BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047111
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1D289|RL9_MYXXD 50S ribosomal protein L9 OS=Myxococcus xanthus (strain DK 1622)
GN=rplI PE=3 SV=1
Length = 147
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 36 DPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
D +L VT ++ VA++ SI+ ++HLP P+ A G YEV +RL + +
Sbjct: 85 DQDKLFGSVTALDIAEAVAAE-GQSIDRRHIHLPEPIKALGNYEVELRLHRDV 136
>sp|Q04HQ3|RL9_OENOB 50S ribosomal protein L9 OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=rplI PE=3 SV=1
Length = 151
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 4 EFEKAARRLENARLVLRRFPNIEKLRSRESKDDPI-ELCSPVTKEELVAKVASQLSISIE 62
E +KAA LE A+ + + + + + P L VT +E+ ++A Q +++++
Sbjct: 54 EAKKAAEILEEAKQLKNKLASTKTIVQFSEHVGPDGRLNGSVTAKEIADQLAKQFNLTVD 113
Query: 63 PEYLHLPSPLSAFGEYEVPMRL 84
L LP P+ G +EVP +L
Sbjct: 114 KRKLQLPQPIKTIGLHEVPAKL 135
>sp|Q7M8Z5|RL9_WOLSU 50S ribosomal protein L9 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rplI PE=3 SV=1
Length = 150
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 3 REFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIE 62
R EK A+ LE + V + ++ L+ + L +TKE+L A + +Q I ++
Sbjct: 53 RRAEKEAQELERLKNVAKELASV-TLKIVQKVGANGSLYGAITKEDLSAALMAQKGIEVD 111
Query: 63 PEYLHLPSPLSAFGEYEVPMRLSKTI 88
+ L +P+ + G YE+ ++L I
Sbjct: 112 KKSFELKTPIKSTGIYEIEVKLGHGI 137
>sp|A7ZDF3|RL9_CAMC1 50S ribosomal protein L9 OS=Campylobacter concisus (strain 13826)
GN=rplI PE=3 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 3 REFEKAARRLENARLVLRRFPNIEKLRSRESKDDPI---------ELCSPVTKEELVAKV 53
R++E A +R A + N+EKL+ +K + L V+KEE+ A++
Sbjct: 45 RQYEAAQKR--KAEELKYEIANLEKLKEELAKVTVVVKKTLGANGSLFGSVSKEEIAAEL 102
Query: 54 ASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQWTFNVKVHG 105
+ +E + + L + L A G Y+V ++L +I T V V G
Sbjct: 103 EKTHHLVVEKKAIDLDTHLKAVGLYDVSIKLGHSI-------NATLKVDVQG 147
>sp|Q3A320|RL9_PELCD 50S ribosomal protein L9 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplI PE=3 SV=1
Length = 148
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 3 REFEKAARRLENARLVLRRFPNIEKLR---SRESKDDPIELCSPVTKEELVAKVASQLSI 59
R+ E A+++ A V++ IEK+ + + DD +L VT E+ AK+A +
Sbjct: 52 RQLEHKAQKVLQASEVVK--AQIEKVTCEFALRAGDDG-KLFGSVTSMEIQAKLAES-GV 107
Query: 60 SIEPEYLHLPSPLSAFGEYEVPMRL 84
++ + + L P+ A GEYEV ++L
Sbjct: 108 EVDRKKIQLDEPIKALGEYEVAVKL 132
>sp|B9DPY3|RL9_STACT 50S ribosomal protein L9 OS=Staphylococcus carnosus (strain TM300)
GN=rplI PE=3 SV=1
Length = 148
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + ++ +IE + +S + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKKKLEDIEVEVTAKSGEGG-KLFGSVSAKQIAQALQKQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + A G VP++L K +
Sbjct: 119 NGIHALGYTNVPVKLDKEV 137
>sp|C4ZDL0|RL9_EUBR3 50S ribosomal protein L9 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplI PE=3 SV=1
Length = 148
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 9 ARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHL 68
A+ +EN ++V+ KLRS E ++ +E+ A Q + ++ + + L
Sbjct: 69 AKVVENTKVVV-------KLRSGEGG----RTFGSISTKEISAAAKEQHGLELDKKKMQL 117
Query: 69 PSPLSAFGEYEVPMRL 84
+ A G YEVP++L
Sbjct: 118 NESIKALGNYEVPVKL 133
>sp|Q6FQT2|TCPD_CANGA T-complex protein 1 subunit delta OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CCT4 PE=3 SV=1
Length = 529
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 30 SRESKDDPIELCSPVT---KEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSK 86
+R S + +E+C PV+ +E+L+ ++ LS I +Y SPL+ + + SK
Sbjct: 129 ARRSVETLLEICHPVSLDDREDLIRAASTSLSSKIVSQYSSFLSPLAVDAVLSITEKDSK 188
Query: 87 TIPLPE 92
T+ L +
Sbjct: 189 TVDLND 194
>sp|B5Y878|RL9_COPPD 50S ribosomal protein L9 OS=Coprothermobacter proteolyticus (strain
ATCC 35245 / DSM 5265 / BT) GN=rplI PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 39 ELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
+L VT ++ + QL + ++ + +++P P+ + G Y+V + L K +
Sbjct: 88 KLYGAVTTRQIAHALKEQLKLEVDSKDINMPDPIKSVGVYDVDIHLFKDV 137
>sp|Q74M23|RL9_LACJO 50S ribosomal protein L9 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=rplI PE=3 SV=1
Length = 151
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
L ++ +++V + Q I ++ L LP P+ + G VP++L K +
Sbjct: 91 LFGSISSKKIVEGLEKQYGIKVDKRKLELPEPIKSLGYTNVPVKLFKGV 139
>sp|Q2YUQ6|RL9_STAAB 50S ribosomal protein L9 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKTQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A9WHR4|RL9_CHLAA 50S ribosomal protein L9 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRL 84
L VT ++ AK+ I I+ + L P+ GEYEVP+ L
Sbjct: 89 LYGSVTNADIAAKLHEVAGIEIDRRKIGLEDPIKRTGEYEVPVEL 133
>sp|P66319|RL9_STAAW 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MW2)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A8YYT8|RL9_STAAT 50S ribosomal protein L9 OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q6GD75|RL9_STAAS 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MSSA476)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q6GKT0|RL9_STAAR 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MRSA252)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|P66318|RL9_STAAN 50S ribosomal protein L9 OS=Staphylococcus aureus (strain N315)
GN=rplI PE=1 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|P66317|RL9_STAAM 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rplI PE=1 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A6QD54|RL9_STAAE 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Newman)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q5HJY1|RL9_STAAC 50S ribosomal protein L9 OS=Staphylococcus aureus (strain COL)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A5INQ6|RL9_STAA9 50S ribosomal protein L9 OS=Staphylococcus aureus (strain JH9)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q2G2T3|RL9_STAA8 50S ribosomal protein L9 OS=Staphylococcus aureus (strain NCTC
8325) GN=rplI PE=3 SV=1
Length = 150
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 62 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 120
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 121 NGIHSLGYTNVPVKLDKEV 139
>sp|Q2FKP1|RL9_STAA3 50S ribosomal protein L9 OS=Staphylococcus aureus (strain USA300)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A6TXG5|RL9_STAA2 50S ribosomal protein L9 OS=Staphylococcus aureus (strain JH1)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A7WWQ0|RL9_STAA1 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 10 RRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLP 69
+ +E+A+ + NIE S ++ + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIEVEVSAKTGEGG-KLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 70 SPLSAFGEYEVPMRLSKTI 88
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9 OS=Solibacter usitatus (strain Ellin6076)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 39 ELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
+L VT +++ + +Q + +I+ + L P+ GE+++P+RL K +
Sbjct: 88 QLFGSVTSKDIADALTAQ-NYNIDRRKIQLDEPIKTLGEFKIPVRLYKDV 136
>sp|B3EKG2|RL9_CHLPB 50S ribosomal protein L9 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplI PE=3 SV=1
Length = 148
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 4 EFEKAARRLENARLVLRRFPN-IEKLRSR--ESKDDPIELCSPVTKEELVAKVASQLSIS 60
E ++ AR++E R+ R + +++L + + +L VT + +A+ S +S
Sbjct: 50 ERKQQARKIEQQRIAAREVADKVQQLNLKVLAKAGESGKLFGTVTSGD-IAEALSNEGVS 108
Query: 61 IEPEYLHLPSPLSAFGEYEVPMRL 84
++ + L SP+ G YEV ++L
Sbjct: 109 VDRRKISLESPIKTLGAYEVGVKL 132
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1
SV=1
Length = 380
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 35 DDPIELCSPVTKEELVAKVASQLSISIEPEY-------LHLPSPLSAFGEYEVPMRLSKT 87
DDP P+TKEE++ +++ S P Y + +P+ A G +P+ +S
Sbjct: 75 DDPRTWGRPITKEEMINDSGAKVPESFLPIYNRVRLMRSKVKTPVDAMGCSMIPVLVSNK 134
Query: 88 IPLPEGKVQ 96
+P KV
Sbjct: 135 CGIPSEKVD 143
>sp|P59667|GCR_RABIT Glucocorticoid receptor OS=Oryctolagus cuniculus GN=NR3C1 PE=2 SV=1
Length = 772
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLSIS 60
+N L+L N+ + + K+D IELC+P V K+E + V Q S S
Sbjct: 259 DNGDLILSNSNNVPLPQVKTEKEDFIELCTPGVIKQEKLGPVYCQASFS 307
>sp|C0QBV1|RL9_DESAH 50S ribosomal protein L9 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rplI PE=3 SV=1
Length = 151
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
L +T ++ + +Q +I +E + LP P+ GEY+VP+RL K +
Sbjct: 89 LYGSITSHDIKDALNAQ-NIILERRTILLPEPIRETGEYKVPIRLYKDV 136
>sp|Q4A166|RL9_STAS1 50S ribosomal protein L9 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplI
PE=3 SV=1
Length = 148
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
L V+ +++ + Q I I+ + LP+ + A G VP++L K +
Sbjct: 89 LFGSVSTKQITQALQQQHDIKIDKRKMDLPNGIHALGYTNVPVKLDKEV 137
>sp|Q72GV5|RL9_THET2 50S ribosomal protein L9 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rplI PE=1 SV=1
Length = 148
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 8 AARRLENARL--VLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEY 65
A R+ E RL +L +R+ E+K + VT +++ ++ Q I+I+P+
Sbjct: 59 AERKAEAERLKEILENLTLTIPVRAGETK-----IYGSVTAKDIAEALSRQHGITIDPKR 113
Query: 66 LHLPSPLSAFGEY--------EVPMRLSKTI 88
L L P+ GEY EVP++L ++
Sbjct: 114 LALEKPIKELGEYVLTYKPHPEVPIQLKVSV 144
>sp|Q4LAK2|RL9_STAHJ 50S ribosomal protein L9 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rplI PE=3 SV=1
Length = 148
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIE------------LCSPVTKEELVAKVASQLSIS 60
+N R R I+ ++ +SK + IE L V+ +++ + +Q I
Sbjct: 50 QNKRAEADRQKEIDDAKALKSKLEEIEVEVSAKTGEGGKLFGSVSTKQIAEALKTQHDIK 109
Query: 61 IEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
I+ + LP + A G VP++L K +
Sbjct: 110 IDKRKMDLPQGIHALGYTNVPVKLDKEV 137
>sp|P79269|GCR_SAGOE Glucocorticoid receptor OS=Saguinus oedipus GN=NR3C1 PE=2 SV=1
Length = 777
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E ++ V Q S
Sbjct: 259 DNGDLVLSSSSNVTLPQVKTEKEDFIELCTPGVIKQEKLSTVYCQAS 305
>sp|O46567|GCR_SAISC Glucocorticoid receptor OS=Saimiri sciureus GN=NR3C1 PE=1 SV=1
Length = 778
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E ++ V Q S
Sbjct: 259 DNGDLVLSSSSNVTLPQVKTEKEDFIELCTPGVIKQEKLSTVYCQAS 305
>sp|O13186|GCR_SAIBB Glucocorticoid receptor OS=Saimiri boliviensis boliviensis GN=NR3C1
PE=2 SV=1
Length = 777
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E ++ V Q S
Sbjct: 259 DNGDLVLSSSSNVTLPQVKTEKEDFIELCTPGVIKQEKLSTVYCQAS 305
>sp|Q6XLJ0|GCR_CALJA Glucocorticoid receptor OS=Callithrix jacchus GN=NR3C1 PE=2 SV=1
Length = 777
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E ++ V Q S
Sbjct: 259 DNGDLVLSSSSNVTLPQVKTEKEDFIELCTPGVIKQEKLSTVYCQAS 305
>sp|P79686|GCR_AOTNA Glucocorticoid receptor OS=Aotus nancymaae GN=NR3C1 PE=2 SV=1
Length = 777
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E ++ V Q S
Sbjct: 259 DNGDLVLSSSSNVTLPQVKTEKEDFIELCTPGVIKQEKLSTVYCQAS 305
>sp|P49208|RK1_PEA 50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum
GN=RPL1 PE=2 SV=1
Length = 208
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 11 RLENARLVLRRFPNIEKLRSRESKDD---PIELCSPVTKEELVAKVASQLSISIEPEY 65
RL++ R+ +RF I+KLR + + D I L K + V V + ++I+P+Y
Sbjct: 49 RLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKY 106
>sp|P27151|RL9_THETH 50S ribosomal protein L9 OS=Thermus thermophilus GN=rplI PE=1 SV=3
Length = 148
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 20/93 (21%)
Query: 4 EFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEP 63
E E+ + LEN L + +R+ E+K + VT +++ ++ Q ++I+P
Sbjct: 64 EAERLKKILENLTLTI-------PVRAGETK-----IYGSVTAKDIAEALSRQHGVTIDP 111
Query: 64 EYLHLPSPLSAFGEY--------EVPMRLSKTI 88
+ L L P+ GEY EVP++L ++
Sbjct: 112 KRLALEKPIKELGEYVLTYKPHPEVPIQLKVSV 144
>sp|Q5SLQ1|RL9_THET8 50S ribosomal protein L9 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=rplI PE=1 SV=1
Length = 148
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 8 AARRLENARL--VLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEY 65
A R+ E RL +L +R+ E+K + VT +++ ++ Q ++I+P+
Sbjct: 59 AERKAEAERLKEILENLTLTIPVRAGETK-----IYGSVTAKDIAEALSRQHGVTIDPKR 113
Query: 66 LHLPSPLSAFGEY--------EVPMRLSKTI 88
L L P+ GEY EVP++L ++
Sbjct: 114 LALEKPIKELGEYVLTYKPHPEVPIQLKVSV 144
>sp|Q65UE9|TILS_MANSM tRNA(Ile)-lysidine synthase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=tilS PE=3 SV=1
Length = 426
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 52 KVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEG 93
K+A+Q+ I + L+L + + + VP+++S+T+PLP+G
Sbjct: 296 KLANQV-IRRYQQKLYLTADFADLTDVAVPLKISQTVPLPDG 336
>sp|Q7NHA5|RL9_GLOVI 50S ribosomal protein L9 OS=Gloeobacter violaceus (strain PCC 7421)
GN=rplI PE=3 SV=1
Length = 153
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 35 DDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTI 88
+D +L VT +++ VAS+ I+I+ + + P+ G Y V R+ + +
Sbjct: 88 EDGNQLFGTVTNQDVAEVVASKAGITIDRREITIEEPIKRTGVYTVKARIFQDV 141
>sp|P04150|GCR_HUMAN Glucocorticoid receptor OS=Homo sapiens GN=NR3C1 PE=1 SV=1
Length = 777
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 13 ENARLVLRRFPNIEKLRSRESKDDPIELCSP-VTKEELVAKVASQLS 58
+N LVL N+ + + K+D IELC+P V K+E + V Q S
Sbjct: 259 DNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTVYCQAS 305
>sp|A9KFL8|RL9_COXBN 50S ribosomal protein L9 OS=Coxiella burnetii (strain Dugway
5J108-111) GN=rplI PE=3 SV=1
Length = 152
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 VAKVASQLSISIEPEYLHLP-SPLSAFGEYEVPMRLSKTIPL 90
+A+ ++ I IE + L P+ GEYEVP+RL + +
Sbjct: 98 IAQAITEAGIEIEKREVDLSQGPIRQVGEYEVPLRLHTDVSV 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,974,891
Number of Sequences: 539616
Number of extensions: 1393641
Number of successful extensions: 4115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4101
Number of HSP's gapped (non-prelim): 65
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)