BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047111
MSREFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSIS
IEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQWTFNVKVHGK

High Scoring Gene Products

Symbol, full name Information P value
AT5G53070 protein from Arabidopsis thaliana 7.3e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047111
        (106 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168377 - symbol:AT5G53070 species:3702 "Arabi...   302  7.3e-27   1


>TAIR|locus:2168377 [details] [associations]
            symbol:AT5G53070 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000244 Pfam:PF01281
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 KO:K02939 Gene3D:3.10.430.100 Gene3D:3.40.5.10
            InterPro:IPR009027 InterPro:IPR020069 InterPro:IPR020070
            PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653
            EMBL:AB018116 eggNOG:NOG277901 UniGene:At.27262 EMBL:BT002884
            EMBL:BT004396 IPI:IPI00519351 RefSeq:NP_200119.1
            ProteinModelPortal:Q9LVU5 SMR:Q9LVU5 PaxDb:Q9LVU5 PRIDE:Q9LVU5
            EnsemblPlants:AT5G53070.1 GeneID:835387 KEGG:ath:AT5G53070
            TAIR:At5g53070 HOGENOM:HOG000006313 InParanoid:Q9LVU5 OMA:PGYFRNH
            PhylomeDB:Q9LVU5 ProtClustDB:CLSN2686155 ArrayExpress:Q9LVU5
            Genevestigator:Q9LVU5 Uniprot:Q9LVU5
        Length = 221

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 56/104 (53%), Positives = 79/104 (75%)

Query:     2 SREFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISI 61
             ++E+EKAA+RL NA LVLR+  + EK ++R SKDD  ++ +P+TKEE+V++VA QL + I
Sbjct:   117 TKEYEKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKI 176

Query:    62 EPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQWTFNVKVHG 105
             +P+ + L +PL  FGEYEVP++  KTIPLP+G VQW   VKV G
Sbjct:   177 DPDNVVLAAPLETFGEYEVPLKFPKTIPLPQGTVQWILKVKVRG 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      106       106   0.00091  102 3  11 22  0.45    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  112 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.14u 0.10s 13.24t   Elapsed:  00:00:00
  Total cpu time:  13.14u 0.10s 13.24t   Elapsed:  00:00:00
  Start:  Fri May 10 17:22:26 2013   End:  Fri May 10 17:22:26 2013

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