--CHHHHHHHHHHHHHHhc
Confidence 95 9999999999999998 7788899999999999999999999999999775543 34 48889999999999999
Q ss_pred CCCCCcccccCCC
Q 047110 222 TKKRGYLEVTNPH 234 (784)
Q Consensus 222 ~d~dG~i~~~eF~ 234 (784)
.||||++++.||+
T Consensus 160 ~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 160 LDGDGKLSFAEFE 172 (189)
T ss_pred CCCCCcccHHHHH
Confidence 9999999999997
No 89
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.50 E-value=1.5e-13 Score=127.46 Aligned_cols=121 Identities=26% Similarity=0.368 Sum_probs=90.8
Q ss_pred hhhhhhHhHHHHHHhhhhh-hhhhcccccccccccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecchhhHHHH
Q 047110 298 AETLKLNMALILLPVSRNT-VTWLRKKRWLSSIIPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCDRVLFQQT 376 (784)
Q Consensus 298 ~~~~~~n~~ll~l~~~Rn~-l~~L~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~~~~~~~~ 376 (784)
|.+...|+++++++++||+ +.++++ +|+|+.+.+|||+|+++++++++|+++++.. ..... ....
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~-------~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~-~~~~~---~~~~--- 67 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTG-------ISFDRLLRFHRWLGRLAFFLALLHGVLYLIN-WLRFG---GWDW--- 67 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhch---
Confidence 4455678999999999986 767787 9999999999999999999999999998832 11000 0000
Q ss_pred hhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHHhhcHHHH-hhccCCCcccccccchhHHHHHHHHHHHHHHHH
Q 047110 377 LASGFGHQQPTYMQILATKEVATGIAMVILMAIAFPLATKWAR-RQSTLLPRSVRHVAGYNTFWYSHHLFVFVYALL 452 (784)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~~S~~~iR-r~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~v~~ 452 (784)
..............+|+++++++++++++|.+++| |+. ||.|+++|++++++++++
T Consensus 68 --------~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~------------ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 68 --------QEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRN------------YEIFYYLHILFYIAFLLA 124 (125)
T ss_pred --------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHHHHH
Confidence 00011112234467999999999999999999999 554 999999999998877653
No 90
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.44 E-value=6.4e-13 Score=119.93 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=73.2
Q ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEE
Q 047110 607 LIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHN 686 (784)
Q Consensus 607 lIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i 686 (784)
||||||||||++|+++++.... ..++++|+|++|+.+++ .|.++|+++.+.. ...+.+.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-----------------~~~~v~l~~~~r~~~~~-~~~~~l~~~~~~~--~~~~~~~- 59 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-----------------DNRKVTLFYGARTPEDL-LFRDELEALAQEY--PNRFHVV- 59 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-----------------CTSEEEEEEEESSGGGS-TTHHHHHHHHHHS--TTCEEEE-
T ss_pred CeecceeHHHHHHHHHHHHHhC-----------------CCCCEEEEEEEcccccc-cchhHHHHHHhhc--ccccccc-
Confidence 7999999999999999999873 45899999999999999 7999999998876 2234432
Q ss_pred EEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHH-HHHHH-hCCCCeEEEEEeCChhHHHHHHH
Q 047110 687 FLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVF-SKLAR-RHPGERIGVFYCGSLLLGKELEG 764 (784)
Q Consensus 687 ~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~-~~~~~-~~~~~~~~V~vCGP~~m~~~v~~ 764 (784)
.+....... ....|| +.+.+ ++... .....+..||+|||++|+++|++
T Consensus 60 -~~~~~~~~~---------------------------~~~~g~--v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 60 -YVSSPDDGW---------------------------DGFKGR--VTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp -EETTTTSST---------------------------TSEESS--HHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred -ccccccccc---------------------------CCceee--hhHHHHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 221111000 011122 23333 33333 22234568999999999999874
No 91
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.42 E-value=1.4e-12 Score=118.01 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=116.0
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.++.+++|+++.|..+|.|.|| .|++++++..+ .++|...+++++..|+++ . +|-|+
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG---~IdkeDL~d~~--------------aSlGk~~~d~elDaM~~E-----a-~gPIN 82 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDG---FIDKEDLRDML--------------ASLGKIASDEELDAMMKE-----A-PGPIN 82 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCC---cccHHHHHHHH--------------HHcCCCCCHHHHHHHHHh-----C-CCCee
Confidence 4577899999999999999999 99999999999 567888888899999985 3 47899
Q ss_pred HHHHHHHHHH-hc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 047110 151 KNELRDYWHR-MA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 151 f~ef~~~~~~-~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
|--|+.++-. +. .++++-+..||+.||.+|+|.|..+.|+++|...+. ...++.++.|++++-.|..|.+
T Consensus 83 ft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD--------r~~~eEV~~m~r~~p~d~~G~~ 154 (171)
T KOG0031|consen 83 FTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD--------RFTDEEVDEMYREAPIDKKGNF 154 (171)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc--------cCCHHHHHHHHHhCCcccCCce
Confidence 9999999864 55 788999999999999999999999999999976443 2336678889999999999999
Q ss_pred cccCCC
Q 047110 229 EVTNPH 234 (784)
Q Consensus 229 ~~~eF~ 234 (784)
+|.+|.
T Consensus 155 dy~~~~ 160 (171)
T KOG0031|consen 155 DYKAFT 160 (171)
T ss_pred eHHHHH
Confidence 999885
No 92
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.28 E-value=1.9e-11 Score=127.56 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCC-CcHHHHHHHHHHHHccCCCCccccHH
Q 047110 74 LEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ-QTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 74 ~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
+.-.+++.+|+.+|.++|| .++..++.+.+ ..++.+ +..+.+..+|.+ .|.|.| |.+||+
T Consensus 11 er~~r~~~lf~~lD~~~~g---~~d~~~l~k~~--------------~~l~~~~~~~~~~~~l~~~-~d~~~d-g~vDy~ 71 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDG---QVDLDQLEKGL--------------EKLDHPKPNYEAAKMLFSA-MDANRD-GRVDYS 71 (463)
T ss_pred HHHHHHHHHHHHhccCCCC---ceeHHHHHHHH--------------HhcCCCCCchHHHHHHHHh-cccCcC-CcccHH
Confidence 3446799999999999999 99999999888 333444 666788999995 999996 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccC
Q 047110 153 ELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTN 232 (784)
Q Consensus 153 ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~e 232 (784)
||..++. ..|.++..+|+..|.|.||.|+.+|+.+.++.++.. ++ ++.+.++|+.+|+|+++.|+++|
T Consensus 72 eF~~Y~~----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~--l~------de~~~k~~e~~d~~g~~~I~~~e 139 (463)
T KOG0036|consen 72 EFKRYLD----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ--LS------DEKAAKFFEHMDKDGKATIDLEE 139 (463)
T ss_pred HHHHHHH----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc--cC------HHHHHHHHHHhccCCCeeeccHH
Confidence 9999996 678899999999999999999999999999875543 33 45567799999999999999999
Q ss_pred CCCC
Q 047110 233 PHKD 236 (784)
Q Consensus 233 F~~~ 236 (784)
++.+
T Consensus 140 ~rd~ 143 (463)
T KOG0036|consen 140 WRDH 143 (463)
T ss_pred HHhh
Confidence 9854
No 93
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.28 E-value=2e-11 Score=108.88 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCC-CccccH
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEW-KVDITK 151 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d-~g~I~f 151 (784)
.....+++++|..+|.++|| +|+..+...++ |++|.+|++.++.+.... .+++.- ...|+|
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~---ki~~~q~gdvl--------------RalG~nPT~aeV~k~l~~-~~~~~~~~~rl~F 68 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDG---KISGSQVGDVL--------------RALGQNPTNAEVLKVLGQ-PKRREMNVKRLDF 68 (152)
T ss_pred cchHHHHHHHHHHHhccCcc---cccHHHHHHHH--------------HHhcCCCcHHHHHHHHcC-cccchhhhhhhhH
Confidence 34557899999999999999 99999999999 999999999998888875 555520 258999
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 047110 152 NELRDYWHRMA----GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGY 227 (784)
Q Consensus 152 ~ef~~~~~~~~----~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~ 227 (784)
|+|+-++..+. +.+.++.-+-.+.||++|+|.|...||+.++..++.. ++ +++++ .++.. -.|++|-
T Consensus 69 E~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek--l~--eeEVe----~Llag-~eD~nG~ 139 (152)
T KOG0030|consen 69 EEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK--LT--EEEVE----ELLAG-QEDSNGC 139 (152)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh--cc--HHHHH----HHHcc-ccccCCc
Confidence 99999998876 4456777778999999999999999999999765543 44 44444 44443 3477899
Q ss_pred ccccCCCC
Q 047110 228 LEVTNPHK 235 (784)
Q Consensus 228 i~~~eF~~ 235 (784)
|+|++|.+
T Consensus 140 i~YE~fVk 147 (152)
T KOG0030|consen 140 INYEAFVK 147 (152)
T ss_pred CcHHHHHH
Confidence 99999863
No 94
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.24 E-value=2.6e-11 Score=119.70 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=95.8
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCC----CceecCCcEEEEec--CCCCC--CcccccccccCCCCCeEEEEEEecCCcc
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPE----GFRYRAGMYMFVQC--PEISP--FEWHPFSLTSGPADDFLSVHIRALGDWT 565 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~--p~~~~--~~~HPFTIaS~p~~~~l~l~Ir~~g~~T 565 (784)
+.+.+|...+..++|+..+++.+.. .....|||||.+.- |+.+. ...+.+|..+....+.++|.||...+
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~-- 226 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG-- 226 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc--
Confidence 3566777788889999999986422 23578999999874 44332 12234555555556889999998766
Q ss_pred HHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCC---CCCCCeEEEEEcCCCHHHHHHHHHHHHHH
Q 047110 566 YRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQD---YVKYDVVLLIGLGIGATPFISIIRDVANN 627 (784)
Q Consensus 566 ~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~---~~~~~~vvlIagG~GItp~lsil~~l~~~ 627 (784)
+.++...++..+.|+.+.+..|-|.|... .....+++|+|||+||||.++|+...+..
T Consensus 227 ----G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 227 ----GVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC 287 (385)
T ss_pred ----hhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence 56777777778899999999999998642 34458999999999999999999876643
No 95
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.23 E-value=2.8e-11 Score=113.80 Aligned_cols=126 Identities=19% Similarity=0.171 Sum_probs=107.5
Q ss_pred ccCCCccccccccceeeeecc-cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc
Q 047110 50 RRYRDASGENLITSLEIIPLR-FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT 128 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (784)
..+++++|..+..+|..+.+. +....-.++.++|..+|. ++| .|++++|..+|+ ..++....
T Consensus 28 l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~---~idf~~Fl~~ms-------------~~~~~~~~ 90 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNE---TVDFPEFLTVMS-------------VKLKRGDK 90 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCC---ccCHHHHHHHHH-------------HHhccCCc
Confidence 677888998888888887755 334445678889999987 667 799999999993 34445566
Q ss_pred HHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 129 PEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 129 ~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
++++...|+ ++|.|+| |+|+.+|+..+++.++ ..++++++.+++.+|.|+||.|+.+||.+.+.
T Consensus 91 ~Eel~~aF~-~fD~d~d-G~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 91 EEELREAFK-LFDKDHD-GYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHHH-HhCCCCC-ceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 788999999 6999996 9999999999999999 88899999999999999999999999999884
No 96
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.21 E-value=2.9e-11 Score=107.15 Aligned_cols=91 Identities=24% Similarity=0.372 Sum_probs=74.4
Q ss_pred eEEEEEeEeeCCCEEEEEEecCC---CceecCCcEEEEecCCCCCCcccccccccCCCC-CeEEEEEEec--CCccHHHH
Q 047110 496 EIKNLTPSLYPGKVLSLKMQKPE---GFRYRAGMYMFVQCPEISPFEWHPFSLTSGPAD-DFLSVHIRAL--GDWTYRLY 569 (784)
Q Consensus 496 ~~~v~~~~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~~~~~~HPFTIaS~p~~-~~l~l~Ir~~--g~~T~~L~ 569 (784)
+++|++++.+++++..++|..|. .+.+.||||+.|+++..+...+||||++|.|.+ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36788999999999999998763 367999999999999444457899999999975 5899999999 55677664
Q ss_pred HHHHHhhhccCCCCCEEEEeCCCCCC
Q 047110 570 GIFQEEMLGAAKGFPKVYIDGPYGAS 595 (784)
Q Consensus 570 ~~~~~~~~~~~~~~~~v~i~GPyG~~ 595 (784)
+ .++|+.+.|.||+|.+
T Consensus 81 ~---------l~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 81 Q---------LKPGDEVEIRGPYGNF 97 (99)
T ss_dssp T---------SCTTSEEEEEEEESSE
T ss_pred h---------CCCCCEEEEEEccccc
Confidence 4 3689999999999986
No 97
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.4e-10 Score=128.99 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=117.0
Q ss_pred CcccccccccCCCC--CeEEEEEEec--CCccHHHHHHHHHhhhccCCCCCEEEEeCCCC-CCCCCCCCCCeEEEEEcCC
Q 047110 538 FEWHPFSLTSGPAD--DFLSVHIRAL--GDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYG-ASSQDYVKYDVVLLIGLGI 612 (784)
Q Consensus 538 ~~~HPFTIaS~p~~--~~l~l~Ir~~--g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~ 612 (784)
...|-|||+|+|.. +.+.++|..+ ..+.+.-.+.++..+.+....++.+.|...-+ .+..+.+...++||||.||
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GT 450 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGT 450 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCC
Confidence 36789999999873 5666666543 11111122334443333233577888877666 4554444458999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCC
Q 047110 613 GATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVY 692 (784)
Q Consensus 613 GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~ 692 (784)
||||+.++++....... ..++.|++++|+.++-..|++++++..+.+ ...++....++..
T Consensus 451 GIAPFRafvq~r~~~~~-----------------~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G---~~~~l~~AfSRdq 510 (587)
T COG0369 451 GIAPFRAFVQERAANGA-----------------EGKNWLFFGCRHFTEDFLYQEEWEEYLKDG---VLTRLDLAFSRDQ 510 (587)
T ss_pred CchhHHHHHHHHHhccc-----------------cCceEEEecCCCCccchhhHHHHHHHHhcC---CceeEEEEEeecC
Confidence 99999999998776552 237999999999666668999999876643 3566666777642
Q ss_pred CCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeC-ChhHHHHHHHHHHhccc
Q 047110 693 QEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCG-SLLLGKELEGLCTTFSY 771 (784)
Q Consensus 693 ~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCG-P~~m~~~v~~~~~~~~~ 771 (784)
.+ .. +.|..- |-+-+ .+.++.++ + ..+|||| +..|.++|.+++.+...
T Consensus 511 ~~----Ki---YVQd~l-------------------re~~d-el~~~l~~---g-a~~YVCGd~~~Ma~dV~~AL~~il~ 559 (587)
T COG0369 511 EE----KI---YVQDRL-------------------REQAD-ELWEWLEE---G-AHIYVCGDAKGMAKDVEEALLDILA 559 (587)
T ss_pred CC----Cc---cHHHHH-------------------HHhHH-HHHHHHHC---C-CEEEEeCCCccchHHHHHHHHHHHH
Confidence 11 00 111100 11111 22222222 2 4699999 88999999999987543
No 98
>PLN02964 phosphatidylserine decarboxylase
Probab=99.18 E-value=1.6e-10 Score=132.07 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=93.4
Q ss_pred ccccceeeeec-ccCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccC-CCCcHHH---HH
Q 047110 59 NLITSLEIIPL-RFTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVA-MQQTPEF---AN 133 (784)
Q Consensus 59 ~~~~~l~~~~~-~~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~ 133 (784)
+.+.++..+.. ..+..+.+++++.|+.+|.|+|| .| +..++ +.+| ..+++++ ++
T Consensus 124 n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG---~i----Lg~il--------------rslG~~~pte~e~~fi~ 182 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEPESACESFDLLDPSSSN---KV----VGSIF--------------VSCSIEDPVETERSFAR 182 (644)
T ss_pred HHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCC---cC----HHHHH--------------HHhCCCCCCHHHHHHHH
Confidence 33444444432 25667889999999999999999 76 67777 5557 4565554 89
Q ss_pred HHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 134 EILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 134 ~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
++|+. +|.|+| |.|+|+||+.+|..++ ..++++++.+|+.||.|+||+|+.+||+++++.
T Consensus 183 ~mf~~-~D~Dgd-G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 183 RILAI-VDYDED-GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHH-hCCCCC-CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99994 899996 9999999999999887 778889999999999999999999999999976
No 99
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=6.3e-11 Score=113.56 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=108.3
Q ss_pred CccCCCccccccccceeeeecccC-ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCC-
Q 047110 49 NRRYRDASGENLITSLEIIPLRFT-NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ- 126 (784)
Q Consensus 49 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~- 126 (784)
..++.++.|.++..+|..+.+..+ .....++..++++.|.|+|| .|+.+||..++.+... .....
T Consensus 15 ~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g---~I~~~eF~~l~~~~~~----------~~~~~~ 81 (151)
T KOG0027|consen 15 QLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDG---TIDFEEFLDLMEKLGE----------EKTDEE 81 (151)
T ss_pred HHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCC---eEcHHHHHHHHHhhhc----------cccccc
Confidence 367788888888888888887643 44667899999999999999 9999999999932211 00011
Q ss_pred CcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 127 QTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 127 ~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
...+++.+.|+ ++|.|+| |+|+.+|+..+|..++ ..+.+++..+++.+|.|+||.|+++|+.++|.
T Consensus 82 ~~~~el~eaF~-~fD~d~~-G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 82 ASSEELKEAFR-VFDKDGD-GFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccHHHHHHHHH-HHccCCC-CcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 23458999999 6999996 9999999999999999 77799999999999999999999999999984
No 100
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.14 E-value=4.1e-10 Score=133.04 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=95.8
Q ss_pred eeEEEEEeEeeCCCEEEEEEecCC-CceecCCcEEEEecCCCC--CC-cccccccccCCC-CCeEEEEEEecCCccHHHH
Q 047110 495 YEIKNLTPSLYPGKVLSLKMQKPE-GFRYRAGMYMFVQCPEIS--PF-EWHPFSLTSGPA-DDFLSVHIRALGDWTYRLY 569 (784)
Q Consensus 495 ~~~~v~~~~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~~--~~-~~HPFTIaS~p~-~~~l~l~Ir~~g~~T~~L~ 569 (784)
...+|++++.++++++++++..|. .-.++||||+.|+.++.+ .+ +..||||++.+. .+.++|+++..|..|+.|.
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHh
Confidence 356788899999999999998876 336889999999986432 22 557999998754 5789999999999998887
Q ss_pred HHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHHH
Q 047110 570 GIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVAN 626 (784)
Q Consensus 570 ~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~~ 626 (784)
++ ++|+.+.|.||+|.+.. ...++++++||||+|++| +.+.|.+
T Consensus 871 ~l---------~~Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 871 TL---------SENEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred cC---------CCCCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHH
Confidence 65 58999999999999764 334679999999999997 4455543
No 101
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.13 E-value=4.1e-10 Score=108.96 Aligned_cols=129 Identities=16% Similarity=0.253 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHH
Q 047110 76 WTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELR 155 (784)
Q Consensus 76 ~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~ 155 (784)
..++...|...|+|..| +|+.+|+..++ +..-...=+.+.++.|+. ++|.+. +|.|+|+||.
T Consensus 56 ~~~~~~~f~~vD~d~sg---~i~~~eLq~aL-------------sn~~~~~Fs~~TcrlmI~-mfd~~~-~G~i~f~EF~ 117 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSG---RILAKELQQAL-------------SNGTWSPFSIETCRLMIS-MFDRDN-SGTIGFKEFK 117 (221)
T ss_pred cHHHHHHHHhhCccccc---cccHHHHHHHh-------------hcCCCCCCCHHHHHHHHH-HhcCCC-CCccCHHHHH
Confidence 34689999999999999 99999999998 111122335568899999 799999 4999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 156 DYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 156 ~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
.++..+. .=+..|+-||+|+.|.|+..||++.+..++-. ++ .+..+.+++..|.-++|.|.|++|.+
T Consensus 118 ~Lw~~i~-----~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~--Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 118 ALWKYIN-----QWRNVFRTYDRDRSGTIDSSELRQALTQLGYR--LS------PQFYNLLVRKYDRFGGGRIDFDDFIQ 184 (221)
T ss_pred HHHHHHH-----HHHHHHHhcccCCCCcccHHHHHHHHHHcCcC--CC------HHHHHHHHHHhccccCCceeHHHHHH
Confidence 9997653 56779999999999999999999999876643 33 55677788889988899999999975
No 102
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.10 E-value=6.3e-10 Score=126.58 Aligned_cols=199 Identities=18% Similarity=0.190 Sum_probs=114.6
Q ss_pred CCcEEEEecCCCCCCcccccccccCCC--CCeEEEEEEecCCcc----HHHHHHHHHhhhccCCCCCEEEEeCCCCCCC-
Q 047110 524 AGMYMFVQCPEISPFEWHPFSLTSGPA--DDFLSVHIRALGDWT----YRLYGIFQEEMLGAAKGFPKVYIDGPYGASS- 596 (784)
Q Consensus 524 pGQ~v~l~~p~~~~~~~HPFTIaS~p~--~~~l~l~Ir~~g~~T----~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~- 596 (784)
|+.|+-=.+|. .+.|+|||+|+|. .+.+.+.+-....-+ ..-++.++.++. ...++..+-.-+|-+.+.
T Consensus 409 P~~~ll~~lp~---L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~-~l~~~~~~~~~~~~~~s~f 484 (645)
T KOG1158|consen 409 PLPHLLELLPR---LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLS-NLKPGEKVPNPVPVGKSMF 484 (645)
T ss_pred CHHHHHHhCcc---ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHH-hcCCccccCcceeecccce
Confidence 44443333444 4899999999885 455555443321100 011122222221 123444433223334332
Q ss_pred -CCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHh
Q 047110 597 -QDYVKYDVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKI 675 (784)
Q Consensus 597 -~~~~~~~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~ 675 (784)
++.+...++||||.|||||||++++++.....+++. ..... +.|+++||+.+....|++++++..+.
T Consensus 485 rlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~-----------~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~ 552 (645)
T KOG1158|consen 485 RLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGP-----------KFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA 552 (645)
T ss_pred ecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCc-----------cCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc
Confidence 233455799999999999999999999887765431 12334 89999999999998999999887544
Q ss_pred cCCCCcEEEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCC
Q 047110 676 YLKQPVIEMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGS 755 (784)
Q Consensus 676 ~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP 755 (784)
. ...++.+-+++... +... +.|... |-.-+++.+-+.+ ++..+|+||+
T Consensus 553 ~---~l~~l~~A~SReq~---~~k~---YVQd~l-------------------~e~~d~v~~~L~~----~~g~iYvCGd 600 (645)
T KOG1158|consen 553 G---ILTRLDVAFSREQT---PKKI---YVQDRL-------------------REYADEVWELLKK----EGGHIYVCGD 600 (645)
T ss_pred C---cchhheeeeeccCC---CCce---ehhhHH-------------------HHHHHHHHHHHhc----CCcEEEEecC
Confidence 3 34455566666421 1100 011100 0011112222222 2346999999
Q ss_pred hh-HHHHHHHHHHhcc
Q 047110 756 LL-LGKELEGLCTTFS 770 (784)
Q Consensus 756 ~~-m~~~v~~~~~~~~ 770 (784)
.. |.++|.+++.++.
T Consensus 601 ~~~Ma~dV~~~L~~i~ 616 (645)
T KOG1158|consen 601 AKGMAKDVQDALVRIL 616 (645)
T ss_pred CccchHHHHHHHHHHH
Confidence 98 9999999998754
No 103
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=3.1e-10 Score=103.91 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=111.4
Q ss_pred ccCCCccccccccceeeeecc-cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc
Q 047110 50 RRYRDASGENLITSLEIIPLR-FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT 128 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (784)
-++.++++.....+|....++ +.+..-.++.++....|+++.| .|+.++|...++ ..++...+
T Consensus 41 lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g---~i~fe~f~~~mt-------------~k~~e~dt 104 (172)
T KOG0028|consen 41 LFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSG---KITFEDFRRVMT-------------VKLGERDT 104 (172)
T ss_pred hhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCc---eechHHHHHHHH-------------HHHhccCc
Confidence 455678888888898766655 5566778899999999988889 999999999873 44577778
Q ss_pred HHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 129 PEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 129 ~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
.+++..+|+ ++|.|++ |.|++.+|..++..++ .-++++++++.+-+|.|+||-|..+||.++|+.
T Consensus 105 ~eEi~~afr-l~D~D~~-Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFR-LFDDDKT-GKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHH-cccccCC-CCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 899999999 6999995 9999999999999999 788999999999999999999999999999853
No 104
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.99 E-value=4.7e-10 Score=91.26 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=55.6
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
+++.+|+.||+|+||+|+.+||+.+++..+.. ..++.+++.++.+|+.+|.|+||.|+++||.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~ 63 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD----MSDEESDEMIDQIFREFDTDGDGRISFDEFL 63 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH----STHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence 58899999999999999999999999875533 2267788899999999999999999999985
No 105
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-09 Score=111.86 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc---HH-HHHHHHHHHHccCCCCccc
Q 047110 74 LEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT---PE-FANEILRALRGRSEWKVDI 149 (784)
Q Consensus 74 ~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~~d~~~d~g~I 149 (784)
..+.+=+++|+.-|.|+|| .++++||...+ -.+.. .+ .+..-+.. .|+|+| |.|
T Consensus 160 km~~rDe~rFk~AD~d~dg---~lt~EEF~aFL-----------------HPEe~p~M~~iVi~Etl~d-~Dkn~D-G~I 217 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDG---SLTLEEFTAFL-----------------HPEEHPHMKDIVIAETLED-IDKNGD-GKI 217 (325)
T ss_pred HHHHHHHHHHhhcccCCCC---cccHHHHHhcc-----------------ChhhcchHHHHHHHHHHhh-cccCCC-Cce
Confidence 3455578899999999999 99999999998 11111 11 23333342 799997 999
Q ss_pred cHHHHHHHHHHhc-C--CHH---HHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCC
Q 047110 150 TKNELRDYWHRMA-G--SVD---SRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTK 223 (784)
Q Consensus 150 ~f~ef~~~~~~~~-~--~~~---~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d 223 (784)
+++||+.-|.... . .++ .+-+..|..+|+|+||+++.+|++..+. ......++.+++.++.++|.|
T Consensus 218 ~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~--------P~~~d~A~~EA~hL~~eaD~d 289 (325)
T KOG4223|consen 218 SLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL--------PSEQDHAKAEARHLLHEADED 289 (325)
T ss_pred eHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC--------CCCccHHHHHHHHHhhhhccC
Confidence 9999999887554 1 121 2344678888999999999999998882 222456788899999999999
Q ss_pred CCCcccccCCC
Q 047110 224 KRGYLEVTNPH 234 (784)
Q Consensus 224 ~dG~i~~~eF~ 234 (784)
+||++|++|-.
T Consensus 290 kD~kLs~eEIl 300 (325)
T KOG4223|consen 290 KDGKLSKEEIL 300 (325)
T ss_pred ccccccHHHHh
Confidence 99999999875
No 106
>PTZ00183 centrin; Provisional
Probab=98.94 E-value=3e-09 Score=102.59 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=100.7
Q ss_pred ccCCCccccccccceeeeecc-cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc
Q 047110 50 RRYRDASGENLITSLEIIPLR-FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT 128 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (784)
..+++++|..+..++..+.+. +.......+..+|..+|.|++| .|+.+||..++. ........
T Consensus 25 ~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g---~i~~~eF~~~~~-------------~~~~~~~~ 88 (158)
T PTZ00183 25 LFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSG---KIDFEEFLDIMT-------------KKLGERDP 88 (158)
T ss_pred HhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC---cEeHHHHHHHHH-------------HHhcCCCc
Confidence 456677777777777655543 2223345789999999999999 999999999872 11122344
Q ss_pred HHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 129 PEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 129 ~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
++.++.+|+ .+|.+++ |.|+.+||...+..++ ...+++++.+|..+|.|++|.|+.+||..++.
T Consensus 89 ~~~l~~~F~-~~D~~~~-G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 89 REEILKAFR-LFDDDKT-GKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHH-HhCCCCC-CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 567899999 5999995 9999999999998877 67788899999999999999999999999985
No 107
>PTZ00184 calmodulin; Provisional
Probab=98.82 E-value=1.3e-08 Score=96.87 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=98.4
Q ss_pred ccCCCccccccccceeeeecc-cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc
Q 047110 50 RRYRDASGENLITSLEIIPLR-FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT 128 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (784)
..+++++|..+..++..+... +.....+++.++|+.+|.|++| .|+.+||..++. ..+.....
T Consensus 19 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g---~i~~~ef~~~l~-------------~~~~~~~~ 82 (149)
T PTZ00184 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG---TIDFPEFLTLMA-------------RKMKDTDS 82 (149)
T ss_pred HHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCC---cCcHHHHHHHHH-------------HhccCCcH
Confidence 345667777777777654432 1122345789999999999999 999999999881 11122234
Q ss_pred HHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 129 PEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 129 ~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
.+.+..+|+ .+|.+++ |.|+.+||..++..++ ...++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 83 ~~~~~~~F~-~~D~~~~-g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFK-VFDRDGN-GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHH-hhCCCCC-CeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 456889999 5999995 9999999999998877 66788899999999999999999999998873
No 108
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.75 E-value=1.7e-08 Score=108.19 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred cEEEEecCCCCCCcccccccccCCCCCeEEEEEEecCCcc--HHH-HHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCC
Q 047110 526 MYMFVQCPEISPFEWHPFSLTSGPADDFLSVHIRALGDWT--YRL-YGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKY 602 (784)
Q Consensus 526 Q~v~l~~p~~~~~~~HPFTIaS~p~~~~l~l~Ir~~g~~T--~~L-~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~ 602 (784)
+|+.=.+|.+ ..|.|||+|.|...+++++|..+.--| +.- .++++.+. ...++++.+.+.--=|+...+....
T Consensus 357 ~yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl-~sL~~g~~i~~~v~~g~l~~p~~~~ 432 (574)
T KOG1159|consen 357 DYLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWL-ASLKPGDEIPIKVRPGTLYFPSDLN 432 (574)
T ss_pred HHHHHhcccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHH-hhcCCCCeEEEEEecCccccCCCCC
Confidence 3444456766 789999999999888887775542211 000 12333332 2245777766655446655444446
Q ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcE
Q 047110 603 DVVLLIGLGIGATPFISIIRDVANNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVI 682 (784)
Q Consensus 603 ~~vvlIagG~GItp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l 682 (784)
.+++|||.|+||||+.+++++-.... .....|+++||+.+....|.++..+..+..
T Consensus 433 ~PlImVGPGTGvAPfRa~i~er~~q~------------------~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~------ 488 (574)
T KOG1159|consen 433 KPLIMVGPGTGVAPFRALIQERIYQG------------------DKENVLFFGCRNKDKDFLYEDEWTELNKRA------ 488 (574)
T ss_pred CCeEEEcCCCCcccHHHHHHHHHhhc------------------cCCceEEEecccCCccccccchhhhhhcch------
Confidence 79999999999999999999877533 123378889999987778887776665543
Q ss_pred EEEEEEecCCCCCCchhhHHHHHHHhhhhccCccccCCCCceeeecCCChHHHHHHHHHhCCCCeEEEEEeCCh-hHHHH
Q 047110 683 EMHNFLSSVYQEGDGRSAILSVIQALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARRHPGERIGVFYCGSL-LLGKE 761 (784)
Q Consensus 683 ~v~i~vT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~~~~~~~~V~vCGP~-~m~~~ 761 (784)
.+...++. .+... +.|.. =|-+-..+.+-+. ..+..||+||+. .|-++
T Consensus 489 -~~~AFSRD---qe~kv----YVQh~-------------------i~e~g~~v~~Ll~----~~gA~~fvaGsS~~MP~~ 537 (574)
T KOG1159|consen 489 -FHTAFSRD---QEQKV----YVQHK-------------------IRENGEEVWDLLD----NLGAYFFVAGSSGKMPKD 537 (574)
T ss_pred -hhhhcccc---cccce----eHHHH-------------------HHHhhHHHHHHHh----ccCCEEEEecCCCCCcHH
Confidence 22222331 11100 11110 0111111222222 123569999998 69999
Q ss_pred HHHHHHhcccC
Q 047110 762 LEGLCTTFSYR 772 (784)
Q Consensus 762 v~~~~~~~~~~ 772 (784)
|++++.++..+
T Consensus 538 V~~al~eI~~~ 548 (574)
T KOG1159|consen 538 VKEALIEIVGK 548 (574)
T ss_pred HHHHHHHHhhh
Confidence 99999886543
No 109
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.3e-08 Score=102.53 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHH
Q 047110 75 EWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNEL 154 (784)
Q Consensus 75 ~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef 154 (784)
...++.+++..+|.++|| .|+..|+..-+. .. ......+.+.+-+. ..|+|.| |.|+|+|+
T Consensus 75 ~~~rl~~l~~~iD~~~Dg---fv~~~El~~wi~-------------~s-~k~~v~~~~~~~~~-~~d~~~D-g~i~~eey 135 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDG---FVTESELKAWIM-------------QS-QKKYVVEEAARRWD-EYDKNKD-GFITWEEY 135 (325)
T ss_pred hHHHHHHHHhhhcCCCCC---ceeHHHHHHHHH-------------HH-HHHHHHHHHHHHHH-HhccCcc-ceeeHHHh
Confidence 456799999999999999 999999998761 00 11112223444455 2799997 99999999
Q ss_pred HHHHHHhc-----------CCHHH----HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHH
Q 047110 155 RDYWHRMA-----------GSVDS----RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEF 219 (784)
Q Consensus 155 ~~~~~~~~-----------~~~~~----~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (784)
...+.... ..... .=++.|+..|.||||.+|.+||...+- .+. ......-++...+++
T Consensus 136 ~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH---PEe----~p~M~~iVi~Etl~d 208 (325)
T KOG4223|consen 136 LPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH---PEE----HPHMKDIVIAETLED 208 (325)
T ss_pred hhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC---hhh----cchHHHHHHHHHHhh
Confidence 99877431 11111 335579999999999999999999982 111 122344568889999
Q ss_pred cCCCCCCcccccCCCCC
Q 047110 220 LDTKKRGYLEVTNPHKD 236 (784)
Q Consensus 220 ~D~d~dG~i~~~eF~~~ 236 (784)
.|+|+||+|+++||..+
T Consensus 209 ~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 209 IDKNGDGKISLEEFIGD 225 (325)
T ss_pred cccCCCCceeHHHHHhH
Confidence 99999999999999853
No 110
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.72 E-value=3.3e-08 Score=96.59 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRD 156 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~ 156 (784)
.-.+.+|+.+|.|+|| .|++.||..++ ..+--...++-+.-.|+ ++|.|+| |+|+.+|++.
T Consensus 64 ~y~~~vF~~fD~~~dg---~i~F~Efi~al--------------s~~~rGt~eekl~w~F~-lyD~dgd-G~It~~Eml~ 124 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDG---TIDFLEFICAL--------------SLTSRGTLEEKLKWAFR-LYDLDGD-GYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHhcccCCC---CcCHHHHHHHH--------------HHHcCCcHHHHhhhhhe-eecCCCC-ceEcHHHHHH
Confidence 4478899999999999 99999999887 11112223344566699 7999996 9999999999
Q ss_pred HHHHhc---CC---------HHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 157 YWHRMA---GS---------VDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 157 ~~~~~~---~~---------~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
++..+. +. .++.....|+.+|.|+||.||.+||.+..+.
T Consensus 125 iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 125 IVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 887543 32 5788999999999999999999999998853
No 111
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.72 E-value=1.2e-08 Score=87.54 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcc-CCCCcccHHHHHHHHhh-hhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 167 SRIQLFFYMCDR-NFDGKIDEIDMKQTILG-SASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 167 ~~l~~aF~~~D~-dgdG~Is~~El~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
..++.+|+.||+ |++|+|+.+||+.+|+. ++.. ++ + .+.++.||+.+|.|+||.|+|+||.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls--~---~~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--LK--D---VEGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--cc--C---HHHHHHHHHHhCCCCCCCCcHHHHH
Confidence 468899999999 99999999999999976 3321 22 1 0568999999999999999999996
No 112
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-07 Score=90.99 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=118.4
Q ss_pred ccCCCccccccccceeeeecc--cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCC
Q 047110 50 RRYRDASGENLITSLEIIPLR--FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQ 127 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (784)
.-|++.++.+.-+||+..+.. .+.=.++..+-+...+|.|.+| +|..+||+++-.
T Consensus 65 ~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G---~i~f~EF~~Lw~-------------------- 121 (221)
T KOG0037|consen 65 SVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSG---TIGFKEFKALWK-------------------- 121 (221)
T ss_pred hhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCC---ccCHHHHHHHHH--------------------
Confidence 667788888888888876542 2333456788889999999999 999999999871
Q ss_pred cHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCCh
Q 047110 128 TPEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTH 206 (784)
Q Consensus 128 ~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~ 206 (784)
.-..=+.+|+. +|+|+ +|.|+..|+...+..++ .-..+-.+.+++.||..++|.|++++|.+.+..
T Consensus 122 ~i~~Wr~vF~~-~D~D~-SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~----------- 188 (221)
T KOG0037|consen 122 YINQWRNVFRT-YDRDR-SGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV----------- 188 (221)
T ss_pred HHHHHHHHHHh-cccCC-CCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH-----------
Confidence 01235778984 99999 79999999999999999 888889999999999999999999999999843
Q ss_pred HHHHHHHHHHHHHcCCCCCCccc--ccCCC
Q 047110 207 EEAQEYAASIMEFLDTKKRGYLE--VTNPH 234 (784)
Q Consensus 207 ~~~~~~~~~~~~~~D~d~dG~i~--~~eF~ 234 (784)
.....+.|++.|++.+|.|+ |++|.
T Consensus 189 ---L~~lt~~Fr~~D~~q~G~i~~~y~dfl 215 (221)
T KOG0037|consen 189 ---LQRLTEAFRRRDTAQQGSITISYDDFL 215 (221)
T ss_pred ---HHHHHHHHHHhccccceeEEEeHHHHH
Confidence 12245689999999999865 67775
No 113
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.57 E-value=7.3e-08 Score=82.75 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHHHHHHhc-cCCCC-cccHHHHHHHHhh-----hhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 167 SRIQLFFYMCD-RNFDG-KIDEIDMKQTILG-----SASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 167 ~~l~~aF~~~D-~dgdG-~Is~~El~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
..++.+|+.|| +|||| +|+.+||+.+|+. .+.. . .++.++.+++++|.|+||.|+|+||.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~--~------~~~~v~~~i~~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI--K------EQEVVDKVMETLDSDGDGECDFQEFM 74 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC--C------CHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 46899999998 89999 5999999999976 2221 1 24558889999999999999999996
No 114
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.54 E-value=1e-07 Score=83.02 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHHHhc-cCCCC-cccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 167 SRIQLFFYMCD-RNFDG-KIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 167 ~~l~~aF~~~D-~dgdG-~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
..++.+|..|| +|||| .||.+||+.+++...... +. ....++.+++|++++|.|+||.|+|+||.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~-~~--~~~~~~~v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDF-LS--SQKDPMLVDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHh-cc--cccCHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 46888999998 89999 599999999996532211 11 11134568889999999999999999996
No 115
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.48 E-value=8e-07 Score=86.93 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=76.4
Q ss_pred HHHHHHHHcccCCCCccc-cchhchHHHHHHhhhhhhhhccCccccCCC-CcHHHHHHHHHHHHccCCCCccccHHHHHH
Q 047110 79 VEARFDRLAYTKNGTEPV-IKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ-QTPEFANEILRALRGRSEWKVDITKNELRD 156 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~-I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~ 156 (784)
..++++.++.+++| . |++++|...+ ...-.+ ..++-++-.|+ ++|.+++ |.|+.+|+..
T Consensus 68 ~~rI~~~f~~~~~~---~~v~F~~Fv~~l--------------s~f~~~~~~~~Kl~faF~-vYD~~~~-G~I~reel~~ 128 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNG---DPVDFEEFVRLL--------------SVFSPKASKREKLRFAFR-VYDLDGD-GFISREELKQ 128 (187)
T ss_pred HHHHHHHHhccCCC---CccCHHHHHHHH--------------hhhcCCccHHHHHHHHHH-HhcCCCC-CcCcHHHHHH
Confidence 56677777776777 5 9999999998 222222 23336777898 6999995 9999999999
Q ss_pred HHHHhc--CCH------HHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 157 YWHRMA--GSV------DSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 157 ~~~~~~--~~~------~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
++..+. ... ++.+...|..+|.|+||+||++|+..++..
T Consensus 129 iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 129 ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 998776 222 245777899999999999999999999954
No 116
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.48 E-value=3.6e-07 Score=74.14 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=51.4
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHHHHhc-C----CHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYWHRMA-G----SVDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~----~~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
++++|+ .+|.|++ |+|+.+||..++..+. . ..++.++.+|+.+|.|+||.|+.+||.++|
T Consensus 2 l~~~F~-~~D~d~~-G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFK-KFDKDGD-GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHH-HHSTTSS-SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHH-HHcCCcc-CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 578899 5999995 9999999999999877 2 234567777999999999999999999875
No 117
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.41 E-value=4.7e-07 Score=77.67 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHcc-cCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcH-HHHHHHHHHHHccCCCCccccHH
Q 047110 75 EWTDVEARFDRLAY-TKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTP-EFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 75 ~~~~l~~~F~~~d~-~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
.+..|.++|+.+|+ +++| .|+.+||+.++. ..+|...+. ++++.|++. .|.|+| |.|+|+
T Consensus 6 ai~~l~~~F~~fd~~~~~g---~i~~~ELk~ll~-------------~elg~~ls~~~~v~~mi~~-~D~d~D-G~I~F~ 67 (89)
T cd05022 6 AIETLVSNFHKASVKGGKE---SLTASEFQELLT-------------QQLPHLLKDVEGLEEKMKN-LDVNQD-SKLSFE 67 (89)
T ss_pred HHHHHHHHHHHHhCCCCCC---eECHHHHHHHHH-------------HHhhhhccCHHHHHHHHHH-hCCCCC-CCCcHH
Confidence 35567777777777 6777 777777777772 113433333 567777774 777775 777777
Q ss_pred HHHHHHHHhc
Q 047110 153 ELRDYWHRMA 162 (784)
Q Consensus 153 ef~~~~~~~~ 162 (784)
||+.+|..+.
T Consensus 68 EF~~l~~~l~ 77 (89)
T cd05022 68 EFWELIGELA 77 (89)
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 118
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.39 E-value=2.5e-07 Score=83.35 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 164 SVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 164 ~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
....+++++|..+|.|+||+||.+||..+. ... .+..++.+|+.+|.|+||.||++||+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---l~~---------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~ 104 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR---LDP---------NEHCIKPFFESCDLDKDGSISLDEWCY 104 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---ccc---------hHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence 346789999999999999999999999876 111 244567899999999999999999973
No 119
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.37 E-value=3.2e-06 Score=90.42 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHcc-cCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHH
Q 047110 75 EWTDVEARFDRLAY-TKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNE 153 (784)
Q Consensus 75 ~~~~l~~~F~~~d~-~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~e 153 (784)
+-++|+..|..+.. +.+| +..++.++|.... . -.++.+..++++.++.....|.-.| |.|||+|
T Consensus 31 ~~~eLr~if~~~as~e~~g-e~~mt~edFv~~y--l-----------gL~~e~~~n~~~v~Lla~iaD~tKD-glisf~e 95 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNG-ESYMTPEDFVRRY--L-----------GLYNESNFNDKIVRLLASIADQTKD-GLISFQE 95 (694)
T ss_pred ChHHHHHHHHHHhHHhhcc-ccccCHHHHHHHH--H-----------hhcccccCChHHHHHHHhhhhhccc-ccccHHH
Confidence 34456666666654 2334 3369999998754 0 2234444445667777767888886 9999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCC---------------------------h
Q 047110 154 LRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMT---------------------------H 206 (784)
Q Consensus 154 f~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~---------------------------~ 206 (784)
|...-+.+| .++..-+.+|++||+.++|.+|.++++.++....-.+++... +
T Consensus 96 F~afe~~lC-~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh 174 (694)
T KOG0751|consen 96 FRAFESVLC-APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLH 174 (694)
T ss_pred HHHHHhhcc-CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHH
Confidence 998877776 557788899999999999999999999999653322222221 4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 207 EEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 207 ~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
+..+|.+.+.|++-|..++|.|+--+|+
T Consensus 175 ~~~~E~~~qafr~~d~~~ng~is~Ldfq 202 (694)
T KOG0751|consen 175 EFQLEHAEQAFREKDKAKNGFISVLDFQ 202 (694)
T ss_pred HHHHHHHHHHHHHhcccCCCeeeeechH
Confidence 5566778899999999999999999997
No 120
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.36 E-value=4.5e-07 Score=78.95 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhc-cCCCC-cccHHHHHHHHhh-hhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 166 DSRIQLFFYMCD-RNFDG-KIDEIDMKQTILG-SASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 166 ~~~l~~aF~~~D-~dgdG-~Is~~El~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.+.++++|++|| +|||| .|+.+||+.+++. .+.. +. ....++.++++|+++|.|++|.|+|+||.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~--~~--~~~s~~~v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDF--LD--AQKDADAVDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHH--cc--CCCCHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence 467999999997 99999 5999999999964 3221 11 01134568889999999999999999996
No 121
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.36 E-value=1.3e-06 Score=92.14 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRD 156 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~ 156 (784)
.+|.+.|+.+|.++.| +|+...+..|++ +..|+..+=. .+-..+...+.| |.+.|.+..+
T Consensus 464 sdL~~eF~~~D~~ksG---~lsis~Wa~~mE-------------~i~~L~LPWr---~L~~kla~~s~d-~~v~Y~~~~~ 523 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSG---KLSISHWAKCME-------------NITGLNLPWR---LLRPKLANGSDD-GKVEYKSTLD 523 (631)
T ss_pred hHHHHHHHhcChhhcC---eeeHHHHHHHHH-------------HHhcCCCcHH---HhhhhccCCCcC-cceehHhHHH
Confidence 4588999999999999 999999999993 3445443311 111123334443 7888888776
Q ss_pred HHHHhc-------------CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCC
Q 047110 157 YWHRMA-------------GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTK 223 (784)
Q Consensus 157 ~~~~~~-------------~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d 223 (784)
.+..-. -.....++-+|...|+|+.|.||.+||+.+.+....-.+....+++..+.|+ .+|.|
T Consensus 524 ~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~----~mD~N 599 (631)
T KOG0377|consen 524 NLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELAR----SMDLN 599 (631)
T ss_pred HhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHH----hhccC
Confidence 553211 1123568889999999999999999999999765554444554555555554 48999
Q ss_pred CCCcccccCCC
Q 047110 224 KRGYLEVTNPH 234 (784)
Q Consensus 224 ~dG~i~~~eF~ 234 (784)
+||.|++.||.
T Consensus 600 kDG~IDlNEfL 610 (631)
T KOG0377|consen 600 KDGKIDLNEFL 610 (631)
T ss_pred CCCcccHHHHH
Confidence 99999999997
No 122
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.35 E-value=9.9e-07 Score=75.75 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHc-ccCCCCccc-cchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 74 LEWTDVEARFDRLA-YTKNGTEPV-IKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 74 ~~~~~l~~~F~~~d-~~~dG~~~~-I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
..+..+.++|+.+| .|+|| . |+.+||+.+|.. ++ ...+|...++++++++++. .|.|+| |.|+|
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG---~~I~~~eL~~ll~~-~~--------~~~lg~~~~~~~v~~~i~~-~D~n~d-G~v~f 70 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDK---HKLKKSELKELINN-EL--------SHFLEEIKEQEVVDKVMET-LDSDGD-GECDF 70 (88)
T ss_pred HHHHHHHHHHHHhcccCCCc---CEECHHHHHHHHHH-Hh--------HHHhcCCCCHHHHHHHHHH-hCCCCC-CcCcH
Confidence 44678999999998 68888 7 999999999921 00 0126777787889999995 899996 99999
Q ss_pred HHHHHHHHHhc
Q 047110 152 NELRDYWHRMA 162 (784)
Q Consensus 152 ~ef~~~~~~~~ 162 (784)
+||+.++..+.
T Consensus 71 ~eF~~li~~~~ 81 (88)
T cd05027 71 QEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHH
Confidence 99999887553
No 123
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.34 E-value=6e-07 Score=78.48 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcc-CC-CCcccHHHHHHHHhh-hhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 166 DSRIQLFFYMCDR-NF-DGKIDEIDMKQTILG-SASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 166 ~~~l~~aF~~~D~-dg-dG~Is~~El~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
...++.+|..||. || ||+|+.+||+.+++. .+...+.. ..++.++.+++++|.|+||.|+|+||.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~----~s~~ei~~~~~~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ----KDPMAVDKIMKDLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc----ccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4579999999997 97 699999999999975 22111111 234568889999999999999999997
No 124
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=98.33 E-value=5.6e-07 Score=76.15 Aligned_cols=89 Identities=38% Similarity=0.693 Sum_probs=65.0
Q ss_pred CCCccc-cccccceeeeecccCC-hhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcH
Q 047110 52 YRDASG-ENLITSLEIIPLRFTN-LEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTP 129 (784)
Q Consensus 52 ~~~~~~-~~~~~~l~~~~~~~~~-~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (784)
+|.+++ +..+++|++|.++.+. ..|.+++++|+++.. || .+.+++|.+|+ |+++++
T Consensus 3 dRt~S~A~~ALkGLrFIskt~~~~~~W~~VE~RFd~La~--dG---~L~rs~Fg~CI-----------------GM~dSk 60 (100)
T PF08414_consen 3 DRTKSGAQRALKGLRFISKTTGGADGWKEVEKRFDKLAK--DG---LLPRSDFGECI-----------------GMKDSK 60 (100)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-B--TT---BEEGGGHHHHH-----------------T--S-H
T ss_pred CcchhHHHHHHhcccceecCCCCccCHHHHHHHHHHhCc--CC---cccHHHHHHhc-----------------CCcccH
Confidence 344444 6789999999987444 479999999999995 99 99999999999 999999
Q ss_pred HHHHHHHHHHHccCCCC-ccccHHHHHHHHHHhc
Q 047110 130 EFANEILRALRGRSEWK-VDITKNELRDYWHRMA 162 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~-g~I~f~ef~~~~~~~~ 162 (784)
|++.++|+++..+.+-+ ..|+.+|+...+..+.
T Consensus 61 eFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 61 EFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 99999999876543322 4899999999988765
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=98.30 E-value=1.4e-06 Score=100.11 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHHhc--CCHHHH---HHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCC
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHRMA--GSVDSR---IQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSM 204 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~~~~~---l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~ 204 (784)
+++.+.|+ ++|.|+| |.| +...+..++ ..++++ ++.+|+.+|.|+||.|+.+||..+|..++..
T Consensus 143 ~elkeaF~-lfD~dgd-G~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~----- 211 (644)
T PLN02964 143 ESACESFD-LLDPSSS-NKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL----- 211 (644)
T ss_pred HHHHHHHH-HHCCCCC-CcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC-----
Confidence 46788899 6999996 987 444455554 233333 8999999999999999999999999753321
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 205 THEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
..++.+.++|+.+|.|+||.|+++||++
T Consensus 212 ---~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 212 ---VAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred ---CCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 1355688899999999999999999973
No 126
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.27 E-value=2.6e-06 Score=89.82 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=112.9
Q ss_pred ccCCCccccccccceeeeecc--cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCC
Q 047110 50 RRYRDASGENLITSLEIIPLR--FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQ 127 (784)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (784)
..|.++.|..++..+...... .....-+.....|...|.|.|| ++|.+||...+ . .
T Consensus 22 ~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg---~vDy~eF~~Y~-----------------~--~ 79 (463)
T KOG0036|consen 22 ELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDG---RVDYSEFKRYL-----------------D--N 79 (463)
T ss_pred HhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCC---cccHHHHHHHH-----------------H--H
Confidence 455567777776666533222 2234455688899999999999 99999999999 1 2
Q ss_pred cHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCCh
Q 047110 128 TPEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTH 206 (784)
Q Consensus 128 ~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~ 206 (784)
.+..+.++|+. .|.+.| |.|+.+|.-..++.++ .-.+++++.+|+..|+||++.|+.+|.+..+.... +
T Consensus 80 ~E~~l~~~F~~-iD~~hd-G~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p--------~ 149 (463)
T KOG0036|consen 80 KELELYRIFQS-IDLEHD-GKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP--------E 149 (463)
T ss_pred hHHHHHHHHhh-hccccC-CccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC--------h
Confidence 22357888986 899996 9999999999999999 77888999999999999999999999999985422 1
Q ss_pred HHHHHH---HHHHHHHcCCCCCCcccccCCCC
Q 047110 207 EEAQEY---AASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 207 ~~~~~~---~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
+..++. .+++ .-+|.+.|..|. |+|.+
T Consensus 150 s~i~di~~~W~h~-~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 150 SDLEDIYDFWRHV-LLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred hHHHHHHHhhhhh-eEEEccccccCC-cchHH
Confidence 222222 1221 136788888887 77754
No 127
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.27 E-value=8.9e-07 Score=71.92 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 170 QLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 170 ~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
+.+|+.+|.|+||.|+.+|++.++...+ . .++.+++++..+|.|++|.|+|+||.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~------~~~~~~~i~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----L------PRSVLAQIWDLADTDKDGKLDKEEFA 56 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----C------CHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 5789999999999999999999996532 1 24457889999999999999999996
No 128
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.27 E-value=9.4e-07 Score=58.55 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
+++.+|+.||+||||+||.+||..+|+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999999864
No 129
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.27 E-value=1.5e-06 Score=92.95 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=102.0
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHH---HccCCCCccccHHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRAL---RGRSEWKVDITKNELR 155 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~~d~g~I~f~ef~ 155 (784)
+.-.|-.+|+|.|| .|+.+++...- ....+.-+++++|+.+ +-...+ |.+||++|+
T Consensus 280 iy~kFweLD~Dhd~---lidk~~L~ry~-----------------d~tlt~~ivdRIFs~v~r~~~~~~e-GrmdykdFv 338 (493)
T KOG2562|consen 280 IYCKFWELDTDHDG---LIDKEDLKRYG-----------------DHTLTERIVDRIFSQVPRGFTVKVE-GRMDYKDFV 338 (493)
T ss_pred HHHHHhhhcccccc---ccCHHHHHHHh-----------------ccchhhHHHHHHHhhccccceeeec-CcccHHHHH
Confidence 45559999999999 99999999875 2233456899999831 223453 899999999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhcc-CCCCCChHHHHHHHHHHHHHcCCCCCCcccccCC
Q 047110 156 DYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASA-NKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNP 233 (784)
Q Consensus 156 ~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF 233 (784)
..+-.+. .++..-++.-|+..|.||||.++.+|++-........ .+.....-..++...+|+..+..-..|+|+++||
T Consensus 339 ~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDl 418 (493)
T KOG2562|consen 339 DFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDL 418 (493)
T ss_pred HHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHH
Confidence 9998887 7777889999999999999999999999888542211 0111111224666777888888777899999999
Q ss_pred CC
Q 047110 234 HK 235 (784)
Q Consensus 234 ~~ 235 (784)
+.
T Consensus 419 k~ 420 (493)
T KOG2562|consen 419 KG 420 (493)
T ss_pred hh
Confidence 83
No 130
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.24 E-value=3.8e-06 Score=73.14 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHc-ccCCCCccc-cchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 74 LEWTDVEARFDRLA-YTKNGTEPV-IKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 74 ~~~~~l~~~F~~~d-~~~dG~~~~-I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
.-+..+.++|..+| .|+|| . |+.+||+.++.++.. ..++...+++.++++++. +|.|+| |.|||
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg---~~Is~~EL~~ll~~~~~---------~~~~~~~~~~~v~~i~~e-lD~n~d-G~Idf 72 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDR---YKLSKGELKELLQRELT---------DFLSSQKDPMLVDKIMND-LDSNKD-NEVDF 72 (93)
T ss_pred HHHHHHHHHHHHHHccCCCC---CEECHHHHHHHHHHHhH---------HhcccccCHHHHHHHHHH-hCCCCC-CCCCH
Confidence 34677899999998 56776 5 999999999932100 112333466789999996 899996 99999
Q ss_pred HHHHHHHHHhc
Q 047110 152 NELRDYWHRMA 162 (784)
Q Consensus 152 ~ef~~~~~~~~ 162 (784)
+||+.++..+.
T Consensus 73 ~EF~~l~~~l~ 83 (93)
T cd05026 73 NEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
No 131
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.24 E-value=1.4e-06 Score=76.43 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 166 DSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 166 ~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.++++.+|+.||.|+||.|+.+|++++++..+ ++ ++.+++|+..+|.|++|.|+|+||.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~------~~ev~~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LP------QTLLAKIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CC------HHHHHHHHHHhcCCCCCCcCHHHHH
Confidence 35688888888888888888888888886521 22 3346678888888888888888887
No 132
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.20 E-value=4.2e-07 Score=92.43 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=92.1
Q ss_pred ccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc--CCHHHHHHHHH
Q 047110 96 VIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA--GSVDSRIQLFF 173 (784)
Q Consensus 96 ~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~~~~~l~~aF 173 (784)
.|-..||...+ ..+.+ +....+|. +||.+++ |.+||.|.+..++.++ ..+.+-++.+|
T Consensus 243 ~igi~efa~~l-----------------~vpvs-d~l~~~f~-LFde~~t-g~~D~re~v~~lavlc~p~~t~~iiq~af 302 (412)
T KOG4666|consen 243 DIGIVEFAVNL-----------------RVPVS-DKLAPTFM-LFDEGTT-GNGDYRETVKTLAVLCGPPVTPVIIQYAF 302 (412)
T ss_pred CcceeEeeeee-----------------ecchh-hhhhhhhh-eecCCCC-CcccHHHHhhhheeeeCCCCcHHHHHHHH
Confidence 67777777766 34444 45788999 7999995 9999999999999888 66788999999
Q ss_pred HHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 047110 174 YMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHKD 236 (784)
Q Consensus 174 ~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~ 236 (784)
++||.+.||.+..++|.-+++..+.-..+. +...|.+.|...||+|+|+||+++
T Consensus 303 k~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~f 356 (412)
T KOG4666|consen 303 KRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKF 356 (412)
T ss_pred HhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHH
Confidence 999999999999999999998655433333 345899999999999999999854
No 133
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.19 E-value=3.4e-06 Score=73.71 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHcc-cC-CCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 75 EWTDVEARFDRLAY-TK-NGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 75 ~~~~l~~~F~~~d~-~~-dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
...++.+.|+.+|. |+ || .|+.+|+..++..+- ...+|...+.++++.+++. +|.+++ |.|+|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG---~Is~~El~~~l~~~~---------g~~lg~~~s~~ei~~~~~~-~D~~~d-g~I~f~ 71 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKN---TLSRKELKKLMEKEL---------SEFLKNQKDPMAVDKIMKD-LDQNRD-GKVNFE 71 (94)
T ss_pred HHHHHHHHHHHHhccCCCCC---eECHHHHHHHHHHHh---------HHHhhccccHHHHHHHHHH-hCCCCC-CcCcHH
Confidence 35679999999997 87 69 999999999982100 0013556677889999995 899995 999999
Q ss_pred HHHHHHHHhc
Q 047110 153 ELRDYWHRMA 162 (784)
Q Consensus 153 ef~~~~~~~~ 162 (784)
||+.++..+.
T Consensus 72 eF~~l~~~~~ 81 (94)
T cd05031 72 EFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHH
Confidence 9999887665
No 134
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.18 E-value=4.4e-06 Score=73.31 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 72 TNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 72 ~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
++++..++++.|+.+|.|++| .|+.+|+..++ +..| .+++++++++. .+|.+++ |.|+|
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G---~Is~~el~~~l--------------~~~~--~~~~ev~~i~~-~~d~~~~-g~I~~ 63 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDG---TVTGAQAKPIL--------------LKSG--LPQTLLAKIWN-LADIDND-GELDK 63 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCC---eEeHHHHHHHH--------------HHcC--CCHHHHHHHHH-HhcCCCC-CCcCH
Confidence 345677888888888888888 88888888888 3334 34566788888 4788874 88888
Q ss_pred HHHHHHHHHh
Q 047110 152 NELRDYWHRM 161 (784)
Q Consensus 152 ~ef~~~~~~~ 161 (784)
+||+.++..+
T Consensus 64 ~eF~~~~~~~ 73 (96)
T smart00027 64 DEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 135
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.18 E-value=2.6e-06 Score=73.34 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=49.7
Q ss_pred HHHHHHHHH-hccCCCC-cccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 167 SRIQLFFYM-CDRNFDG-KIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 167 ~~l~~aF~~-~D~dgdG-~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
+.+..+|+. +|+|||| .||.+||+.++....... +. ....+..++++++++|.|+||.|+|+||.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~--~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TK--NQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hc--CCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 468889999 7899987 999999999996532110 00 01124567889999999999999999996
No 136
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.16 E-value=4.1e-06 Score=64.94 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=45.7
Q ss_pred CccccHHHHHHHHHHhc-C-CHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 146 KVDITKNELRDYWHRMA-G-SVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 146 ~g~I~f~ef~~~~~~~~-~-~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
+|.|+.+||..+++.++ . ..+++++.+|..+|.|+||+|+.+||..+++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 38999999999997777 6 78888999999999999999999999999853
No 137
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.15 E-value=2e-06 Score=74.23 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcc--CCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 166 DSRIQLFFYMCDR--NFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 166 ~~~l~~aF~~~D~--dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.++++.+|..||+ |+||.|+.+||+.+++..... ..+ ....++.++.|+..+|.|++|.|+|+||.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 4578999999999 899999999999999652211 011 11235568889999999999999999996
No 138
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.13 E-value=6.6e-06 Score=70.66 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHcc-cC-CCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 74 LEWTDVEARFDRLAY-TK-NGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 74 ~~~~~l~~~F~~~d~-~~-dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
..+..+-+.|.++|. |+ +| .|+.+||..++.++ ..+|.+.++++++++++. .|.|+| |.|+|
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g---~Is~~EL~~~l~~~-----------~~lg~k~t~~ev~~m~~~-~D~d~d-G~Idf 70 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKN---TLSKKELKELIQKE-----------LTIGSKLQDAEIAKLMED-LDRNKD-QEVNF 70 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCC---EECHHHHHHHHHHH-----------HhcCCCCCHHHHHHHHHH-hcCCCC-CCCcH
Confidence 345678889999997 66 78 89999999999321 124777888899999995 899996 99999
Q ss_pred HHHHHHHHHhc
Q 047110 152 NELRDYWHRMA 162 (784)
Q Consensus 152 ~ef~~~~~~~~ 162 (784)
+||+.++..+.
T Consensus 71 ~EFv~lm~~l~ 81 (88)
T cd05029 71 QEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 139
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.13 E-value=6.7e-06 Score=71.55 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHc-ccCCCCccc-cchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 75 EWTDVEARFDRLA-YTKNGTEPV-IKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 75 ~~~~l~~~F~~~d-~~~dG~~~~-I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
-.+++.+.|+.+| .|++| . |+.+||+.++.+. + ...++..+++++++++++. +|.|++ |.|+|+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G---~~Is~~El~~~l~~~-l--------g~~~~~~~s~~~v~~i~~~-~D~d~~-G~I~f~ 72 (92)
T cd05025 7 AMETLINVFHAHSGKEGDK---YKLSKKELKDLLQTE-L--------SDFLDAQKDADAVDKIMKE-LDENGD-GEVDFQ 72 (92)
T ss_pred HHHHHHHHHHHHhcccCCC---CeECHHHHHHHHHHH-H--------HHHccCCCCHHHHHHHHHH-HCCCCC-CcCcHH
Confidence 3567999999997 88888 8 9999999999210 0 0112334577789999994 899995 999999
Q ss_pred HHHHHHHHhc
Q 047110 153 ELRDYWHRMA 162 (784)
Q Consensus 153 ef~~~~~~~~ 162 (784)
||+.++..+.
T Consensus 73 eF~~l~~~~~ 82 (92)
T cd05025 73 EFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 140
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.10 E-value=5.3e-05 Score=75.76 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=83.7
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecchhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHH
Q 047110 330 IPFNDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCDRVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAI 409 (784)
Q Consensus 330 ~~~d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i 409 (784)
.+.++++.+||++|..+++++++|.+.+..... ...+....... ......+.|.+++++++.
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~-------~~~~~~~~~~i-----------~~~~~i~~G~ia~~lLl~ 129 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL-------GLDWSLLGKEI-----------VKRPYITVGMAAFLILLP 129 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cccHHHHHHHH-----------HhchHHHHHHHHHHHHHH
Confidence 455789999999999999999999987763111 00111111110 111224568889989999
Q ss_pred HHHhhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcccceeeeeeheeeeehhhhhhh
Q 047110 410 AFPLATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVYALLFVHGMFLFLTNNPFEKTTWMYIAVPVLLYAGERIYRV 489 (784)
Q Consensus 410 ~~~~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~~r~~r~ 489 (784)
+.++|..+.|||. +| .|..+|.+.++.+++.++|..+.. ... .....+|.++ ++++...|+.+.
T Consensus 130 LaiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~--~~~~~~y~~~-~~~ll~~R~~~~ 193 (205)
T PRK05419 130 LALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSD--SPEPLIYAAI-VAVLLALRLKKL 193 (205)
T ss_pred HHHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-ccc--cccHHHHHHH-HHHHHHHHHHHH
Confidence 9999999998875 38 899999999999888899966432 111 1233455543 344555566665
Q ss_pred e
Q 047110 490 V 490 (784)
Q Consensus 490 ~ 490 (784)
.
T Consensus 194 ~ 194 (205)
T PRK05419 194 R 194 (205)
T ss_pred H
Confidence 4
No 141
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.07 E-value=9.6e-06 Score=65.75 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=43.2
Q ss_pred HHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHHH
Q 047110 80 EARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYWH 159 (784)
Q Consensus 80 ~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~ 159 (784)
++.|+.+|.|++| .|+.+|+..++ +..|. +++.++++++ .+|.+++ |.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G---~i~~~el~~~l--------------~~~g~--~~~~~~~i~~-~~d~~~~-g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDG---LISGDEARPFL--------------GKSGL--PRSVLAQIWD-LADTDKD-GKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCC---cCcHHHHHHHH--------------HHcCC--CHHHHHHHHH-HhcCCCC-CcCCHHHHHHHHH
Confidence 4567777877778 78888888877 23343 4556777887 4777774 8888888887776
Q ss_pred Hh
Q 047110 160 RM 161 (784)
Q Consensus 160 ~~ 161 (784)
.+
T Consensus 61 ~~ 62 (67)
T cd00052 61 LI 62 (67)
T ss_pred HH
Confidence 43
No 142
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.03 E-value=1.1e-05 Score=69.59 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHHcc--cCCCCccccchhchHHHHHHhhhhhhhhccCccccC----CCCcHHHHHHHHHHHHccCCCC
Q 047110 73 NLEWTDVEARFDRLAY--TKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVA----MQQTPEFANEILRALRGRSEWK 146 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~--~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~d~~~d~ 146 (784)
+.++++++++|..+|. |++| .|+.+||..++. ..+| ...+.+++.++++. +|.+++
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G---~Is~~el~~~l~-------------~~~g~~~~~~~~~~ei~~i~~~-~d~~~~- 65 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKD---TLSKKELKELLE-------------TELPNFLKNQKDPEAVDKIMKD-LDVNKD- 65 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCC---cCcHHHHHHHHH-------------HHhhhhccCCCCHHHHHHHHHH-hccCCC-
Confidence 3567889999999999 8999 999999999982 1123 23456789999994 899995
Q ss_pred ccccHHHHHHHHHHh
Q 047110 147 VDITKNELRDYWHRM 161 (784)
Q Consensus 147 g~I~f~ef~~~~~~~ 161 (784)
|.|+|+||+.++...
T Consensus 66 g~I~f~eF~~~~~~~ 80 (88)
T cd00213 66 GKVDFQEFLVLIGKL 80 (88)
T ss_pred CcCcHHHHHHHHHHH
Confidence 999999999988754
No 143
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.03 E-value=2.9e-06 Score=80.75 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 047110 148 DITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGY 227 (784)
Q Consensus 148 ~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~ 227 (784)
+-.|.||.. ..-+.+..+|+.||.|.||+|+..||+.||..++.. ++---.+.||.++|.|.||+
T Consensus 87 yteF~eFsr-------kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap--------QTHL~lK~mikeVded~dgk 151 (244)
T KOG0041|consen 87 YTEFSEFSR-------KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP--------QTHLGLKNMIKEVDEDFDGK 151 (244)
T ss_pred hhhhhHHHH-------HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc--------hhhHHHHHHHHHhhcccccc
Confidence 445666653 223457778999999999999999999999654422 22333678999999999999
Q ss_pred ccccCCC
Q 047110 228 LEVTNPH 234 (784)
Q Consensus 228 i~~~eF~ 234 (784)
|+|-||.
T Consensus 152 lSfrefl 158 (244)
T KOG0041|consen 152 LSFREFL 158 (244)
T ss_pred hhHHHHH
Confidence 9998885
No 144
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.99 E-value=2.1e-05 Score=83.75 Aligned_cols=137 Identities=17% Similarity=0.258 Sum_probs=95.1
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCC----------CcHHHHHHHHHHHHccCCCCcc
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ----------QTPEFANEILRALRGRSEWKVD 148 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~d~~~d~g~ 148 (784)
.+-.|+.+|.|+|| .|+.+||..... + ......+|.. ...+....+..-||.+++ ++.
T Consensus 235 F~IAFKMFD~dgnG---~IdkeEF~~v~~---l-----i~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg-~~k 302 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNG---EIDKEEFETVQQ---L-----IRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRG-NGK 302 (489)
T ss_pred ceeeeeeeecCCCC---cccHHHHHHHHH---H-----HHhccccceecccCccccceehhhhhhhHHHHhhccCC-Ccc
Confidence 45568999999999 999999998651 1 1111222221 111222333444799999 499
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 047110 149 ITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 149 I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
++++||++.+..+ .+|-++.=|..||+..+|.|+..+|.+++-.....+ .+.-+.+.++.-++++.+ +-.|
T Consensus 303 Ls~deF~~F~e~L---q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n-----~~~k~~~lkrvk~kf~~~-~~gI 373 (489)
T KOG2643|consen 303 LSIDEFLKFQENL---QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVN-----SKKKHKYLKRVKEKFKDD-GKGI 373 (489)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccc-----hHhHHHHHHHHHHhccCC-CCCc
Confidence 9999999999865 466677789999999999999999999996533322 222344566777778777 5559
Q ss_pred cccCCCCC
Q 047110 229 EVTNPHKD 236 (784)
Q Consensus 229 ~~~eF~~~ 236 (784)
|++||+++
T Consensus 374 Sl~Ef~~F 381 (489)
T KOG2643|consen 374 SLQEFKAF 381 (489)
T ss_pred CHHHHHHH
Confidence 99999743
No 145
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.97 E-value=2.5e-05 Score=61.52 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=53.7
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
+..+|+ .+|.+++ |.|+++||...+..++ ...++.++.+|+.+|.|++|.|+.+||..++
T Consensus 2 ~~~~f~-~~d~~~~-g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFR-LFDKDGD-GTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHH-HhCCCCC-CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 467788 5899995 9999999999999888 7788899999999999999999999998765
No 146
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.95 E-value=4.4e-05 Score=65.58 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcc-CCCCccccHHHHHHHHHH---hc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhh
Q 047110 131 FANEILRALRGR-SEWKVDITKNELRDYWHR---MA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSA 197 (784)
Q Consensus 131 ~~~~l~~~~~d~-~~d~g~I~f~ef~~~~~~---~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~ 197 (784)
.+-.+|+. +|. ++++|+|+.+||..++.. ++ ..+++++..+|+..|.|+||.|+.+||..++..+.
T Consensus 11 ~~i~~F~~-y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHK-YSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHH-HHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 46778885 665 664489999999999974 35 56788999999999999999999999999986543
No 147
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.95 E-value=4.7e-05 Score=65.50 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhh
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHRMA------GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGS 196 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~------~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~ 196 (784)
..+..+|+.++|++|+++.|+.+||..++.... ...++.+..+++.+|.|+||.|+.+||.+++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346778886688888534999999999998642 3345789999999999999999999999998553
No 148
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.93 E-value=1.9e-05 Score=61.13 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCCccccchhchHHHHHHhhhhhhhhccCccccCCC-CcHHHHHHHHHHHHccCCCCccccHHHHHHHHHH
Q 047110 90 KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ-QTPEFANEILRALRGRSEWKVDITKNELRDYWHR 160 (784)
Q Consensus 90 ~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~ 160 (784)
++| .|+.+||..++ ..+|.+ .+++++..+|+ .+|.|++ |.|+|+||+.++..
T Consensus 1 ~~G---~i~~~~~~~~l--------------~~~g~~~~s~~e~~~l~~-~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDG---KITREEFRRAL--------------SKLGIKDLSEEEVDRLFR-EFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SSS---EEEHHHHHHHH--------------HHTTSSSSCHHHHHHHHH-HHTTSSS-SSEEHHHHHHHHHH
T ss_pred CcC---EECHHHHHHHH--------------HHhCCCCCCHHHHHHHHH-hcccCCC-CCCCHHHHHHHHHh
Confidence 368 89999999999 555877 88889999999 5999995 99999999998864
No 149
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.88 E-value=1.5e-05 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
+++.+|+.||.|+||+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999997
No 150
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.78 E-value=5.2e-05 Score=74.36 Aligned_cols=137 Identities=11% Similarity=-0.019 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHH
Q 047110 76 WTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELR 155 (784)
Q Consensus 76 ~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~ 155 (784)
.+.+..+|.+.|-|.|| +|+..|++.-+.|..- -.+....++-+-.|++ .|.|+| |.|+++||.
T Consensus 100 rrklmviFsKvDVNtDr---kisAkEmqrwImekta-----------EHfqeameeSkthFra-VDpdgD-GhvsWdEyk 163 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDR---KISAKEMQRWIMEKTA-----------EHFQEAMEESKTHFRA-VDPDGD-GHVSWDEYK 163 (362)
T ss_pred HHHHHHHHhhcccCccc---cccHHHHHHHHHHHHH-----------HHHHHHHhhhhhheee-eCCCCC-Cceehhhhh
Confidence 35588999999999999 9999999986521111 0122333445667884 899997 999999997
Q ss_pred HHHHHhc-CCH--------------HHHHHHHHHHhccCCCCcccH---------HHHHHHHhhhhccCCCCCChHHHHH
Q 047110 156 DYWHRMA-GSV--------------DSRIQLFFYMCDRNFDGKIDE---------IDMKQTILGSASANKLSMTHEEAQE 211 (784)
Q Consensus 156 ~~~~~~~-~~~--------------~~~l~~aF~~~D~dgdG~Is~---------~El~~~l~~~~~~~~~~~~~~~~~~ 211 (784)
--..... .+. -++=...|..-|+|.+|..+. +|+...+-- +-+...+..
T Consensus 164 vkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHP-------EhSrgmLrf 236 (362)
T KOG4251|consen 164 VKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHP-------EHSRGMLRF 236 (362)
T ss_pred hHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcCh-------HhhhhhHHH
Confidence 6544332 111 122344577778888887776 777766621 111334677
Q ss_pred HHHHHHHHcCCCCCCcccccCCCC
Q 047110 212 YAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 212 ~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
+++.++...|+|+|..++..||.+
T Consensus 237 mVkeivrdlDqdgDkqlSvpeFis 260 (362)
T KOG4251|consen 237 MVKEIVRDLDQDGDKQLSVPEFIS 260 (362)
T ss_pred HHHHHHHHhccCCCeeecchhhhc
Confidence 888999999999999999999985
No 151
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.78 E-value=4.4e-05 Score=60.09 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYW 158 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~ 158 (784)
+.++|+.+|.|++| .|+.+|+..++ +.++.+.+.+.+..+|+ .+|.+++ |.|+++||...+
T Consensus 2 ~~~~f~~~d~~~~g---~l~~~e~~~~l--------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDG---TISADELKAAL--------------KSLGEGLSEEEIDEMIR-EVDKDGD-GKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCC---cCcHHHHHHHH--------------HHhCCCCCHHHHHHHHH-HhCCCCC-CeEeHHHHHHHh
Confidence 67789999999999 99999999999 45577778888999999 5899885 999999998765
No 152
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.77 E-value=0.00011 Score=63.36 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHH-hc-CCH----HHHHHHHHHHhccCCCCcccHHHHHHHHhhhh
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHR-MA-GSV----DSRIQLFFYMCDRNFDGKIDEIDMKQTILGSA 197 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~-~~-~~~----~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~ 197 (784)
..+-.+|+.+..++|++|.|+.+||..++.. ++ ..+ ++++..+|+.+|.|+||.|+++||..++...+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3466778864545544689999999999974 43 333 78899999999999999999999999996543
No 153
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.71 E-value=3.5e-05 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHH
Q 047110 169 IQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 169 l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
|+.+|+.+|.|+||.||.+|+++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999999864
No 154
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.71 E-value=9.1e-05 Score=66.88 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 128 TPEFANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 128 ~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
.+..+.-+|. .+|.|+| |.|+.+|+..+. + ...+..++.+|+.+|.|+||.||.+|+...+
T Consensus 46 ~~~~l~w~F~-~lD~d~D-G~Ls~~EL~~~~--l-~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFN-QLDGNYD-GKLSHHELAPIR--L-DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHH-HHCCCCC-CcCCHHHHHHHH--c-cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3346777777 4788885 888888887776 2 2345667778888888888888888888877
No 155
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.65 E-value=0.00048 Score=67.78 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=85.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhccccceeeecchhhHHHHhhhccCCCCCceeeeccchhhHHHHHHHHHHHHHHH
Q 047110 333 NDNINFHKLIACGIVVGVILHGGTHLACDFPRIAGCDRVLFQQTLASGFGHQQPTYMQILATKEVATGIAMVILMAIAFP 412 (784)
Q Consensus 333 d~~~~~Hr~~g~~~~~~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~lv~l~i~~~ 412 (784)
...+.+.|.+|.++++++++|...|++.+. ++ + ++... .+.........|++++++|..+.+
T Consensus 71 ~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~-~-~~~~~-------~d~~~rpyitiG~iaflll~pLal 132 (209)
T COG2717 71 PKLIRIRRALGLWAFFYALLHFTAYLVLDL---------GL-D-LALLG-------LDLLKRPYITIGMIAFLLLIPLAL 132 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hc-c-HHHhh-------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999999863211 11 0 01101 011122335679999999999999
Q ss_pred hhcHHHHhhccCCCcccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcccceeeeeeheeeeehhhhhhhe
Q 047110 413 LATKWARRQSTLLPRSVRHVAGYNTFWYSHHLFVFVYALLFVHGMFLFLTNNPFEKTTWMYIAVPVLLYAGERIYRVV 490 (784)
Q Consensus 413 ~S~~~iRr~~~~~~~~~~~~~~Ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~~r~~r~~ 490 (784)
+|.+++|||. + ..|...|.+..+++++..+|..+..-. ..+..++|.++ .+.+.+.|+.+..
T Consensus 133 TS~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~K~---~~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 133 TSFKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSVKI---DMPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HhhHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhcCc---cchHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999987 4 789999999999999999998762211 12344566543 4566666766654
No 156
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.61 E-value=0.0001 Score=80.85 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=51.4
Q ss_pred ccHHHHHHH-HHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCC
Q 047110 149 ITKNELRDY-WHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKR 225 (784)
Q Consensus 149 I~f~ef~~~-~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~d 225 (784)
...++++.- +..+. ...++.++.+|++||.||||.|+.+||.. ++.+|..+|.|+|
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~D 371 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHD 371 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCC
Confidence 345555542 22222 45678999999999999999999999832 3569999999999
Q ss_pred CcccccCCCC
Q 047110 226 GYLEVTNPHK 235 (784)
Q Consensus 226 G~i~~~eF~~ 235 (784)
|.|+++||++
T Consensus 372 G~Is~eEf~~ 381 (391)
T PRK12309 372 GKITPEEMRA 381 (391)
T ss_pred CCCcHHHHHH
Confidence 9999999974
No 157
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.61 E-value=3.8e-05 Score=81.82 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=63.7
Q ss_pred ccCCCCccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCC--------ChHHHHHH
Q 047110 141 GRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSM--------THEEAQEY 212 (784)
Q Consensus 141 d~~~d~g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~--------~~~~~~~~ 212 (784)
+.+. +|.|+|.||+=++..+. .++...+.||+|||.||||-|+.+||..+++....+..+.. .....-+.
T Consensus 209 ~lg~-~GLIsfSdYiFLlTlLS-~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 209 KLGE-SGLISFSDYIFLLTLLS-IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EcCC-CCeeeHHHHHHHHHHHc-cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 3345 49999999998888776 34456888999999999999999999999864333222221 01111111
Q ss_pred HHH-HHHHcCCCCCCcccccCCCC
Q 047110 213 AAS-IMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 213 ~~~-~~~~~D~d~dG~i~~~eF~~ 235 (784)
... ...-+..|++|+++++||.+
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHH
Confidence 111 22237789999999999985
No 158
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.57 E-value=0.00012 Score=62.93 Aligned_cols=71 Identities=6% Similarity=0.021 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHccc--CCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCc----HHHHHHHHHHHHccCCCCc
Q 047110 74 LEWTDVEARFDRLAYT--KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQT----PEFANEILRALRGRSEWKV 147 (784)
Q Consensus 74 ~~~~~l~~~F~~~d~~--~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~d~~~d~g 147 (784)
..+..+-+.|.+++.. ++| .|+.+||..++. ..+|...+ +++++.+|+. +|.++| |
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~---~Is~~El~~ll~-------------~~~g~~~t~~~~~~~v~~i~~~-~D~d~d-G 66 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPD---TLYKKEFKQLVE-------------KELPNFLKKEKNQKAIDKIFED-LDTNQD-G 66 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcc---cCCHHHHHHHHH-------------HHhhHhhccCCCHHHHHHHHHH-cCCCCC-C
Confidence 3467789999999864 367 899999999992 12233233 6789999995 899996 9
Q ss_pred cccHHHHHHHHHHhc
Q 047110 148 DITKNELRDYWHRMA 162 (784)
Q Consensus 148 ~I~f~ef~~~~~~~~ 162 (784)
.|+|+||+.++..+.
T Consensus 67 ~I~f~eF~~~~~~~~ 81 (88)
T cd05030 67 QLSFEEFLVLVIKVG 81 (88)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999987654
No 159
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.52 E-value=0.00028 Score=63.79 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccC--CCCcccHHHHHHHHhhhhccCCCC
Q 047110 127 QTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRN--FDGKIDEIDMKQTILGSASANKLS 203 (784)
Q Consensus 127 ~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~d--gdG~Is~~El~~~l~~~~~~~~~~ 203 (784)
+..++.+++|. +||..+| |.|+..+--+.|..++ .+++.++...-..++++ +--+||++++.-+++...... ..
T Consensus 8 d~~~e~ke~F~-lfD~~gD-~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk-~q 84 (152)
T KOG0030|consen 8 DQMEEFKEAFL-LFDRTGD-GKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK-DQ 84 (152)
T ss_pred chHHHHHHHHH-HHhccCc-ccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc-cc
Confidence 44467899999 7999997 9999999999999999 88899999999999988 667999999999998755432 22
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 204 MTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 204 ~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.+ .+..-+-++-+|++++|.|...|++
T Consensus 85 ~t----~edfvegLrvFDkeg~G~i~~aeLR 111 (152)
T KOG0030|consen 85 GT----YEDFVEGLRVFDKEGNGTIMGAELR 111 (152)
T ss_pred Cc----HHHHHHHHHhhcccCCcceeHHHHH
Confidence 21 2222335667999999999988886
No 160
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.48 E-value=0.00015 Score=48.01 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHh
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRM 161 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~ 161 (784)
+++++|+ .+|+|+| |+||++||..+|..+
T Consensus 1 E~~~~F~-~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFR-EFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHH-HHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHH-HHCCCCC-CcCCHHHHHHHHHhC
Confidence 4688999 5999996 999999999998753
No 161
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.47 E-value=0.00038 Score=83.39 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=99.6
Q ss_pred CChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCC-------cHHHHHHHHHHHHccCC
Q 047110 72 TNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQ-------TPEFANEILRALRGRSE 144 (784)
Q Consensus 72 ~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~d~~~ 144 (784)
++..+.+..-+|+.||.+.+| .++.++|+.|+ +++|..- ++.+.+++++ +.|.+.
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G---~Ldhq~F~sCL--------------rslgY~lpmvEe~~~~p~fe~~ld-~vDP~r 2309 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNG---RLDHQHFKSCL--------------RSLGYDLPMVEEGEPEPEFEEILD-LVDPNR 2309 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhcc---CCcHHHHHHHH--------------HhcCCCCcccccCCCChhHHHHHH-hcCCCC
Confidence 456678899999999999999 99999999999 5666532 1236888999 699999
Q ss_pred CCccccHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcC
Q 047110 145 WKVDITKNELRDYWHRMA---GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLD 221 (784)
Q Consensus 145 d~g~I~f~ef~~~~~~~~---~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D 221 (784)
+ |+|+..||+++|-... -...++++.||+-.|. |.-||+++|+..-|. .++++--+.+|=.-+|
T Consensus 2310 ~-G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e 2376 (2399)
T KOG0040|consen 2310 D-GYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAE 2376 (2399)
T ss_pred c-CcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcc
Confidence 6 9999999999997654 2234589999999999 889999999876652 3444444556666666
Q ss_pred CC----CCCcccccCCC
Q 047110 222 TK----KRGYLEVTNPH 234 (784)
Q Consensus 222 ~d----~dG~i~~~eF~ 234 (784)
.- --+.++|.+|.
T Consensus 2377 ~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2377 TSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred cccCCCccccccHHHHH
Confidence 53 23446666653
No 162
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.45 E-value=0.00041 Score=66.45 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=74.8
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
++..+++..+..|+++|.|.|| +|+..|++..| .-+|.+.+.-.+..|+.. .|.|.| |.|+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDg---fIdl~ELK~mm--------------EKLgapQTHL~lK~mike-Vded~d-gklS 153 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDG---FIDLMELKRMM--------------EKLGAPQTHLGLKNMIKE-VDEDFD-GKLS 153 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccc---cccHHHHHHHH--------------HHhCCchhhHHHHHHHHH-hhcccc-cchh
Confidence 3456788899999999999999 99999999999 334888888888999995 899997 9999
Q ss_pred HHHHHHHHHHhc-C--CHHHHHHHHHHH--hccCCCCcccHHHHH
Q 047110 151 KNELRDYWHRMA-G--SVDSRIQLFFYM--CDRNFDGKIDEIDMK 190 (784)
Q Consensus 151 f~ef~~~~~~~~-~--~~~~~l~~aF~~--~D~dgdG~Is~~El~ 190 (784)
|.||+-...... + ..+..+..+=+. .|...-|.--...|-
T Consensus 154 freflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 154 FREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHH
Confidence 999987765433 1 223333333333 566666666655553
No 163
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.27 E-value=0.001 Score=56.78 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHH
Q 047110 75 EWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNEL 154 (784)
Q Consensus 75 ~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef 154 (784)
.+..|-..|.++.+ +++ .+++.||+..+.++ + ...++-..+++.++++++. .|.|+| |.|||+||
T Consensus 6 ai~~lI~~FhkYaG-~~~---tLsk~Elk~Ll~~E-l--------p~~l~~~~d~~~vd~im~~-LD~n~D-g~vdF~EF 70 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKN---YLNRDDLQKLMEKE-F--------SEFLKNQNDPMAVDKIMKD-LDDCRD-GKVGFQSF 70 (91)
T ss_pred HHHHHHHHHHHHcC-CCC---cCCHHHHHHHHHHH-h--------HHHHcCCCCHHHHHHHHHH-hCCCCC-CcCcHHHH
Confidence 45668889999984 345 79999999999322 1 2344555677889999995 899997 99999999
Q ss_pred HHHHHHhc
Q 047110 155 RDYWHRMA 162 (784)
Q Consensus 155 ~~~~~~~~ 162 (784)
+.++..+.
T Consensus 71 ~~Lv~~l~ 78 (91)
T cd05024 71 FSLIAGLL 78 (91)
T ss_pred HHHHHHHH
Confidence 99887654
No 164
>PF14658 EF-hand_9: EF-hand domain
Probab=97.23 E-value=0.00061 Score=54.10 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCC-CCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHH
Q 047110 82 RFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAM-QQTPEFANEILRALRGRSEWKVDITKNELRDYWHR 160 (784)
Q Consensus 82 ~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~ 160 (784)
.|+.+|.++.| .|...++..+| +.++. .+.+.+++.+.++ .|.++.+|.|+|++|+..|+.
T Consensus 3 ~F~~fD~~~tG---~V~v~~l~~~L--------------ra~~~~~p~e~~Lq~l~~e-lDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTG---RVPVSDLITYL--------------RAVTGRSPEESELQDLINE-LDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCc---eEeHHHHHHHH--------------HHHcCCCCcHHHHHHHHHH-hCCCCCCceEeHHHHHHHHHH
Confidence 46666666667 67777777776 55565 5555566777763 666652267777777776653
No 165
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.076 Score=54.74 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=125.5
Q ss_pred eeeEEEEEeEeeCCCEEEEEEecCCCce----ecCCcEEEEecCCCCC--------------------CcccccccccC-
Q 047110 494 IYEIKNLTPSLYPGKVLSLKMQKPEGFR----YRAGMYMFVQCPEISP--------------------FEWHPFSLTSG- 548 (784)
Q Consensus 494 ~~~~~v~~~~~~~~~v~~l~l~~p~~~~----~~pGQ~v~l~~p~~~~--------------------~~~HPFTIaS~- 548 (784)
.+.++|+.++.++++++++++..+.... ..++||+.|.+|..+. ...|+|||.+.
T Consensus 17 ~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d 96 (265)
T COG2375 17 LHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVD 96 (265)
T ss_pred ceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeec
Confidence 4678899999999999999998876332 3344599999986431 22789999755
Q ss_pred CCCCeE--EEEEE-ecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCCCCCCCCCCeEEEEEcCCCHHHHHHHHHHHH
Q 047110 549 PADDFL--SVHIR-ALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGASSQDYVKYDVVLLIGLGIGATPFISIIRDVA 625 (784)
Q Consensus 549 p~~~~l--~l~Ir-~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~lsil~~l~ 625 (784)
+...++ .|++- ..|.-+.. +. +.++|+++.|-||=|...+ ...++.++|+|==+++-.+..+|.++-
T Consensus 97 ~~~~e~~vDfVlH~~~gpas~W----A~-----~a~~GD~l~i~GP~g~~~p-~~~~~~~lLigDetAlPAIa~iLE~lp 166 (265)
T COG2375 97 AAAGELDVDFVLHGEGGPASRW----AR-----TAQPGDTLTIMGPRGSLVP-PEAADWYLLIGDETALPAIARILETLP 166 (265)
T ss_pred ccccEEEEEEEEcCCCCcchhh----Hh-----hCCCCCEEEEeCCCCCCCC-CCCcceEEEeccccchHHHHHHHHhCC
Confidence 334444 34444 22222221 11 1358999999999999654 567889999999999999999998764
Q ss_pred HHhhhhhcccccccccCCCCCccEEEEEEEecCCCcHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCCCCchhhHHHHH
Q 047110 626 NNAQKAEFDQVAGSVCKIPKGPLKAYLYWVTREQISFEWFRDVITEISKIYLKQPVIEMHNFLSSVYQEGDGRSAILSVI 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~~~~~~L~~l~~~~~~~~~l~v~i~vT~~~~~~d~~~~~~~~~ 705 (784)
.. .+.+.+-.+++.++.. .+. ....++++-....
T Consensus 167 ~~--------------------~~~~a~lev~d~ad~~-------~l~----~~~~l~~~Wl~r~--------------- 200 (265)
T COG2375 167 AD--------------------TPAEAFLEVDDAADRD-------ELP----SPDDLELEWLARD--------------- 200 (265)
T ss_pred CC--------------------CceEEEEEeCChHHhh-------ccC----CCCceeEEEecCC---------------
Confidence 32 2335555666665441 111 2345555433221
Q ss_pred HHhhhhccCccccCCCCceeeecCCChHHHHHHHHHh--CCCCeEEEEEeCChhHHHHHHHHHHh
Q 047110 706 QALHYARTGIDIISKTPMWTHYSRPDWFNVFSKLARR--HPGERIGVFYCGSLLLGKELEGLCTT 768 (784)
Q Consensus 706 ~~~~~~~~~~d~~~g~~~~~~~GRPd~~~i~~~~~~~--~~~~~~~V~vCGP~~m~~~v~~~~~~ 768 (784)
+.|. ..++.....+ .+.+...|++.|-.++++.+|+.+++
T Consensus 201 ----------------------~~~~-~~ll~~a~~~~~~P~~~~~vwiagE~~~v~~~Rk~L~~ 242 (265)
T COG2375 201 ----------------------DAPT-EQLLAAALAQAALPAGDYYVWIAGEASAVKAIRKFLRN 242 (265)
T ss_pred ----------------------Cccc-hHHHHHHHhcccCCCCceEEEEeccHHHHHHHHHHHhh
Confidence 1121 1223322222 23345789999999999999999877
No 166
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.17 E-value=0.001 Score=60.39 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRD 156 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~ 156 (784)
+++-++|. .|++| .++.++|...+. -...+.+..-.+...|+ ..|-|+| +.|.-+++..
T Consensus 74 ~ri~e~FS---eDG~G---nlsfddFlDmfS-------------V~sE~APrdlK~~YAFk-IYDfd~D-~~i~~~DL~~ 132 (189)
T KOG0038|consen 74 RRICEVFS---EDGRG---NLSFDDFLDMFS-------------VFSEMAPRDLKAKYAFK-IYDFDGD-EFIGHDDLEK 132 (189)
T ss_pred HHHHHHhc---cCCCC---cccHHHHHHHHH-------------HHHhhChHHhhhhheeE-EeecCCC-CcccHHHHHH
Confidence 34555555 45689 899999998871 01112233234566677 5888996 9999999999
Q ss_pred HHHHhc--CCHHH----HHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 157 YWHRMA--GSVDS----RIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 157 ~~~~~~--~~~~~----~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
.+..+. +-.++ -+....+..|.||||+++..||..|+..
T Consensus 133 ~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 133 TLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 988876 32333 3566788889999999999999999853
No 167
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.13 E-value=0.00056 Score=67.28 Aligned_cols=147 Identities=12% Similarity=0.229 Sum_probs=87.6
Q ss_pred HHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCC----CCcHHHHHHHHHHHHccCCCCccccH----
Q 047110 80 EARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAM----QQTPEFANEILRALRGRSEWKVDITK---- 151 (784)
Q Consensus 80 ~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~d~~~d~g~I~f---- 151 (784)
+-.|+..|.|+|| .|+++|++--+-+.+ -+....+ ...+.. +.+ ++.+.+.+ -+++.+ +..|-
T Consensus 143 kthFraVDpdgDG---hvsWdEykvkFlask-ghsekev-adairlneelkVD-eEtqevle--nlkdRw-yqaDsppad 213 (362)
T KOG4251|consen 143 KTHFRAVDPDGDG---HVSWDEYKVKFLASK-GHSEKEV-ADAIRLNEELKVD-EETQEVLE--NLKDRW-YQADSPPAD 213 (362)
T ss_pred hhheeeeCCCCCC---ceehhhhhhHHHhhc-CcchHHH-HHHhhccCccccc-HHHHHHHH--hhhhhh-ccccCchhh
Confidence 3458888999999 999999986541110 0000000 000011 111 23344333 345553 55555
Q ss_pred -----HHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccC-CCCCChHHHHHHHHHHHHHcCCC
Q 047110 152 -----NELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASAN-KLSMTHEEAQEYAASIMEFLDTK 223 (784)
Q Consensus 152 -----~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d 223 (784)
+||...+..-. +.-..-++.+-..+|+|||-.+|..||....-...... .-++.+...++-.++.=+.+|.|
T Consensus 214 lllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsN 293 (362)
T KOG4251|consen 214 LLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSN 293 (362)
T ss_pred hhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcC
Confidence 88988776433 44556678888999999999999999987663222111 11111233444455666679999
Q ss_pred CCCcccccCCCC
Q 047110 224 KRGYLEVTNPHK 235 (784)
Q Consensus 224 ~dG~i~~~eF~~ 235 (784)
+||.++++|+..
T Consensus 294 hDGivTaeELe~ 305 (362)
T KOG4251|consen 294 HDGIVTAEELED 305 (362)
T ss_pred CccceeHHHHHh
Confidence 999999999863
No 168
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.12 E-value=0.00087 Score=73.57 Aligned_cols=60 Identities=27% Similarity=0.216 Sum_probs=51.8
Q ss_pred ccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 122 FVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
..|.+.-+.++..+|+ ++|.|+| |.|+.+||.. ++.+|+.+|.|+||.|+.+||++.+..
T Consensus 326 ~~~~~~~~~~l~~aF~-~~D~dgd-G~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 326 LEGGEAFTHAAQEIFR-LYDLDGD-GFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhccChhhHHHHHHHH-HhCCCCC-CcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3466667778999999 6999996 9999999952 467899999999999999999999864
No 169
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.12 E-value=0.0024 Score=58.91 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=75.4
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHH
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEA 209 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~ 209 (784)
+.++.|+ +.|.|+| |.|+.+++..++..++ ..++++|..|++. ..|-|.+.-|..++-..+.. .+ .
T Consensus 33 EfKEAF~-~mDqnrD-G~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~g--td-----p 99 (171)
T KOG0031|consen 33 EFKEAFN-LMDQNRD-GFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNG--TD-----P 99 (171)
T ss_pred HHHHHHH-HHhccCC-CcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcC--CC-----H
Confidence 5677788 7999997 9999999999999999 7788999999974 77999999988888443322 12 4
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCC
Q 047110 210 QEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 210 ~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
++.+...|..+|.+++|.|.-+.++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lr 124 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLR 124 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHH
Confidence 7788889999999999999877765
No 170
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.90 E-value=0.0018 Score=55.25 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.+-..|..|-. ++|.+++.||+.+|+.-+..- +.. ..-...++++|+..|.|+||.|+|+||.
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~-l~~--~~d~~~vd~im~~LD~n~Dg~vdF~EF~ 71 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEF-LKN--QNDPMAVDKIMKDLDDCRDGKVGFQSFF 71 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHH-HcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 35557888873 346999999999996533210 110 1124568889999999999999999996
No 171
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0015 Score=56.79 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=51.9
Q ss_pred HHHHHhccCCCCcccHHHHHHHHhhhhc------cCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 171 LFFYMCDRNFDGKIDEIDMKQTILGSAS------ANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 171 ~aF~~~D~dgdG~Is~~El~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
--|.|.|.|+||+++--|+...+..... +.---.++.+++..++.+++.-|.|+||+|+|-||.+
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3699999999999999999998853221 1111124778889999999999999999999999974
No 172
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.87 E-value=0.0022 Score=68.33 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-----CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHRMA-----GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-----~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
..++.+|+ +.|.|+ +|.|+.+||.+++..++ .-.++++-+.-+..|.|+||+|+.+||.+.+..
T Consensus 547 s~LetiF~-~iD~D~-SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFN-IIDADN-SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHH-HhccCC-CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34788999 699999 69999999999988776 345778888899999999999999999999864
No 173
>PF14658 EF-hand_9: EF-hand domain
Probab=96.86 E-value=0.0032 Score=50.09 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHccCCCCccccHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCC-CcccHHHHHHHHhh
Q 047110 134 EILRALRGRSEWKVDITKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFD-GKIDEIDMKQTILG 195 (784)
Q Consensus 134 ~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgd-G~Is~~El~~~l~~ 195 (784)
.+|+ ++|.++ .|.|.-.++..+|..+. ...+++++.+...+|.||. |.|++++|..+|+.
T Consensus 2 ~~F~-~fD~~~-tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFD-AFDTQK-TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchh-hcCCcC-CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3688 599999 59999999999999988 6678899999999999988 99999999999963
No 174
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.79 E-value=0.0042 Score=54.93 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccH
Q 047110 72 TNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITK 151 (784)
Q Consensus 72 ~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f 151 (784)
+++|.++..+.|+.+|. ++| .|+-++...++.| ...+.+.+..+++ +.|.|+| |++|+
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g---~isg~~a~~~f~~----------------S~L~~~~L~~IW~-LaD~~~d-G~L~~ 62 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDG---KISGDQAREFFMK----------------SGLPRDVLAQIWN-LADIDND-GKLDF 62 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STT---EEEHHHHHHHHHH----------------TTSSHHHHHHHHH-HH-SSSS-SEEEH
T ss_pred CHHHHHHHHHHHHhcCC-CCC---eEeHHHHHHHHHH----------------cCCCHHHHHHHHh-hhcCCCC-CcCCH
Confidence 46677888999998874 678 8999998888831 2234567889999 7999996 99999
Q ss_pred HHHHHHHHHh
Q 047110 152 NELRDYWHRM 161 (784)
Q Consensus 152 ~ef~~~~~~~ 161 (784)
+||+.+|..+
T Consensus 63 ~EF~iAm~Li 72 (104)
T PF12763_consen 63 EEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888643
No 175
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.63 E-value=0.0061 Score=45.67 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 148 DITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 148 ~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
.++|+|...++..+. ...++.++.+|+.+|++++|.+..+|+...++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 378999999998888 788899999999999999999999999998864
No 176
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.25 E-value=0.0037 Score=42.15 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHHHHHHcccCCCCccccchhchHHHH
Q 047110 78 DVEARFDRLAYTKNGTEPVIKWSDFSFCI 106 (784)
Q Consensus 78 ~l~~~F~~~d~~~dG~~~~I~~~e~~~~~ 106 (784)
+++++|+.+|.|+|| .|+.+||..++
T Consensus 1 ~l~~~F~~~D~d~dG---~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDG---FIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSS---EEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCC---cCcHHHHHHHH
Confidence 478999999999999 99999999998
No 177
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.03 E-value=0.0065 Score=38.72 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=22.1
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCI 106 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~ 106 (784)
|++.|+.+|.|+|| .|+.+||...+
T Consensus 1 l~~~F~~~D~d~DG---~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDG---KISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSS---EEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCC---cCCHHHHHHHC
Confidence 56789999999999 99999998753
No 178
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.88 E-value=0.024 Score=68.74 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=74.7
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHhc---CC-----HHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCC
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRMA---GS-----VDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKL 202 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~---~~-----~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~ 202 (784)
+...||+ .||++. +|.+|+++|..-+..++ +. ++.+++....+.|.+.||+|+..|..+.|-.....| +
T Consensus 2254 EFs~~fk-hFDkek-~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN-I 2330 (2399)
T KOG0040|consen 2254 EFSMMFK-HFDKEK-NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN-I 2330 (2399)
T ss_pred HHHHHHH-Hhchhh-ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc-c
Confidence 4577898 699999 59999999999998876 33 344999999999999999999999999995433333 2
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 203 SMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
. ..+.++..|+.+|. +.-+|+-++..
T Consensus 2331 ~-----s~~eIE~AfraL~a-~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2331 L-----SSEEIEDAFRALDA-GKPYVTKEELY 2356 (2399)
T ss_pred c-----chHHHHHHHHHhhc-CCccccHHHHH
Confidence 2 13357789999998 77788876653
No 179
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.73 E-value=0.01 Score=38.11 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.3
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 169 IQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 169 l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 57789999999999999999888875
No 180
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.73 E-value=0.013 Score=51.85 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
....+|+. .|. ++ |.|+-++-...+..- +-+.+.|..++.+.|.|+||+++.+||.-+|.
T Consensus 11 ~y~~~F~~-l~~-~~-g~isg~~a~~~f~~S-~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 11 KYDQIFQS-LDP-QD-GKISGDQAREFFMKS-GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHC-TSS-ST-TEEEHHHHHHHHHHT-TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHh-cCC-CC-CeEeHHHHHHHHHHc-CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 45566663 342 32 677777666554432 34446677777777777777777777766664
No 181
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.71 E-value=0.024 Score=61.63 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=61.2
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHH--HHhc-CCHHH------------HHHH---HHHHhccCCCCcccHHHHHHHH
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYW--HRMA-GSVDS------------RIQL---FFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~--~~~~-~~~~~------------~l~~---aF~~~D~dgdG~Is~~El~~~l 193 (784)
++++|= +.+..+ +|+|+..|..... ..+. ...++ .... .|-..|+|.||.|+++||++.-
T Consensus 227 i~rIFy-~~nrs~-tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 227 IQRIFY-YLNRSR-TGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred hhhhhe-eeCCcc-CCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 466666 578888 5999999987642 2222 11221 1222 3777899999999999999986
Q ss_pred hhhhccCCCCCChHHHHHHHHHHHHHc----CCCCCCcccccCCC
Q 047110 194 LGSASANKLSMTHEEAQEYAASIMEFL----DTKKRGYLEVTNPH 234 (784)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----D~d~dG~i~~~eF~ 234 (784)
... .....++++|.++ -.-.+|+++|++|.
T Consensus 305 d~t-----------lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv 338 (493)
T KOG2562|consen 305 DHT-----------LTERIVDRIFSQVPRGFTVKVEGRMDYKDFV 338 (493)
T ss_pred ccc-----------hhhHHHHHHHhhccccceeeecCcccHHHHH
Confidence 321 2356788888843 34468999999886
No 182
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.61 E-value=0.0049 Score=55.54 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCC
Q 047110 163 GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNP 233 (784)
Q Consensus 163 ~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF 233 (784)
......+.+.|...|.|+||.++..|++.+...+.. .+.=++..++.-|.|+||.||+.|+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~----------~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP----------PEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST----------TGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh----------hHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 455678999999999999999999999888653211 1112566888999999999999885
No 183
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.59 E-value=0.1 Score=61.79 Aligned_cols=210 Identities=12% Similarity=0.061 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHHhc---------CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccC
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHRMA---------GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASAN 200 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~---------~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~ 200 (784)
+-.+-+|. ..|. ++ |.++-+|+..++.... ...++....+++.-|.+..|++..+++..++......
T Consensus 18 ~~l~~~f~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~~- 93 (646)
T KOG0039|consen 18 DKLQTFFD-MYDK-GD-GKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPTL- 93 (646)
T ss_pred HHHHHHHH-HHhh-hc-CCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchHH-
Confidence 34677777 4666 53 8999999988765432 2345566778999999999999999999988531110
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC-CCCCCcccchhhHhhhccceeeehhHHHHHHHHHHHHH-HH---
Q 047110 201 KLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK-DDLYHEPMSKNEVRFRSYWRRAWIVLFWLLICAVLFTW-KF--- 275 (784)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~l~~~-~~--- 275 (784)
-.+-..+-..+...-.+...... +.. .....+............+....++.+.+++...-+.. .+
T Consensus 94 ------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~ 164 (646)
T KOG0039|consen 94 ------LFAILLSFANLSLLLSQPLKPTR---RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGT 164 (646)
T ss_pred ------HHHHHHHHHHHHhhhcccccccc---ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000000011111111111111 111 11111111111111122222222222222222211111 00
Q ss_pred -------Hhcc--C-cc-hhhhhcchhhhcchhhhhhh-hHhHHHHHHhhhhh-hhhhcccccccccccCchhhhHHHHH
Q 047110 276 -------IQYS--H-RP-AFQVMGYCLSTAKGAAETLK-LNMALILLPVSRNT-VTWLRKKRWLSSIIPFNDNINFHKLI 342 (784)
Q Consensus 276 -------~~~~--~-~~-~~~~~g~~~~~ar~~~~~~~-~n~~ll~l~~~Rn~-l~~L~~~~~l~~~~~~d~~~~~Hr~~ 342 (784)
..+. . .. .+....+.+.+.|.+...+. ...++..+|..||+ +-++.| +++..++.+|+|+
T Consensus 165 ~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g-------~~~~~~~~~H~w~ 237 (646)
T KOG0039|consen 165 RHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVA-------LTIAVFILLHIWL 237 (646)
T ss_pred hhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHH-------HHHHHHHHHHHHH
Confidence 0011 0 11 11122223334444444433 44555668999985 888888 9999999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 047110 343 ACGIVVGVILHGGTHLA 359 (784)
Q Consensus 343 g~~~~~~~~vH~~~~~~ 359 (784)
|++++...++|+..++.
T Consensus 238 ~~~~~~~~~ih~~~~~~ 254 (646)
T KOG0039|consen 238 HLVNFFPFLVHGLEYTI 254 (646)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 99999999999998874
No 184
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.57 E-value=0.016 Score=65.47 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=73.8
Q ss_pred cCChhHHHHHHHHHHHcc-----------cCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHH
Q 047110 71 FTNLEWTDVEARFDRLAY-----------TKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRAL 139 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~-----------~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (784)
.+..+++.|+.+|++--. +-++-++.|+.+.|...++ .......+..+++++|+ +
T Consensus 498 lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~-------------~l~pw~~s~~~~~rlF~-l 563 (671)
T KOG4347|consen 498 LTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFR-------------ELLPWAVSLIFLERLFR-L 563 (671)
T ss_pred cCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhh-------------ccCchhHHHHHHHHHHH-h
Confidence 556777888888876421 1111122244444444441 11122234458899999 6
Q ss_pred HccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHH
Q 047110 140 RGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDM 189 (784)
Q Consensus 140 ~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El 189 (784)
.|.+++ |.++|.+++..+..+. ++.-++++.+|+++|.++| ..+.+|.
T Consensus 564 ~D~s~~-g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 564 LDDSMT-GLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cccCCc-ceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 899885 9999999999999998 8889999999999999999 9999987
No 185
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.22 E-value=0.046 Score=41.05 Aligned_cols=50 Identities=10% Similarity=0.405 Sum_probs=37.9
Q ss_pred ccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHh
Q 047110 96 VIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYWHRM 161 (784)
Q Consensus 96 ~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~ 161 (784)
+++.+|.+..+ +.+....+++.+..+|+. .|+++ +|.++.+||...+..+
T Consensus 1 kmsf~Evk~lL--------------k~~NI~~~~~yA~~LFq~-~D~s~-~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLL--------------KMMNIEMDDEYARQLFQE-CDKSQ-SGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHH--------------HHTT----HHHHHHHHHH-H-SSS-SSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--------------HHHccCcCHHHHHHHHHH-hcccC-CCCccHHHHHHHHHHh
Confidence 36788888888 566788888999999996 99999 4999999999987654
No 186
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.09 E-value=0.084 Score=47.97 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=51.7
Q ss_pred EEEEeEeeCCCEEEEEEecCC--Cce-ecCCcEEEEecCCCCCC---------------------cccccccccC-CCCC
Q 047110 498 KNLTPSLYPGKVLSLKMQKPE--GFR-YRAGMYMFVQCPEISPF---------------------EWHPFSLTSG-PADD 552 (784)
Q Consensus 498 ~v~~~~~~~~~v~~l~l~~p~--~~~-~~pGQ~v~l~~p~~~~~---------------------~~HPFTIaS~-p~~~ 552 (784)
+|++++.+++++++|++..+. .+. +.||||+.|.+|....- ..+.||+.+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 467889999999999998764 333 57999999999865421 4688999876 5567
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccCCCCCEEEEeCCCCCC
Q 047110 553 FLSVHIRALGDWTYRLYGIFQEEMLGAAKGFPKVYIDGPYGAS 595 (784)
Q Consensus 553 ~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~~~~~v~i~GPyG~~ 595 (784)
++.|-+-..|+- .--...+.. .++|+.+.|-||-|.|
T Consensus 81 ~l~iDfv~Hg~~-Gpas~WA~~-----A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDE-GPASRWARS-----ARPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS---HHHHHHHH-------TT-EEEEEEEE---
T ss_pred EEEEEEEECCCC-CchHHHHhh-----CCCCCEEEEeCCCCCC
Confidence 888777766651 000111111 2589999999998764
No 187
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.08 E-value=0.049 Score=59.31 Aligned_cols=97 Identities=16% Similarity=0.272 Sum_probs=71.3
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYW 158 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~ 158 (784)
....|..+|+.++| .++.+++.+++++..+ ..-...+-+.+++...|.. ++. -.++|.||-+.+
T Consensus 110 ~~~aFqlFDr~~~~---~vs~~~~~~if~~t~l--------~~~~~f~~d~efI~~~Fg~--~~~---r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNG---EVSFEDVADIFGQTNL--------HHHIPFNWDSEFIKLHFGD--IRK---RHLNYAEFTQFL 173 (694)
T ss_pred HHHHHHHhcccCCC---ceehHHHHHHHhcccc--------ccCCCccCCcchHHHHhhh--HHH---HhccHHHHHHHH
Confidence 45567778877789 8999999999832221 1112234456778876662 222 479999999988
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 159 HRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 159 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
..+. +|..+.+|+..|+.++|.||.-+++.+|.
T Consensus 174 h~~~---~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 174 HEFQ---LEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHHH---HHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 8653 55578899999999999999999999984
No 188
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.90 E-value=0.053 Score=59.65 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=59.2
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.++.|+.++.+.|...| |++| +|+..|+..+++|.+. ..| ...+++++.+... .+.|.+ |.|+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G---~v~~~~l~~~f~k~~~----------~~g-~~~~eei~~~l~~-~~~~~~-g~v~ 75 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKG---YVTVYELPDAFKKAKL----------PLG-YFVREEIKEILGE-VGVDAD-GRVE 75 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCC---eeehHHhHHHHHHhcc----------ccc-chhHHHHHHHHhc-cCCCcC-CccC
Confidence 56788999999999999 8999 9999999999954433 112 2345778888885 888985 9999
Q ss_pred HHHHHHHHHHhc
Q 047110 151 KNELRDYWHRMA 162 (784)
Q Consensus 151 f~ef~~~~~~~~ 162 (784)
||||+..+-.+.
T Consensus 76 fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 76 FEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHHhhh
Confidence 999999665443
No 189
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.86 E-value=0.03 Score=61.47 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=50.1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
++++.|...| |++|+|+..|+..++....... .-..+++++.++.+.+.|.||.|+||||..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVG 81 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHH
Confidence 5778899999 9999999999999996432221 334677888899999999999999999973
No 190
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.84 E-value=0.16 Score=58.93 Aligned_cols=132 Identities=11% Similarity=0.203 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHH
Q 047110 76 WTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELR 155 (784)
Q Consensus 76 ~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~ 155 (784)
...+...|++.|.|++| .+++.|...++ +.+........+.++|++ .|..+ ++.+..++|.
T Consensus 135 ~~wi~~~~~~ad~~~~~---~~~~~~~~~~~--------------~~~n~~l~~~~~~~~f~e-~~~~~-~~k~~~~~~~ 195 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNG---HMSFDEVLDLL--------------KQLNVQLSESKARRLFKE-SDNSQ-TGKLEEEEFV 195 (746)
T ss_pred HHHHHHHHHHHcccccc---ccchhhHHHHH--------------HHHHHhhhHHHHHHHHHH-HHhhc-cceehHHHHH
Confidence 35589999999999999 99999998887 233344455578888986 57667 4899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcC----CCCCCccccc
Q 047110 156 DYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLD----TKKRGYLEVT 231 (784)
Q Consensus 156 ~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D----~d~dG~i~~~ 231 (784)
.........+ +++..|..+-.+ .++.+.++|.+.++....+.+.+ .+.|.++++.+. .-..+.++++
T Consensus 196 ~~~~~~~~rp--ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~------~~~ae~ii~~~e~~k~~~~~~~l~ld 266 (746)
T KOG0169|consen 196 KFRKELTKRP--EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT------LDEAEEIIERYEPSKEFRRHGLLSLD 266 (746)
T ss_pred HHHHhhccCc--hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc------HHHHHHHHHHhhhhhhccccceecHH
Confidence 8877665222 688888887655 89999999999997653333333 334555554443 2244567777
Q ss_pred CCCC
Q 047110 232 NPHK 235 (784)
Q Consensus 232 eF~~ 235 (784)
.|-+
T Consensus 267 gF~~ 270 (746)
T KOG0169|consen 267 GFTR 270 (746)
T ss_pred HHHH
Confidence 7753
No 191
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.78 E-value=0.054 Score=56.08 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRD 156 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~ 156 (784)
+.++..|..+|.+++| .++..|-...+ .-..|.+...+.++..|+ .|+.+.| |.+.-.+|..
T Consensus 259 d~l~~~f~LFde~~tg---~~D~re~v~~l-------------avlc~p~~t~~iiq~afk-~f~v~eD-g~~ge~~ls~ 320 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTG---NGDYRETVKTL-------------AVLCGPPVTPVIIQYAFK-RFSVAED-GISGEHILSL 320 (412)
T ss_pred hhhhhhhheecCCCCC---cccHHHHhhhh-------------eeeeCCCCcHHHHHHHHH-hcccccc-cccchHHHHH
Confidence 5688999999998899 88877766665 133455667778899999 6999997 9999988888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 157 YWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 157 ~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
.+....+-.+-.+--.|...|...||+|+.+||++.+..
T Consensus 321 ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 321 ILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHhcCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 776544444556677899999999999999999999853
No 192
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.095 Score=45.92 Aligned_cols=70 Identities=11% Similarity=-0.053 Sum_probs=46.2
Q ss_pred HHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHH---HccCCCCccccHHHHHH
Q 047110 80 EARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRAL---RGRSEWKVDITKNELRD 156 (784)
Q Consensus 80 ~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~~d~g~I~f~ef~~ 156 (784)
..-|+..|-|+|| .++--|+..+++ +.|-.+.....-..+ +++.+.++|++.+ .|.|+| |.|||.||++
T Consensus 70 fHYF~MHDldknn---~lDGiEl~kAiT---H~H~~h~~ghep~Pl-~sE~Ele~~iD~vL~DdDfN~D-G~IDYgEflK 141 (144)
T KOG4065|consen 70 FHYFSMHDLDKNN---FLDGIELLKAIT---HTHDAHDSGHEPVPL-SSEAELERLIDAVLDDDDFNGD-GVIDYGEFLK 141 (144)
T ss_pred hhhhhhhccCcCC---cchHHHHHHHHH---HHhhhhhcCCCCCCC-CCHHHHHHHHHHHhcccccCCC-ceeeHHHHHh
Confidence 4568888999999 999999988872 333333222222222 3444666666654 456786 9999999986
Q ss_pred H
Q 047110 157 Y 157 (784)
Q Consensus 157 ~ 157 (784)
.
T Consensus 142 ~ 142 (144)
T KOG4065|consen 142 R 142 (144)
T ss_pred h
Confidence 4
No 193
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.61 E-value=0.045 Score=49.33 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHH
Q 047110 75 EWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNEL 154 (784)
Q Consensus 75 ~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef 154 (784)
....+.=.|..+|.|+|| .++..|+..+. ..+ .+.+..+...++ ..|.|+| |.|++.|+
T Consensus 52 ~~~~~~W~F~~LD~n~d~---~L~~~El~~l~--------------~~l--~~~e~C~~~F~~-~CD~n~d-~~Is~~EW 110 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDG---VLDRSELKPLR--------------RPL--MPPEHCARPFFR-SCDVNKD-GKISLDEW 110 (113)
T ss_dssp GHHHHHHHHHHH--T-SS---EE-TTTTGGGG--------------STT--STTGGGHHHHHH-HH-TT-S-SSEEHHHH
T ss_pred hhhhhhhhHhhhcCCCCC---ccCHHHHHHHH--------------HHH--hhhHHHHHHHHH-HcCCCCC-CCCCHHHH
Confidence 345577789999999999 99999998886 212 333345778888 5999996 99999998
Q ss_pred HH
Q 047110 155 RD 156 (784)
Q Consensus 155 ~~ 156 (784)
..
T Consensus 111 ~~ 112 (113)
T PF10591_consen 111 CN 112 (113)
T ss_dssp HH
T ss_pred cc
Confidence 63
No 194
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.28 E-value=0.064 Score=54.95 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=50.1
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHhhhhcc-----CCCC---CChHHHHHHHHHHHHHcCCCCCCcccccCCCCCC
Q 047110 169 IQLFFYMCDRNFDGKIDEIDMKQTILGSASA-----NKLS---MTHEEAQEYAASIMEFLDTKKRGYLEVTNPHKDD 237 (784)
Q Consensus 169 l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~ 237 (784)
-+-.|.+.|.|+||+++..||...+..-+.. |.-+ .-+++..++-..+++++|+|.|-.|+++||.+++
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 4457999999999999999999998542321 1111 0123333445688999999999999999999754
No 195
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=0.48 Score=54.50 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
+.+..|.-.|+...|++|-..-+.+|... ++. +..+..|..-.|.|+||+++-|||.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lp------q~~LA~IW~LsDvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQS----GLP------QNQLAHIWTLSDVDGDGKLSADEFI 252 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhc----CCc------hhhHhhheeeeccCCCCcccHHHHH
Confidence 66778999999999999999988888431 222 3345668888999999999999997
No 196
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=88.65 E-value=0.36 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.6
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCI 106 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~ 106 (784)
++++|+.+|.|++| .|+.+||..++
T Consensus 2 ~~~~f~~~d~~~~g---~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDG---KIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCC---cEeHHHHHHHH
Confidence 67889999998899 99999999987
No 197
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.86 E-value=2.2 Score=51.15 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcH--HHHHHHHHH--HHccCCCCccc
Q 047110 74 LEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTP--EFANEILRA--LRGRSEWKVDI 149 (784)
Q Consensus 74 ~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~d~~~d~g~I 149 (784)
....++++.|..++....| ..+.++|..++ ..+|..... ..+...|.. ..|.++ .|.+
T Consensus 744 ~v~~ElrAle~~~~~~d~~---aa~~e~~~~~L--------------mslg~~~e~ee~~~~e~~~lvn~~n~l~-~~qv 805 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGG---AASPEELLRCL--------------MSLGYNTEEEEQGIAEWFRLVNKKNPLI-QGQV 805 (890)
T ss_pred HHHHHHHHHHhHHHHhhcc---cCCHHHHHHHH--------------HhcCcccchhHHHHHHHHHHHhccCccc-ccce
Confidence 4457788888888876677 89999999998 555665443 234555552 144455 4899
Q ss_pred cHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHH
Q 047110 150 TKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQ 191 (784)
Q Consensus 150 ~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~ 191 (784)
+|.||.+.|..-. .++++++..+|+..=++.. +|..+||.+
T Consensus 806 ~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 806 QLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred eHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 9999999987644 7788899999999976665 899999887
No 198
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=86.59 E-value=1.5 Score=36.88 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccC----CCCccccHHH
Q 047110 78 DVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRS----EWKVDITKNE 153 (784)
Q Consensus 78 ~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~----~d~g~I~f~e 153 (784)
+|+.+|+.+.. +.+ .|+.++|...|.+... ....+.+.+.++++. +..+ . .+.+++++
T Consensus 1 ei~~if~~ys~-~~~---~mt~~~f~~FL~~eQ~------------~~~~~~~~~~~li~~-~~~~~~~~~-~~~lt~~g 62 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKE---YMTAEEFRRFLREEQG------------EPRLTDEQAKELIEK-FEPDERNRQ-KGQLTLEG 62 (83)
T ss_dssp HHHHHHHHHCT-TSS---SEEHHHHHHHHHHTSS-------------TTSSHHHHHHHHHH-HHHHHHHHC-TTEEEHHH
T ss_pred CHHHHHHHHhC-CCC---cCCHHHHHHHHHHHhc------------cccCcHHHHHHHHHH-Hccchhhcc-cCCcCHHH
Confidence 47888999975 455 7999999999932211 112356778888885 4332 3 37999999
Q ss_pred HHHHHH
Q 047110 154 LRDYWH 159 (784)
Q Consensus 154 f~~~~~ 159 (784)
|..+|.
T Consensus 63 F~~fL~ 68 (83)
T PF09279_consen 63 FTRFLF 68 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 999885
No 199
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.08 E-value=0.69 Score=48.52 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 165 VDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 165 ~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
=...+.+||...|.|.||.++..||+.+-. .. .+.=++..|+.-|...||.|+-.|.+
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l---dk---------nE~CikpFfnsCD~~kDg~iS~~EWC 305 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL---DK---------NEACIKPFFNSCDTYKDGSISTNEWC 305 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc---cC---------chhHHHHHHhhhcccccCccccchhh
Confidence 356899999999999999999999998862 11 13336679999999999999999976
No 200
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=85.99 E-value=1.5 Score=36.93 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=49.8
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHhc---CCHHHHHHHHHHHhccC----CCCcccHHHHHHHHhh
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRMA---GSVDSRIQLFFYMCDRN----FDGKIDEIDMKQTILG 195 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~---~~~~~~l~~aF~~~D~d----gdG~Is~~El~~~l~~ 195 (784)
+++.+|+. +.. + .+.++.++|...|..-. ..+.+.++.+++.|..+ ..+.+|.++|.+.|.+
T Consensus 1 ei~~if~~-ys~-~-~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRK-YSS-D-KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHH-HCT-T-SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHH-HhC-C-CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788886 433 3 37999999999998765 34688899999999766 4899999999999954
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.07 E-value=2.2 Score=49.45 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCC-CCcHHHHHHHHHHHHccCCCCccccHHHH
Q 047110 76 WTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAM-QQTPEFANEILRALRGRSEWKVDITKNEL 154 (784)
Q Consensus 76 ~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~~d~g~I~f~ef 154 (784)
....+++|+.+|+.-.| +++-..-..++ +. ......+-.++. +.|.|+| |.++-+||
T Consensus 194 klKY~QlFNa~DktrsG---~Lsg~qaR~aL-----------------~qS~Lpq~~LA~IW~-LsDvd~D-GkL~~dEf 251 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSG---YLSGQQARSAL-----------------GQSGLPQNQLAHIWT-LSDVDGD-GKLSADEF 251 (1118)
T ss_pred hhHHHHHhhhccccccc---ccccHHHHHHH-----------------HhcCCchhhHhhhee-eeccCCC-CcccHHHH
Confidence 34588999999998899 89988888887 22 223335677888 7999997 99999999
Q ss_pred HHHHHHh
Q 047110 155 RDYWHRM 161 (784)
Q Consensus 155 ~~~~~~~ 161 (784)
.-.|..+
T Consensus 252 ilam~li 258 (1118)
T KOG1029|consen 252 ILAMHLI 258 (1118)
T ss_pred HHHHHHH
Confidence 9887643
No 202
>PLN02952 phosphoinositide phospholipase C
Probab=84.84 E-value=2.6 Score=49.01 Aligned_cols=49 Identities=4% Similarity=0.049 Sum_probs=40.5
Q ss_pred CccccHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 146 KVDITKNELRDYWHRMA---GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 146 ~g~I~f~ef~~~~~~~~---~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
+|.++|+||......+. ..+.++++.+|..|-. +++.+|.++|.+.|..
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHH
Confidence 48999999998887765 3467889999999954 4468999999999964
No 203
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.69 E-value=6.4 Score=37.85 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHHHccCCCCccccHHHHHHHHHHhc--CC------HHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 131 FANEILRALRGRSEWKVDITKNELRDYWHRMA--GS------VDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 131 ~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~------~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
-.++||+. .++.+. +.+++.|...++..-. .+ ..-+-..++.+. +|.||++++|+++.+.
T Consensus 97 kFe~iF~k-ya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 97 KFEEIFSK-YAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHH-hCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 35667775 555553 6788888877776422 11 112233334443 5567788888888777
No 204
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=80.42 E-value=3.8 Score=46.64 Aligned_cols=145 Identities=6% Similarity=0.016 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCC---Cccc
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEW---KVDI 149 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d---~g~I 149 (784)
..-.+.+.++|+.-|.|.|| .++-.|+...= | .-++.+.+..+++.+-+...+.-.+ +..+
T Consensus 191 p~~v~al~RIFki~D~d~D~---~Lsd~Eln~fQ-~------------~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~l 254 (625)
T KOG1707|consen 191 PRCVKALKRIFKISDSDNDG---ALSDAELNDFQ-K------------KCFNTPLDPQELEDVKNVVQEICPDGVYERGL 254 (625)
T ss_pred HHHHHHHHHHHhhhcccccc---ccchhhhhHHH-H------------HhcCCCCCHHHHHHHHHHHHhhcCchhhhccc
Confidence 34466799999999999999 99999988652 1 2236666666666555532222221 1266
Q ss_pred cHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 047110 150 TKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 150 ~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
+..-|+-+-..+. .-..|..--+.+.|--+.+=.++.+=+..-++. ......+. .....+....+|..+|.|+||.+
T Consensus 255 tl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~-~p~~s~EL-s~~~~~Fl~~~f~~~D~d~Dg~L 332 (625)
T KOG1707|consen 255 TLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKV-PPDQSVEL-SPKGYRFLVDVFEKFDRDNDGAL 332 (625)
T ss_pred cccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccC-CCCcceec-cHHHHHHHHHHHHhccCCCCCCc
Confidence 7777877666554 222222222333333333322322222211111 11111222 34466678899999999999999
Q ss_pred cccCCCC
Q 047110 229 EVTNPHK 235 (784)
Q Consensus 229 ~~~eF~~ 235 (784)
+-+|+..
T Consensus 333 ~p~El~~ 339 (625)
T KOG1707|consen 333 SPEELKD 339 (625)
T ss_pred CHHHHHH
Confidence 9999974
No 205
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=79.25 E-value=4.9 Score=38.63 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 167 SRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 167 ~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
++.+++|..|++.+.+.+|..|+.+|++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 68999999999999999999999999964
No 206
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=77.58 E-value=1.8 Score=45.29 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=48.1
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
+.--|. ..|.|. ++.|+-.|+.-+=..+. .....-.+.+|+.+|.|+|-.||.+|++..+..
T Consensus 335 v~w~F~-qLdkN~-nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFN-QLDKNS-NNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeee-eecccc-cCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 344466 588888 58999988665544333 456677889999999999999999999999854
No 207
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=74.87 E-value=4.9 Score=42.47 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 128 TPEFANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 128 ~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
-+..+.=||+. .|.+.| +.+|..|+..... ...|.-++.+|..+|..-||.||-+|.-..++.
T Consensus 248 CKds~gWMFnk-lD~N~D-l~Ld~sEl~~I~l---dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 248 CKDSLGWMFNK-LDTNYD-LLLDQSELRAIEL---DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhhc-cccccc-cccCHHHhhhhhc---cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 34578899995 899997 9999999876543 456778999999999999999999999999854
No 208
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.67 E-value=5.1 Score=49.08 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=93.3
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
.++..+..++|..++. .+| .++-+.-+.++. .-........++++ +.|.|.+ |.+++.
T Consensus 125 ~qe~aky~q~f~s~~p-~~g---~~sg~~~~pil~----------------~s~Lp~~~l~~iw~-l~d~d~~-g~Ld~~ 182 (847)
T KOG0998|consen 125 PQEQAKYDQIFRSLSP-SNG---LLSGDKAKPILL----------------NSKLPSDVLGRIWE-LSDIDKD-GNLDRD 182 (847)
T ss_pred HHHHHHHHHHHhccCC-CCC---ccccchhhhhhh----------------cCCCChhhhccccc-ccccccc-CCCChh
Confidence 4555667777888886 467 677766666661 22334455668888 7899985 999999
Q ss_pred HHHHHHHHhc---C------------------------------------------------------------------
Q 047110 153 ELRDYWHRMA---G------------------------------------------------------------------ 163 (784)
Q Consensus 153 ef~~~~~~~~---~------------------------------------------------------------------ 163 (784)
||...|.... .
T Consensus 183 ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~ 262 (847)
T KOG0998|consen 183 EFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLS 262 (847)
T ss_pred hhhhhhhHHHHHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccc
Confidence 9988775321 1
Q ss_pred -----------------CHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 047110 164 -----------------SVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRG 226 (784)
Q Consensus 164 -----------------~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG 226 (784)
....+...+|...|.+.||.|+-.+.+..+.. .++. ...+..+....|.+++|
T Consensus 263 ~~~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~------~~~l~~~w~l~d~~n~~ 332 (847)
T KOG0998|consen 263 LASSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS------KPRLAHVWLLADTQNTG 332 (847)
T ss_pred cccccccccccCcccChHHHHHHHHHHHhccccCCCccccccccccccc----CCCC------hhhhhhhhhhcchhccC
Confidence 01234556799999999999999999998854 2233 34466788889999999
Q ss_pred cccccCCC
Q 047110 227 YLEVTNPH 234 (784)
Q Consensus 227 ~i~~~eF~ 234 (784)
.++++||+
T Consensus 333 ~ls~~ef~ 340 (847)
T KOG0998|consen 333 TLSKDEFA 340 (847)
T ss_pred cccccccc
Confidence 99999987
No 209
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=72.46 E-value=7 Score=44.98 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHhc--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCC
Q 047110 148 DITKNELRDYWHRMA--GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKR 225 (784)
Q Consensus 148 ~I~f~ef~~~~~~~~--~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~d 225 (784)
+|+|+.|..+...+. .....-++..|+..|.+++|.+++.++..-+..+-. ..+.+.++-+|+-.|.++|
T Consensus 534 yi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 534 YIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc
Confidence 466667766665554 445667889999999999999999999888854322 2356667889999999999
Q ss_pred CcccccCC
Q 047110 226 GYLEVTNP 233 (784)
Q Consensus 226 G~i~~~eF 233 (784)
..+-||-
T Consensus 606 -~~d~e~~ 612 (671)
T KOG4347|consen 606 -ELDREEV 612 (671)
T ss_pred -ccccccc
Confidence 8777765
No 210
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=68.01 E-value=31 Score=32.96 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHH
Q 047110 79 VEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYW 158 (784)
Q Consensus 79 l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~ 158 (784)
|+++|..++.=+.++...++-..|..++.+- ..++...+...+.-+|.. +...+ ...|+|++|+..|
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~-----------~i~d~k~t~tdvDiiF~K-vk~k~-~~~I~f~~F~~aL 67 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDC-----------GIIDKKLTSTDVDIIFSK-VKAKG-ARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHT-----------SS--SSS-HHHHHHHHHH-HT-SS--SEEEHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHc-----------CCCCCCCchHHHHHHHHH-hhcCC-CcccCHHHHHHHH
Confidence 3455666642122223379999999988211 223444566678999996 44444 2679999999999
Q ss_pred HHhc
Q 047110 159 HRMA 162 (784)
Q Consensus 159 ~~~~ 162 (784)
..+.
T Consensus 68 ~~lA 71 (154)
T PF05517_consen 68 AELA 71 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 211
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.33 E-value=9 Score=42.36 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 166 DSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 166 ~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
-++|..++++.|.|.||-++..||...|-
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 44566666777777777777777766663
No 212
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=65.11 E-value=6.5 Score=31.92 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 165 VDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 165 ~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
+.|++..+|+.. .++.++||.+||++.+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 457899999999 8899999999999997
No 213
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.08 E-value=14 Score=42.01 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=47.4
Q ss_pred cCChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCcccc
Q 047110 71 FTNLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDIT 150 (784)
Q Consensus 71 ~~~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~ 150 (784)
.+..+++..+.+|..+|.|+.| .++.++....|+ ..+.+-+.+...++.++ .|.+- +|.+.
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~---~~~i~~v~~vlk--------------~~~~~~d~~~~~~~l~e-a~~~~-~g~v~ 647 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKA---YQAIADVLKVLK--------------SENVGWDEDRLHEELQE-ADENL-NGFVE 647 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHH---HHHHHHHHHHHH--------------HhcCCCCHHHHHHHHHH-HHHhh-cceee
Confidence 4556677777788888877777 777777777772 11333444455555553 55554 37788
Q ss_pred HHHHHHHHHHhc
Q 047110 151 KNELRDYWHRMA 162 (784)
Q Consensus 151 f~ef~~~~~~~~ 162 (784)
.+||.+.++.+.
T Consensus 648 l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 648 LREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHHh
Confidence 888877777665
No 214
>PLN02952 phosphoinositide phospholipase C
Probab=59.80 E-value=44 Score=39.17 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=56.9
Q ss_pred CCCCccccchhchHHHHHHhhhhhhhhccCccccCC--CCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc---CC
Q 047110 90 KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAM--QQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA---GS 164 (784)
Q Consensus 90 ~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~---~~ 164 (784)
+.| .++.+||..+. +.+.. ...++++..+|.. +-.++ +.++.++|...|.... ..
T Consensus 13 ~~g---~l~f~~f~~f~--------------~~~k~~~~~~r~ei~~lf~~-~~~~~--~~mt~~~l~~FL~~~Q~e~~~ 72 (599)
T PLN02952 13 DSG---SYNYKMFNLFN--------------RKFKITEAEPPDDVKDVFCK-FSVGG--GHMGADQLRRFLVLHQDELDC 72 (599)
T ss_pred cCC---CcCHHHHHHHH--------------HHhccccCCChHHHHHHHHH-HhCCC--CccCHHHHHHHHHHhCCCcCC
Confidence 357 89999998776 22222 2256789999996 43333 5899999999998766 23
Q ss_pred HHHHHHHHHHHh-------ccCCCCcccHHHHHHHHh
Q 047110 165 VDSRIQLFFYMC-------DRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 165 ~~~~l~~aF~~~-------D~dgdG~Is~~El~~~l~ 194 (784)
+.++++.+|+.+ ...+.+.++.++|...|.
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 73 TLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred CHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 445556555543 112345689999988884
No 215
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=58.51 E-value=6.8 Score=47.98 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 172 FFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 172 aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
.|+.||.||.|.||+.||...|.. .. .-.+.+++-++.-+..|.+...+|+||.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~---~k------~ytqse~dfllscae~dend~~~y~dfv 4115 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG---HK------HYTQSEIDFLLSCAEADENDMFDYEDFV 4115 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc---cc------cchhHHHHHHHHhhccCccccccHHHHH
Confidence 488899999999999999999943 11 1234456667777888888899999986
No 216
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=58.20 E-value=30 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
..+..+|+. .|++.+ |.++|.|-..++..+. .-.+.+++..|+..|.-++|.+..+++.+....
T Consensus 136 ~wi~~~~~~-ad~~~~-~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 136 HWIHSIFQE-ADKNKN-GHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHH-Hccccc-cccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 367888984 999995 9999999999988887 777889999999999999999999999988754
No 217
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=56.05 E-value=21 Score=30.61 Aligned_cols=62 Identities=6% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHhhh-------hccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCC
Q 047110 166 DSRIQLFFYMCDRNFDGKIDEIDMKQTILGS-------ASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPH 234 (784)
Q Consensus 166 ~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~ 234 (784)
++|.|.+|..+ .|.+|.++..-|...+..+ ++..... . ++..++..|+.. ..+-.|+.++|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg--~--~e~sv~sCF~~~--~~~~~I~~~~Fl 70 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG--Y--IEPSVRSCFQQV--QLSPKITENQFL 70 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT------HHHHHHHHHHT--TT-S-B-HHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccccc--C--cHHHHHHHhccc--CCCCccCHHHHH
Confidence 57999999999 7899999999998888542 2221122 2 566677788876 244456666664
No 218
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=55.15 E-value=11 Score=22.92 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=12.8
Q ss_pred ccCCCCcccHHHHHHHH
Q 047110 177 DRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 177 D~dgdG~Is~~El~~~l 193 (784)
|.|+||.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 78999999988876553
No 219
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=53.58 E-value=1.8e+02 Score=29.29 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 047110 336 INFHKLIACGIVVGVILHGGTHL 358 (784)
Q Consensus 336 ~~~Hr~~g~~~~~~~~vH~~~~~ 358 (784)
-..|+++|.+.++..+++...++
T Consensus 54 r~iH~~~g~i~~~~~~~~~~~~~ 76 (211)
T PRK10639 54 RILHPFVGVVMFASFIIMFFRYW 76 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999998888866544
No 220
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=53.49 E-value=5.7 Score=41.68 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
-+.+-|...|+|.++.|.+.|++-.=.-+... .....=.+.+++--|.|+|-.|+++|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~-------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~ 394 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK-------SKPRKCSRKFFKYCDLNKDKKISLDEWRG 394 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh-------ccHHHHhhhcchhcccCCCceecHHHHhh
Confidence 57889999999999999999975443221221 12344567899999999999999999974
No 221
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=52.37 E-value=72 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 167 SRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 167 ~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
--+.++..+||.+++|.|+.-+++..+.
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 3588899999999999999999988773
No 222
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=51.62 E-value=16 Score=45.01 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=39.3
Q ss_pred HHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCC-CcHHHHHHHHHHHHccCCCCccccHHHHHHH
Q 047110 83 FDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ-QTPEFANEILRALRGRSEWKVDITKNELRDY 157 (784)
Q Consensus 83 F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~ 157 (784)
|+++|.|+.| .|++.||..+|+ |.+ .+..+++-+.. ....|. +...+|+||++-
T Consensus 4063 fkeydpdgkg---iiskkdf~kame----------------~~k~ytqse~dflls-cae~de-nd~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4063 FKEYDPDGKG---IISKKDFHKAME----------------GHKHYTQSEIDFLLS-CAEADE-NDMFDYEDFVDR 4117 (5019)
T ss_pred chhcCCCCCc---cccHHHHHHHHh----------------ccccchhHHHHHHHH-hhccCc-cccccHHHHHHH
Confidence 6677777777 799999999993 222 33345666666 466777 478999999875
No 223
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=44.57 E-value=1.7e+02 Score=27.80 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=58.7
Q ss_pred HHHHHHH--HccCCCCccccHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCCh
Q 047110 133 NEILRAL--RGRSEWKVDITKNELRDYWHRMA----GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTH 206 (784)
Q Consensus 133 ~~l~~~~--~d~~~d~g~I~f~ef~~~~~~~~----~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~ 206 (784)
+++|..+ +...+ ...++=..|..++.... .-+...+..+|..+-..+...|++++|..+|..+......+.
T Consensus 2 ~~~F~~f~~fG~~~-~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~-- 78 (154)
T PF05517_consen 2 EAVFKAFASFGKKN-GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDK-- 78 (154)
T ss_dssp HHHHHHHHCSSTST-SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHhcCCc-cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccc--
Confidence 4667743 12222 25899999999999876 446678999999987777788999999999977655443321
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 047110 207 EEAQEYAASIMEFLDTKKRG 226 (784)
Q Consensus 207 ~~~~~~~~~~~~~~D~d~dG 226 (784)
...+++...+...-..--.|
T Consensus 79 ~~~~~~~~kl~~~~~P~~~g 98 (154)
T PF05517_consen 79 SSAEELKEKLTAGGGPSASG 98 (154)
T ss_dssp THHHHHHHHHHTT--SSSSS
T ss_pred ccHHHHHHHHHccCcccccc
Confidence 14566666665544443344
No 224
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.22 E-value=90 Score=34.29 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHccCCCCccccHHHHHHHHHH-hc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHhh
Q 047110 130 EFANEILRALRGRSEWKVDITKNELRDYWHR-MA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILG 195 (784)
Q Consensus 130 ~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~-~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~ 195 (784)
|.++.+.+ .+|.|. +|.||.+|=-.+|.. +. .+.+.+=++.|-- .|-.||.+||...-..
T Consensus 68 EAir~iHr-qmDDD~-nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 68 EAIRDIHR-QMDDDH-NGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHH-hccccc-CCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 45777777 588888 499999997777764 33 4555555556654 4679999999887754
No 225
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=43.58 E-value=20 Score=41.02 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHH
Q 047110 73 NLEWTDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKN 152 (784)
Q Consensus 73 ~~~~~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ 152 (784)
+...+-+...|..+|.|+|| .++.+||..++. ..-+.+-.+..... . .-.+. .|.++++
T Consensus 311 ~~~~~Fl~~~f~~~D~d~Dg---~L~p~El~~LF~-------------~~P~~pW~~~~~~~--~--t~~~~-~G~ltl~ 369 (625)
T KOG1707|consen 311 PKGYRFLVDVFEKFDRDNDG---ALSPEELKDLFS-------------TAPGSPWTSSPYKD--S--TVKNE-RGWLTLN 369 (625)
T ss_pred HHHHHHHHHHHHhccCCCCC---CcCHHHHHHHhh-------------hCCCCCCCCCcccc--c--ceecc-cceeehh
Confidence 45567799999999999999 999999999981 22222211000000 0 11123 3899999
Q ss_pred HHHHHHHHhc-CC-HHHHHHHHHHHhccCCC
Q 047110 153 ELRDYWHRMA-GS-VDSRIQLFFYMCDRNFD 181 (784)
Q Consensus 153 ef~~~~~~~~-~~-~~~~l~~aF~~~D~dgd 181 (784)
-|++.++.+. -+ ..---..+|--|+.|..
T Consensus 370 g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~ 400 (625)
T KOG1707|consen 370 GFLSQWSLMTLLDPRRTLEYLAYLGFPTDAG 400 (625)
T ss_pred hHHHHHHHHhhccHHHHHHHHHhcCCccccc
Confidence 9999888665 22 22233446777776653
No 226
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=43.53 E-value=47 Score=34.74 Aligned_cols=93 Identities=9% Similarity=0.018 Sum_probs=52.2
Q ss_pred HHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCC-Cc------HHH----HHHHHHHHHccCCCCccc
Q 047110 81 ARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ-QT------PEF----ANEILRALRGRSEWKVDI 149 (784)
Q Consensus 81 ~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~----~~~l~~~~~d~~~d~g~I 149 (784)
-.|...|-|+|| .++..|+..+++|+-. .+ ...+ +. .++ .+-+++. .|.|.| ..|
T Consensus 248 TFF~LHD~NsDG---fldeqELEaLFtkELE-----Kv----YdpkNeeDDM~EmeEErlRMREHVMk~-vDtNqD-Rlv 313 (442)
T KOG3866|consen 248 TFFALHDLNSDG---FLDEQELEALFTKELE-----KV----YDPKNEEDDMKEMEEERLRMREHVMKQ-VDTNQD-RLV 313 (442)
T ss_pred hheeeeccCCcc---cccHHHHHHHHHHHHH-----Hh----cCCCCcchHHHHHHHHHHHHHHHHHHh-cccchh-hhh
Confidence 346667778999 9999999998843311 11 1111 11 111 1223442 788886 899
Q ss_pred cHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 150 TKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 150 ~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
+.+||+..-.... +.+.+. ++ +.+..-.-|.+||++.=
T Consensus 314 tleEFL~~t~~kef~~p~e~----WE--tl~q~~~yTeEEL~~fE 352 (442)
T KOG3866|consen 314 TLEEFLNDTDNKEFNPPKEE----WE--TLGQKKVYTEEELQQFE 352 (442)
T ss_pred hHHHHHhhhhhcccCCcchh----hh--hhcccccccHHHHHHHH
Confidence 9999998765443 333221 11 22334455667776654
No 227
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=41.86 E-value=13 Score=30.17 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCI 106 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~ 106 (784)
+++.+.|+.++ ++.+ +|+.+||...+
T Consensus 6 eqv~~aFr~lA-~~Kp---yVT~~dLr~~l 31 (69)
T PF08726_consen 6 EQVEEAFRALA-GGKP---YVTEEDLRRSL 31 (69)
T ss_dssp HHHHHHHHHHC-TSSS---CEEHHHHHHHS
T ss_pred HHHHHHHHHHH-cCCC---cccHHHHHHHc
Confidence 46899999995 3455 89999999998
No 228
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=41.18 E-value=15 Score=41.77 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=47.1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
..+..|..+|.|..|+++.++..++|+.... +.+ ++.+++..+++|.+-.|+++.+||.+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~--~~d------~~~~~~~l~ea~~~~~g~v~l~e~~q 653 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENV--GWD------EDRLHEELQEADENLNGFVELREFLQ 653 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--CCC------HHHHHHHHHHHHHhhcceeeHHHHHH
Confidence 4556799999999999999999999976331 222 44566677778888899999999875
No 229
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=41.13 E-value=27 Score=42.31 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 047110 166 DSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHKD 236 (784)
Q Consensus 166 ~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~ 236 (784)
.++++..|.-+|+...|-.+.+|+.+.+..++.. .+ .+++.......+....|.++-|.++|.||..+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~--~e-~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYN--TE-EEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcc--cc-hhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 4689999999999999999999999999765543 22 15677778888999999999999999999853
No 230
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=38.12 E-value=1.1e+02 Score=28.59 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-------CCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHH
Q 047110 147 VDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNF-------DGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEF 219 (784)
Q Consensus 147 g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dg-------dG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (784)
+.++-+||..+-..+.- ...+++.+.+.|..|| ++.|+.+.|+..|+..++.+ ..++.|+++|..
T Consensus 6 ~~lsp~eF~qLq~y~ey-s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d-------~P~~lc~hLF~s 77 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD-------LPEDLCQHLFLS 77 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---------HHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC-------CCHHHHHHHHHH
Confidence 67888888776554441 1225666666664443 56999999999998766542 457889999998
Q ss_pred cCCCC
Q 047110 220 LDTKK 224 (784)
Q Consensus 220 ~D~d~ 224 (784)
+-...
T Consensus 78 F~~~~ 82 (138)
T PF14513_consen 78 FQKKP 82 (138)
T ss_dssp S----
T ss_pred HhCcc
Confidence 66544
No 231
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=38.08 E-value=72 Score=27.44 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhcc-CccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVF-PSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELR 155 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~ 155 (784)
++++-+|..+. |++| .++...|...+.+ .+-.+..+ ....+|. .+..++..|+. . .. +..|+-++|+
T Consensus 3 dKyRylFslis-d~~g---~~~~~~l~~lL~d--~lqip~~vgE~~aFg~--~e~sv~sCF~~-~--~~-~~~I~~~~Fl 70 (90)
T PF09069_consen 3 DKYRYLFSLIS-DSNG---CMDQRKLGLLLHD--VLQIPRAVGEGPAFGY--IEPSVRSCFQQ-V--QL-SPKITENQFL 70 (90)
T ss_dssp HHHHHHHHHHS--TTS----B-HHHHHHHHHH--HHHHHHHTT-GGGGT----HHHHHHHHHH-T--TT--S-B-HHHHH
T ss_pred HHHHHHHHHHc-CCCC---CCcHHHHHHHHHH--HHHHHHHhCccccccC--cHHHHHHHhcc-c--CC-CCccCHHHHH
Confidence 45777888884 5788 8999999988721 11111111 1112232 34456666663 2 12 2578888888
Q ss_pred HHHH
Q 047110 156 DYWH 159 (784)
Q Consensus 156 ~~~~ 159 (784)
+.|.
T Consensus 71 ~wl~ 74 (90)
T PF09069_consen 71 DWLM 74 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 232
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=38.02 E-value=64 Score=28.11 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=51.9
Q ss_pred CCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc--CCHHH
Q 047110 90 KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA--GSVDS 167 (784)
Q Consensus 90 ~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~--~~~~~ 167 (784)
-|| .++.+|...+-. ...+.++ .+.+...++++. +....+ ...++.+|...+.... .....
T Consensus 12 aDG---~v~~~E~~~i~~----------~l~~~~~--l~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ 74 (104)
T cd07313 12 ADG---EYDEEERAAIDR----------LLAERFG--LDAEEAAELLAE-AEALEE-EAPDLYEFTSLIKEHFDYEERLE 74 (104)
T ss_pred HcC---CCCHHHHHHHHH----------HHHHHhC--cCHHHHHHHHHH-HHHHHH-hCCCHHHHHHHHHHhCCHHHHHH
Confidence 378 888888776541 0011123 334556777763 554432 5689999998876543 34455
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 168 RIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 168 ~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
-++.++++.- -||.++..|-.-+-
T Consensus 75 ~l~~L~~vA~--ADG~~~~~E~~~l~ 98 (104)
T cd07313 75 LVEALWEVAY--ADGELDEYEEHLIR 98 (104)
T ss_pred HHHHHHHHHH--hcCCCCHHHHHHHH
Confidence 6777788866 45788888765443
No 233
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=38.00 E-value=39 Score=23.68 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 047110 335 NINFHKLIACGIVVGVILHG 354 (784)
Q Consensus 335 ~~~~Hr~~g~~~~~~~~vH~ 354 (784)
+...|+|+|.++-++..+=.
T Consensus 4 ~~~~H~W~Gl~~g~~l~~~~ 23 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFVIF 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46799999998877666543
No 234
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=37.89 E-value=2.2e+02 Score=27.36 Aligned_cols=26 Identities=12% Similarity=-0.158 Sum_probs=22.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhh
Q 047110 333 NDNINFHKLIACGIVVGVILHGGTHL 358 (784)
Q Consensus 333 d~~~~~Hr~~g~~~~~~~~vH~~~~~ 358 (784)
.....+|+++|.+.++..+++.+..+
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~ 69 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRL 69 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999988766
No 235
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.65 E-value=36 Score=37.93 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 166 DSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 166 ~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
.+..-.-|+-.-.|-+|+|+-.--++.+.. .++. -+++..|.+--|.|.||.++++|||+
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtK----Sklp------i~ELshIWeLsD~d~DGALtL~EFcA 289 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTK----SKLP------IEELSHIWELSDVDRDGALTLSEFCA 289 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhh----ccCc------hHHHHHHHhhcccCccccccHHHHHh
Confidence 344555699999999999998888888732 2333 33467899999999999999999995
No 236
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=36.17 E-value=4e+02 Score=25.55 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 047110 336 INFHKLIACGIVVGVILHGGTH 357 (784)
Q Consensus 336 ~~~Hr~~g~~~~~~~~vH~~~~ 357 (784)
..+|.++|.+++...+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999998887654
No 237
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=35.70 E-value=86 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHH-HHHHHHhhh
Q 047110 434 GYNTFWYSHHLFVFVY-ALLFVHGMF 458 (784)
Q Consensus 434 ~Ye~F~~~H~l~~~~~-v~~~~H~~~ 458 (784)
+++.....|+.++.+. ++..+|...
T Consensus 29 ~~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 29 SFDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999998654 456889764
No 238
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=35.31 E-value=74 Score=29.82 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHccc--CCCCccccchhchHHHHHHhhhhhhhhccCccccCCC----CcHHHHHHHHHHHHccCCCCccc
Q 047110 76 WTDVEARFDRLAYT--KNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQ----QTPEFANEILRALRGRSEWKVDI 149 (784)
Q Consensus 76 ~~~l~~~F~~~d~~--~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~d~~~d~g~I 149 (784)
...+++.|+.+..= ..-+++.|+-.+|...+ ...+.- .+.-.+...|.. +.... -+.|
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~Klc--------------Kdc~V~DgK~vT~tdt~i~fsK-vkg~~-~~~~ 74 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLC--------------KDCKVIDGKSVTGTDTDIVFSK-VKGKK-ARTI 74 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHH--------------hhcCcccCCcccccccceeeee-ccccc-cccc
Confidence 34455555555431 22234568888888777 222221 122245556653 33333 2689
Q ss_pred cHHHHHHHHHHhc------CCHHHHHHHHHHHhc
Q 047110 150 TKNELRDYWHRMA------GSVDSRIQLFFYMCD 177 (784)
Q Consensus 150 ~f~ef~~~~~~~~------~~~~~~l~~aF~~~D 177 (784)
+|+||...+..+. .+.++.+..+.++.-
T Consensus 75 tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 75 TFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred cHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 9999988887654 456666776666654
No 239
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=34.94 E-value=65 Score=20.98 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 047110 336 INFHKLIACGIVVGVILHGGT 356 (784)
Q Consensus 336 ~~~Hr~~g~~~~~~~~vH~~~ 356 (784)
+++|||++-++.++.++=++.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iT 22 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAIT 22 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 679999998888777765543
No 240
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=33.45 E-value=61 Score=22.14 Aligned_cols=25 Identities=12% Similarity=-0.044 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 047110 334 DNINFHKLIACGIVVGVILHGGTHL 358 (784)
Q Consensus 334 ~~~~~Hr~~g~~~~~~~~vH~~~~~ 358 (784)
....+|+|+|..+.+..++=++..+
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~ 28 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGA 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999888776655433
No 241
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=33.05 E-value=73 Score=35.85 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHH-HHHHHHHHHHccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 047110 91 NGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPE-FANEILRALRGRSEWKVDITKNELRDYWHRMAGSVDSRI 169 (784)
Q Consensus 91 dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~~~~~~~l 169 (784)
.|.-.+-+.+||.-.+ +++.+++++..+ .+.-+|+ +.|.+|- --||++|+.+++..+. +..+++
T Consensus 100 ~G~PvRaTvsemGPlL------------LsrlL~LNdtQ~gvL~i~F~-~ADd~gL-lLlDLkDLra~l~~v~-e~~~e~ 164 (502)
T PF05872_consen 100 KGHPVRATVSEMGPLL------------LSRLLELNDTQEGVLNIVFR-IADDEGL-LLLDLKDLRAMLQYVS-ENAKEL 164 (502)
T ss_pred CCceEEeeHHhhchHH------------HHHHhccchHHHHHHHHHHH-HhccCCC-ccccHHHHHHHHHHHH-hhHHHH
Confidence 3543456788888776 457778887766 5678888 6887774 6999999999998775 211222
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChH---HHHHHHHHHHHHcCCCCCCcccccCC
Q 047110 170 QLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHE---EAQEYAASIMEFLDTKKRGYLEVTNP 233 (784)
Q Consensus 170 ~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~D~d~dG~i~~~eF 233 (784)
.. .=|.||..-+-.+++.+..-+.-.. +. +..-.++.+++ .|.||.|.|+.-+-
T Consensus 165 ~~--------~yG~is~aS~gaI~R~ll~LE~qG~-d~FFGEPaldi~Dl~r-~~~~GrG~IniL~a 221 (502)
T PF05872_consen 165 SA--------EYGNISSASIGAIQRALLVLEQQGG-DQFFGEPALDIEDLMR-TDADGRGVINILAA 221 (502)
T ss_pred HH--------HcCCccHHHHHHHHHHHHHHHHcch-HhhCCCccCCHHHHhc-cCCCCCEEEEEEEh
Confidence 22 2378888887766654321100000 00 00001233333 57788888886554
No 242
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.87 E-value=1.8e+02 Score=30.18 Aligned_cols=83 Identities=8% Similarity=0.047 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHH-cccCCCCccccchhchHHHHHHhhhhhhhhccCccccCCCCcHHHHHHHHHHHHccCCCCccccHHH
Q 047110 75 EWTDVEARFDRL-AYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAMQQTPEFANEILRALRGRSEWKVDITKNE 153 (784)
Q Consensus 75 ~~~~l~~~F~~~-d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~d~g~I~f~e 153 (784)
...++.+.|..+ |.+.+. .|-.+-..... +.+|.++... ...+..-.++... .|..+-+|
T Consensus 62 s~~~l~~~f~~y~d~~d~~---~i~~dgi~~fc--------------~dlg~~p~~i-~~LvlAwkl~A~~-m~~Fsr~e 122 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDN---LIGPDGIEKFC--------------EDLGVEPEDI-SVLVLAWKLGAAT-MCEFSREE 122 (260)
T ss_pred cHHHHHHHHHHhcCccccc---ccChHHHHHHH--------------HHhCCCchhH-HHHHHHHHhccch-hhhhhHHH
Confidence 345567777766 333344 57776666666 5558766533 2233332356666 58999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 047110 154 LRDYWHRMAGSVDSRIQLFFYMC 176 (784)
Q Consensus 154 f~~~~~~~~~~~~~~l~~aF~~~ 176 (784)
|+..|..++.+..++++..++..
T Consensus 123 f~~g~~~l~~dS~d~lq~~l~~l 145 (260)
T KOG3077|consen 123 FLKGMTALGCDSIDKLQQRLDFL 145 (260)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999988866667777766543
No 243
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.38 E-value=54 Score=35.36 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhccCCCCCChHHHHHHHHHHHHHcCCCCCCcccccCCCC
Q 047110 165 VDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSASANKLSMTHEEAQEYAASIMEFLDTKKRGYLEVTNPHK 235 (784)
Q Consensus 165 ~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 235 (784)
+.+.+|++|+-+|..++|+|+-.-++.+|+..- ...+ + .+++..|=+.+|..+-|.|-.++|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vs---e--~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVS---E--PAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--cccc---C--HHHHHHhcCccChhhcceEEeccccc
Confidence 357899999999999999999999999997522 1122 1 22233344457777888888777763
No 244
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=30.30 E-value=60 Score=35.56 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.0
Q ss_pred CeEEEEEcCCC--HHHHHHHHHHHHHH
Q 047110 603 DVVLLIGLGIG--ATPFISIIRDVANN 627 (784)
Q Consensus 603 ~~vvlIagG~G--Itp~lsil~~l~~~ 627 (784)
+++++.||||| |.|.+++++.|.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 46899999999 89999999998753
No 245
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=30.19 E-value=62 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhh
Q 047110 332 FNDNINFHKLIACGIVVGVILHGGTH 357 (784)
Q Consensus 332 ~d~~~~~Hr~~g~~~~~~~~vH~~~~ 357 (784)
.+....+|.|.|.+.++++.+|...|
T Consensus 38 ~~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 38 KHFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566899999999999999998764
No 246
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=29.92 E-value=1.9e+02 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 047110 337 NFHKLIACGIVVGVILHGGT 356 (784)
Q Consensus 337 ~~Hr~~g~~~~~~~~vH~~~ 356 (784)
.+-||+..+.++-+++|.+.
T Consensus 54 ~L~~w~l~Wl~vsGlih~v~ 73 (229)
T KOG4826|consen 54 VLDKWVLCWLAVSGLIHLVL 73 (229)
T ss_pred CCcchhhHHHHhhCeeeeEE
Confidence 34577888888889999874
No 247
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=29.58 E-value=67 Score=25.53 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHhccCCCCcccHHHHHHHHhhhhccC---CCCCChHHHHHHHHHHHHHcCCCC
Q 047110 174 YMCDRNFDGKIDEIDMKQTILGSASAN---KLSMTHEEAQEYAASIMEFLDTKK 224 (784)
Q Consensus 174 ~~~D~dgdG~Is~~El~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~d~ 224 (784)
++||.+...+||.++++++++. +.+- ...-.++......-+++-+....|
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~-g~~~~V~D~ktgeDiT~~iL~QIi~e~e~~g 62 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE-GEDFKVVDAKTGEDITRSILLQIILEEESKG 62 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC-CCeEEEEECCCCcccHHHHHHHHHHHHHhcC
Confidence 4688888889999998888854 1110 011114445556666665544443
No 248
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.67 E-value=21 Score=36.81 Aligned_cols=15 Identities=13% Similarity=0.560 Sum_probs=0.0
Q ss_pred cceeeeeeheeeeeh
Q 047110 469 TTWMYIAVPVLLYAG 483 (784)
Q Consensus 469 ~~w~~~~~~~~i~~~ 483 (784)
.+|+.+..++.||.+
T Consensus 170 L~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 170 LYWLLLFLAILIWLY 184 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 456555555666654
No 249
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=26.26 E-value=1.9e+02 Score=32.42 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHh---cc----C-CCCcccHHHHHHHHhhhh-----
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMC---DR----N-FDGKIDEIDMKQTILGSA----- 197 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~---D~----d-gdG~Is~~El~~~l~~~~----- 197 (784)
.+-+|. ++.... ++.|.+--|..++...+ .+.+-+|+.+++.. |. + .-+.++++-|++.+....
T Consensus 88 eDLLFy-Liaegq-~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSq 165 (622)
T KOG0506|consen 88 EDLLFY-LIAEGQ-SEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQ 165 (622)
T ss_pred hhhhhH-HhhcCC-cCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHH
Confidence 355666 344444 48999999999999998 66666666666544 43 2 236899999999984321
Q ss_pred -ccCCCCCC-hHHHHHHHHHHHHHcCCCCCCcc
Q 047110 198 -SANKLSMT-HEEAQEYAASIMEFLDTKKRGYL 228 (784)
Q Consensus 198 -~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i 228 (784)
-.+.+-++ -++....++.+|++...-..|++
T Consensus 166 ALrkqmVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 166 ALRKQMVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred HHhcCccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 11122222 34455567778887776666664
No 250
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=25.94 E-value=6.5e+02 Score=24.85 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 047110 334 DNINFHKLIACGIVVGVILHGGTHL 358 (784)
Q Consensus 334 ~~~~~Hr~~g~~~~~~~~vH~~~~~ 358 (784)
.....|+++|.++++..++..+..+
T Consensus 47 ~~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 47 YIRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999888888765544
No 251
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.39 E-value=1.2e+02 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHHhc-C--------------------CHHHHHHHHHHHhccCCCCcc
Q 047110 147 VDITKNELRDYWHRMA-G--------------------SVDSRIQLFFYMCDRNFDGKI 184 (784)
Q Consensus 147 g~I~f~ef~~~~~~~~-~--------------------~~~~~l~~aF~~~D~dgdG~I 184 (784)
..++|+++.+-+..++ . +.++++.+||++|..|+|-.+
T Consensus 18 ~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 18 PSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccE
Confidence 3567777777666554 1 235677777777777766443
No 252
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.23 E-value=1.3e+02 Score=24.46 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=36.5
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHHhhhhc
Q 047110 147 VDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTILGSAS 198 (784)
Q Consensus 147 g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~~~~~ 198 (784)
-.+.|..+...++... +.+++..+...|+.=..+.|+++||.+.++...+
T Consensus 7 p~~~F~~L~~~l~~~l--~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHL--PPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5788888888887655 2234556666666667899999999999976443
No 253
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=24.69 E-value=1.1e+02 Score=27.02 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=32.0
Q ss_pred HHhccCCCCcccHHHHHHHHhhhhcc---CCCCCChHHHHHHHHHHHHHcCCCCC
Q 047110 174 YMCDRNFDGKIDEIDMKQTILGSASA---NKLSMTHEEAQEYAASIMEFLDTKKR 225 (784)
Q Consensus 174 ~~~D~dgdG~Is~~El~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~d~d 225 (784)
++||.+..-+||.+++++++.. +.+ ....-.++....+.-++|-+...++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~-g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~ 63 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE-GREFQVVDSKSGDDLTRSILLQIIAEEESGGE 63 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC-CCeEEEEECCCCchhHHHHHHHHHHHHHhCCC
Confidence 4688888889999999888854 111 01111255666677777776655443
No 254
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=24.42 E-value=1.7e+02 Score=29.54 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=25.2
Q ss_pred eeeEEEEEeEeeCC-----CEEEEEEecCC-CceecCCcEEEEecCC
Q 047110 494 IYEIKNLTPSLYPG-----KVLSLKMQKPE-GFRYRAGMYMFVQCPE 534 (784)
Q Consensus 494 ~~~~~v~~~~~~~~-----~v~~l~l~~p~-~~~~~pGQ~v~l~~p~ 534 (784)
.+.++|++.+.+++ ++.+|+|..+. ++.|+||+++-|..+.
T Consensus 8 p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N 54 (219)
T PF00667_consen 8 PFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPN 54 (219)
T ss_dssp -EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SS
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccC
Confidence 45667777777654 38899997754 7999999999998764
No 255
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=23.92 E-value=3.3e+02 Score=23.16 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHh
Q 047110 128 TPEFANEILRALRGRSEWKVDITKNELRDYWHRMA-GSVDSRIQLFFYMCDRNFDGKIDEIDMKQTIL 194 (784)
Q Consensus 128 ~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l~ 194 (784)
.+.++.+..+.-++.+ -.|...+|...+.... -+...+...+=...|.-.||+||.=||--..+
T Consensus 5 TK~eA~~FW~~~Fg~r---~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 5 TKAEAAEFWKTSFGKR---TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SSHHHHHHHHHHHTT----SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCC---eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 4456788887655543 4899999999998876 33323334444567999999999988865553
No 256
>PLN02228 Phosphoinositide phospholipase C
Probab=22.78 E-value=2.5e+02 Score=32.87 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHHccCCCCccccHHHHHHHHHHhc---CCHHHHHHHHHHHhccC----CCCcccHHHHHHHHhh
Q 047110 126 QQTPEFANEILRALRGRSEWKVDITKNELRDYWHRMA---GSVDSRIQLFFYMCDRN----FDGKIDEIDMKQTILG 195 (784)
Q Consensus 126 ~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~~~~~~~~---~~~~~~l~~aF~~~D~d----gdG~Is~~El~~~l~~ 195 (784)
...++++..+|.. +-. + +.++.++|...+.... ....+.++.+|..|... ..|.++.+.|...|.+
T Consensus 20 ~~~~~ei~~if~~-~s~-~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEA-YSR-N--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHH-hcC-C--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 3455789999986 332 2 5799999999998765 34456788888888543 3478999999999954
No 257
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=22.75 E-value=30 Score=33.82 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=34.0
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047110 147 VDITKNELRDYWHRMAGSVDSRIQLFFYMCDRNFDGKIDEIDMKQTI 193 (784)
Q Consensus 147 g~I~f~ef~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~El~~~l 193 (784)
|+++--|+.-+-..+ -.-+.-....|+-+|.|+||+|+.+|....+
T Consensus 203 ~~~sh~el~pl~ap~-ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 203 GYLSHTELAPLRAPL-IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccCCc-ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 777777765432222 2345567789999999999999999988877
No 258
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=22.07 E-value=2e+02 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCCCCccccHHHHHHHHH
Q 047110 132 ANEILRALRGRSEWKVDITKNELRDYWH 159 (784)
Q Consensus 132 ~~~l~~~~~d~~~d~g~I~f~ef~~~~~ 159 (784)
+-.+|+.+..++||...++.+||..++.
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 3445555555555545666666666654
No 259
>PLN02222 phosphoinositide phospholipase C 2
Probab=20.41 E-value=2.3e+02 Score=33.29 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcccCCCCccccchhchHHHHHHhhhhhhhhccCccccCC-CCcHHHHHHHHHHHHccCCCCccccHHHHH
Q 047110 77 TDVEARFDRLAYTKNGTEPVIKWSDFSFCIAKLKLLLYIIVFPSNFVAM-QQTPEFANEILRALRGRSEWKVDITKNELR 155 (784)
Q Consensus 77 ~~l~~~F~~~d~~~dG~~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~~d~g~I~f~ef~ 155 (784)
.++.++|.++.. ++ .++.++|...|.+.. +. ..+.+.++.+++.+..... .+.++++.|.
T Consensus 25 ~ei~~if~~~~~--~~---~mt~~~l~~FL~~~Q-------------~~~~~~~~~~~~ii~~~~~~~~-~~~~~~~gF~ 85 (581)
T PLN02222 25 REIKTIFEKYSE--NG---VMTVDHLHRFLIDVQ-------------KQDKATREDAQSIINSASSLLH-RNGLHLDAFF 85 (581)
T ss_pred HHHHHHHHHhcC--CC---CcCHHHHHHHHHHhc-------------CCccCCHHHHHHHHHhhhhhhh-ccCcCHHHHH
Confidence 468888888863 46 799999999883211 22 2355667888885322123 2679999999
Q ss_pred HHHH
Q 047110 156 DYWH 159 (784)
Q Consensus 156 ~~~~ 159 (784)
.+|.
T Consensus 86 ~yL~ 89 (581)
T PLN02222 86 KYLF 89 (581)
T ss_pred HHhc
Confidence 9885
No 260
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=20.13 E-value=2.9e+02 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhh
Q 047110 435 YNTFWYSHHLFVFVYA-LLFVHGM 457 (784)
Q Consensus 435 Ye~F~~~H~l~~~~~v-~~~~H~~ 457 (784)
+..+...|...+..++ ++.+|..
T Consensus 38 ~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 38 KHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999987654 5688864
Done!