Query 047111
Match_columns 106
No_of_seqs 119 out of 373
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 99.9 5.6E-23 1.9E-27 150.9 10.9 85 3-105 63-147 (149)
2 1nkw_F 50S ribosomal protein L 99.9 1.3E-22 4.4E-27 148.6 10.0 84 2-105 61-144 (146)
3 3v2d_I 50S ribosomal protein L 99.9 6.4E-23 2.2E-27 150.5 8.1 84 3-105 63-146 (148)
4 3r8s_H 50S ribosomal protein L 99.9 4.3E-22 1.5E-26 146.2 8.0 84 3-105 63-148 (149)
5 3bbo_J Ribosomal protein L9; l 99.8 5.7E-21 1.9E-25 146.2 2.0 85 2-105 111-196 (197)
6 2yzi_A Hypothetical protein PH 56.7 9.8 0.00033 23.9 3.1 41 6-58 92-132 (138)
7 2ag4_A GM2-AP, ganglioside GM2 50.8 13 0.00046 26.3 3.3 60 41-101 74-145 (164)
8 1q1v_A DEK protein; winged-hel 50.1 7.3 0.00025 24.8 1.6 25 41-65 30-55 (70)
9 3kpb_A Uncharacterized protein 46.0 16 0.00054 22.3 2.7 18 38-55 103-120 (122)
10 2d28_C XPSE, type II secretion 45.7 12 0.00042 24.7 2.3 20 42-61 47-66 (149)
11 1jsu_C P27, KIP1, CIP2; comple 45.3 9.8 0.00034 25.2 1.7 19 39-57 9-27 (84)
12 3kxr_A Magnesium transporter, 44.3 23 0.00079 24.9 3.7 46 5-61 135-180 (205)
13 2ef7_A Hypothetical protein ST 43.1 26 0.00088 21.7 3.4 20 38-57 108-127 (133)
14 2j6b_A AFV3-109; sulfolobus, c 41.7 49 0.0017 23.0 4.9 53 40-97 39-91 (109)
15 2p5k_A Arginine repressor; DNA 41.5 12 0.00042 21.2 1.6 33 42-77 18-50 (64)
16 3oco_A Hemolysin-like protein 41.3 27 0.00091 22.6 3.4 20 38-57 126-145 (153)
17 3fio_A A cystathionine beta-sy 39.1 24 0.00081 19.7 2.5 19 38-56 32-50 (70)
18 2p9m_A Hypothetical protein MJ 38.9 37 0.0013 21.1 3.6 19 38-56 119-137 (138)
19 2pfi_A Chloride channel protei 38.2 53 0.0018 20.9 4.4 21 39-59 131-151 (164)
20 3jtf_A Magnesium and cobalt ef 36.8 38 0.0013 21.2 3.5 18 38-55 109-126 (129)
21 2amw_A Hypothetical protein NE 36.7 13 0.00044 22.5 1.1 34 42-76 38-71 (83)
22 3hf7_A Uncharacterized CBS-dom 36.4 33 0.0011 21.7 3.1 18 38-55 110-127 (130)
23 3lqn_A CBS domain protein; csg 36.3 44 0.0015 21.1 3.8 39 6-57 107-145 (150)
24 3i8n_A Uncharacterized protein 35.9 34 0.0012 21.4 3.1 17 38-54 112-128 (130)
25 2ava_A ACP I, acyl carrier pro 35.8 25 0.00085 20.8 2.4 25 42-66 37-61 (82)
26 3ocm_A Putative membrane prote 35.7 46 0.0016 22.5 4.0 20 38-57 140-159 (173)
27 2nyc_A Nuclear protein SNF4; b 35.4 37 0.0013 21.0 3.3 19 38-56 124-142 (144)
28 3lfr_A Putative metal ION tran 35.2 15 0.00051 23.5 1.3 41 6-57 89-129 (136)
29 1yav_A Hypothetical protein BS 34.5 51 0.0017 21.2 3.9 40 5-57 105-144 (159)
30 3lv9_A Putative transporter; C 34.0 40 0.0014 21.5 3.3 18 38-55 128-145 (148)
31 1mzw_B U4/U6 snRNP 60KDA prote 33.9 11 0.00039 20.8 0.5 18 35-53 10-27 (31)
32 3k6e_A CBS domain protein; str 32.9 58 0.002 21.6 4.1 39 6-57 106-144 (156)
33 1dv5_A APO-DCP, APO-D-alanyl c 32.3 21 0.0007 21.6 1.6 35 41-76 36-70 (80)
34 3nqr_A Magnesium and cobalt ef 30.7 35 0.0012 21.2 2.5 17 38-54 109-125 (127)
35 4fry_A Putative signal-transdu 30.5 63 0.0022 20.6 3.8 19 39-57 119-137 (157)
36 2j85_A STIV B116; viral protei 30.4 97 0.0033 21.9 5.0 53 39-96 44-96 (122)
37 2ahq_A Sigma-54, RNA polymeras 30.1 18 0.00062 23.4 1.1 22 44-66 38-59 (76)
38 1o50_A CBS domain-containing p 29.8 49 0.0017 21.3 3.2 19 38-56 136-154 (157)
39 1b4r_A Protein (PKD1_human); P 29.8 86 0.0029 19.9 4.3 31 70-104 49-79 (80)
40 2x4i_A CAG38848, uncharacteriz 29.2 75 0.0026 22.2 4.2 52 40-96 41-92 (114)
41 3ghd_A A cystathionine beta-sy 29.2 56 0.0019 19.4 3.2 23 39-62 33-55 (70)
42 4gqw_A CBS domain-containing p 29.2 57 0.0019 20.3 3.4 19 38-56 126-144 (152)
43 2uv4_A 5'-AMP-activated protei 29.0 41 0.0014 21.6 2.7 18 38-55 134-151 (152)
44 3a1y_A 50S ribosomal protein P 28.9 18 0.00062 22.0 0.9 23 43-66 16-38 (58)
45 1whz_A Hypothetical protein; a 28.6 41 0.0014 20.1 2.5 22 41-63 2-23 (70)
46 1af8_A Actinorhodin polyketide 28.5 30 0.001 20.7 1.9 25 42-66 41-65 (86)
47 2uyg_A 3-dehydroquinate dehydr 28.5 36 0.0012 24.8 2.6 25 39-63 19-46 (149)
48 2lbf_B 60S acidic ribosomal pr 28.4 26 0.00089 22.3 1.6 24 43-67 18-41 (70)
49 1pbj_A Hypothetical protein; s 28.3 44 0.0015 20.2 2.7 19 38-56 105-123 (125)
50 3sl7_A CBS domain-containing p 27.9 67 0.0023 20.7 3.6 19 38-56 139-157 (180)
51 3fhm_A Uncharacterized protein 27.6 59 0.002 21.2 3.3 19 38-56 68-86 (165)
52 2rc3_A CBS domain; in SITU pro 27.4 55 0.0019 20.3 3.0 18 39-56 115-132 (135)
53 2kci_A Putative acyl carrier p 27.3 18 0.00062 23.2 0.7 33 41-76 34-66 (87)
54 3lhh_A CBS domain protein; str 27.2 61 0.0021 21.5 3.4 19 38-56 147-165 (172)
55 2emq_A Hypothetical conserved 26.8 69 0.0024 20.3 3.5 20 38-57 122-141 (157)
56 2lki_A Putative uncharacterize 26.5 18 0.00062 23.7 0.6 34 42-76 60-93 (105)
57 2hc5_A ORF 99, hypothetical pr 26.5 26 0.0009 24.1 1.4 21 48-68 92-112 (117)
58 2lv7_A Calcium-binding protein 26.0 38 0.0013 21.3 2.1 24 42-66 51-74 (100)
59 3gby_A Uncharacterized protein 24.8 40 0.0014 20.9 2.0 19 38-56 109-127 (128)
60 1vq8_S 50S ribosomal protein L 24.7 1.5E+02 0.0051 19.3 5.3 40 44-87 33-72 (85)
61 2o16_A Acetoin utilization pro 24.4 82 0.0028 20.4 3.6 19 38-56 118-136 (160)
62 2lol_A ACP, acyl carrier prote 24.0 21 0.00071 21.1 0.5 25 42-66 39-63 (81)
63 2lbf_A 60S acidic ribosomal pr 23.7 28 0.00095 22.0 1.0 23 43-66 22-44 (69)
64 2yh6_A Lipoprotein 34, BAMC; l 23.6 1.8E+02 0.006 19.7 5.9 49 47-104 18-79 (112)
65 2cnr_A FAS, ACP, acyl carrier 23.5 24 0.00081 20.7 0.7 25 42-66 40-64 (82)
66 2keb_A DNA polymerase subunit 23.3 48 0.0016 22.9 2.3 20 43-63 25-44 (101)
67 2ija_A Arylamine N-acetyltrans 23.2 62 0.0021 24.6 3.2 27 44-70 263-289 (295)
68 4e2i_2 DNA polymerase alpha su 23.0 56 0.0019 21.4 2.5 20 43-63 2-21 (78)
69 2kps_A Uncharacterized protein 22.8 52 0.0018 21.3 2.3 22 66-93 50-71 (98)
70 5nul_A Flavodoxin; electron tr 22.7 60 0.0021 20.7 2.6 26 40-65 4-34 (138)
71 2fu4_A Ferric uptake regulatio 22.6 52 0.0018 19.5 2.2 22 42-64 32-53 (83)
72 1f80_D Acyl carrier protein; t 22.6 31 0.0011 20.2 1.1 25 42-66 40-64 (81)
73 1we6_A Splicing factor, putati 22.4 27 0.00091 22.6 0.8 59 38-96 45-110 (111)
74 2afd_A Protein ASL1650; twiste 22.2 22 0.00075 20.9 0.3 24 43-66 47-70 (88)
75 2kwl_A ACP, acyl carrier prote 21.9 26 0.00087 20.9 0.6 25 42-66 42-66 (84)
76 3k2v_A Putative D-arabinose 5- 21.6 78 0.0027 20.1 3.0 18 38-55 71-88 (149)
77 3j21_T 50S ribosomal protein L 21.5 1.8E+02 0.006 19.0 5.5 40 44-87 34-73 (86)
78 3u5e_X 60S ribosomal protein L 21.0 2E+02 0.0067 20.6 5.2 40 44-87 90-129 (142)
79 3ddj_A CBS domain-containing p 20.9 35 0.0012 24.2 1.3 21 38-58 268-288 (296)
80 2j9l_A Chloride channel protei 20.4 1.1E+02 0.0038 19.8 3.6 20 39-58 149-168 (185)
81 1x3o_A Acyl carrier protein; s 20.1 35 0.0012 19.8 0.9 25 42-66 38-62 (80)
82 3luy_A Probable chorismate mut 20.1 27 0.00093 27.8 0.6 64 23-95 234-306 (329)
83 1j1v_A Chromosomal replication 20.0 53 0.0018 21.2 1.9 19 44-62 1-19 (94)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=99.89 E-value=5.6e-23 Score=150.92 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=77.9
Q ss_pred hHHHHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEE
Q 047111 3 REFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPM 82 (106)
Q Consensus 3 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~I 82 (106)
.+++..+..|++-.+.+.+-...+- +||||||++||+++|++|+|++|||++|.|++|||++|+|+|+|
T Consensus 63 ~~A~~~a~~L~~~~v~i~~k~g~~g-----------klfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~v 131 (149)
T 1div_A 63 ANAKKLKEQLEKLTVTIPAKAGEGG-----------RLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPV 131 (149)
T ss_dssp HHHHHHHHHHTTCCEEEEECBCGGG-----------EEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEEeCCCC-----------cEEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEE
Confidence 5678888999999888888776444 99999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCcEEEEEEEEEEe
Q 047111 83 RLSKTIPLPEGKVQWTFNVKVHG 105 (106)
Q Consensus 83 kLh~~Vp~p~gkV~~~lkV~V~~ 105 (106)
+||++ |+++|+|+|..
T Consensus 132 kLh~~-------V~a~i~v~V~~ 147 (149)
T 1div_A 132 KLHPE-------VTATLKVHVTE 147 (149)
T ss_dssp EEETT-------EEEEEEEEEEE
T ss_pred EECCC-------CEEEEEEEEEe
Confidence 99999 59999999974
No 2
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=99.88 E-value=1.3e-22 Score=148.59 Aligned_cols=84 Identities=18% Similarity=0.357 Sum_probs=76.0
Q ss_pred chHHHHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEE
Q 047111 2 SREFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVP 81 (106)
Q Consensus 2 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~ 81 (106)
..+++..+..|++-.+.+.+-.. +- +||||||++||+++|++| |++|||++|.|++|||++|+|+|+
T Consensus 61 ~~~A~~~a~~L~~~~v~i~~k~g-~g-----------klfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~ 127 (146)
T 1nkw_F 61 KAVAEDLASRLNGVAVELSVRAG-EG-----------KIYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIA 127 (146)
T ss_pred HHHHHHHHHHhcCCEEEEEEEcC-CC-----------ceeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEE
Confidence 35778888899988888877766 44 899999999999999988 999999999999999999999999
Q ss_pred EEecCCCCCCCCcEEEEEEEEEEe
Q 047111 82 MRLSKTIPLPEGKVQWTFNVKVHG 105 (106)
Q Consensus 82 IkLh~~Vp~p~gkV~~~lkV~V~~ 105 (106)
|+||++| +++|+|+|..
T Consensus 128 vkLh~~V-------~a~i~v~V~~ 144 (146)
T 1nkw_F 128 YRAHPEV-------TIPMKLVVHA 144 (146)
T ss_pred EEECCCC-------EEEEEEEEEe
Confidence 9999995 9999999974
No 3
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=99.88 E-value=6.4e-23 Score=150.48 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=72.5
Q ss_pred hHHHHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEE
Q 047111 3 REFEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPM 82 (106)
Q Consensus 3 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~I 82 (106)
.+++..+..|++-.+.+.+-.. +. +||||||++||+++|++|+|++|||++|.|++|||++|+|+|+|
T Consensus 63 ~~A~~~~~~L~~~~v~i~~kag-----------~~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v 130 (148)
T 3v2d_I 63 AEAERLKEILENLTLTIPVRAG-----------ET-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTY 130 (148)
T ss_dssp HHHHHHHHHSSSCCEEEECCBS-----------SS-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEEcC-----------CC-ccccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEE
Confidence 4667777888876665544332 45 99999999999999998889999999999999999999999999
Q ss_pred EecCCCCCCCCcEEEEEEEEEEe
Q 047111 83 RLSKTIPLPEGKVQWTFNVKVHG 105 (106)
Q Consensus 83 kLh~~Vp~p~gkV~~~lkV~V~~ 105 (106)
+||++| +++|+|+|..
T Consensus 131 ~Lh~~V-------~a~i~v~V~~ 146 (148)
T 3v2d_I 131 KPHPEV-------PIQLKVSVVA 146 (148)
T ss_dssp CSBTTB-------CCEEEEEEEC
T ss_pred EECCCc-------EEEEEEEEEe
Confidence 999995 9999999973
No 4
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=99.86 E-value=4.3e-22 Score=146.21 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=74.6
Q ss_pred hHHHHHHHhhhcc-ceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCccccccccCCC-CCccceeEEE
Q 047111 3 REFEKAARRLENA-RLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPS-PLSAFGEYEV 80 (106)
Q Consensus 3 ~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~-pIKslGey~V 80 (106)
.+++..+..|++. .+.+.+-...+ -+||||||++|||++|+++ |++|||++|.|++ |||++|+|+|
T Consensus 63 ~~A~~~~~~L~~~~~v~i~~k~g~~-----------gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v 130 (149)
T 3r8s_H 63 AAANARAEKINALETVTIASKAGDE-----------GKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEV 130 (149)
T ss_dssp HHHHHHHHHHHTTCCEEEEECBCTT-----------SEEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEEEcCCC-----------CceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEE
Confidence 5778888999985 88887766533 3999999999999999876 9999999999987 9999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEEEEEe
Q 047111 81 PMRLSKTIPLPEGKVQWTFNVKVHG 105 (106)
Q Consensus 81 ~IkLh~~Vp~p~gkV~~~lkV~V~~ 105 (106)
+|+||++| +++|+|+|..
T Consensus 131 ~v~Lh~~V-------~a~i~v~V~~ 148 (149)
T 3r8s_H 131 SFQVHSEV-------FAKVIVNVVA 148 (149)
T ss_dssp EECSSSSC-------CCCEEEEEEE
T ss_pred EEEECCCC-------EEEEEEEEEE
Confidence 99999995 9999999974
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.80 E-value=5.7e-21 Score=146.18 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=73.3
Q ss_pred chHHHHHHHhhhcc-ceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEE
Q 047111 2 SREFEKAARRLENA-RLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEV 80 (106)
Q Consensus 2 ~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V 80 (106)
..|++..+..|++- .+.+.+-.. +.-+||||||++||+++|++|+|++|||++|.|++ ||++|+|+|
T Consensus 111 ~~~A~~la~~L~~~~~v~i~~kaG-----------e~GkLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~-IK~lG~y~V 178 (197)
T 3bbo_J 111 KEEAQQLAMVFQTVGAFKVKRKGG-----------KGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE-IRETGEYIA 178 (197)
T ss_dssp THHHHTHHHHSSSCCCCBCCCCBC-----------TTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCC-CSSSSCEEE
T ss_pred HHHHHHHHHHhcCCceEEEEEEeC-----------CCCcEecccCHHHHHHHHHHhhCCeeeeeEEEecc-ccceEEEEE
Confidence 45677888888887 476666554 33499999999999999998999999999999985 999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEEEEEe
Q 047111 81 PMRLSKTIPLPEGKVQWTFNVKVHG 105 (106)
Q Consensus 81 ~IkLh~~Vp~p~gkV~~~lkV~V~~ 105 (106)
+|+||++| +++|+|+|..
T Consensus 179 ~VkLh~eV-------~a~i~V~V~~ 196 (197)
T 3bbo_J 179 ELKLHPDV-------TARVKINVFA 196 (197)
T ss_dssp CCCCBTTB-------CCCEEEBCCC
T ss_pred EEEECCCc-------EEEEEEEEEe
Confidence 99999995 9999999864
No 6
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=56.73 E-value=9.8 Score=23.93 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcC
Q 047111 6 EKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLS 58 (106)
Q Consensus 6 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~g 58 (106)
+.|++.+.....-.- .++... ++-|-||..||.+++.++..
T Consensus 92 ~~~~~~m~~~~~~~l-Vvd~~g-----------~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 92 GEVLRKMAEHRIKHI-LIEEEG-----------KIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp HHHHHHHHHHTCSEE-EEEETT-----------EEEEEEEHHHHHHHHHCCSC
T ss_pred HHHHHHHHhcCCCEE-EECCCC-----------CEEEEEEHHHHHHHHHHHHH
Confidence 456666665554222 555333 89999999999999986643
No 7
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=50.77 E-value=13 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=32.3
Q ss_pred eecCCHHHHHHHHHhhcC--C----ccccccccCCCCCccceeEEEE---EEecC-CCC--CCCCcEEEEEEE
Q 047111 41 CSPVTKEELVAKVASQLS--I----SIEPEYLHLPSPLSAFGEYEVP---MRLSK-TIP--LPEGKVQWTFNV 101 (106)
Q Consensus 41 FGSVTtkdIaeaL~~q~g--I----eIDKkkI~L~~pIKslGey~V~---IkLh~-~Vp--~p~gkV~~~lkV 101 (106)
|||.|-.|+.+.+.+.+. . .+.+-.+...-||+ -|.|.+. ++|+. ++| ||.|+-+.++.+
T Consensus 74 ~GSC~y~DlC~~l~~~~~~~~~~~~~~~~~g~~~~CPi~-~G~Y~l~~~~~~lp~~~lP~~l~~G~Y~v~~~~ 145 (164)
T 2ag4_A 74 IGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFK-EGTYSLPKSEFVVPDLELPSWLTTGNYRIESVL 145 (164)
T ss_dssp BSBCEECCHHHHHHHHSCTTSCCCTTHHHHTCCCSSCBC-SEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEE
T ss_pred cCcccccchhHhhhhhcccccccCcccccCCccccCCCC-CcEEEEeeeEeecCcccccCccCCceEEEEEEE
Confidence 799999999999875420 0 01111122234654 3666654 44544 443 456665555543
No 8
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=50.06 E-value=7.3 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.6
Q ss_pred eecCCHHHHHHHHHhhc-CCcccccc
Q 047111 41 CSPVTKEELVAKVASQL-SISIEPEY 65 (106)
Q Consensus 41 FGSVTtkdIaeaL~~q~-gIeIDKkk 65 (106)
+-.||.++|-.+|.+.+ |+++.-++
T Consensus 30 L~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 30 LEEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GGGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHHHhHHHHHHHHHHHccCCCChHHH
Confidence 56799999999999999 99887665
No 9
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=46.00 E-value=16 Score=22.31 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.5
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
.++-|-||..||.+++.+
T Consensus 103 g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 103 RRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CBEEEEEEHHHHHHHHC-
T ss_pred CCEEEEEeHHHHHHHhhc
Confidence 489999999999999874
No 10
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=45.68 E-value=12 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=17.9
Q ss_pred ecCCHHHHHHHHHhhcCCcc
Q 047111 42 SPVTKEELVAKVASQLSISI 61 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeI 61 (106)
|-||..+++++|++++|+..
T Consensus 47 g~i~e~~l~~~la~~~g~p~ 66 (149)
T 2d28_C 47 GLVSERDHAETCAEVLGLPL 66 (149)
T ss_dssp TCSCHHHHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHHhhCCce
Confidence 78999999999999999653
No 11
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=45.33 E-value=9.8 Score=25.15 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.3
Q ss_pred eeeecCCHHHHHHHHHhhc
Q 047111 39 ELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~ 57 (106)
.|||+|+..++-..+.+++
T Consensus 9 ~LFG~vd~eEl~~~f~~~l 27 (84)
T 1jsu_C 9 NLFGPVDHEELTRDLEKHC 27 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 6999999999877766554
No 12
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=44.27 E-value=23 Score=24.95 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhcCCcc
Q 047111 5 FEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQLSISI 61 (106)
Q Consensus 5 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~gIeI 61 (106)
.+.|++.+....+..--.++.+ .++-|-||..||.+++.++..-++
T Consensus 135 l~~a~~~m~~~~~~~lpVVD~~-----------g~lvGiIT~~Dil~~i~~e~~ed~ 180 (205)
T 3kxr_A 135 LLDAAEAIEHSREIELPVIDDA-----------GELIGRVTLRAATALVREHYEAQL 180 (205)
T ss_dssp HHHHHHHHHTSSCSEEEEECTT-----------SBEEEEEEHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHHHHHHHHH
Confidence 3556677766555433344533 389999999999999987765433
No 13
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=43.07 E-value=26 Score=21.74 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=17.3
Q ss_pred ceeeecCCHHHHHHHHHhhc
Q 047111 38 IELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q~ 57 (106)
-++.|-||..||.+++.++.
T Consensus 108 g~~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 108 GNLKGIISIRDITRAIDDMF 127 (133)
T ss_dssp SCEEEEEEHHHHHHHHHHHC
T ss_pred CeEEEEEEHHHHHHHHHHHH
Confidence 48999999999999998653
No 14
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=41.67 E-value=49 Score=22.96 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=33.4
Q ss_pred eeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCCCCCCCCcEEE
Q 047111 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQW 97 (106)
Q Consensus 40 LFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~Vp~p~gkV~~ 97 (106)
.-.+|..+.=|+.+.+-+|..|..-.+.... +-|.--+-+.|.+- ||||+|-.
T Consensus 39 ~vSaIGH~sTA~lls~Llg~~i~~NRi~i~~---~~GD~alv~~L~~R--l~EG~vl~ 91 (109)
T 2j6b_A 39 FTSAIGHQATAELLSSILGVNVPMNRVQIKV---THGDRILAFMLKQR--LPEGVVVK 91 (109)
T ss_dssp EEECBCSHHHHHHHHHHHTSCCCBCCCCCCB---CTTCEEEEEEESSC--CCTTCCCC
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEe---cCCCEEEEEEeccc--CCCCeEcc
Confidence 3345666666666666666555444333322 22888888888887 79999854
No 15
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=41.47 E-value=12 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=23.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccccCCCCCcccee
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGE 77 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGe 77 (106)
|.+|..||++.|+++ |..|....|- ..++.+|.
T Consensus 18 ~~~t~~el~~~l~~~-~~~vs~~Tv~--R~L~~lg~ 50 (64)
T 2p5k_A 18 EIETQDELVDMLKQD-GYKVTQATVS--RDIKELHL 50 (64)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHH--HHHHHHTC
T ss_pred CCCCHHHHHHHHHHh-CCCcCHHHHH--HHHHHcCC
Confidence 568999999999854 7888876652 23445663
No 16
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=41.33 E-value=27 Score=22.60 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=16.3
Q ss_pred ceeeecCCHHHHHHHHHhhc
Q 047111 38 IELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q~ 57 (106)
-++-|-||..||.+++..+.
T Consensus 126 g~~vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 126 GGTSGIITDKDVYEELFGNL 145 (153)
T ss_dssp SCEEEEECHHHHHHHHHC--
T ss_pred CCEEEEeeHHHHHHHHhccC
Confidence 38999999999999998543
No 17
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=39.07 E-value=24 Score=19.69 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.3
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||..++.+.
T Consensus 32 ~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 32 DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT
T ss_pred CEEEEEEEHHHHHHHHHHc
Confidence 4899999999999998643
No 18
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=38.88 E-value=37 Score=21.07 Aligned_cols=19 Identities=5% Similarity=0.265 Sum_probs=16.3
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++.|-||..||.+++.++
T Consensus 119 g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 119 NKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp SBEEEEEEHHHHHHHHHHC
T ss_pred CeEEEEEEHHHHHHHHHhh
Confidence 3899999999999998753
No 19
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=38.21 E-value=53 Score=20.88 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.4
Q ss_pred eeeecCCHHHHHHHHHhhcCC
Q 047111 39 ELCSPVTKEELVAKVASQLSI 59 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~gI 59 (106)
++-|-||..||..++.++.+-
T Consensus 131 ~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 131 RAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp EEEEEEEHHHHHHHHHHHHSC
T ss_pred EEEEEEEHHHHHHHHHhhhCC
Confidence 899999999999999977643
No 20
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=36.81 E-value=38 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=16.0
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
.++-|-||..||.+++..
T Consensus 109 g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 109 GGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp CCEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 489999999999999874
No 21
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=36.74 E-value=13 Score=22.52 Aligned_cols=34 Identities=6% Similarity=0.293 Sum_probs=25.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccccCCCCCccce
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFG 76 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslG 76 (106)
-|+..-+++.+|++++|++|+-..+.. ..++++|
T Consensus 38 DSl~~~elv~~lE~~fgi~i~~~~l~~-~~~~Tv~ 71 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSVDDDEISA-QTFETLG 71 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCCCTTTCCG-GGSSSHH
T ss_pred CHHHHHHHHHHHHHHhCCeeCHHhhhH-HhcCCHH
Confidence 578888999999999999999877532 2355544
No 22
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=36.37 E-value=33 Score=21.68 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.9
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
-++-|-||..||.+++..
T Consensus 110 g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 110 GDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp SCEEEEEEHHHHHHHHHC
T ss_pred CCEEEEeeHHHHHHHHhC
Confidence 389999999999999874
No 23
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=36.32 E-value=44 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=26.6
Q ss_pred HHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhc
Q 047111 6 EKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 6 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~ 57 (106)
+.|++.+.+... --.++.+ .++-|-||..||.+++.++.
T Consensus 107 ~~a~~~~~~~~~--l~Vvd~~-----------g~~~Giit~~dil~~l~~~~ 145 (150)
T 3lqn_A 107 AKALEMTIDHPF--ICAVNED-----------GYFEGILTRRAILKLLNKKV 145 (150)
T ss_dssp HHHHHHHHHCSE--EEEECTT-----------CBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCE--EEEECCC-----------CcEEEEEEHHHHHHHHHHHh
Confidence 456666665554 1223433 38999999999999998653
No 24
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=35.90 E-value=34 Score=21.37 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=15.2
Q ss_pred ceeeecCCHHHHHHHHH
Q 047111 38 IELCSPVTKEELVAKVA 54 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~ 54 (106)
-++-|-||..||.+++.
T Consensus 112 g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp SCEEEEEEHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHc
Confidence 48999999999999885
No 25
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=35.76 E-value=25 Score=20.83 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=22.2
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-+++.+|++++|++|+-..+
T Consensus 37 DSl~~vel~~~le~~fgi~i~~~~~ 61 (82)
T 2ava_A 37 DSLDTVEIVMNLEEEFGINVDEDKA 61 (82)
T ss_dssp CCSCHHHHHHHHHHHTTCCCCGGGS
T ss_pred CHHHHHHHHHHHHHHHCCccCHHHH
Confidence 4899999999999999999987665
No 26
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=35.73 E-value=46 Score=22.54 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=17.2
Q ss_pred ceeeecCCHHHHHHHHHhhc
Q 047111 38 IELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q~ 57 (106)
.++-|-||..||.+++..+.
T Consensus 140 g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 140 GAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp CCEEEEECHHHHHHHHHCCC
T ss_pred CCEEEEEeHHHHHHHHhCcC
Confidence 48999999999999998543
No 27
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=35.39 E-value=37 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.4
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||..++.++
T Consensus 124 g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 124 GRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp SBEEEEEEHHHHHHHHHHC
T ss_pred CCEEEEEEHHHHHHHHHhc
Confidence 4899999999999998753
No 28
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=35.18 E-value=15 Score=23.45 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=23.6
Q ss_pred HHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhc
Q 047111 6 EKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 6 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~ 57 (106)
+.|++.+....+-.--.++.. .++-|-||..||.+++..+.
T Consensus 89 ~~~~~~m~~~~~~~~~Vvd~~-----------g~lvGiit~~Dil~~l~~~~ 129 (136)
T 3lfr_A 89 NVLLREFRANHNHMAIVIDEY-----------GGVAGLVTIEDVLEQIVGDI 129 (136)
T ss_dssp HHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHTTC----
T ss_pred HHHHHHHHhcCCeEEEEEeCC-----------CCEEEEEEHHHHHHHHhCCC
Confidence 455666655444222233432 38999999999999887543
No 29
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=34.50 E-value=51 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=27.1
Q ss_pred HHHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhc
Q 047111 5 FEKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 5 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~ 57 (106)
.+.|++.+....+ --.++.. .++-|-||..||.+++.++.
T Consensus 105 l~~a~~~m~~~~~--lpVvd~~-----------g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 105 IMKGFGMVINNGF--VCVENDE-----------QVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp HHHHHHHTTTCSE--EEEECTT-----------CBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCE--EEEEeCC-----------CeEEEEEEHHHHHHHHHHHH
Confidence 3556777666554 1223422 38999999999999998664
No 30
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=33.99 E-value=40 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=16.0
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
.++-|-||..||.+++..
T Consensus 128 g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 128 GGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp SSEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 489999999999999874
No 31
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=33.90 E-value=11 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=11.6
Q ss_pred CCCceeeecCCHHHHHHHH
Q 047111 35 DDPIELCSPVTKEELVAKV 53 (106)
Q Consensus 35 ~~~~kLFGSVTtkdIaeaL 53 (106)
.+|+.|||- |..|--+-|
T Consensus 10 gePi~lFGE-~~~~Rr~RL 27 (31)
T 1mzw_B 10 GEPITLFGE-GPAERRERL 27 (31)
T ss_dssp TCCSEETTC-CHHHHHHHH
T ss_pred CCCeeecCC-ChHHHHHHH
Confidence 589999995 444444443
No 32
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=32.85 E-value=58 Score=21.63 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHhhhccceeeEeecchhhcccccCCCCCceeeecCCHHHHHHHHHhhc
Q 047111 6 EKAARRLENARLVLRRFPNIEKLRSRESKDDPIELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 6 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~kLFGSVTtkdIaeaL~~q~ 57 (106)
+.|++.+-+... --.++.. .++-|-||..||.+++....
T Consensus 106 ~~~~~~m~~~~~--lpVVd~~-----------g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 106 TEVLHKLVDESF--LPVVDAE-----------GIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp HHHHHHTTTSSE--EEEECTT-----------SBEEEEEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC--eEEEecC-----------CEEEEEEEHHHHHHHHHHHh
Confidence 456666655443 1234533 38999999999999998653
No 33
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=32.27 E-value=21 Score=21.65 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=26.0
Q ss_pred eecCCHHHHHHHHHhhcCCccccccccCCCCCccce
Q 047111 41 CSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFG 76 (106)
Q Consensus 41 FGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslG 76 (106)
.-|+..-+++-+|.+++|++|+-..+. ++.++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~-~~~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFD-RKEWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCC-TTTTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcC-HHhcCCHH
Confidence 448888888999999999999976653 23455554
No 34
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=30.71 E-value=35 Score=21.23 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.4
Q ss_pred ceeeecCCHHHHHHHHH
Q 047111 38 IELCSPVTKEELVAKVA 54 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~ 54 (106)
.++-|-||..||.+++.
T Consensus 109 g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 109 GGVSGLVTIEDILELIV 125 (127)
T ss_dssp SCEEEEEEHHHHHHHC-
T ss_pred CCEEEEEEHHHHHHHHh
Confidence 48999999999998864
No 35
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=30.50 E-value=63 Score=20.63 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=17.1
Q ss_pred eeeecCCHHHHHHHHHhhc
Q 047111 39 ELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~ 57 (106)
++-|-||..||.+++.++.
T Consensus 119 ~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 119 KLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp EEEEEEEHHHHHHHHHTTC
T ss_pred EEEEEEEHHHHHHHHHHHH
Confidence 8999999999999998654
No 36
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=30.37 E-value=97 Score=21.88 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=34.4
Q ss_pred eeeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCCCCCCCCcEE
Q 047111 39 ELCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQ 96 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~Vp~p~gkV~ 96 (106)
.+-.+|.-++=|+.|.+-+|..|..-.+.+.. +-|.--+-+.|.+- ||||+|.
T Consensus 44 ~~vsaIGH~sTAqlls~Llg~~ip~NRi~i~~---~~GD~alv~~L~~R--l~EG~vl 96 (122)
T 2j85_A 44 TLINAIGHDSTINLVNTLCGTQLQKNRVEVKM---NEGDEALIIMISQR--LEEGKVL 96 (122)
T ss_dssp CEEECCCCHHHHHHHHHHHCCCCCCCCCCCCB---CTTCEEEEEEESSC--CCSSCCC
T ss_pred ceEEeeccHHHHHHHHHHhCCCcCccceeEEe---cCCCEEEEEEeccc--CCCCccC
Confidence 34456666666777776667665544443322 26777788888887 6999974
No 37
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=30.12 E-value=18 Score=23.35 Aligned_cols=22 Identities=5% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHhhcCCccccccc
Q 047111 44 VTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeIDKkkI 66 (106)
.|-..|++.|+++ ||.|-||.|
T Consensus 38 lSD~~I~~~L~~~-Gi~IaRRTV 59 (76)
T 2ahq_A 38 YSDQEIANILKEK-GFKVARRTV 59 (76)
T ss_dssp CCHHHHHHHHTTT-SSCCCHHHH
T ss_pred CCHHHHHHHHHHc-CCCccHHHH
Confidence 6899999999866 999998865
No 38
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=29.83 E-value=49 Score=21.32 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=16.7
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++.++
T Consensus 136 g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 136 GEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp SCEEEEEEHHHHHHHHHHS
T ss_pred CEEEEEEEHHHHHHHHHHh
Confidence 4899999999999998854
No 39
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=29.79 E-value=86 Score=19.94 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=24.2
Q ss_pred CCCccceeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 047111 70 SPLSAFGEYEVPMRLSKTIPLPEGKVQWTFNVKVH 104 (106)
Q Consensus 70 ~pIKslGey~V~IkLh~~Vp~p~gkV~~~lkV~V~ 104 (106)
+.-..-|.|.|.+....+ .|..+++..|.|+
T Consensus 49 HtY~~~G~YtV~Ltv~~g----~~~~~a~~~V~V~ 79 (80)
T 1b4r_A 49 HRYVLPGRYHVTAVLALG----AGSALLGTDVQVE 79 (80)
T ss_dssp EEECSSEEEEEEEEEECS----SCEEEEEEEEEEB
T ss_pred EECCCCcEEEEEEEEEeC----CceEEEEEEEEEE
Confidence 346778999999999865 3677888888775
No 40
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=29.25 E-value=75 Score=22.20 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=28.4
Q ss_pred eeecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCCCCCCCCcEE
Q 047111 40 LCSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIPLPEGKVQ 96 (106)
Q Consensus 40 LFGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~Vp~p~gkV~ 96 (106)
.-.+|..++=|+.+.+-+|..|..-.+.+.. +-|.--+-+.|.+- ||||+|.
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~---~~GD~alv~~L~~R--l~EG~vl 92 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKL---EKEDKLYVVQISQR--LEEGKIL 92 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCB---CTTCEEEEEEEC---------CC
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEe---cCCCEEEEEEeccc--CCCCccC
Confidence 3446777777777777777655544443322 22777788888887 6999884
No 41
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=29.24 E-value=56 Score=19.45 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=17.5
Q ss_pred eeeecCCHHHHHHHHHhhcCCccc
Q 047111 39 ELCSPVTKEELVAKVASQLSISIE 62 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~gIeID 62 (106)
++.|-||-.||..++..+ |.+..
T Consensus 33 ~lvGIvT~~Di~~~~~~~-~~~~~ 55 (70)
T 3ghd_A 33 EILGVVTERDILDKVVAK-GKNPK 55 (70)
T ss_dssp EEEEEEEHHHHHHHTTTT-TCCGG
T ss_pred EEEEEEEHHHHHHHHHhc-CCCcc
Confidence 899999999999877633 54443
No 42
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=29.16 E-value=57 Score=20.28 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=16.2
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++.+.
T Consensus 126 g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 126 GKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp SBEEEEEEHHHHHHHHHC-
T ss_pred CcEEEEEEHHHHHHHHHhc
Confidence 4899999999999999854
No 43
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=29.02 E-value=41 Score=21.56 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=15.1
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
.++-|-||..||.+++.+
T Consensus 134 g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 134 DVVKGIVSLSDILQALVL 151 (152)
T ss_dssp SBEEEEEEHHHHHHHHC-
T ss_pred CeEEEEEEHHHHHHHHHh
Confidence 489999999999998753
No 44
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=28.86 E-value=18 Score=22.02 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHhhcCCccccccc
Q 047111 43 PVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
++|..+|..-|+ ..|+++|.-+.
T Consensus 16 ~~t~~~I~~il~-aaGveve~~~~ 38 (58)
T 3a1y_A 16 EINEENLKAVLQ-AAGVEPEEARI 38 (58)
T ss_dssp CCCHHHHHHHHH-HTTCCCCHHHH
T ss_pred CCCHHHHHHHHH-HcCCCccHHHH
Confidence 789999999888 56999998665
No 45
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=28.60 E-value=41 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.8
Q ss_pred eecCCHHHHHHHHHhhcCCcccc
Q 047111 41 CSPVTKEELVAKVASQLSISIEP 63 (106)
Q Consensus 41 FGSVTtkdIaeaL~~q~gIeIDK 63 (106)
+=+++.+|+...|+ +.|..+.+
T Consensus 2 ~mp~~~~elik~L~-~~G~~~~r 23 (70)
T 1whz_A 2 WMPPRPEEVARKLR-RLGFVERM 23 (70)
T ss_dssp CCCCCHHHHHHHHH-HTTCEEEE
T ss_pred CCCCCHHHHHHHHH-HCCCEEeC
Confidence 44689999999998 56998765
No 46
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=28.49 E-value=30 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.4
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-++..+|++++|++|+-..+
T Consensus 41 DSL~~vel~~~le~~fgi~i~~~~~ 65 (86)
T 1af8_A 41 DSLALMETAARLESRYGVSIPDDVA 65 (86)
T ss_dssp CTTTHHHHHHHHTTTTCSCCCTTTT
T ss_pred CHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4899999999999999999987765
No 47
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=28.47 E-value=36 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=19.9
Q ss_pred eeeecCCHHHHHHHHHh---hcCCcccc
Q 047111 39 ELCSPVTKEELVAKVAS---QLSISIEP 63 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~---q~gIeIDK 63 (106)
..||+.|-+||.+.+++ ++|++++=
T Consensus 19 ~iYG~~tl~di~~~l~~~a~~~g~~v~~ 46 (149)
T 2uyg_A 19 EVYGRTTLEELEALCEAWGAELGLGVVF 46 (149)
T ss_dssp SSSCSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcCCcCCHHHHHHHHHHHHHHcCCEEEE
Confidence 68999999999988765 45777663
No 48
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=28.40 E-value=26 Score=22.29 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHhhcCCcccccccc
Q 047111 43 PVTKEELVAKVASQLSISIEPEYLH 67 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDKkkI~ 67 (106)
++|..+|..-|+ ..|+++|.-++.
T Consensus 18 ~~ta~~I~~il~-aaGvevd~~~~~ 41 (70)
T 2lbf_B 18 SPSAKDIKKILD-SVGIEADDDRLN 41 (70)
T ss_dssp SCCHHHHHHHHH-TTTCCCCTTHHH
T ss_pred CCCHHHHHHHHH-HcCCCccHHHHH
Confidence 689999999888 569999987653
No 49
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=28.29 E-value=44 Score=20.21 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=15.4
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++.++
T Consensus 105 ~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 105 DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp TEEEEEEEHHHHHHHHC--
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 4899999999999988643
No 50
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=27.94 E-value=67 Score=20.73 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=16.6
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++.+.
T Consensus 139 g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 139 GKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp CBEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHHH
Confidence 4899999999999998754
No 51
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=27.61 E-value=59 Score=21.17 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.5
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
-++.|-||..||..++.+.
T Consensus 68 ~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 68 GVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SCEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHhc
Confidence 4899999999999988754
No 52
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=27.38 E-value=55 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.5
Q ss_pred eeeecCCHHHHHHHHHhh
Q 047111 39 ELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q 56 (106)
++-|-||..||.+++.++
T Consensus 115 ~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 115 KVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEEEHHHHHHHHHC-
T ss_pred EEEEEEEHHHHHHHHHhc
Confidence 899999999999998754
No 53
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=27.35 E-value=18 Score=23.16 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=26.7
Q ss_pred eecCCHHHHHHHHHhhcCCccccccccCCCCCccce
Q 047111 41 CSPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFG 76 (106)
Q Consensus 41 FGSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslG 76 (106)
+-|+..-+++-+|.+++||+|+-..+. .++++|
T Consensus 34 ~DSL~~veli~~lE~eF~I~i~~ed~~---~~~Tv~ 66 (87)
T 2kci_A 34 WDSLSHMNLIVSLEVHYKIKFALGELQ---KLKNVG 66 (87)
T ss_dssp CCSTHHHHHHHHHHHHHTCCCCHHHHT---TCCSHH
T ss_pred CChHHHHHHHHHHHHHHCCccCHHHHH---hCCCHH
Confidence 468889999999999999999887763 466655
No 54
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=27.23 E-value=61 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.6
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++..+
T Consensus 147 g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 147 GDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp SCEEEEEEHHHHHHHHHTT
T ss_pred CCEEEEeeHHHHHHHHhCC
Confidence 4899999999999999754
No 55
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=26.78 E-value=69 Score=20.28 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.4
Q ss_pred ceeeecCCHHHHHHHHHhhc
Q 047111 38 IELCSPVTKEELVAKVASQL 57 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q~ 57 (106)
-++.|-||..||..++.++.
T Consensus 122 g~~~Giit~~dil~~~~~~~ 141 (157)
T 2emq_A 122 GYFAGIFTRREVLKQLNKQL 141 (157)
T ss_dssp SSEEEEEEHHHHHHHHHHTT
T ss_pred CeEEEEEEHHHHHHHHHHHh
Confidence 38999999999999998653
No 56
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=26.50 E-value=18 Score=23.72 Aligned_cols=34 Identities=6% Similarity=0.293 Sum_probs=25.8
Q ss_pred ecCCHHHHHHHHHhhcCCccccccccCCCCCccce
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFG 76 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslG 76 (106)
-|+..-+++.+|++++||+|+-..+.. ..++++|
T Consensus 60 DSL~~veLi~~lE~~FgI~I~~eel~~-~~~~Tv~ 93 (105)
T 2lki_A 60 DSMAVVNVITALEEYFDFSVDDDEISA-QTFETLG 93 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCGGGCCG-GGGSBHH
T ss_pred cHHHHHHHHHHHHHHhCCCcCHHHhhH-HhcCCHH
Confidence 578888899999999999999877532 3455554
No 57
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=26.47 E-value=26 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHHhhcCCccccccccC
Q 047111 48 ELVAKVASQLSISIEPEYLHL 68 (106)
Q Consensus 48 dIaeaL~~q~gIeIDKkkI~L 68 (106)
++++.+.+..|+-+|+++++-
T Consensus 92 ~l~~~l~e~~Gll~D~~~~~~ 112 (117)
T 2hc5_A 92 DFYAAMTEFLGLFVDEKKLEH 112 (117)
T ss_dssp HHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHHhhceeecchhhhh
Confidence 456688888899999999754
No 58
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.03 E-value=38 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=19.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
|.||..|+..++. ++|..+....+
T Consensus 51 G~I~~~El~~~l~-~lg~~~~~~ei 74 (100)
T 2lv7_A 51 GFISKQELGTAMR-SLGYMPNEVEL 74 (100)
T ss_dssp SCBCHHHHHHHHH-HHTCCCCTTTH
T ss_pred CcCCHHHHHHHHH-HhCCCCCHHHH
Confidence 8899999999998 57887776554
No 59
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=24.85 E-value=40 Score=20.89 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=16.7
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||.+++.+.
T Consensus 109 g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 109 GRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp CBEEEEEEHHHHHHHHHTT
T ss_pred CCEEEEEEHHHHHHHHHhh
Confidence 4899999999999999853
No 60
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.67 E-value=1.5e+02 Score=19.25 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCC
Q 047111 44 VTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKT 87 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~ 87 (106)
-|..||-+|+++-+|+++.+=+-.... =|.-..-|+|.+|
T Consensus 33 AnK~qIK~ave~lf~VkV~~VNT~~~~----~~~KKA~VtL~~g 72 (85)
T 1vq8_S 33 ASKGEVADAVEEQYDVTVEQVNTQNTM----DGEKKAVVRLSED 72 (85)
T ss_dssp CCHHHHHHHHHHHHCCCEEEEEEEECT----TSSEEEEEEECTT
T ss_pred CCHHHHHHHHHHHhCCCceEEEeeecC----CCceEEEEEECCC
Confidence 467899999999999998876543322 2667777777776
No 61
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=24.42 E-value=82 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.4
Q ss_pred ceeeecCCHHHHHHHHHhh
Q 047111 38 IELCSPVTKEELVAKVASQ 56 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q 56 (106)
.++-|-||..||..++.+.
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 4899999999999987754
No 62
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=24.05 E-value=21 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.0
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-+++.+|++++|++|+-..+
T Consensus 39 DSl~~~el~~~le~~fgi~i~~~~~ 63 (81)
T 2lol_A 39 DSLDTVELMMAIEVEYGIDIPDDEA 63 (81)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGG
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3888999999999999999987766
No 63
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=23.74 E-value=28 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHhhcCCccccccc
Q 047111 43 PVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
++|..+|..-|+ ..|+++|.-++
T Consensus 22 ~~ta~~I~~il~-AaGveve~~~~ 44 (69)
T 2lbf_A 22 TVTEDKINALIK-AAGVNVEPFWP 44 (69)
T ss_dssp CCCHHHHHHHHH-HHTCCCCTHHH
T ss_pred CCCHHHHHHHHH-HcCCCccHHHH
Confidence 789999999888 56999998654
No 64
>2yh6_A Lipoprotein 34, BAMC; lipid binding protein; 1.55A {Escherichia coli}
Probab=23.57 E-value=1.8e+02 Score=19.71 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCcccccccc-------------CCCCCccceeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 047111 47 EELVAKVASQLSISIEPEYLH-------------LPSPLSAFGEYEVPMRLSKTIPLPEGKVQWTFNVKVH 104 (106)
Q Consensus 47 kdIaeaL~~q~gIeIDKkkI~-------------L~~pIKslGey~V~IkLh~~Vp~p~gkV~~~lkV~V~ 104 (106)
..+...|++ .||.|.++.-. .++-..-=|.|.+.++-|.. ++.|+|++.
T Consensus 18 ~~v~~~L~~-~~i~i~~~~~~~~~l~TDWi~W~r~Ded~~~~~RY~I~~~~~g~--------~~~l~V~ll 79 (112)
T 2yh6_A 18 PQVVSVLQA-KNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGY--------QQAVTVKLL 79 (112)
T ss_dssp HHHHHHHHH-TTCCEEEEEGGGTEEEECCEEECCSCGGGCEEEEEEEEEEEETT--------EEEEEEEEE
T ss_pred HHHHHHHHH-cCCceeeccCCCCeEEecccccCccccccccceEEEEEEcccCC--------eEEEEEEEh
Confidence 356677774 59999887653 33322233599999988888 888988875
No 65
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=23.54 E-value=24 Score=20.71 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=21.4
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-+++.++++++|++|+-..+
T Consensus 40 DSl~~~~l~~~le~~fgi~i~~~~~ 64 (82)
T 2cnr_A 40 DSLSMVEVVVAAEERFDVKIPDDDV 64 (82)
T ss_dssp CHHHHHHHHHHHHGGGTBCCCGGGG
T ss_pred ChHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4788889999999999999987664
No 66
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.31 E-value=48 Score=22.88 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHhhcCCcccc
Q 047111 43 PVTKEELVAKVASQLSISIEP 63 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDK 63 (106)
+||..+|++++. .+|++.+-
T Consensus 25 ~Vsae~L~eEfd-efGi~~~d 44 (101)
T 2keb_A 25 SASAQQLAEELQ-IFGLDCEE 44 (101)
T ss_dssp CCCHHHHHHHHH-HHTCBCCH
T ss_pred hccHHHHHHHHH-HcCCCCCH
Confidence 799999999998 68998876
No 67
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=23.21 E-value=62 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhhcCCccccccccCCC
Q 047111 44 VTKEELVAKVASQLSISIEPEYLHLPS 70 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeIDKkkI~L~~ 70 (106)
+|.+|+.++|++.+||.++++-+.-+.
T Consensus 263 ~~~~e~~~~L~~~Fgi~l~~~~~~~~~ 289 (295)
T 2ija_A 263 LSEEEIEKVLKNIFNISLQRKLVPKHG 289 (295)
T ss_dssp CCHHHHHHHHHHHHCCCCSSCCCCCBC
T ss_pred CCHHHHHHHHHHHhCCccChhheeccC
Confidence 578999999999999999977664443
No 68
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=23.04 E-value=56 Score=21.41 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHhhcCCcccc
Q 047111 43 PVTKEELVAKVASQLSISIEP 63 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDK 63 (106)
|||..+|.++|. .+||+.+-
T Consensus 2 ~vs~e~l~~el~-~Fgi~c~d 21 (78)
T 4e2i_2 2 SASAQQLAEELQ-IFGLDCEE 21 (78)
T ss_dssp CCCHHHHHHHHH-HTTCCCCH
T ss_pred ccCHHHHHHHHH-HcCCCCcH
Confidence 589999999998 68987764
No 69
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=22.81 E-value=52 Score=21.34 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=14.9
Q ss_pred ccCCCCCccceeEEEEEEecCCCCCCCC
Q 047111 66 LHLPSPLSAFGEYEVPMRLSKTIPLPEG 93 (106)
Q Consensus 66 I~L~~pIKslGey~V~IkLh~~Vp~p~g 93 (106)
++|.. + .-|+|++++. |.+|.|
T Consensus 50 vDLs~-l-~~G~~~vpv~----v~lP~g 71 (98)
T 2kps_A 50 IDATG-K-AVGEHTVKIY----WQLPAG 71 (98)
T ss_dssp ECCTT-C-CSSCEEEECC----CBCSSC
T ss_pred EECCC-C-CCCeEEEeEE----EECCCC
Confidence 44543 4 5699999986 456776
No 70
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.67 E-value=60 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=16.6
Q ss_pred eeecCC--HHHHHHHHHhhc---CCcccccc
Q 047111 40 LCSPVT--KEELVAKVASQL---SISIEPEY 65 (106)
Q Consensus 40 LFGSVT--tkdIaeaL~~q~---gIeIDKkk 65 (106)
+|+|-| ++.+|+++++.+ |++++--.
T Consensus 4 ~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~ 34 (138)
T 5nul_A 4 VYWSGTGNTEKMAELIAKGIIESGKDVNTIN 34 (138)
T ss_dssp EEECSSSHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCchHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677776 677877776544 66655433
No 71
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.61 E-value=52 Score=19.50 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPE 64 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKk 64 (106)
|.+|..||++.+.++ +..|++.
T Consensus 32 ~~~s~~el~~~l~~~-~~~is~~ 53 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDM-GEEIGLA 53 (83)
T ss_dssp SSBCHHHHHHHHHHT-TCCCCHH
T ss_pred CCCCHHHHHHHHHHh-CCCCCHh
Confidence 478999999999865 5556553
No 72
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=22.61 E-value=31 Score=20.24 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-+++.+|++++|++|+-..+
T Consensus 40 DSl~~vel~~~le~~fgi~i~~~~~ 64 (81)
T 1f80_D 40 DXLDVVELVMELEDEFDMEISDEDA 64 (81)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccCHHHH
Confidence 4888999999999999999987654
No 73
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.43 E-value=27 Score=22.57 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=35.5
Q ss_pred ceeee-cCCHHHHHHHHHhhcCCccccccccCCC-CC---ccceeEEEE--EEecCCCCCCCCcEE
Q 047111 38 IELCS-PVTKEELVAKVASQLSISIEPEYLHLPS-PL---SAFGEYEVP--MRLSKTIPLPEGKVQ 96 (106)
Q Consensus 38 ~kLFG-SVTtkdIaeaL~~q~gIeIDKkkI~L~~-pI---KslGey~V~--IkLh~~Vp~p~gkV~ 96 (106)
+.+-. +-|-.++-+.+.+..|+..++-++.... .+ ++|+.|.+. -.||=-+.+.+||+.
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk~h 110 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGPSS 110 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSCC
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCCCC
Confidence 44445 6788999999999999998887764332 11 344444331 112222455677664
No 74
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=22.21 E-value=22 Score=20.93 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHhhcCCccccccc
Q 047111 43 PVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 43 SVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
|+..-+++..+++++|++++-..+
T Consensus 47 Sl~~~~l~~~l~~~~~~~i~~~~~ 70 (88)
T 2afd_A 47 SSKALILLGRLEKWLGKELNPVLI 70 (88)
T ss_dssp STHHHHHHHHHHHHTTSCCCGGGT
T ss_pred HHHHHHHHHHHHHHHCCCcCHHHH
Confidence 788889999999999998887665
No 75
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=21.91 E-value=26 Score=20.94 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-++..+|++++|++|+-..+
T Consensus 42 DSl~~vel~~~le~~fgi~i~~~~~ 66 (84)
T 2kwl_A 42 DSLDIYELLYLLEEAFDDKIPENEA 66 (84)
T ss_dssp CHHHHHHHHHHHHHHHTCCTTTTGG
T ss_pred CHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4888889999999999999987665
No 76
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=21.58 E-value=78 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=15.8
Q ss_pred ceeeecCCHHHHHHHHHh
Q 047111 38 IELCSPVTKEELVAKVAS 55 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~ 55 (106)
-++.|-||..||..++.+
T Consensus 71 ~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 71 MNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp CBEEEEEEHHHHHHHHCS
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 489999999999998874
No 77
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.52 E-value=1.8e+02 Score=18.96 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCC
Q 047111 44 VTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKT 87 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~ 87 (106)
-|..||-.|+++-+|+++.+=+... .| =|.-..-|+|.+|
T Consensus 34 AnK~qIK~AVe~lf~VkV~~VNTl~-~~---~~~KKA~V~L~~~ 73 (86)
T 3j21_T 34 ATKQDIKRAVEEIFNVKVEKVNTLI-TP---RGEKKAYVKLKPE 73 (86)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEEE-CT---TSCEEEEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCceEEEEeE-cC---CCceEEEEEcCCC
Confidence 3668999999999999888755422 12 3677777888776
No 78
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.05 E-value=2e+02 Score=20.64 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCC
Q 047111 44 VTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKT 87 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~ 87 (106)
-|..||-.|+++-+|+++.+=+..... =|+-..-|+|.+|
T Consensus 90 AnK~qIK~AVEklf~VkV~kVNTl~~~----~g~KKAyV~L~~~ 129 (142)
T 3u5e_X 90 ANKYQIKKAVKELYEVDVLKVNTLVRP----NGTKKAYVRLTAD 129 (142)
T ss_dssp CCHHHHHHHHHHHHSCCEEEEEEEECT----TSCEEEEEEECTT
T ss_pred CCHHHHHHHHHHHhCCceeEEEeeEcC----CCceEEEEEeCCC
Confidence 366899999999999999886542221 2777788888776
No 79
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=20.91 E-value=35 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.9
Q ss_pred ceeeecCCHHHHHHHHHhhcC
Q 047111 38 IELCSPVTKEELVAKVASQLS 58 (106)
Q Consensus 38 ~kLFGSVTtkdIaeaL~~q~g 58 (106)
.++-|-||..||.+++.++..
T Consensus 268 g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 268 NTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp SCEEEEEEHHHHHHHHHHHHH
T ss_pred CeEEEEEcHHHHHHHHHHHhc
Confidence 489999999999999987643
No 80
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=20.36 E-value=1.1e+02 Score=19.80 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.7
Q ss_pred eeeecCCHHHHHHHHHhhcC
Q 047111 39 ELCSPVTKEELVAKVASQLS 58 (106)
Q Consensus 39 kLFGSVTtkdIaeaL~~q~g 58 (106)
++-|-||..||..++.+...
T Consensus 149 ~~vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 149 RLLGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp EEEEEEEHHHHHHHHHHHCC
T ss_pred EEEEEEEHHHHHHHHHHhhc
Confidence 79999999999999987644
No 81
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=20.13 E-value=35 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.5
Q ss_pred ecCCHHHHHHHHHhhcCCccccccc
Q 047111 42 SPVTKEELVAKVASQLSISIEPEYL 66 (106)
Q Consensus 42 GSVTtkdIaeaL~~q~gIeIDKkkI 66 (106)
-|+..-+++.++++++|++|+-..+
T Consensus 38 DSl~~~~l~~~le~~fgi~i~~~~~ 62 (80)
T 1x3o_A 38 DSLDTVELIMGLEDEFGLEISDEEA 62 (80)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4888999999999999999987655
No 82
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=20.12 E-value=27 Score=27.79 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=46.1
Q ss_pred cchhhcccccCCCCCceee------ecCCHHHHHHHHHhhcCCccccccccCCCCCccceeEEEEEEecCCCC---CCCC
Q 047111 23 PNIEKLRSRESKDDPIELC------SPVTKEELVAKVASQLSISIEPEYLHLPSPLSAFGEYEVPMRLSKTIP---LPEG 93 (106)
Q Consensus 23 ~~~~~~~~~~~~~~~~kLF------GSVTtkdIaeaL~~q~gIeIDKkkI~L~~pIKslGey~V~IkLh~~Vp---~p~g 93 (106)
||-+++-||-++..|-.-+ |.+....+.++|++-. + ...-+|-||.|....+..+.|+ ||.|
T Consensus 234 INLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~-----~----~~~~~kiLGsYp~~~~~~~~~~~~~~~~g 304 (329)
T 3luy_A 234 LNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIA-----E----HGDWAKTLAVYPRREHPNPPVTSWMLPQG 304 (329)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHH-----H----TTCEEEEEEEEECCCCCCCCGGGCCCCSS
T ss_pred cceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHH-----H----hCCeEEEEeeccCCCcCCCCccceeccCC
Confidence 5666777888888775432 6677788888887431 1 2345999999999988888776 7777
Q ss_pred cE
Q 047111 94 KV 95 (106)
Q Consensus 94 kV 95 (106)
-|
T Consensus 305 ~~ 306 (329)
T 3luy_A 305 GV 306 (329)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 83
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=20.05 E-value=53 Score=21.23 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHhhcCCccc
Q 047111 44 VTKEELVAKVASQLSISIE 62 (106)
Q Consensus 44 VTtkdIaeaL~~q~gIeID 62 (106)
||..+|.+++++.+|+.++
T Consensus 1 it~~~I~~~Va~~f~i~~~ 19 (94)
T 1j1v_A 1 VTIDNIQKTVAEYYKIKVA 19 (94)
T ss_dssp CCHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHhCCCHH
Confidence 6888999999999887664
Done!