BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047113
(145 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ K+VV WS +IA++ HGQ EAL+ FY + + SD KPN+VTF+SIL
Sbjct: 460 IDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILS 519
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE--------------P 105
ACS++GLIEEGIK+F +MV+++QL N EHYGI VDLL GE + P
Sbjct: 520 ACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGP 579
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+VWGALLGACRIH N+KIGEL A + F LDP + YYT L
Sbjct: 580 HVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLL 619
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F + K+++ WS M+A +A +G E AL F +I + N VT +S L AC
Sbjct: 260 SAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMID-KRIELNRVTVISALRAC 318
Query: 63 SYSGLIEEGIKVFDIMV-HDFQLDLNL 88
+ S +EEG + + V + F+LD+ +
Sbjct: 319 ASSSNLEEGKHIHKLAVNYGFELDITV 345
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA ++F ++VV+W+ +I + +G AL F ++ P+ VT +S
Sbjct: 156 MNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAAS 215
Query: 61 ACS 63
AC+
Sbjct: 216 ACA 218
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 111/160 (69%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F G+I ++VVIWS MIA++ IHG+ EALE F ++ S +PNNVTFLSIL
Sbjct: 459 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILS 518
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GE--------------TEP 105
ACS++GL+EEG+K+FD MVHD+QL + EH+GI VDLL G+ P
Sbjct: 519 ACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGP 578
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+VWGALLGACRIHHN+++GE AK+ F LDP + YY L
Sbjct: 579 HVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILL 618
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F K++V WS MIAS+ IHG R+A++ F ++ + +P++VTF +L
Sbjct: 970 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK-AGVRPSHVTFTCVLS 1028
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F +M +F + L +Y VDLL E +
Sbjct: 1029 ACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDA 1088
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACRIH+N+ + E +A FHLDP + Y+ L
Sbjct: 1089 SIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLL 1128
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +K+V+ WS MIA +A + EAL F+ +I +PN+VT +S L AC+
Sbjct: 260 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE-KRFEPNSVTVVSALQACA 318
Query: 64 YSGLIEEGIKVFDIMV-HDFQLDLNLE 89
S +EEG K+ I V F+LD ++
Sbjct: 319 VSRNLEEGKKIHKIAVWKGFELDFSVS 345
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +++V W+ MI+ +A +G E L F+ ++ S PN V+ LS+L
Sbjct: 869 IEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETL-GFFDLMRSSGVIPNRVSILSVLL 927
Query: 61 ACSYSGLIEEG 71
AC G + +G
Sbjct: 928 ACGNLGALRKG 938
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F NV +W+ + S+ Q E L F+L+I + P+N T L
Sbjct: 52 LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111
Query: 61 ACSYSGLIEEG 71
AC+ ++E G
Sbjct: 112 ACAGLRMLELG 122
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 109/160 (68%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F G+ K+VV WS +IA++ HGQ EAL+ FY + + SD KPNNVTF+SIL
Sbjct: 597 IEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILS 656
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE--------------P 105
ACS+SGLI+EGI +FDIMV+ ++L N EHY I VDLL GE + P
Sbjct: 657 ACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGP 716
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+K+GE+ AK+ F LDP + YY L
Sbjct: 717 DIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILL 756
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + DK+++ WS M+A +A +G E + L+ F ++ KPN VT +S+L
Sbjct: 395 IKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLD-KRIKPNWVTVVSVLR 453
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ +EEG+K+ ++ V+
Sbjct: 454 ACACISNLEEGMKIHELAVN 473
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA ++F +VV+W+ +I+ + G AL F ++ P+ VT +S+
Sbjct: 293 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 352
Query: 61 ACS 63
AC+
Sbjct: 353 ACA 355
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ +VV WS +IA++ HGQ EAL+ + + + SD KPN+VTF+SIL
Sbjct: 459 IDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILS 518
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE--------------P 105
ACS++GLIEEGIK+F +MV+++QL N+EHYGI VDLL GE + P
Sbjct: 519 ACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGP 578
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+VWGALLGACRIH N+KIGEL A + F LDP + YYT L
Sbjct: 579 HVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLL 618
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + K+++ WS M+A +A +G E AL F +I + N VT +S L AC+
Sbjct: 260 AANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMID-KRIELNRVTVISALRACA 318
Query: 64 YSGLIEEGIKVFDIMV-HDFQLDLNL 88
S +EEG ++ + V + F+LD+ +
Sbjct: 319 SSSNLEEGKQIHKLAVNYGFELDITV 344
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F I K+ V+W+ +I + IHG+ +ALE F ++ S+ KPN VTFLSIL
Sbjct: 398 LGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILS 457
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS++GLI EG+++F++MV+D++L NLEHY + VDLL GE + P
Sbjct: 458 ACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTP 517
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ G LLGACRIH N ++ E VAK F L+ + YY
Sbjct: 518 QILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYY 554
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
+A +F + +K+V+ WS +IA + +G EAL F +I DG +PN T L +L
Sbjct: 196 KEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMI--DDGTEPNVATVLCVLQ 253
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
AC+ + +E+G K ++ +
Sbjct: 254 ACAAANDLEQGRKTHELAIRK 274
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A R+F + ++V WS M++ +G +A+E F + SD P+ VT ++++
Sbjct: 93 MTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVS 152
Query: 61 ACS 63
AC+
Sbjct: 153 ACT 155
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F GI K+ V+W+ +I + IHG+ +ALE F ++ S+ KPN VTFLSIL
Sbjct: 398 LGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILS 457
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS++GLI EG+++F +MV+D++L NLEHY + VDLL G+ + P
Sbjct: 458 ACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTP 517
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ G LLGACRIH N ++ E VAK F L+ + YY
Sbjct: 518 QILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYY 554
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A R+F + ++V WS M++ +G +A+E F ++ SD P+ VT ++++
Sbjct: 93 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVS 152
Query: 61 ACS 63
AC+
Sbjct: 153 ACT 155
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
+A +F I +K+V+ WS +IA + +G EAL F ++ DG +PN T L +L A
Sbjct: 197 EAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMM--DDGTEPNVATVLCVLQA 254
Query: 62 CSYSGLIEEGIKVFDIMVH 80
C+ + +E+G K ++ +
Sbjct: 255 CAAAHDLEQGRKTHELAIR 273
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F GI K+ V+W+ +I + IHG+ +ALE F ++ S+ KPN VTFLSIL
Sbjct: 417 LGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILS 476
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS++GLI EG+++F +MV+D++L NLEHY + VDLL G+ + P
Sbjct: 477 ACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTP 536
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ G LLGACRIH N ++ E VAK F L+ + YY
Sbjct: 537 QILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYY 573
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A R+F + ++V WS M++ +G +A+E F ++ SD P+ VT ++++
Sbjct: 112 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVS 171
Query: 61 ACS 63
AC+
Sbjct: 172 ACT 174
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
+A +F I +K+V+ WS +IA + +G EAL F ++ DG +PN T L +L A
Sbjct: 216 EAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMM--DDGTEPNVATVLCVLQA 273
Query: 62 CSYSGLIEEGIKVFDIMVH 80
C+ + +E+G K ++ +
Sbjct: 274 CAAAHDLEQGRKTHELAIR 292
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F + +KNV WS M+A + +HG +EALE FY ++ + KPN +TF+S+L ACS
Sbjct: 263 ARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFY-EMNMAGVKPNYITFVSVLAACS 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL+EEG F M H+F ++ +EHYG VDLL + P VW
Sbjct: 322 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 381
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACR+H NV +GE+ A+ F LDPKN YY L
Sbjct: 382 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLL 418
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F G+ +++V+ W+ +IA +A +G E++E F+ ++ + N VT ++L AC+
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG G +HD + + LE
Sbjct: 221 HSGSQRLG-----KCIHDQVIKMGLE 241
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN--VTFLSI 58
+ DA +F I +N+V W+ MI + + AL F DG +++ SI
Sbjct: 127 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVF-------DGMAERDVISWNSI 179
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLN 87
+ + +G+ E +++F MV D +++ N
Sbjct: 180 IAVYAQNGMSTESMEIFHRMVKDGEINYN 208
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F + +KNV WS M+A + +HG +EALE FY ++ + KPN +TF+S+L ACS
Sbjct: 417 ARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFY-EMNMAGVKPNYITFVSVLAACS 475
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL+EEG F M H+F ++ +EHYG VDLL + P VW
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 535
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACR+H NV +GE+ A+ F LDPKN YY L
Sbjct: 536 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLL 572
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F G+ +++V+ W+ +IA +A +G E++E F+ ++ + N VT ++L AC+
Sbjct: 315 SRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 374
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG G +HD + + LE
Sbjct: 375 HSGSQRLG-----KCIHDQVIKMGLE 395
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++ F + +KNV W+ M+A + +HG+ +EAL+ FY ++ + KPN +TF+S+L ACS
Sbjct: 1407 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR-AGVKPNYITFVSVLAACS 1465
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL+EEG F+ M H + ++ +EHYG VDL + +P VW
Sbjct: 1466 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVW 1525
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACRIH NV +GE+ A+ F LDP N YY L
Sbjct: 1526 GSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 1562
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F + K++ W+ MI S +HG +EAL F + + KP+ +TF+ +L
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV-NVKPDAITFIGVLC 366
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC + ++EG F M + + EHY +L A
Sbjct: 367 ACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A RIF I KNVV W+ MI + + Q EALE F + + PN T +S++
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR-MQAENIFPNEYTMVSLIK 265
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
AC+ G++ G + D + +
Sbjct: 266 ACTEMGILTLGRGIHDYAIKN 286
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++++F + +K+ + W+ MIA +A G EALE F+ ++ + N VT ++L AC+
Sbjct: 1305 SKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 1364
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEH 90
++G + G +HD + ++LE+
Sbjct: 1365 HAGALRAG-----KCIHDQVIKMDLEY 1386
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++ F + +KNV W+ M+A + +HG+ +EAL+ FY ++ + KPN +TF+S+L ACS
Sbjct: 2280 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR-AGVKPNYITFVSVLAACS 2338
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL+EEG F+ M H + ++ +EHYG VDL + +P VW
Sbjct: 2339 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVW 2398
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACRIH NV +GE+ A+ F LDP N YY L
Sbjct: 2399 GSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 2435
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F + K++ W+ MI S +HG +EAL F + + KP+ +TF+ +L
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV-NVKPDAITFIGVLC 366
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC + ++EG F M + + EHY +L A
Sbjct: 367 ACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A RIF I KNVV W+ MI + + Q EALE F + + PN T +S++
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR-MQAENIFPNEYTMVSLIK 265
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
AC+ G++ G + D + +
Sbjct: 266 ACTEMGILTLGRGIHDYAIKN 286
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++++F + +K+ + W+ MIA +A G EALE F+ ++ + N VT ++L AC+
Sbjct: 2178 SKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 2237
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEH 90
++G + G +HD + ++LE+
Sbjct: 2238 HAGALRAG-----KCIHDQVIKMDLEY 2259
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A F G+ +KNV W+ MIA + +HG REAL+ FY +I + KPN +TF+S+L ACS
Sbjct: 348 ARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIW-AGVKPNYITFISVLAACS 406
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY-------------VW 108
++G +EEG + F+ M H++ ++ +EHYG VDLL E Y +W
Sbjct: 407 HAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLW 466
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LL ACRIH +V++ E+ A++ F LDP N YY L
Sbjct: 467 GSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLL 503
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F + +K+VV W+ MIA +A +G +A E F+ ++ GK N VT ++L AC+
Sbjct: 246 SRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACA 305
Query: 64 YSGLIEEGIKVFDIMV 79
+ G + G+ + D ++
Sbjct: 306 HEGALRVGMCLHDQVI 321
>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
Length = 1118
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F G +K++V+W MIA + HG +EA+ A Y + S +PNNVTFLS+L
Sbjct: 922 LDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAV-ALYQRMIASSIQPNNVTFLSVLS 980
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS+SGL++EGI++FD M F + N EH VDLL G
Sbjct: 981 ACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVA 1040
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ W ALL ACR H+N K+ E+ AK+ LDP + YY L
Sbjct: 1041 HTWCALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLL 1080
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F G+ D++V+ WS MI + HG + ++ + +PN+VT +S+L AC+
Sbjct: 725 RLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVK-ARVQPNSVTLVSVLQACALV 783
Query: 66 GLIEEGIKVFDIMV 79
EEG ++ + V
Sbjct: 784 VDAEEGKRLHRVAV 797
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F ++DKNVV W+ MI + +HG +EAL+ FY ++ S P VTFLSIL+AC
Sbjct: 468 EARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYAC 526
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL+ EG ++F M +++ EHY VD+L E P V
Sbjct: 527 SHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC IH N ++ + +K F LDP+N YY L
Sbjct: 587 WGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLL 624
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F ++DKNVV W+ MI + +HG +EAL+ FY ++ S P VTFLSIL+AC
Sbjct: 468 EARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYAC 526
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL+ EG ++F M +++ EHY VD+L E P V
Sbjct: 527 SHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC IH N ++ + +K F LDP+N YY L
Sbjct: 587 WGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLL 624
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K++V W+ MIA + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 608 ARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQ-MRMTGIEPDEVSFISILYACS 666
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYVW 108
+SGL++EG K+F+IM + Q++ NLEHY VDLLA TG + + +W
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIHH+VK+ E VA+ F L+P+N YY L
Sbjct: 727 GALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLL 763
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F + K+V+ W+ MI + + EAL F + + KP+ T IL
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR--ESKPDGTTVACILP 562
Query: 61 ACSYSGLIEEGIKV 74
AC+ +++G ++
Sbjct: 563 ACASLAALDKGREI 576
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + +K VV W+ MI + G A++ F + P+ SIL
Sbjct: 404 LNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFD-EMKSRGVVPDVYAVTSILN 462
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
AC+ +G ++ G +VHD+ + NLE T ++ T+ Y A G+ + H+
Sbjct: 463 ACAINGNLKSG-----KIVHDYIRENNLE----TNSFVSNALTDMY---AKCGSMKDAHD 510
Query: 121 V 121
V
Sbjct: 511 V 511
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F + KNV W+ M+A + +HG +EA++ FY +I C KPN +TF+S+L ACS
Sbjct: 354 ARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI-KPNYITFVSVLAACS 412
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL++EG F+ M +F ++ +EHY VDLL + +P VW
Sbjct: 413 HAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVW 472
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACRIH NV++GE+ A+ F LDP N YY L
Sbjct: 473 GSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLL 509
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F G+ + +V W+ +IA +A +G EA F ++ + + N VT ++L AC+
Sbjct: 252 SRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACA 311
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
+SG ++ G + D +V +L+ NL
Sbjct: 312 HSGALQIGKCIHDQVV-KMELEDNL 335
>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ ++FGG+I+ + V W+ M++S+A+HG+ REA+E F L++ P++VTF +L
Sbjct: 292 LSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVR-EGVVPDHVTFTHLLS 350
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F IM + ++L +EHY VDLL E
Sbjct: 351 ACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNS 410
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL+GACR+ N+++G+ VA+ F LDP + Y +L
Sbjct: 411 GVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITL 450
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A+R+F + +KN V W+ MI+ + +HG EAL F ++H S P VTFLS+L+
Sbjct: 460 ITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLH-SRVSPTGVTFLSVLY 518
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG ++F MVHD + EHY VDLL E P
Sbjct: 519 ACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGP 578
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC IH + + L + F LDP+N YY L
Sbjct: 579 PVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLL 618
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +K++ W+ MI+ +A +G +A+ F + C + +PN VT SIL
Sbjct: 359 IESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKC-EVRPNPVTVTSILS 417
Query: 61 ACSYSGLIEEGIKVFDIM 78
AC+ G + G V D++
Sbjct: 418 ACAQLGALSLGKWVHDLI 435
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ ++N++ WS MI+ + +HG REAL F + + KP+++TF+SIL ACS
Sbjct: 264 ARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK--ASVKPDHITFVSILSACS 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+SGL+ EG + F+ M DF + EHY VD+L E P VW
Sbjct: 322 HSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVW 381
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACRIH NV + E+VA+ F LDP N Y L
Sbjct: 382 GALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R F I +KN++ WS MI + +HG+ +EALE F + S +PN +TF+S+L ACS
Sbjct: 356 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF-TEMKRSGLRPNYITFISVLAACS 414
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL++EG ++ M +F ++ +EHYG VDLL + + +W
Sbjct: 415 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 474
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH NV++ E+ K F LD N YY L
Sbjct: 475 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 511
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F ++++VV W+ MIA +A +G EA+ + +++ G K N V ++L
Sbjct: 251 LEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVL 309
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+++G I+ G ++ + +V
Sbjct: 310 LACAHAGAIQTGKRIHNQVV 329
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA +F + ++NVV W+ MI A HG+ REALE ++ + KP+ VTF S+L
Sbjct: 450 MDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE-YFEQMKKQGIKPDKVTFTSVLS 508
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+EEG K F M D+ + +EHY VDLL + P
Sbjct: 509 ACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGP 568
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRIH +V+ GE A++ LDP +D Y +L
Sbjct: 569 SVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVAL 608
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+F GI D+N+V W+ MI + Q EA + Y + + KP+ VTF+S+L
Sbjct: 147 LTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKC-YETMKLAGCKPDKVTFVSLLN 205
Query: 61 ACSYSGLIEEGIKV 74
A + L++ G KV
Sbjct: 206 AFTNPELLQVGQKV 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++FG + ++VV W+ M+ +A G EA++ F + KP+ +TF S L
Sbjct: 349 LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ-QGIKPDKMTFTSALT 407
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDLNLE 89
+CS ++EG + +VH + LD+ L+
Sbjct: 408 SCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ 437
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ IF + +KNVV W+ +IA +A GQ ALE + ++ PN +T+ SIL
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLE-KMQQAEVAPNKITYTSILQ 306
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
C+ +E G KV ++
Sbjct: 307 GCTTPLALEHGKKVHRYIIQS 327
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +KN V W+ MI+ + +HG +EAL+ FY ++ S KP +TFLS+L+ACS
Sbjct: 287 ARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLS-SSVKPTGLTFLSVLYACS 345
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL++EG +F MVHDF + EHY VD+L E P VW
Sbjct: 346 HAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVW 405
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLGAC IH + + + ++ F LDP+N YY
Sbjct: 406 GALLGACMIHKDTNLAHVASEKLFELDPENIGYY 439
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R F I +KN++ WS MI + +HG+ +EALE F + S +PN +TF+S+L ACS
Sbjct: 210 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF-TEMKRSGLRPNYITFISVLAACS 268
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL++EG ++ M +F ++ +EHYG VDLL + + +W
Sbjct: 269 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 328
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH NV++ E+ K F LD N YY L
Sbjct: 329 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 365
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F ++++VV W+ MIA +A +G EA+ + +++ G K N V ++L
Sbjct: 105 LEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVL 163
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC+++G I+ G + + +V
Sbjct: 164 LACAHAGAIQTGKHIHNQVVR 184
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F G +K++V+W MIA + HG +EA+ A Y + S +PN+VTF+S+L
Sbjct: 453 IDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAV-ALYQRMIASSIQPNSVTFVSVLS 511
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS+SGL++EGI++FD M F + N EH VDLL G
Sbjct: 512 ACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVA 571
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ W ALL ACR H+N K+ ++ AK LDP + YY L
Sbjct: 572 HTWCALLAACREHNNTKMSKVAAKSLLKLDPDHVGYYNLL 611
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F G+ D++V+ WS MI + HG E L + ++ + +PN+VT +S+L AC+
Sbjct: 256 RLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVK-ARVQPNSVTLVSVLQACALV 314
Query: 66 GLIEEGIKVFDIMV 79
EEG +V + V
Sbjct: 315 VDAEEGKRVHRVAV 328
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R F I +KN++ WS MI + +HG+ +EALE F + S +PN +TF+S+L ACS
Sbjct: 355 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF-TEMKRSGLRPNYITFISVLAACS 413
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL++EG ++ M +F ++ +EHYG VDLL + + +W
Sbjct: 414 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 473
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH NV++ E+ K F LD N YY L
Sbjct: 474 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 510
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F ++++VV W+ MIA +A +G EA+ + +++ G K N V ++L
Sbjct: 250 LEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVL 308
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC+++G I+ G ++ + +V
Sbjct: 309 LACAHAGAIQTGKRIHNQVVR 329
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA RIF + ++ VV WS MIA A HG+ +AL F +I+ + KPN VTF+ IL
Sbjct: 296 LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMIN-TGVKPNAVTFIGILH 354
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ G++E+G K F M D+ + +EHYG VDL + E +
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG C++H NVK+ E + LDP ND YY L
Sbjct: 415 VVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVL 454
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 1 MDDAE---RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
M DAE ++F + ++NV W+ MI +A G+ +EA++ F L + + PN VT ++
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF-LEMEDAGLLPNEVTVVA 250
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRI 117
+L AC+ G + G + +HDF N Y + + T G L ACRI
Sbjct: 251 VLVACADMGNLVLGRR-----IHDFS---NRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302
Query: 118 HHNVKIGELVA 128
N++ +V+
Sbjct: 303 FDNMEERTVVS 313
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A RIF + +KNVV W+ MIA + +HGQ EAL+ + ++ + P + TFLS+L+
Sbjct: 465 ISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLD-AHLLPTSATFLSVLY 523
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------- 104
ACS+ GL+EEG KVF M D+ ++ +EH VDLL G+ +
Sbjct: 524 ACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVG 583
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VWGALLGAC +H + + +L ++ F LDP+N YY L
Sbjct: 584 PGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLL 624
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A + F + +K + W+ MI+ +A +G A+ F ++ + +PN +T S L
Sbjct: 364 MESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKL-NVRPNPITISSTLS 422
Query: 61 ACSYSGLIEEG 71
AC+ G + G
Sbjct: 423 ACAQLGALSLG 433
>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
Length = 667
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +K+VV W+ +IA ++IHG R A+ + ++ S GKPN VT ++L+
Sbjct: 463 LDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVE-SGGKPNTVTIATLLY 521
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++G+I+EGIKVF M + L N EHY VD+L E
Sbjct: 522 ACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPST 581
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC +H NV+ GE+ AK F LDP+N Y L
Sbjct: 582 SVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLL 621
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1 MDDAERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
++DA R+F DK+VV W+ MI ++ ++ + EA+ ++ PN VT + +L
Sbjct: 260 LEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLL 319
Query: 60 FACS 63
AC+
Sbjct: 320 SACA 323
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S PN +T +S+L+
Sbjct: 988 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLR-SGILPNKITLVSLLY 1046
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GL+EEG++ F M D+ + +++HY VDLL T E +
Sbjct: 1047 ACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDE 1106
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA LGACR H +V + E A L P+N +Y L
Sbjct: 1107 GLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILL 1146
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S P+ +T S+L+
Sbjct: 312 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLS-SGMLPDKITLASLLY 370
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GL+EEG++ F M D+ + +++HY VDLL T E +
Sbjct: 371 ACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDE 430
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA LGACR H +V + E A L +N +Y L
Sbjct: 431 GLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLL 470
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++++V W+ MI +A G E+L F + P+ V ++++F
Sbjct: 887 IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVVF 945
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
AC+ G + + + D I FQLD+ L
Sbjct: 946 ACAKLGAMHKARTIDDYIQRKKFQLDVIL 974
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++++V W+ MI +A G+ E+L F + P+ V ++++F
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVVPDKVAMVTVVF 269
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
AC+ G + + + D I FQLD+ L
Sbjct: 270 ACAKLGAMHKARIIDDYIQRKKFQLDVIL 298
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ ++ V WS M+ A G F +I C +P+N T ++
Sbjct: 786 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCG-ARPDNYTLPFVIR 844
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC ++ G ++ +V+ F LDL+
Sbjct: 845 ACRDLKNLQMG-RLIHHIVYKFGLDLD 870
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ ++ V WS M+ A G F +I C +P+N T ++
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIR 168
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC ++ G ++ +V+ F LDL+
Sbjct: 169 ACRDLKNLQMG-RLIHHIVYKFGLDLD 194
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +R+F + D++VV W+ +I+S+ +HG R+A++ F ++ + P VTF+S+L
Sbjct: 336 LDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEML-ANGASPTPVTFVSVLG 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG ++F+ M D + +EHY VDLL E P
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLG+CRIH NV++ E ++ F L+PKN Y L
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
+D A +F G+ +NVV WS MIA +A +G+ EAL F ++ D PN+VT +S+L
Sbjct: 233 VDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVL 292
Query: 60 FACSYSGLIEEG 71
AC+ +E+G
Sbjct: 293 QACASLAALEQG 304
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 15/156 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F + KNV W+ M+A + +HG+ +EA+E FY +I S KPN +TF+S+L ACS
Sbjct: 238 ARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIR-SGVKPNYITFVSVLAACS 296
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA--------------TGETEPYVWG 109
++G+++EG F+ M +F ++ +EHY VDLL + + +WG
Sbjct: 297 HAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRAGYLXCYGLIKEMNAKPDFIIWG 356
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LLGACRIH NV++GE+ A+ F LD N YY L
Sbjct: 357 SLLGACRIHKNVELGEISARKLFELDXSNCGYYVLL 392
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +K+VV W+ +IA + IHG R A+ + ++ S GKPN VT ++L+
Sbjct: 463 LDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVE-SGGKPNTVTIATLLY 521
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++G+I+EGIKVF M + L N EHY VD+L E
Sbjct: 522 ACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPST 581
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC +H NV+ GE+ AK F LDP+N Y L
Sbjct: 582 SVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLL 621
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1 MDDAERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
++DA R+F DK+VV W+ MI ++ ++ + EA+ ++ PN VT + +L
Sbjct: 260 LEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLL 319
Query: 60 FACS 63
AC+
Sbjct: 320 SACA 323
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA RIF + ++ VV WS MIA A HG+ +AL F +I+ + KPN VTF+ IL
Sbjct: 296 LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMIN-TGVKPNAVTFIGILH 354
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ G++E+G K F M D+ + +EHYG VDL + E +
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG C++H N+K+ E + LDP ND YY L
Sbjct: 415 VVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVL 454
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 1 MDDAE---RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
M DAE ++F + ++NV W+ MI +A G+ +EA++ F L + + PN VT ++
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF-LEMEDAGLLPNEVTVVA 250
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRI 117
+L AC+ G + G + +HDF N Y + + T G L ACRI
Sbjct: 251 VLVACADMGNLVLGRR-----IHDFS---NRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302
Query: 118 HHNVKIGELVA 128
N++ +V+
Sbjct: 303 FDNMEERTVVS 313
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S PN +T +S+L+
Sbjct: 540 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLR-SGILPNKITLVSLLY 598
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GL+EEG++ F +M D+ + +++HY VDLL T E +
Sbjct: 599 ACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDE 658
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA LGACR H +V + E A L P+N +Y L
Sbjct: 659 GLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILL 698
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S P+ +T S+L+
Sbjct: 310 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLASLLY 368
Query: 61 AC 62
AC
Sbjct: 369 AC 370
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++++V W+ MI +A G+ E+L F + P+ V ++++F
Sbjct: 209 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVVPDKVAMVTVVF 267
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
AC+ G + + + D I FQLD+ L
Sbjct: 268 ACAKLGAMHKARIIDDYIQRKKFQLDVIL 296
>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Brachypodium distachyon]
Length = 697
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F ++K+VV+WS MI+ + +HG ++A+E F +++ S KPN++TF+S+L ACS
Sbjct: 458 AVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVELFQMMV-ASSVKPNSLTFVSVLSACS 516
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------------ATGETEPYVWG 109
+SGL++EG ++F+ M + + N H+ VDLL G + + W
Sbjct: 517 HSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNGRADAHTWC 576
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACR HH+ ++ E+VA LDP + YY L
Sbjct: 577 ALLAACRAHHDTEMSEVVAAKLLKLDPDHAGYYNLL 612
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F G+ +K+VV WS M+ + G EAL A+ ++ KPN VT +S++ ACS
Sbjct: 256 ARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGI-KPNAVTVVSVVQACS 314
Query: 64 YSGLIEEGIKVFDIMV 79
+ IEEG +V DI V
Sbjct: 315 LAPDIEEGRRVHDIAV 330
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S PN +T +S+L+
Sbjct: 384 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLR-SGILPNKITLVSLLY 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GL+EEG++ F +M D+ + +++HY VDLL T E +
Sbjct: 443 ACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDE 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA LGACR H +V + E A L P+N +Y L
Sbjct: 503 GLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILL 542
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +KNV+ WS MIA++ HGQ R+AL+ F +++ S P+ +T S+L+
Sbjct: 182 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLASLLY 240
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
ACS ++ G ++ +V+ F LDL+
Sbjct: 241 ACSDLKNLQMG-RLIHHIVYKFGLDLD 266
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++++V W+ MI +A G+ E+L F + P+ V ++++F
Sbjct: 81 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVVPDKVAMVTVVF 139
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
AC+ G + + + D I FQLD+ L
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVIL 168
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++++V W+ MI +A G E+L F + P+ V ++++F
Sbjct: 283 IEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVVF 341
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
AC+ G + + + D I FQLD+ L
Sbjct: 342 ACAKLGAMHKARTIDDYIQRKKFQLDVIL 370
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +KNV+ WS MIA++ HG+ ++A++ F++++ C+ PN VTF+S+L+
Sbjct: 252 VESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAI-LPNRVTFVSLLY 310
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GLIEEG++ F+ M + + +++HY VDLL T E +
Sbjct: 311 ACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDE 370
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACRIH +++ E A L P+N +Y L
Sbjct: 371 RLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLL 410
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG +EA+ A + + + +P+ ++F+S+L+ACS
Sbjct: 553 ARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAI-ALFNQMRQAGIEPDEISFVSLLYACS 611
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL++EG + F+IM H+ +++ +EHY VD+LA TG E P +W
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIW 671
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL CRIHH+VK+ E VA+ F L+P+N YY
Sbjct: 672 GALLCGCRIHHDVKLAERVAEKVFELEPENTGYY 705
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN+V W+ MI+ ++ HG +EAL Y + PN VTFL+IL ACS
Sbjct: 767 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEAL-ILYEEMPKKGMYPNEVTFLAILSACS 825
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+EEG+++F M D+ ++ EHY VDLL E E W
Sbjct: 826 HTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTW 885
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLGACR+H ++ +G L A+ F LDP+N Y
Sbjct: 886 GALLGACRVHKDMDMGRLAAQRLFELDPQNPGPY 919
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF + ++N W+ MI + +G+ +EAL F + + KP+ + S+L +C
Sbjct: 533 AKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK-QMQLNGIKPDCFSLSSMLSSCV 591
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGI----TVDLLATGETEPYVWGALLGACR--- 116
++G + +H+F + +E GI VD+ A + Y W +
Sbjct: 592 SLSDSQKGRE-----LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDV 646
Query: 117 IHHNVKIGELV-------AKDPF-HLDPKNDAYYTSL 145
I +NV + V AK+ F ++ +N A + S+
Sbjct: 647 ILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSI 683
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA+ +F + +N +W+ ++A +A G ++E+ F ++ SD + + +T ++I+
Sbjct: 663 NDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLE-SDIEYDVLTMVTIVNL 721
Query: 62 CSYSGLIEEGIKVFDIMV 79
CS +E G ++ +++
Sbjct: 722 CSSLPALEHGDQLHSLII 739
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN+V W+ MI+ ++ HG +EAL Y + PN VTFL+IL ACS
Sbjct: 511 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEAL-ILYEEMPKKGMYPNEVTFLAILSACS 569
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+EEG+++F M D+ ++ EHY VDLL E E W
Sbjct: 570 HTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTW 629
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLGACR+H ++ +G L A+ F LDP+N Y
Sbjct: 630 GALLGACRVHKDMDMGRLAAQRLFELDPQNPGPY 663
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF + ++N W+ MI + +G+ +EAL F + + KP+ + S+L +C
Sbjct: 332 AKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK-QMQLNGIKPDCFSLSSMLSSCV 390
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGI----TVDLLATGETEPYVW 108
++G + +H+F + +E GI VD+ A + Y W
Sbjct: 391 SLSDSQKGRE-----LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 434
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 2 DDAE---RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLS 57
DD E ++F + ++N V W+ +I++ A G +AL F + DG +P+ TF +
Sbjct: 224 DDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTT 283
Query: 58 ILFACSYSGLIEEGIKV 74
+L C+ +G ++
Sbjct: 284 LLTLCANQRNDNQGRQI 300
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + +N+ W+ MIA A++G ER+AL F+ + + +PN++TF+ +L AC
Sbjct: 290 DAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFW-KMQLAGVRPNDITFIGLLSAC 348
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG +F MV+ F + EHYG+ VDLL E P +
Sbjct: 349 SHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGL 408
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL GAC+IH V++GE VAK L+P++ + Y L
Sbjct: 409 WGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILL 446
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + +N+ W+ MIA A++G ER+AL F+ + + +PN++TF+ +L AC
Sbjct: 290 DAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFW-KMQLAGVRPNDITFIGLLSAC 348
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG +F MV+ F + EHYG+ VDLL E P +
Sbjct: 349 SHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGL 408
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL GAC+IH V++GE VAK L+P++ + Y L
Sbjct: 409 WGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILL 446
>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
Length = 587
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F ++K+VV+WS MI+ + +HG ++A+E F +++ S KPN++TF+S+L ACS
Sbjct: 348 AVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVELFQMMV-ASSVKPNSLTFVSVLSACS 406
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------------ATGETEPYVWG 109
+SGL++EG ++F+ M + + N H+ VDLL G + + W
Sbjct: 407 HSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNGRADAHTWC 466
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACR HH+ ++ E+VA LDP + YY L
Sbjct: 467 ALLAACRAHHDTEMSEVVAAKLLKLDPDHAGYYNLL 502
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F G+ +K+VV WS M+ + G EAL A+ ++ + KPN VT +S++ ACS
Sbjct: 146 ARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVE-AGIKPNAVTVVSVVQACS 204
Query: 64 YSGLIEEGIKVFDIMV 79
+ IEEG +V DI V
Sbjct: 205 LAPDIEEGRRVHDIAV 220
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 92/162 (56%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
++ A IF GI DK+++ WS +IA + +HG A+ F ++ S KPN +TF SI
Sbjct: 477 LESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQ-SGVKPNEITFTSI 535
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY---------- 106
L ACS++GL++EG+ +F M+ D Q+ L +HY +DLL E Y
Sbjct: 536 LHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRP 595
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG+C IH NV++GE+ AK F L+P N Y L
Sbjct: 596 NHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLL 637
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A+ IF + ++VV W+ M+ + ++G R AL ++ KPN VT S+L
Sbjct: 275 MDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLCQMMQFESVKPNFVTLASVLS 333
Query: 61 ACS 63
AC+
Sbjct: 334 ACA 336
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK---PNNVTFLS 57
M+ A R+F + ++ +V W+ MI + +G +EAL F +I GK P+ T +S
Sbjct: 174 MEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI----GKGIEPDCATVVS 229
Query: 58 ILFACSYSGLIEEGIKV 74
+L CSY +E G +V
Sbjct: 230 VLPVCSYLKELEVGRRV 246
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 92/162 (56%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
++ A IF GI DK+++ WS +IA + +HG A+ F ++ S KPN +TF SI
Sbjct: 477 LESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQ-SGVKPNEITFTSI 535
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY---------- 106
L ACS++GL++EG+ +F M+ D Q+ L +HY +DLL E Y
Sbjct: 536 LHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRP 595
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG+C IH NV++GE+ AK F L+P N Y L
Sbjct: 596 NHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLL 637
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A+ IF + ++VV W+ M+ + ++G R AL ++ KPN VT S+L
Sbjct: 275 MDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLCQMMQFESVKPNFVTLASVLS 333
Query: 61 ACS 63
AC+
Sbjct: 334 ACA 336
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK---PNNVTFLS 57
M+ A R+F + ++ +V W+ MI + +G +EAL F +I GK P+ T +S
Sbjct: 174 MEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI----GKGIEPDCATVVS 229
Query: 58 ILFACSYSGLIEEGIKV 74
+L CSY +E G +V
Sbjct: 230 VLPVCSYLKELEVGRRV 246
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ +R+F + D++VV W+ +I+S+ +HG ++A++ F ++ + P VTF+S+L
Sbjct: 336 LEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML-ANGASPTPVTFVSVLG 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG ++F+ M D + +EHY VDLL E P
Sbjct: 395 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLG+CRIH NV++ E ++ F L+PKN Y L
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
+D A +FGG+ +NVV WS MIA +A +G+ EAL F ++ D PN+VT +S+L
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
AC+ +E+G ++H + L L+ + L T
Sbjct: 293 QACASLAALEQG-----KLIHGYILRRGLDSILPVISALVT 328
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 15/151 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV +S MI A HG+ +EAL F+ ++ ++ KPN VTF+ L
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY- 106
ACS+SGL+++G +VFD M F + +HY VDLL T EP+
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHG 453
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACRIH+N +I E+ A+ F L+P
Sbjct: 454 GVWGALLGACRIHNNPEIAEIAAEHLFELEP 484
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F K++V+W+ +IA +A HG +ALE F+ + S P+ +TF+ +L ACS
Sbjct: 251 AKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIA-PDEITFIGVLSACS 309
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
Y+G ++EG+++F+ M +Q+D EHY VDLL E + VW
Sbjct: 310 YTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVW 369
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACR H N+ + E+ AK L+P N Y L
Sbjct: 370 GALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILL 406
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA F + +++VV W+ MIA +A HG +EALE F + + + KP+++T + +L
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM-MRTTSTKPDDITLVGVLA 492
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M HDF + EHY +DLL E +
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F + ++N V W+ M+A++ EA E F + + C N ++ ++L
Sbjct: 271 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM-MPCR----NVASWNTMLT 325
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G++EE VFD M
Sbjct: 326 GYAQAGMLEEAKAVFDTM 343
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
M +A +F + ++VV W+ M++ +A G EA F D P + T+ ++
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-------DAAPVRDVFTWTAV 261
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 262 VSGYAQNGMLEEARRVFDAM 281
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA F + +++VV W+ MIA +A HG +EALE F + + + KP+++T + +L
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM-MRTTSTKPDDITLVGVLA 492
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M HDF + EHY +DLL E +
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F + ++N V W+ M+A++ EA E F + + C N ++ ++L
Sbjct: 271 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM-MPCR----NVASWNTMLT 325
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G++EE VFD M
Sbjct: 326 GYAQAGMLEEAKAVFDTM 343
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
M +A +F + ++VV W+ M++ +A G EA F D P + T+ ++
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-------DAAPVRDVFTWTAV 261
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 262 VSGYAQNGMLEEARRVFDAM 281
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA F + +++VV W+ MIA +A HG +EALE F + + + KP+++T + +L
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM-MRTTSTKPDDITLVGVLA 492
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M HDF + EHY +DLL E +
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F + ++N V W+ M+A++ EA E F + + C N ++ ++L
Sbjct: 271 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM-MPCR----NVASWNTMLT 325
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G++EE VFD M
Sbjct: 326 GYAQAGMLEEAKAVFDTM 343
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
M +A +F + ++VV W+ M++ +A G EA F D P + T+ ++
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-------DAAPVRDVFTWTAV 261
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 262 VSGYAQNGMLEEARRVFDAM 281
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + KN+ W+ MI A++G+E +AL F+ + + +PN++TF+ +L AC
Sbjct: 289 NAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFW-KMQMAGVRPNDITFIGLLGAC 347
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG +F++MV+ F + EHYG+ VDLL E P +
Sbjct: 348 SHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGL 407
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL GAC+IH V++GE +AK L+P++ + Y L
Sbjct: 408 WGALAGACKIHGEVELGEEIAKKLIELEPRHGSRYILL 445
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA F + +++VV W+ MIA +A HG +EALE F + + + KP+++T + +L
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM-MRTTSTKPDDITLVGVLA 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M HDF + EHY +DLL E +
Sbjct: 368 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 427
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 428 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 467
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F + ++N V W+ M+A++ EA E F + + C N ++ ++L
Sbjct: 146 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM-MPCR----NVASWNTMLT 200
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G++EE VFD M
Sbjct: 201 GYAQAGMLEEAKAVFDTM 218
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
M +A +F + ++VV W+ M++ +A G EA F D P + T+ ++
Sbjct: 84 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-------DAAPVRDVFTWTAV 136
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 137 VSGYAQNGMLEEARRVFDAM 156
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + KNV+ WS MIA++ HGQ ++ALE F +++ S PNN+TF+S+L+
Sbjct: 1333 VDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMML-SSGILPNNITFVSLLY 1391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++GL+E+G+ + +M F + +++H+ VDLL T E +
Sbjct: 1392 ACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDE 1451
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W +LLGACRIH + + E AK L P+N Y
Sbjct: 1452 GLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNY 1488
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 20/162 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI----HCSDGKPNNVTFLSIL 59
+ R+F + +KNV+ W+ +I + +HG+ EALE F ++ + KPN VTF+++
Sbjct: 372 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 431
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
ACS+SGLI EG+ +F M HD ++ +HY VDLL T P
Sbjct: 432 AACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFD 491
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGACRIH NV++GE+ AK+ HL+P ++Y L
Sbjct: 492 KVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLL 533
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ R+F I+ + + +W+ MI+ +A +G + +AL F +I + PN T S++
Sbjct: 266 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 325
Query: 61 ACSYS 65
AC +S
Sbjct: 326 ACVHS 330
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD++ +F +D+++V W+ MI+S + + EAL AF+ ++ + + VT S+L
Sbjct: 164 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL-AFFRLMVLEGVELDGVTIASVLP 222
Query: 61 ACSYSGLIEEGIKV 74
ACS+ ++ G ++
Sbjct: 223 ACSHLERLDVGKEI 236
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 20/162 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI----HCSDGKPNNVTFLSIL 59
+ R+F + +KNV+ W+ +I + +HG+ EALE F ++ + KPN VTF+++
Sbjct: 572 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 631
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
ACS+SGLI EG+ +F M HD ++ +HY VDLL T P
Sbjct: 632 AACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFD 691
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGACRIH NV++GE+ AK+ HL+P ++Y L
Sbjct: 692 KVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLL 733
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ R+F I+ + + +W+ MI+ +A +G + +AL F +I + PN T S++
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408
Query: 61 AC 62
AC
Sbjct: 409 AC 410
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD++ +F +D+++V W+ MI+S + + EAL AF+ ++ + + VT S+L
Sbjct: 247 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL-AFFRLMVLEGVELDGVTIASVLP 305
Query: 61 ACSYSGLIEEGIKV 74
ACS+ ++ G ++
Sbjct: 306 ACSHLERLDVGKEI 319
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+++F + +++VV W+ MI ++ IHG +AL A + + + K +++ F +IL
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDAL-ALFSKMQETGTKLDHIAFTAILT 532
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G++ F M D+ L LEHY VDLL E +
Sbjct: 533 ACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDA 592
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+++GE AK F LDP N YY L
Sbjct: 593 NVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLL 632
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + KNVV W+ +I+ ++ HG EAL A ++ + KP++ +S+L
Sbjct: 373 VNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL-ALFIEMQAQGIKPDSFAIVSVLP 431
Query: 61 ACSYSGLIEEGIKV 74
AC++ +E+G ++
Sbjct: 432 ACAHFLALEQGKQI 445
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++VV W+ +IA ++ +GQ EAL A + + + KPN+ T +S++
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEAL-ALFSEMQVNGIKPNSSTLVSVMP 229
Query: 61 ACSYSGLIEEGIKV 74
C++ +E+G ++
Sbjct: 230 VCAHLLALEQGKQI 243
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + ++V W+ +I ++++ Q EAL AF+ + KPN++T +S+L
Sbjct: 272 VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEAL-AFFNRMQVRGIKPNSITMVSVLP 330
Query: 61 ACSYSGLIEEGIKV 74
AC++ +E+G ++
Sbjct: 331 ACAHLFALEQGQQI 344
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I N V+W I + +G +AL +Y + + P+ + FLS++ AC ++ G
Sbjct: 81 IRNNAVVWKETIIGYVKNGFWNKALRLYYQ-MQRTGINPDKLVFLSVIKACGSQSDLQAG 139
Query: 72 IKVF-DIMVHDFQLDL 86
KV DI+ F+ D+
Sbjct: 140 RKVHEDIIARGFESDV 155
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 348 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 406
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+E+G + F IM +DF ++ LEHY VDLL+ TG ET P +W
Sbjct: 407 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 466
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRI+H++++ E VA+ F L+P+N YY L
Sbjct: 467 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 503
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A R+F + ++NVV W+ MIA + G A+ L +G K + V SIL
Sbjct: 164 LDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAI--ILLQQMEKEGVKLDVVAITSIL 221
Query: 60 FACSYSGLIEEGIKVFD 76
AC+ SG ++ G V D
Sbjct: 222 HACARSGSLDNGKDVHD 238
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F ++ +NV+ W+ +I A HG+ ++ L+ F + KP+ VTF+S+L AC
Sbjct: 701 DALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFER-MKMEGIKPDIVTFVSLLSAC 759
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S++GL+EEG + F M DF + +EHYG VDLL +T P+ +
Sbjct: 760 SHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRI 819
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACRIH NV + E A+ LDP N A Y +L
Sbjct: 820 WGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVAL 857
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA ++F + +++V ++ MI +A H +EAL+ F + +G KP+ VT++++L
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE--EGLKPDKVTYINML 655
Query: 60 FACSYSGLIEEGIKVFDIMVHD 81
AC+ SG +E ++ +++ D
Sbjct: 656 NACANSGSLEWAKEIHSLVLKD 677
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F ++ K+++ W+ MI A G EAL A + + + KPN VT+ SIL
Sbjct: 497 IKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEAL-AVFQDMQQAGLKPNRVTYTSILN 555
Query: 61 ACSYSGLIEEGIKV 74
ACS ++ G ++
Sbjct: 556 ACSSPAALDWGRRI 569
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D ++F +++++++ W+ MI A G EA E Y + PN +T++ +L AC
Sbjct: 398 DCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASE-IYHQMQREGMMPNKITYVILLNAC 456
Query: 63 SYSGLIEEGIKVFDIMVHD-FQLDLNLEHYGITV 95
+ G ++ +V D F D+++++ I++
Sbjct: 457 VNPTALHWGREIHSRVVKDGFMFDISVQNALISM 490
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + KN V W+ MI+ + +HGQ +EAL FY +++ S P VTFL +L+AC
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN-SGITPTPVTFLCVLYAC 531
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YV 107
S++GL++EG ++F+ M+H + + +++HY VD+L EP V
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV 591
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACRIH + + V++ F LDP N Y+ L
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLL 629
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F +K++ W+ MI+ + +G +A+ F + S+ PN VT IL
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR-EMQKSEFSPNPVTITCILS 428
Query: 61 ACSYSGLIEEGIKVFDIM 78
AC+ G + G V D++
Sbjct: 429 ACAQLGALSLGKWVHDLV 446
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++ VV WS MI A+HG+ EAL F + +PN VTF+ +L
Sbjct: 311 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI-EPNGVTFIGLLH 369
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GLI EG + F M D+ + +EHYG VDLL+ +
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H NV++ E K LDP ND YY L
Sbjct: 430 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVL 469
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + ++NV W+ MIA + G+ +EA+ F + + K N VT +++L AC+ G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE-AGVKCNEVTVVAVLAACADLG 274
Query: 67 LIEEGIKVFD 76
++ G+++ +
Sbjct: 275 ALDLGMRIHE 284
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F + ++ VV WS MIA A+HGQ EAL F +I KPN VTF+ +L
Sbjct: 193 LENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV-KPNGVTFIGLLH 251
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GLI+EG + F M D+ + +EHYG VDL + +
Sbjct: 252 ACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNG 311
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VWGALLG C++H N+ + E K LDP ND YY
Sbjct: 312 VVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYV 349
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + +KNV W+ MI+ G+ EA++ F + + +PN VT +S+L
Sbjct: 92 IDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLF-MKLEDEAVRPNEVTVVSVLA 150
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 151 ACADLGDLDLG 161
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++ VV WS MI A+HG+ EAL F + +PN VTF+ +L
Sbjct: 278 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI-EPNGVTFIGLLH 336
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GLI EG + F M D+ + +EHYG VDLL+ +
Sbjct: 337 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 396
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H NV++ E K LDP ND YY L
Sbjct: 397 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVL 436
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 6 RIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
RI G+++K W+ MIA + G+ +EA+ F + + K N VT +++L AC+
Sbjct: 181 RILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEE-AGVKCNEVTVVAVLAACAD 239
Query: 65 SGLIEEGIKVFD 76
G ++ G+++ +
Sbjct: 240 LGALDLGMRIHE 251
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+E+G + F IM +DF ++ LEHY VDLL+ TG ET P +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 604
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRI+H++++ E VA+ F L+P+N YY L
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A R+F + ++NVV W+ MIA + G A+ L +G K + V SIL
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAI--ILLQQMEKEGVKLDVVAITSIL 359
Query: 60 FACSYSGLIEEGIKVFD 76
AC+ SG ++ G V D
Sbjct: 360 HACARSGSLDNGKDVHD 376
>gi|357143150|ref|XP_003572820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 412
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE+IF + K++V W+ MI S+ +HG R AL FY +I PN +TFLS++
Sbjct: 169 IDSAEQIFKQMNAKDLVSWNSMINSYGVHGDGRSALRYFYQLIDAGTHTPNAITFLSVIS 228
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGLI EG F+ M D ++ +++HY VDL E E +
Sbjct: 229 ACSHSGLISEGYMCFERMRKDHGIEPSMDHYSCVVDLFGRSGRFTEAEEFIRDMPVPPNS 288
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LL AC++H NV + E AK+ L+P++D + SL
Sbjct: 289 SIWGPLLAACQLHGNVDLAEKAAKELSVLEPESDIWRVSL 328
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK----PNNVTFL 56
+D A +F G+ K++V W+ MI+ A EALE F +H G P+ VT L
Sbjct: 64 VDSAHLVFKGMQFKDIVSWNTMISCLAKSDYVNEALELFS-TLHGGGGGGGLVPDFVTVL 122
Query: 57 SILFACSYSGLIEEG 71
S++ ACS +GL+ +G
Sbjct: 123 SVVQACSSAGLLLQG 137
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++ VV WS MI A+HG+ EAL F + +PN VTF+ +L
Sbjct: 311 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI-EPNGVTFIGLLH 369
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GLI EG + F M D+ + +EHYG VDLL+ +
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H NV++ E K LDP ND YY L
Sbjct: 430 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVL 469
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + ++NV W+ MIA + G+ +EA+ F + + K N VT +++L AC+ G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE-AGVKCNEVTVVAVLAACADLG 274
Query: 67 LIEEGIKVFD 76
++ G+++ +
Sbjct: 275 ALDLGMRIHE 284
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+AE+IF + KNV W+ +I+ +A++G+ AL+AF +I KP+ VTFL +L
Sbjct: 294 VDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIM-EKFKPDEVTFLGVLC 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + GL+ EG F M +F L +EHYG VDLL + +P
Sbjct: 353 ACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDP 412
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRIH N+++GE K L+P N Y L
Sbjct: 413 IIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLL 452
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F I D+N+V W+ +I + + R+ ++ F + + KP VT + +L
Sbjct: 193 VSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFR-EMQIAGAKPVEVTMVGVLL 251
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC++ G + +G + D + H+ +L LN+
Sbjct: 252 ACAHLGALNQGRWIDDYIDHN-RLRLNV 278
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFAC 62
A + F I +KN++ WS MI + +HG +EAL+ F + C G+ PN +TF+S+L AC
Sbjct: 351 ARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEM--CRSGQNPNYITFISVLAAC 408
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL+++G ++ M F ++ +EHYG VDLL + + +
Sbjct: 409 SHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAI 468
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACRIH NV++ E+ AK F LD N YY L
Sbjct: 469 WGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLL 506
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A ++F ++K+VV W+ MIA +A +G +AL + +++ S K N VT +IL AC
Sbjct: 249 ARKVFD-TMEKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLAC 307
Query: 63 SYSGLIEEGIKVFDIMVH 80
+++G I+ G + + +V
Sbjct: 308 AHAGTIQTGKCIHNQVVR 325
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG +EA+ A + + + + + ++F+S+L+ACS
Sbjct: 553 AHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI-ALFNQMRQAGIEADEISFVSLLYACS 611
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEPYVW 108
+SGL++EG + F+IM H+ +++ +EHY VD+LA TG+ + +W
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL CRIHH+VK+ E VA+ F L+P+N YY
Sbjct: 672 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 705
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A R+F I KN+ W+ +I A+HG A++ F +IHC DG KPN VTF+ +L AC
Sbjct: 339 ARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNAC 398
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GL+E+G F++M D+ ++ +EH+G +DLL E + V
Sbjct: 399 THGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVV 458
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL AC+IH + E K +DPKN Y L
Sbjct: 459 WGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIML 496
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS--------DGKPNNV 53
D A +F + +++V W+ +IA A +G EA+ F ++ + + KPN
Sbjct: 227 DSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKT 286
Query: 54 TFLSILFACSYSGLIEEG 71
T S L AC ++G++ G
Sbjct: 287 TLGSALSACGHTGMLHLG 304
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 16/153 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F ID+++ W+ M+A + +HG +AL+ F + KPN++TF+ L ACS
Sbjct: 387 AQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLF-TEMETLGVKPNDITFIGALHACS 445
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+ EG +F+ M+HDF L +EHYG VDLL E+ P +W
Sbjct: 446 HAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIW 505
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
GA+L AC+IH N +GEL A++ L+P+N Y
Sbjct: 506 GAMLAACKIHKNSNMGELAARELLALEPQNCGY 538
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G +++V W+ MIA + I + E E ++ + + PN++T LS++ +C + G
Sbjct: 188 LFYGFSQRSIVSWTAMIAGY-IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVG 246
Query: 67 LIEEGIKVFD-IMVHDFQLDLNL 88
++ G ++ I+ + F + L L
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLAL 269
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 91/154 (59%), Gaps = 17/154 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF ++ ++VV W+ MI+ + +HG+ +AL+ F + KPN++TFL+IL AC
Sbjct: 581 ARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFS-EMEAGSIKPNSLTFLAILSACC 639
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV-----------W 108
++GL++EG K+F I + ++L+ NL+HY VDLL E E V W
Sbjct: 640 HAGLVDEGRKLF-IRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVW 698
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LL AC++H N ++G VAK F DP+ND YY
Sbjct: 699 GTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYY 732
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
++VV W+ +I+S++ G+ +AL + Y + D KPN+ T ++++ AC+ +E G
Sbjct: 490 RDVVTWNALISSYSHVGRSNDAL-SLYGQMLTEDVKPNSSTLITVISACANLAALEHG-- 546
Query: 74 VFDIMVHDFQLDLNLE 89
++H + ++ LE
Sbjct: 547 ---ELLHSYVKNMGLE 559
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA +F + +K+VV W+G+I ++ G REA+E F + S +P+ V L +
Sbjct: 273 EDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQ-EMEQSGLQPDEV-----LVS 326
Query: 62 CSYSGL 67
C SGL
Sbjct: 327 CVLSGL 332
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F + ++NVV W+ MIA + +HG REA++ F+L + C PN+VTF+++L
Sbjct: 257 VDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHL-MRCEGPPPNHVTFVAVLS 315
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETE 104
AC+++GL+ EG F M + L +EHY VD+ GE
Sbjct: 316 ACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPG 375
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VW A+LGAC++H N +G VA+ L+P+N +Y+ L
Sbjct: 376 PEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLL 416
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I D++VV W+ MI+ + +G + Y + + P+++TF++ L AC+
Sbjct: 159 ARKLFDAIRDRSVVAWNAMISGYEQNGLAERGI-GVYKEMQAAKAVPDSMTFVATLSACA 217
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
+G ++ G +V +V + ++D+++
Sbjct: 218 QAGALDLGREVERRVVSE-RMDISV 241
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG +EA+ A + + + + + ++F+S+L+ACS
Sbjct: 402 AHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI-ALFNQMRQAGIEADEISFVSLLYACS 460
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEPYVW 108
+SGL++EG + F+IM H+ +++ +EHY VD+LA TG+ + +W
Sbjct: 461 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 520
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL CRIHH+VK+ E VA+ F L+P+N YY
Sbjct: 521 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 554
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F + KN+ W+ +I A+HG EAL A + + KPN VTF+S+L
Sbjct: 254 LDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEAL-AMFSRMQREKIKPNGVTFISVLG 312
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+EEG K F M DF + +EHYG VDLL E
Sbjct: 313 ACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNS 372
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLG C++H N+KI ++ + L+P N YYT L
Sbjct: 373 VIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLL 412
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 95/154 (61%), Gaps = 17/154 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +++++VV W+ MI+ + +HG+ +AL+ F ++ + KPN++TFL+IL AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMER-GNVKPNSLTFLAILSACC 633
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+++G ++F M ++ L+ NL+HY VDLL E + +W
Sbjct: 634 HAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LLGAC++H N ++G VAK F DP+ND YY
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYY 726
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +IFG + K+VV WS +I+S++ G ++AL Y + KPN+ T +S++ +
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL-LLYDQMLTEGVKPNSATLVSVISS 530
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C+ +E G ++ V D L+ +L VD+
Sbjct: 531 CANLAALEHG-ELIHSHVKDVGLECDLSICTALVDM 565
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS-DG--KPNNVTFLSIL 59
DA R+F + +++VV W+ +I+ +GQ E L ++ + DG +PN+ T S L
Sbjct: 163 DAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGL 222
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT------------------G 101
AC G + G +H F + + H V L +
Sbjct: 223 EACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 102 ETEPYVWGALLGA-CRIHHNVKIGEL 126
E + W +L+GA CR H K EL
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVEL 303
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 95/154 (61%), Gaps = 17/154 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +++++VV W+ MI+ + +HG+ +AL+ F ++ + KPN++TFL+IL AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMER-GNVKPNSLTFLAILSACC 633
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+++G ++F M ++ L+ NL+HY VDLL E + +W
Sbjct: 634 HAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LLGAC++H N ++G VAK F DP+ND YY
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYY 726
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +IFG + K+VV WS +I+S++ G ++AL Y + KPN+ T +S++ +
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL-LLYDQMLTEGVKPNSATLVSVISS 530
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C+ +E G ++ V D L+ +L VD+
Sbjct: 531 CANLAALEHG-ELIHSHVKDVGLECDLSICTALVDM 565
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS-DG--KPNNVTFLSIL 59
DA R+F + +++VV W+ +I+ +GQ E L ++ + DG +PN+ T S L
Sbjct: 163 DAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGL 222
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT------------------G 101
AC G + G +H F + + H V L +
Sbjct: 223 EACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 102 ETEPYVWGALLGA-CRIHHNVKIGEL 126
E + W +L+GA CR H K EL
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVEL 303
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 95/154 (61%), Gaps = 17/154 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +++++VV W+ MI+ + +HG+ +AL+ F ++ + KPN++TFL+IL AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMER-GNVKPNSLTFLAILSACC 633
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+++G ++F M ++ L+ NL+HY VDLL E + +W
Sbjct: 634 HAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LLGAC++H N ++G VAK F DP+ND YY
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYY 726
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +IFG + K+VV WS +I+S++ G ++AL Y + KPN+ T +S++ +
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL-LLYDQMLTEGVKPNSATLVSVISS 530
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C+ +E G ++ V D L+ +L VD+
Sbjct: 531 CANLAALEHG-ELIHSHVKDVGLECDLSICTALVDM 565
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS-DG--KPNNVTFLSIL 59
DA R+F + +++VV W+ +I+ +GQ E L ++ + DG +PN+ T S L
Sbjct: 163 DAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGL 222
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT------------------G 101
AC G + G +H F + + H V L +
Sbjct: 223 EACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 102 ETEPYVWGALLGA-CRIHHNVKIGEL 126
E + W +L+GA CR H K EL
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVEL 303
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F I K++++W+ MIA + +HG +EA+ F + + +P +F SIL+AC+
Sbjct: 514 AQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFE-KMRVAGIEPEESSFTSILYACT 572
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+SGL++EG K+FD M + ++ LEHY VDLL ET P +W
Sbjct: 573 HSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIW 632
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIHH+V++ E VA+ F L+P+N YY L
Sbjct: 633 GALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLL 669
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A IF + KN+V W+ MI ++ + EAL+ F + KP++VT +L
Sbjct: 411 MEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQ--KQLKPDDVTMACVLP 468
Query: 61 ACSYSGLIEEGIKV 74
AC+ +E+G ++
Sbjct: 469 ACAGLAALEKGREI 482
>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
Length = 1251
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF +K +V W+ MIA +A++G EA+E F +I D KPN++TFL++L
Sbjct: 1005 IDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDL-DYKPNHITFLAVLQ 1063
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
AC++SG +E+G + F IM + + L+HY VDLL + + +
Sbjct: 1064 ACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDA 1123
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC+IH NVKI E A F+L+P+ A Y +
Sbjct: 1124 GIWGALLSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEM 1163
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
M+ AE IF G+I +++V W+ +I+ ++ HGQ +ALEAF +++ S+G P+ TF+ +L
Sbjct: 405 MEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMML--SEGIMPDEATFIGVL 462
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY 106
ACS+ GL+EEG K FD M + ++ ++EHY VD+L PY
Sbjct: 463 SACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPY 522
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LGAC++H NV GE AK F ++P D+ Y L
Sbjct: 523 SLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILL 563
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ AER+F G+ +KN V W+ ++ +A G ++ L+ F + C + K + T ++L
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKEC-ETKFSKFTLSTVLK 59
Query: 61 ACSYSGLIEEG 71
C+ +G + EG
Sbjct: 60 GCANTGSLREG 70
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F I + +VV WS MI G +EA E F+L+ +PN T S++
Sbjct: 104 DALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTA 162
Query: 63 SYSGLIEEGIKV 74
+ G + G +
Sbjct: 163 TNMGDLRYGQSI 174
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA F ++++++ W+ +I+ +A Q +A++ ++ + KPN T S L
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVK-YFRQMQREGIKPNEYTLASCLS 362
Query: 61 ACSYSGLIEEGIKVFDIMV 79
CS+ +E G ++ + V
Sbjct: 363 GCSHMATLENGRQLHAVAV 381
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F + KN+ W+ +I A+HG EAL A + + KPN VTF+S+L
Sbjct: 224 LDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEAL-AMFSRMQREKIKPNGVTFISVLG 282
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+EEG K F M DF + +EHYG VDLL E
Sbjct: 283 ACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNS 342
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLG C++H N+KI ++ + L+P N YYT L
Sbjct: 343 VIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLL 382
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE +F + +++++ W+ MIA ++ + Q REAL F + + P+ VT +I+
Sbjct: 123 VESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFN-EMQTNGIDPDEVTMATIIS 181
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDL 86
AC++ G ++ G ++ M F LD+
Sbjct: 182 ACAHLGALDLGKEIHLYAMEMGFDLDV 208
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MI+ + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 486 ARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+E+G + F IM +DF ++ LEHY VDLL+ TG ET P +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRI+H++++ E VA+ F L+P+N YY L
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NVV W+ MIA + G+ A+ + K + V SIL
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQ-QMEKEGVKLDVVATTSILH 360
Query: 61 ACSYSGLIEEGIKVFD 76
AC+ SG ++ G V D
Sbjct: 361 ACARSGSLDNGKDVHD 376
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+++F G+ K++ W+ MI+ A+HG ALE F + +P+++TF+ +L
Sbjct: 417 IEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFR-QMRDEGFEPDDITFVGVLS 475
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E G + F MV D+ + L+HYG +DLL E +P
Sbjct: 476 ACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDG 535
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACR+H NV++GE AK F L+P+N Y L
Sbjct: 536 AIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F I ++ V W+ MIA +A G+ EAL AF+ + ++ PN T +++L
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL-AFFQEMKRANVAPNESTMVTVLS 272
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ SG +E G V + D L NL +D+
Sbjct: 273 ACAQSGSLELGNWVRS-WIEDHGLGSNLRLVNALIDM 308
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F GI +K+++ W+ MI ++ +EAL A + + S+ +PN+VTF+SIL
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL-ALFRKMQQSNVEPNDVTFVSILP 373
Query: 61 ACSYSGLIEEG 71
AC+Y G ++ G
Sbjct: 374 ACAYLGALDLG 384
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F I N IW+ MI +++ A++ FY+ + +PN+ TF +L +C+ G
Sbjct: 88 LFESIEQPNQFIWNTMIRGNSLSSSPVGAID-FYVRMLLCGVEPNSYTFPFLLKSCAKVG 146
Query: 67 LIEEGIKVFDIMVHDFQLDLNLE 89
+EG + +H L L LE
Sbjct: 147 ATQEGKQ-----IHGHVLKLGLE 164
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + KNV W+ MIA +A HG+ +EALE FY + KP+ +TF+ L
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQ-MQQEGVKPDWITFVGALS 724
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GLIEEG+ F M +F ++ +EHYG VDL E +
Sbjct: 725 ACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS 783
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC++H NV++ E A+ LDP ++ + L
Sbjct: 784 RVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVIL 823
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + +NVV W+ MIA A HG+ EA F +I S +PN VTF+SIL
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE-SGIEPNRVTFMSILG 421
Query: 61 ACSYSGLIEEGIKVFD 76
ACS ++ G ++ D
Sbjct: 422 ACSSPSALKRGQQIQD 437
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA R+F I +NVV W+ MI ++ H Q AL F ++ +G KPN+ TF SIL
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL--KEGIKPNSSTFTSIL 521
Query: 60 FACSYSGLIEEGIKV-FDIMVHDFQLDLNLEH 90
C S +E G V F IM + DL++ +
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + +++V W+ MI A HG+ ++A F + +P+ V F+S+L AC
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRAC 322
Query: 63 SYSGLIEEGIKV 74
++ +E+G KV
Sbjct: 323 NHPEALEQGKKV 334
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + +++V W+ +IA HG+ + A + F ++ S KP+ +TF +L AC+
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-SGIKPDKITFTGLLNACA 626
Query: 64 YSGLIEEGIKV 74
+ EG ++
Sbjct: 627 SPEALTEGRRL 637
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++IF + +K+V W+ ++ + HG EA + ++ S KP+ TF+S+L AC+
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACA 222
Query: 64 YSGLIEEGIKVFDIMV 79
+ +++G +++++++
Sbjct: 223 DARNVDKGRELYNLIL 238
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD R+F G+ K++ W+ +I +AI+G+ EA+E+F +I CS P+ +TF+++L
Sbjct: 330 MDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMI-CSGFSPDGITFIALLS 388
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
CS++GL ++G ++F++M D+ + +EHY VD+L + P+
Sbjct: 389 GCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTG 448
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR+H NV + E VAK F L+P N Y L
Sbjct: 449 SIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVML 488
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN---VTFLSI 58
D+A R+F G+ +NVV W+ +IA EA+EAF ++ GK VT +I
Sbjct: 230 DEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIM----QGKGMGFSWVTLTTI 285
Query: 59 LFACSYSGLIEEGIKVFDIMVHD 81
L C+ + G ++ ++V
Sbjct: 286 LPVCARVTALGSGKEIHAVIVKS 308
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 1 MDDAERIF---GGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+D+A R+F G +D +W M ++ +G +EAL +Y ++ C G+ N F
Sbjct: 125 VDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMV-CQFGQLGNFAFSM 183
Query: 58 ILFACSYSGLIEEGIKV 74
L ACS G ++ G V
Sbjct: 184 ALKACSDLGDLQTGRAV 200
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F I + + V W+ +IA HA HG +AL+ F ++ +PN VTFL +LF
Sbjct: 528 LGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG-VEPNAVTFLCVLF 586
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS+ GL+EEG++ F +M + L +EHY VDLL+ E
Sbjct: 587 ACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR+H NV++GEL A+ +N A Y L
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLL 686
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D ++F + D++++ W+ ++ +++ + +A+E F + PN TF S+L
Sbjct: 427 LEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS-NMRAEGIAPNQFTFSSVLV 485
Query: 61 ACSYSGLIEEGIKVFDIM 78
+C+ L+E G +V I+
Sbjct: 486 SCANLCLLEYGQQVHGII 503
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F I + + V W+ +IA HA HG +AL+ F ++ +PN VTFL +LF
Sbjct: 528 LGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG-VEPNAVTFLCVLF 586
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS+ GL+EEG++ F +M + L +EHY VDLL+ E
Sbjct: 587 ACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR+H NV++GEL A+ +N A Y L
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLL 686
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D ++F + D++++ W+ ++ +++ + +A+E F + PN TF S+L
Sbjct: 427 LEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS-NMRAEGIAPNQFTFSSVLV 485
Query: 61 ACSYSGLIEEGIKVFDIM 78
+C+ L+E G +V I+
Sbjct: 486 SCANLCLLEYGQQVHGII 503
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +K V W+ MI A+HG+ +A++ F + D PN +TF+ +L
Sbjct: 305 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGVLN 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+++G+ +F+ M ++ ++ +EHYG VDLL E P
Sbjct: 361 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 420
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR H NV++GE V K L+P+N YT L
Sbjct: 421 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLL 460
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F + NV +W+ MI + + +A+ +Y ++ + +PN T+ ++L ACS +
Sbjct: 113 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMM-VAHFRPNKYTYPAVLKACSDA 171
Query: 66 GLIEEGIKV 74
G++ EG++V
Sbjct: 172 GVVAEGVQV 180
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F K++V WS MIAS+ IHG R+A++ F ++ + +P++VTF +L
Sbjct: 635 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK-AGVRPSHVTFTCVLS 693
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F +M +F + L +Y VDLL E +
Sbjct: 694 ACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDA 753
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACRIH+N+ + E +A FHLDP + Y+ L
Sbjct: 754 SIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLL 793
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +K+V+ WS MIA +A + EAL F+ +I +PN+VT +S L AC+
Sbjct: 225 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE-KRFEPNSVTVVSALQACA 283
Query: 64 YSGLIEEGIKVFDIMV 79
S +EEG K+ I V
Sbjct: 284 VSRNLEEGKKIHKIAV 299
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---------KPN 51
+ DA ++F G+I ++VVIWS MIA++ IHG+ EALE F +I G +P
Sbjct: 389 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQ 448
Query: 52 NVTFLSILFACSYSGLIEEGIKVFDIMVH 80
L+I +C+ + I +K F + H
Sbjct: 449 VQPPLAIT-SCTLATHIPWKVKAFYMRAH 476
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F NV +W+ + S+ Q E L F+L+I + P+N T L
Sbjct: 52 LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111
Query: 61 ACSYSGLIEEG 71
AC+ ++E G
Sbjct: 112 ACAGLRMLELG 122
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 17/156 (10%)
Query: 3 DAERI-FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A RI F GI KN+V W+ +IA +A+HG+ +EA+E F L+ S KP+ ++F +L A
Sbjct: 438 QASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR-SGQKPDIISFTCVLSA 496
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS SGL EEG F+ M + ++ +EHY V LL+ +
Sbjct: 497 CSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDAC 556
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALL +CR+H+NV +GE+ A+ F L+P N Y
Sbjct: 557 VWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNY 592
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + + +VV WS ++A++A G EA F + S +PN +++ ++
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD-SGVQPNLISWNGMIAGF 225
Query: 63 SYSGLIEEGIKVF-DIMVHDFQLDLNLEHYGITVD--LLATGETEPYVWGALL 112
++SGL E + +F D+ + F+ D G T+ L A G+ E V G L+
Sbjct: 226 NHSGLYSEAVLMFLDMHLRGFEPD------GTTISSVLPAVGDLEDLVMGILI 272
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++ + R+F + D+ NVV W+ MIA + +G++ EALE F + + KPN+VT
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFR-EMQIAGVKPNSVTIP 390
Query: 57 SILFAC 62
+L AC
Sbjct: 391 CLLPAC 396
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASH-AIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
MDDA +F + ++NVV W+ +I A HG+ REALE ++ + KP+ VTF S+L
Sbjct: 401 MDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALE-YFDQMKKQGIKPDKVTFTSVL 459
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETE----------- 104
AC++ GL+EEG K F M D+ + +EHY VDLL E E
Sbjct: 460 SACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPG 519
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VWGALL ACR+H +V+ GE A++ LDP +D Y +L
Sbjct: 520 PSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVAL 560
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++VV W+ M+ +A G EA+ F + KP+ +TF S+L
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ-QGIKPDKMTFTSVLT 358
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDLNLE 89
+CS ++EG ++ +VH + LD+ L+
Sbjct: 359 SCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ 388
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF + +KNVV W+ +IA +A GQ ALE + ++ PN +TF SIL
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLE-TMQQAEVAPNKITFASILQ 257
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
C+ +E G KV ++
Sbjct: 258 GCTTPAALEHGKKVHRYIIQS 278
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+F I D+N+V W+ MI + + EA + Y + + KP+ VTF+S+L
Sbjct: 98 LTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKC-YETMKLAGCKPDKVTFVSLLN 156
Query: 61 ACSYSGLIEEGIKV 74
A + L++ G KV
Sbjct: 157 AFTNPELLQLGQKV 170
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +K V W+ MI A+HG+ +A++ F + D PN +TF+ +L
Sbjct: 353 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGVLN 408
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+++G+ +F+ M ++ ++ +EHYG VDLL E P
Sbjct: 409 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 468
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR H NV++GE V K L+P+N YT L
Sbjct: 469 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLL 508
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F + NV +W+ MI + + +A+ +Y ++ + +PN T+ ++L ACS +
Sbjct: 92 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMM-VAHFRPNKYTYPAVLKACSDA 150
Query: 66 GLIEEGIKV 74
G++ EG++V
Sbjct: 151 GVVAEGVQV 159
>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
Length = 822
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R F + D+NV+ W+ MI+ A HG AL F+ +I + KPN+VT++++L
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI-LTGVKPNDVTYIAVLS 559
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+ EG + F M D L +EHY VDLLA + +
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADA 619
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR H N+++GE+ AK+ L+P++ A Y L
Sbjct: 620 LVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLL 659
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A ++F G+I+K VV+W+ +I+ + EA+E F + DG +P+ T S++
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE--DGFEPDRYTMSSMI 261
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC+ G + G+++ + +
Sbjct: 262 SACTELGSVRLGLQLHSLALR 282
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + +V+ W+ +I+ + G + + A + + KPN++T+ SIL
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367
Query: 61 ACS 63
+C+
Sbjct: 368 SCA 370
>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
Length = 822
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R F + D+NV+ W+ MI+ A HG AL F+ +I + KPN+VT++++L
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI-LTGVKPNDVTYIAVLS 559
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+ EG + F M D L +EHY VDLLA + +
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADA 619
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR H N+++GE+ AK+ L+P++ A Y L
Sbjct: 620 LVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLL 659
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A ++F G+I+K VV+W+ +I+ + EA+E F + DG +P+ T S++
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE--DGFEPDRYTMSSMI 261
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC+ G + G+++ + +
Sbjct: 262 SACTELGSVRLGLQLHSLALR 282
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHG-QEREALEAFYLVIHCSDGKPNNVTFLSIL 59
MD A ++F + +V+ W+ +I+ + G QE + + F +++ S KPN++T+ SIL
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESI-KPNHITYSSIL 366
Query: 60 FACS 63
AC+
Sbjct: 367 KACA 370
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+++F G+ K++ W+ MI+ A+HG ALE F + +P+++TF+ +L
Sbjct: 417 IEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFR-QMRDEGFEPDDITFVGVLS 475
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E G + F MV D+ + L+HYG +DLL E +P
Sbjct: 476 ACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDG 535
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACR+H NV++GE AK F L+P+N Y L
Sbjct: 536 AIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F I ++ V W+ MIA +A G+ EAL AF+ + ++ PN T +++L
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL-AFFQEMKRANVAPNESTMVTVLS 272
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ SG +E G V + D L NL +D+
Sbjct: 273 ACAQSGSLELGNWVRS-WIEDHGLGSNLRLVNALIDM 308
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F GI +K+++ W+ MI ++ +EAL A + + S+ +PN+VTF+SIL
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL-ALFRKMQQSNVEPNDVTFVSILP 373
Query: 61 ACSYSGLIEEG 71
AC+Y G ++ G
Sbjct: 374 ACAYLGALDLG 384
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F I N IW+ MI +++ A++ FY+ + +PN+ TF +L +C+ G
Sbjct: 88 LFESIEQPNQFIWNTMIRGNSLSSSPVGAID-FYVRMLLCGVEPNSYTFPFLLKSCAKVG 146
Query: 67 LIEEGIKVFDIMVHDFQLDLNLE 89
+EG + +H L L LE
Sbjct: 147 ATQEGKQ-----IHGHVLKLGLE 164
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + +N+ W+ MI A++G+E +AL F+ + + +PN++TF+ +L AC
Sbjct: 295 NAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFW-KMQMAGVQPNDITFIGLLGAC 353
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG +F+ MV+DF + EHYG+ VDLL E P +
Sbjct: 354 SHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGL 413
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL GAC IH V++GE +AK L+P++ + Y L
Sbjct: 414 WGALAGACNIHGEVELGEEIAKKLIELEPRHGSRYILL 451
Score = 35.4 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F G+ +N WS M+ EAL F ++ PN +S++
Sbjct: 191 LSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMV-ARGVVPNESILVSVIS 249
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
AC+ +E G + VH + + E +G +LAT + Y G C HN
Sbjct: 250 ACAQLRSLEHG-----VWVHAY---VKRELHGSMSVILATAIVDMY------GKCGCIHN 295
>gi|357117625|ref|XP_003560564.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Brachypodium distachyon]
Length = 435
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 19/161 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
+DA R F ++NV +W+ +I+ H HG EAL F + DG +PN+VTFL++L
Sbjct: 189 EDARRAFAAAPERNVTMWTAVISGHGQHGHVGEALALFDQMTR--DGFRPNDVTFLAVLS 246
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETE 104
AC++ GL++EG++ F M D+ L EHY VD+LA +
Sbjct: 247 ACAHGGLVDEGLRHFSSMPLDYGLTPKSEHYAAVVDMLARVGRLHDAYELVKNLPDCQEH 306
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR H +V++ EL A+ F L P N Y L
Sbjct: 307 SVVWGALLGACRKHGDVRLVELAARRFFRLQPGNAGKYVVL 347
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ + VV W+ +I+ G E +ALE F + +P+ TF S+L AC+
Sbjct: 89 ARNLFDGMPRRGVVAWNALISGCTRGGLESQALEMFG-SMRAEGLRPDQFTFSSVLCACA 147
Query: 64 YSGLIEEGIKVFDIMV 79
++ G +V +MV
Sbjct: 148 RLAALQHGWRVHGVMV 163
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 17/156 (10%)
Query: 3 DAERI-FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A RI F GI KN+V W+ +IA +A+HG+ +EA+E F L+ S KP+ ++F +L A
Sbjct: 438 QASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR-SGQKPDIISFTCVLSA 496
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS SGL EEG F+ M + ++ +EHY V LL+ +
Sbjct: 497 CSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDAC 556
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALL +CR+H+NV +GE+ A+ F L+P N Y
Sbjct: 557 VWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNY 592
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + + +VV WS ++A++A G EA F + S +PN +++ ++
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD-SGVQPNLISWNGMIAGF 225
Query: 63 SYSGLIEEGIKVF-DIMVHDFQLDLNLEHYGITVD--LLATGETEPYVWGALL 112
++SGL E + +F D+ + F+ D G T+ L A G+ E V G L+
Sbjct: 226 NHSGLYSEAVLMFLDMHLRGFEPD------GTTISSVLPAVGDLEDLVMGILI 272
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++ + R+F + D+ NVV W+ MIA + +G++ EALE F + + KPN+VT
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFR-EMQIAGVKPNSVTIP 390
Query: 57 SILFAC 62
+L AC
Sbjct: 391 CLLPAC 396
>gi|297738072|emb|CBI27273.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F GI +K+++ W+ MI A+HG ALE F + +P+++TF+ +L ACS++G
Sbjct: 121 LFEGICEKDIISWNVMIGGLAMHGHANMALELFR-QMRDEGFEPDDITFVGVLSACSHAG 179
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVWGAL 111
L+E G + F MV D+ + L+HYG +DLL E +P +WG+L
Sbjct: 180 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 239
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGACR+H NV++GE AK F L+P+N Y L
Sbjct: 240 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 273
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + IF + KNV+ WS MI ++ HGQ REALE F+++++ S PN +TF+S+L+
Sbjct: 253 IDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLN-SGIIPNRITFISLLY 311
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G+++F +M + + +++HY VDLL E +
Sbjct: 312 ACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDE 371
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W A LGACRIH V + E AK L +N +Y L
Sbjct: 372 GIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILL 411
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 21/153 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A +F I K+V W+ +I+ +A HG REA+ F + + KPN +TF ++L
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKF-MEMQKMGIKPNVITFTAVLT 356
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+GL+EEG +F M D+ L +EHYG VDLL +
Sbjct: 357 ACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNA 416
Query: 106 YVWGALLGACRIHHNVKIGE-----LVAKDPFH 133
+WGALL ACRIH N+++GE L+A DP+H
Sbjct: 417 VIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +KN + W+ MI+ + +EAL+ F+ + SD +P+NV+ + L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFH-EMQNSDVEPDNVSLANALS 255
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 256 ACAQLGALEQG 266
>gi|294462449|gb|ADE76772.1| unknown [Picea sitchensis]
Length = 232
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 16/142 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F G+ +NVV W+ MIA++AIHG ++AL+ F + H SD PN VTF+ +L AC
Sbjct: 83 DASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKH-SDTSPNQVTFVGVLSAC 141
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYV 107
++GL+ EG + F+ M D+ + +EHY VDLL TG E + V
Sbjct: 142 CHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAV 201
Query: 108 WGALLGACRIHHNVKIGELVAK 129
W +LLGACR H NV +GE VA+
Sbjct: 202 WQSLLGACRTHANVDLGEKVAE 223
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K+++ W+ MIA + +HG A+ F + + +P+ V+F+SIL+ACS
Sbjct: 253 ARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQ-AGIEPDEVSFISILYACS 311
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG + F++M + + LEHY VDLLA E + +W
Sbjct: 312 HSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIW 371
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIHH+VK+ E VA+ F L+P+N YY L
Sbjct: 372 GALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLL 408
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + + VV W+ +IA++A G EA+ F+ + P+ T ++L
Sbjct: 49 LDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR-EGVSPDIFTITTVLH 107
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDL 86
AC+ +G +E G V + I +D Q ++
Sbjct: 108 ACACNGSLENGKDVHNYIRENDMQSNI 134
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + K+++ W+ MI ++ + EAL F ++ + KP+ T IL
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV--LEMKPDGTTLACILP 207
Query: 61 ACSYSGLIEEGIKV 74
AC+ ++ G +V
Sbjct: 208 ACASLASLDRGKEV 221
>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
Length = 853
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + K+VV W+ MI+ +A HG +AL F+ + S KP+ +TF+++L
Sbjct: 318 LGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFH-EMRDSKTKPDWITFVAVLL 376
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY---- 106
AC+++GL++ G+ FD MV D++++ +HY VDLL G+ E P+
Sbjct: 377 ACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHA 436
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+G LLGACR+H NV++ E A+ LDP+N A Y L
Sbjct: 437 AVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAGYVQL 476
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 16/152 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA IF + ++ VV W+ MIA+ A++G+ REAL+ F L+ S +PNN+TFL++L
Sbjct: 408 LNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSE-SGIEPNNITFLAVLQ 466
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + G +E+G + F +M + ++ L+HY +DLL + +
Sbjct: 467 ACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDE 526
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137
+WGALLGAC+IH+N++IGE V++ F L P+
Sbjct: 527 GIWGALLGACKIHNNMEIGEYVSRYLFELQPR 558
>gi|414587709|tpg|DAA38280.1| TPA: hypothetical protein ZEAMMB73_630366 [Zea mays]
Length = 563
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AER F + K++V WS MI + IHG ++AL F ++ KPN VTFLS+L ACS
Sbjct: 368 AERCFSRTLQKDIVSWSSMIEAFTIHGHGKQALTLFNQMLK-EGVKPNEVTFLSLLSACS 426
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+ E ++FD M F+ L HY VD+L + + +W
Sbjct: 427 HSGLVSEARELFDCMTKKFRFAPELGHYTCMVDVLGRSGNLEEALQVISNMKVKADGRIW 486
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG+CRIH N K+ A+ L+P N Y+ L
Sbjct: 487 GALLGSCRIHSNSKLAYFAAQKLVELEPSNVGYHVLL 523
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +K V W+ MI A+HG+ +A++ F + D PN +TF+ +L
Sbjct: 354 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DIYPNEITFVGVLN 409
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+++G+ +F+ M ++ ++ +EHYG VDLL E P
Sbjct: 410 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 469
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR H NV++GE V K L+P+N YT L
Sbjct: 470 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLL 509
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F + NV +W+ MI + + +A+ +Y ++ + +PN T+ ++L ACS S
Sbjct: 93 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMV-VAHSRPNKYTYPAVLKACSDS 151
Query: 66 GLIEEGIKV 74
G++ EG++V
Sbjct: 152 GVVAEGVQV 160
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+E+G + F IM +DF ++ LEHY VDLL+ TG ET P +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CR +H++++ E VA+ F L+P+N YY L
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLL 641
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NVV W+ MIA + G+ A++ + K + V SIL
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ-QMEKEGVKLDVVAITSILH 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---TGETEPYVWGALLGACRI 117
AC+ SG ++ G V D + + ++ NL +D+ A + E V+ ++ I
Sbjct: 361 ACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDII 419
Query: 118 HHNVKIGEL 126
N IGEL
Sbjct: 420 SWNTMIGEL 428
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 21/153 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A +F I K+V W+ +I+ +A HG REA+ F + + KPN +TF ++L
Sbjct: 327 MGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKF-MEMQKMGIKPNVITFTTVLT 385
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+GL+EEG +F M D+ L +EHYG VDLL+ +
Sbjct: 386 ACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNA 445
Query: 106 YVWGALLGACRIHHNVKIGE-----LVAKDPFH 133
+WGALL ACRIH N+++GE L+A DP+H
Sbjct: 446 VIWGALLKACRIHKNIELGEEIGEILIAIDPYH 478
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F +++KN + W+ MI+ + G +EAL+ F+ + SD +P+NV+ + L
Sbjct: 226 MDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFH-EMQNSDVEPDNVSLANALS 284
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 285 ACAQLGALEQG 295
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF + K+VV+W+ +I+S+ +HG R+A++ F +I P++++F+S+L
Sbjct: 328 LESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMID-HGFSPSHISFISVLG 386
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG K+F+ MV + + ++EHY VDLL E P
Sbjct: 387 ACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGP 446
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLGACRIH +V++ E +K F L+P N Y L
Sbjct: 447 KVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLL 486
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFAC 62
A +F + KNVV WS MIA +A +G+ EALE F ++++ D PN+VT +S+L AC
Sbjct: 228 ASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQAC 287
Query: 63 SYSGLIEEG 71
+ +E+G
Sbjct: 288 AAFAALEQG 296
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 17/154 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF ++ +VV W+ MI+ + +HG+ ++ALE F + KPN VTFL+IL A
Sbjct: 581 ARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFG-KMEGGSIKPNGVTFLAILSALC 639
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+EEG KVF M + L+ NL+HY VDLL E + +W
Sbjct: 640 HSGLLEEGRKVFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIW 698
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LL AC++H N ++G +AK F DP+N+ YY
Sbjct: 699 GTLLSACKLHDNFEMGLRIAKKAFASDPENEGYY 732
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + KNV W+ MI +A HG+ +EALE FY + KP+ +TF+ L
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQ-MQQEGVKPDWITFVGALS 724
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GLIEEG+ F M +F ++ +EHYG VDL E +
Sbjct: 725 ACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS 783
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC++H NV++ E A+ LDP ++ + L
Sbjct: 784 RVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVIL 823
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + +NVV W+ MIA A HG+ EA F +I S +PN VTF+SIL
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE-SGIEPNRVTFMSILG 421
Query: 61 ACSYSGLIEEGIKVFD 76
ACS ++ G ++ D
Sbjct: 422 ACSSPSALKRGQQIQD 437
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA R+F I +NVV W+ MI ++ H Q AL F ++ +G KPN+ TF SIL
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL--KEGIKPNSSTFTSIL 521
Query: 60 FACSYSGLIEEGIKV-FDIMVHDFQLDLNLEH 90
C S +E G V F IM + DL++ +
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + +++V W+ MI A HG+ ++A F + +P+ V F+S+L AC
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRAC 322
Query: 63 SYSGLIEEGIKV 74
++ +E+G KV
Sbjct: 323 NHPEALEQGKKV 334
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + +++V W+ +IA HG+ + A + F ++ S KP+ +TF +L AC+
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-SGIKPDKITFTGLLNACA 626
Query: 64 YSGLIEEGIKV 74
+ EG ++
Sbjct: 627 SPEALTEGRRL 637
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++IF + +K+V W+ ++ + HG EA + ++ S KP+ TF+S+L AC+
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACA 222
Query: 64 YSGLIEEGIKVFDIMV 79
+ +++G +++++++
Sbjct: 223 DARNVDKGRELYNLIL 238
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+RIF + K+++ W+ M+ A+HG REAL F+L + +D +P+ +TF+ +L
Sbjct: 333 IDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHL-MQTTDLQPDEITFIGVLT 391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++EG K+F + + + L EHYG VDLL + +
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG++LGACR+++N+++GE A+ L+P ND Y L
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILL 491
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + DK+V WS +I + + + EAL+ F V S+ +PN VT L+++
Sbjct: 231 LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 61 ACSYSGLIEEGIKVFD 76
AC+ G +E G V D
Sbjct: 291 ACAQLGDLETGRWVHD 306
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F +DK+VV+WS MI + +HG+ ++A++ FY + + PN+VTF+ +L
Sbjct: 422 VDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFY-AMKQAGVCPNDVTFVGLLT 480
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-------------ATGETEP-- 105
AC++SGL+EEG ++F M + + ++ +HY VDLL T EP
Sbjct: 481 ACNHSGLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGV 539
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC+I+ +V +GE A+ F LDP N +Y L
Sbjct: 540 SVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQL 579
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F G+ D+N+V W+ MI+ + +G EAL F + + KP+ + +S+L
Sbjct: 220 VEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQ-RNVKPDWIALVSVLR 278
Query: 61 ACSYSGLIEEGIKVFDIMVH---DFQLDL 86
A + +E+G + +V +F+ DL
Sbjct: 279 AYTDVEDLEQGKSIHGCVVKMGLEFEPDL 307
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K++V W+ MIA + +HG EA+ AF + + S +P+ V+F+SIL+ACS
Sbjct: 506 ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN-SGIEPDEVSFISILYACS 564
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG F++M ++ ++ EHY VDLLA E + +W
Sbjct: 565 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 624
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRI+H+VK+ E VA+ F L+P+N YY L
Sbjct: 625 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLL 661
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F + K++V W+ MI ++ + EAL F + + + KPN++T IL
Sbjct: 403 MGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY--NSKPNSITMACILP 460
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLD 85
AC+ +E G ++ I+ + F LD
Sbjct: 461 ACASLAALERGQEIHGHILRNGFSLD 486
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + +++VV W+ MIA +A G ++ F+ + P+ T +IL
Sbjct: 302 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH-EMEKEGISPDIFTITTILH 360
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDL 86
AC+ +GL+E G V + I + Q DL
Sbjct: 361 ACACTGLLENGKDVHNYIKENKMQSDL 387
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K+++ W+ MI+ +HG EA+ F + + KP+ +TF SIL+ACS
Sbjct: 909 ARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQ-KMRIAGIKPDEITFTSILYACS 967
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+ EG F+ M+ + ++ LEHY VDLLA TG ET P +W
Sbjct: 968 HSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIHH+V++ E VA+ F L+P N YY L
Sbjct: 1028 GALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLL 1064
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A RIF G+ +++V+ WS MI HG EA + ++ C KPN VTF+ +L
Sbjct: 297 MEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGV-KPNEVTFMGLLS 355
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++GI++F M+ ++++ + HYG +DLL+ E
Sbjct: 356 ACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNV 415
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VWGALLG CRIH + + GE VA+ LD + Y
Sbjct: 416 IVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYV 453
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 45/71 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F +++++V+ W+ MI + +G+ +A+E F+ + P++VT +S+L
Sbjct: 195 LESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLS 254
Query: 61 ACSYSGLIEEG 71
AC++ G ++ G
Sbjct: 255 ACAHVGALDFG 265
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHC-SDGKPNNVTFLSILFAC 62
A+ IF + + NV W+ +I +H G AL F + S PN + S++ AC
Sbjct: 64 AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95
+ I +G+KV +++ LD N+ H G ++
Sbjct: 124 AGLEAIADGLKVHAVVIKS-GLDNNI-HLGTSL 154
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG EA+ F + + +P+ V+F+SIL+ACS
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL+E+G + F IM +DF ++ LEHY VDLL+ TG ET P +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIW 604
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CR +H++++ E VA+ F L+P+N YY L
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLL 641
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NVV W+ MIA + G+ A++ + K + V SIL
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ-QMEKEGVKLDVVAITSILH 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---TGETEPYVWGALLGACRI 117
AC+ SG ++ G V D + + ++ NL +D+ A + E V+ ++ I
Sbjct: 361 ACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDII 419
Query: 118 HHNVKIGEL 126
N IGEL
Sbjct: 420 SWNTMIGEL 428
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA IF ++ +NVV W+ MI +A++G+ A+ F+ ++ C KP+ VTF +L
Sbjct: 344 VKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQ-KPDMVTFTCLLA 402
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+ +GL EEG F M +++ + +EHY V LL E +
Sbjct: 403 ACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDA 462
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
Y+WG+LLG+CR+H NV + E+ A+ FHL+P+N Y L
Sbjct: 463 YIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLL 502
>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
Length = 312
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 16/148 (10%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+KNVV W+ MI + +HG +AL + + KPN +TF+S+L ACS++GL++EG
Sbjct: 3 NKNVVSWNAMIVGYGMHGHGEDAL-VLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGW 61
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRI 117
K ++ M D+ + +EHY VDLL E VWGA LG+CRI
Sbjct: 62 KCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRI 121
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYYTSL 145
H N+++GE VA+ +LDP N YY L
Sbjct: 122 HCNIELGERVAELLLNLDPDNAGYYVLL 149
>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
Length = 570
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 18/156 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA ++F + + VV WS MI+++A HG EAL+ F L+ S+G +PN+ TF ++L A
Sbjct: 378 DARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMK--SEGVRPNSFTFTAVLVA 435
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------- 106
C +SGL+ EG+K F+ ++ D+Q+ LEHY VD+L A E Y
Sbjct: 436 CGHSGLVNEGLKHFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKC 495
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGA LG C++H N+++ E VAKD F + +Y
Sbjct: 496 VWGAFLGGCKLHSNLELAEFVAKDLFQSGSNDVTFY 531
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +F G+ +++V W+ M+A + HG EA++ F+ ++ G + VT +S+L AC
Sbjct: 278 AEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGF-DCVTLVSVLSACG 336
Query: 64 YSGLIEEGIKVFDIMVHDFQ----LDLNLEHYGITVDLLA 99
SG +E G VH+F LD + + VD+ A
Sbjct: 337 RSGALETG-----KWVHEFARSHGLDADARIGNVLVDMYA 371
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I D++V+ W+ MI + HG R AL+ F + + +PN++T+LS++ ACS
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGA-VEPNDITYLSVISACS 562
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YVW 108
+SGL++EG++ F M D+ L+ +++HYG VDLL E P V+
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH N+++GE AK F L+P Y+ L
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A IF G+ K VV W+ M+ + +G+ +A+ F ++ +G P VT + L
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE--EGIDPTGVTIMEAL 356
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC+ G +E G VH F LNL
Sbjct: 357 HACADLGDLERG-----KFVHKFVDQLNL 380
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD--GKPNNVTFLSI 58
+DDA ++F + ++++V W+ +IA + +G ++ALE LV+ D +P+++T +++
Sbjct: 198 IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE---LVLRMQDEGQRPDSITLVTV 254
Query: 59 LFACSYSGLIEEG 71
L A + GL+ G
Sbjct: 255 LPAAADVGLLMVG 267
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K++V W+ MIA + +HG EA+ AF + + S +P+ V+F+SIL+ACS
Sbjct: 379 ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN-SGIEPDEVSFISILYACS 437
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG F++M ++ ++ EHY VDLLA E + +W
Sbjct: 438 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 497
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRI+H+VK+ E VA+ F L+P+N YY L
Sbjct: 498 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLL 534
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + +++VV W+ MIA +A G ++ F+ + D PN++T IL
Sbjct: 275 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH-EMEKEDLFPNSITMACILP 333
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLD 85
AC+ +E G ++ I+ + F LD
Sbjct: 334 ACASLAALERGQEIHGHILRNGFSLD 359
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + +++V+ W+ MI + +G REAL+ F + + S KPN +TFLS++
Sbjct: 496 IQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGS-VKPNEITFLSVIA 554
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW------------ 108
ACS+SGL+EEG+ F+ M ++ L+ ++HYG VDLL W
Sbjct: 555 ACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGI 614
Query: 109 ---GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGACRIH NV++GE A + F LDP + Y+ L
Sbjct: 615 TVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLL 654
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
A +F G+ +NVV W+ MI +A +G+ EA F ++ +G +P NV+ + L A
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKML--DEGVEPTNVSMMGALHA 353
Query: 62 CSYSGLIEEGIKVFDIM 78
C+ G +E G V ++
Sbjct: 354 CANLGDLERGRYVHRLL 370
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +FG + K VV W+ MI +A +G EAL F + D KP++ T +S++
Sbjct: 395 VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLF-CEMQSHDIKPDSFTLVSVIT 453
Query: 61 A 61
A
Sbjct: 454 A 454
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 15/151 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV +S MI A HG+ +EAL+ F+ ++ + KPN VTF+ L
Sbjct: 335 VEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALT 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY- 106
ACS+SGL+++G +VF M F ++ +HY VDLL T EP+
Sbjct: 395 ACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHG 454
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACRIH+N I E+ A+ F L+P
Sbjct: 455 GVWGALLGACRIHNNPDIAEIAAEHLFELEP 485
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F +KN V W+ MI + +HG EAL+ F ++H +P++VTFLS+L+
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLG-FQPSSVTFLSVLY 515
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG ++F MV+ ++++ EHY VD+L E P
Sbjct: 516 ACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGP 575
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGAC IH + + + ++ F LDP N YY L
Sbjct: 576 AVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLL 615
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F +K V W+ MI+ +A G A+ F ++ ++ PN VT SIL
Sbjct: 356 IDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMM-TTEFTPNPVTITSILS 414
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90
AC+ G + F VH NLE
Sbjct: 415 ACAQLGALS-----FGKSVHQLIKSKNLEQ 439
>gi|224080943|ref|XP_002306238.1| predicted protein [Populus trichocarpa]
gi|222855687|gb|EEE93234.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+E++F + NVV W+ MI+ + +HG+ E+LE F + KPN VT ++L
Sbjct: 260 LNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFK-KMKGFGLKPNPVTLTAVLA 318
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------ATG-------ETEP 105
+CS+SGLI+EG ++F M + + ++EHY VDLL A G E
Sbjct: 319 SCSHSGLIDEGRRIFYSMQSHYGFEPSVEHYACMVDLLGRFGYLEEALGLVQRMKLEATA 378
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG C +H NV IGE+ A F L+P N Y +L
Sbjct: 379 SVWGALLGGCVMHKNVNIGEIAAHCLFELEPSNPGNYIAL 418
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD R+F G+ K++ W+ +I +AI+G+ EA+E+F +I CS P+ +TF+++L
Sbjct: 329 MDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMI-CSGFSPDGITFIALLS 387
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
CS++GL ++G ++F++M D + +EHY VD+L + P+
Sbjct: 388 GCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTG 447
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR+H NV + E VAK F L+P N Y L
Sbjct: 448 SIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVML 487
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +NV+ WS MIA++ HGQ +ALE F +++ S PN +TF+S+L+
Sbjct: 303 VESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLR-SGILPNRITFVSLLY 361
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GLIEEG + F M ++ + +++HY VDLL E +
Sbjct: 362 ACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDE 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH ++ + E VA+ L + +Y L
Sbjct: 422 VLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLL 461
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +NV W+ MIA A++G ER+AL + + + +PN++TF+ +L ACS
Sbjct: 287 AVRVFAAMPVRNVYSWNAMIAGLAMNGGERQALSLLW-KMQMAGVRPNDITFIGLLSACS 345
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+ EG ++FD M+ DF + HYG+ VDL+ E P +W
Sbjct: 346 HSGLVNEGRRLFDSMIEDFGIQPVQHHYGLMVDLIGRSGRVKEALFFVKSMPVEPHPGLW 405
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKN 138
GAL AC++H V++GE VAK L+P++
Sbjct: 406 GALASACKMHGEVELGEEVAKKLIELEPRH 435
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+ A F + D+NVV W+ M+ ++A G +A + F D P N T+ S+
Sbjct: 151 LQRARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLF-------DAMPQRNAATWSSM 203
Query: 59 LFACSYSGLIEEGIKVFDIMV 79
L SG E ++VF MV
Sbjct: 204 LTGLVLSGRCGEALRVFHDMV 224
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + +N WS M+ + G+ EAL F+ ++ S PN +S++
Sbjct: 182 LSQARDLFDAMPQRNAATWSSMLTGLVLSGRCGEALRVFHDMVR-SGAVPNEPALVSVVS 240
Query: 61 ACSYSGLIEEG 71
AC+ +E G
Sbjct: 241 ACAQLRSLEYG 251
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DA +F + +NV+ W+ +I A HG+ ++AL+ F + KP+ VTF+S+L A
Sbjct: 582 SDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFER-MKMEGVKPDIVTFVSLLSA 640
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY----- 106
CS++GL+EEG + F M DF + +EHYG VDLL +T P+
Sbjct: 641 CSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTR 700
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH NV + E A+ LD N Y +L
Sbjct: 701 IWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVAL 739
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F ++ K+V+ W+ MI A G EAL Y + + +PN VT+ SIL
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEAL-TVYQEMQQAGVEPNRVTYTSILN 437
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +E G ++ +V
Sbjct: 438 ACSSPAALEWGRRIHQQVV 456
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA ++F +I +++V ++ MI +A H +EAL+ F + +G KP+ VT++++L
Sbjct: 480 VKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE--EGLKPDKVTYINML 537
Query: 60 FACSYSGLIE 69
AC+ SG +E
Sbjct: 538 NACANSGSLE 547
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+RIF + K+++ W+ M+ A+HG REAL F L + +D +P+ +TF+ +L
Sbjct: 333 IDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRL-MQTTDLQPDEITFIGVLT 391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++EG K+F + + + L EHYG VDLL + +
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG++LGACR+++N+++GE A+ L+P ND Y L
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILL 491
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + DK+V WS +I + + + EAL+ F V S+ +PN VT L+++
Sbjct: 231 LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 61 ACSYSGLIEEGIKVFD 76
AC+ G +E G V D
Sbjct: 291 ACAQLGDLETGRWVHD 306
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I +++ +W+ +I A+HG EAL+ F + KPN++TF+ +L
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA-EMERQGVKPNDITFIGLLH 508
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG K+F+ MVH F L +EHYG VDLL +
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
VWGAL+ ACR+H N ++GEL A ++P+N Y
Sbjct: 569 IVWGALVAACRLHKNPQLGELAATQLLEIEPENCGY 604
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ K VV W+ MIA I E ++ + + PN +T LS++ C
Sbjct: 251 ARQLFNGLTQKTVVSWTAMIAG-CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECG 309
Query: 64 YSGLIEEGIKVFD-IMVHDFQLDLNL-----EHYGITVDLL-------ATGETEPYVWGA 110
++G ++ G ++ I+ + F + L L + YG D+ +T + +W A
Sbjct: 310 FTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTA 369
Query: 111 LLGA 114
+L A
Sbjct: 370 MLSA 373
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I +++ +W+ +I A+HG EAL+ F + KPN++TF+ +L
Sbjct: 410 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA-EMERQGVKPNDITFIGLLH 468
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG K+F+ MVH F L +EHYG VDLL +
Sbjct: 469 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 528
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
VWGAL+ ACR+H N ++GEL A ++P+N Y
Sbjct: 529 IVWGALVAACRLHKNPQLGELAATQLLEIEPENCGY 564
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A IF G+ +KNV+ W+ +IA + +HGQ A++ F +I SD P+ F+S+L AC
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMIS-SDELPDGAAFVSVLSAC 371
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL E+G+ F M D+ L EHY VDLL E + V
Sbjct: 372 SHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC+IH NV++ EL + +P N YY L
Sbjct: 432 WGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLL 469
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ +K ++ W+ MI+ +A +G L+ Y + + P+ VT + +L
Sbjct: 210 VDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD-LYRKMEFTGIVPDPVTLVGVLS 268
Query: 61 ACSYSGLIEEGIKV 74
+C++ G G +V
Sbjct: 269 SCAHLGAHAAGREV 282
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 21/161 (13%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSILF 60
+A IF + +KNVV W+ MI+ + +HGQ EAL+ + ++ D + P + TFLS+++
Sbjct: 467 EARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDML---DARILPTSSTFLSVIY 523
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETE 104
ACS+ GL++EG KVF +M +++++ +EH VDLL
Sbjct: 524 ACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIG 583
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VWGALLGAC +H N + +L ++ F LD +N YY L
Sbjct: 584 PGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLL 624
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A IF +++K + W+ MI+ +A +G A+ F L+ + +PN +T S L
Sbjct: 364 MESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQEL-NVQPNPITISSTLS 422
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC++ G + G V I+ + +L+LN+ +D+ A
Sbjct: 423 ACAHLGALSLGKWVHRIISKE-KLELNVYVMTALIDMYA 460
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I +++ +W+ +I A+HG EAL+ F + KPN++TF+ +L
Sbjct: 324 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA-EMERQGVKPNDITFIGLLH 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG K+F+ MVH F L +EHYG VDLL +
Sbjct: 383 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
VWGAL+ ACR+H N ++GEL A ++P+N Y
Sbjct: 443 IVWGALVAACRLHKNPQLGELAATQLLEIEPENCGY 478
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+++F K+VV+W+ MI ++ HG EAL F+ + CS G P++VTF+ +L AC
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDM--CSSGVPPDDVTFIGVLSAC 449
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
SYSG ++EG+++F+ M +Q++ +EHY VDLL E + V
Sbjct: 450 SYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIV 509
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR H + + E+ + L+PKN Y L
Sbjct: 510 WGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLL 547
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + +NVV W+ M++ +A +G+ A + F ++ + N V++ ++L
Sbjct: 195 LDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM-----PERNEVSWTAMLL 249
Query: 61 ACSYSGLIEEGIKVFDIM 78
++SG + E +FD M
Sbjct: 250 GYTHSGRMREASSLFDAM 267
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A R+F + D+NVV W+ M+ + +G EA F+ + H N V++ +L
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPH-----KNVVSWTVMLG 156
Query: 61 ACSYSGLIEEGIKVFDIM 78
G +++ K+FD+M
Sbjct: 157 GLLQEGRVDDARKLFDMM 174
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +NVV WS MI + A+HG+ ++L F + + +PN VTF+ +L+
Sbjct: 398 LDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQ-ENVEPNEVTFVGVLY 456
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
CS+SGL+EEG K+F M ++ + +EHYG VDL E+ P
Sbjct: 457 GCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNV 516
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
+WG+L+ ACR+H +++GEL AK L+P +D
Sbjct: 517 VIWGSLMSACRVHGELELGELAAKRILKLEPDHD 550
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA IF K++V W+ MI+++A +EAL F + CS KP+ VT LS++
Sbjct: 297 LDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMC-CSGIKPDVVTMLSVIS 355
Query: 61 ACSYSGLIEEG 71
AC G +++
Sbjct: 356 ACVNLGTLDKA 366
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
++DA +IF ++N+++W+ MI+++ +HG A+E F + D K P+++TFL++
Sbjct: 513 VEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELF---MRMKDEKIIPDHITFLAL 569
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGET 103
L+ACS+SGL+ EG +IM ++QL+ EHY VDLL E
Sbjct: 570 LYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEP 629
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
P VW ALLGACRIH N +IGE+ A+ LD N Y
Sbjct: 630 TPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNY 668
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A IFG + K++V W+ M+ +G EALE FY + +D KP+ V+ +SI+
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFY-DLQNADLKPDQVSIISIIV 269
Query: 61 ACSYSGLIEEGIKV 74
A G + G ++
Sbjct: 270 ASGRLGYLLNGKEI 283
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A RIF I K+VV W+ MI+ + +G +ALE F + + +P+ VT +SIL
Sbjct: 412 IDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE-TGLEPDYVTLVSILS 470
Query: 61 A-CSYSGL 67
A CS S L
Sbjct: 471 AVCSLSTL 478
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+ IF + K+VV+W+ MI ++ HG EAL F+ + CS G +P+ VTF+ +L AC
Sbjct: 389 AKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDM--CSSGVQPDEVTFIGVLSAC 446
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
SYSG ++EG ++F+ M +Q++ +EHY VDLL E + V
Sbjct: 447 SYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIV 506
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR H + + E+ + L+PKN Y L
Sbjct: 507 WGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLL 544
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +++ + W+ +IA A+HG +L+ F ++ + P ++TF ++L
Sbjct: 302 IDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVE-AGLTPRDITFTAVLS 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+E G ++F+ M D +++ LEHYG VDLL E E +
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N +IGE V K L P++ YY L
Sbjct: 421 PVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLL 460
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + +KN+V WS MI+ +A + +A+E F V+ + N +S++
Sbjct: 201 VESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK-VLQSQGVRANETVMVSVIS 259
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETEPYVW 108
+C++ G +E G + D +V + + LNL VD+ A G + VW
Sbjct: 260 SCAHLGALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVW 307
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + KN V W+ MI+ + +HG +EAL F +++ S P VTFL +L+AC
Sbjct: 473 EARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLN-SGIAPTPVTFLCVLYAC 531
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL++EG ++F+ M+H + + +++HY VD+L + P V
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSV 591
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACRIH + + V++ F LDP N Y+ L
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLL 629
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F +K++ W+ MI+ + +G +A+ F + S+ PN VT IL
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR-EMQNSEFSPNPVTITCILS 428
Query: 61 ACSYSGLIEEGIKVFDIM 78
AC+ G + G V D++
Sbjct: 429 ACAQLGALSLGKWVHDLV 446
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +KN++ W+ M+A + +HG+ R+A+ A + + S P+ +F +IL+ACS
Sbjct: 552 ARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAI-ALFEQMRVSGIAPDAASFSAILYACS 610
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-ATG--------------ETEPYVW 108
+SGL +EG + FD M + +++ L+HY VDLL TG E + +W
Sbjct: 611 HSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL CRIH NVK+ E VA+ F L+P+N YY L
Sbjct: 671 VSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLL 707
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A+ IF G++ K+++ W+ +I ++ + EA F ++ +PN VT IL
Sbjct: 449 MEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL--QLRPNAVTMTCILP 506
Query: 61 ACSYSGLIEEG 71
A + +E G
Sbjct: 507 AAASLSSLERG 517
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A R+F + ++NV+ W+ MI A HG LE F +I +G KPN VT+++IL
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE--EGVKPNEVTYVAIL 582
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
ACS+ GL+ EG + F+ M D ++ +EHY VDLL T P+
Sbjct: 583 SACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQAD 642
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LGACR+H N ++G+L A+ LDP A Y L
Sbjct: 643 VLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A ++F G+ K++ W+ MI A+HGQ +A E F + SDG +PN +TF+ IL AC
Sbjct: 416 ARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM--SSDGIEPNEITFVGILSAC 473
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YV 107
++GL++ G + F MV D+++ +HYG +DLL E +P +
Sbjct: 474 KHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAI 533
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGACR H V++GELVA+ F L+P N Y L
Sbjct: 534 WGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLL 571
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + K+VV W+ MIA +A G+ +EAL F + ++ PN T +S+L
Sbjct: 211 MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE-DMRKANVPPNESTIVSVLS 269
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---ETEPYVWGALLGACRI 117
AC+ S ++ G + D L NL+ +D+ + +T ++ +L I
Sbjct: 270 ACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI 328
Query: 118 HHNVKIG 124
NV IG
Sbjct: 329 SWNVMIG 335
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F +++++V+ W+ MI + +EAL F ++ S +P +TFLSIL
Sbjct: 312 LQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREML-ASGVEPTEITFLSILP 370
Query: 61 ACSYSGLIEEG 71
+C++ G I+ G
Sbjct: 371 SCAHLGAIDLG 381
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +D++VV+WS MI + +HG+ REA+ + Y + PN+VTFL +L
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI-SLYRAMERGGVHPNDVTFLGLLM 432
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC++SG++ EG F++M D +++ +HY +DLL +P
Sbjct: 433 ACNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGV 491
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC+ H +V++GE A+ F +DP N +Y L
Sbjct: 492 TVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + N+++W+ MI+ +A +G REA++ F+ +I+ D +P+ ++ S + AC+
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN-KDVRPDTISITSAISACA 334
Query: 64 YSGLIEEGIKVFD 76
G +E+ +++
Sbjct: 335 QVGSLEQARSMYE 347
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NV+ W+ MI A HG LE F +I KPN VT+++IL
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE-EGVKPNEVTYVAILS 583
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ GL+ EG + F+ M D ++ +EHY VDLL T P+
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV 643
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LGACR+H N ++G+L A+ LDP A Y L
Sbjct: 644 LVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+E++F + + N+V W+ MI+ + +HG+ EAL F + +C +PN VT +IL
Sbjct: 260 LHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGF-QPNCVTITAILA 318
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
+CS+SGLIE+G K+F + D+ + + EHY VDLL
Sbjct: 319 SCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNMKSAATA 378
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL C +H N++IGE+ A F L+P+N + Y +L
Sbjct: 379 SVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIAL 418
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 17/154 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF I +K+V W+ MI A HG +ALE F ++ ++ KPN+VTF+S+L ACS+SG
Sbjct: 418 IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQ--AETKPNDVTFVSVLAACSHSG 475
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L++EG+K+F M + ++ +EHYG VDLL E +WGA+
Sbjct: 476 LVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAV 535
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L ACR+H N+++ E + L+P+ + Y L
Sbjct: 536 LSACRMHRNMELAERALMELLKLEPEKEGGYILL 569
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F I DK+VV+WS M+ + +HGQ RE++ F+ + + PN+VTF+ +L
Sbjct: 426 VDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFH-AMRQAGVSPNDVTFVGLLT 484
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC SGL+EEG +F M D+ ++ +HY VDLL EP
Sbjct: 485 ACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGV 543
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC+IH +V +GE A+ F LDP N +Y L
Sbjct: 544 SVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQL 583
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A +FG ++D+ +V W+ +I+ +A +GQ EAL F + ++ +P+ + +S+L A
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFS-EMRKTNVRPDWIALVSVLRA 283
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F D +V +W+ ++ ++ HG A+E Y + + P+ +F +L ACS
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIE-MYARMQVACVSPDGFSFPCVLKACS 184
Query: 64 YSGLIEEGIKVF-DIMVHDFQLDLNLEH 90
+E G +V I H F+ D+ +++
Sbjct: 185 ALPALEMGRRVHGQIFRHGFESDVFVQN 212
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A F + + +++ W+ MI+ + +G EA+E F L + + +P+++T S + AC+
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRL-MKSKNIRPDSITVTSSIAACA 386
Query: 64 YSGLIE 69
G +E
Sbjct: 387 QIGSLE 392
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ +F I +K++ +WS MI +A+HG +EAL F+ + + KP+ + + S+L
Sbjct: 378 IKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLL 437
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE---------------TEP 105
ACS+SGLIE+G+K F M DF ++ +++HY VDLL +
Sbjct: 438 ACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQA 497
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW L AC HHN+++GE AK+ F L+P++ +
Sbjct: 498 RVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNF 534
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+F + +K+V +W+ MI+ +A G EAL F +++ + +PN +T ++L AC
Sbjct: 279 SARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLR-TASRPNELTLATVLSAC 337
Query: 63 SYSGLIEEG 71
+ G + G
Sbjct: 338 AEMGSLRMG 346
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFAC 62
A +IF K++V+W+ +I +A HG EAL+ F+ + CS G + VTF+ +L AC
Sbjct: 384 ARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEM--CSSGMATDGVTFVGVLSAC 441
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
SY+G ++EG+++F+ M + ++ EHY VDLL E + +
Sbjct: 442 SYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAII 501
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR H N+ + E+ AK L+PKN Y L
Sbjct: 502 WGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILL 539
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + +NV+ W+ MI+ + +GQ A + F ++ + N V++ ++L
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM-----PEKNEVSWTAMLM 241
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ G IEE ++FD M
Sbjct: 242 GYTQGGRIEEASELFDAM 259
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
++ A R+F + DK +V W+ M+A + + + REA F D P N V++ +
Sbjct: 32 IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF-------DKMPERNTVSWNGL 84
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + ++ E K FD M
Sbjct: 85 ISGYVKNRMVSEARKAFDTM 104
>gi|242086060|ref|XP_002443455.1| hypothetical protein SORBIDRAFT_08g019750 [Sorghum bicolor]
gi|241944148|gb|EES17293.1| hypothetical protein SORBIDRAFT_08g019750 [Sorghum bicolor]
Length = 565
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AER F I+ K+ + WS MI ++ IHG R+AL F ++ +PN VTFLS+L AC
Sbjct: 370 AERCFSSILHKDSISWSSMIETYTIHGDGRKALALFRQMLE-EGARPNGVTFLSLLSACG 428
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
+SGL+ E ++FD M F + L HY VD+L T + + +W
Sbjct: 429 HSGLVSEARELFDCMTRKFGIAPELGHYTCMVDVLGRSGNLEEAVQLINGMTVKPDGRIW 488
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL +C+ H N K+ L A+ L+P N Y+
Sbjct: 489 GALLASCKTHSNSKLANLAARKLMELEPNNVGYH 522
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 16/156 (10%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
+R+F K++V+W+ +IA +A HG +ALE F+ + S P+ +TF+ +L AC Y
Sbjct: 385 KRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMF-SSGAAPDEITFIGVLSACGY 443
Query: 65 SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWG 109
+G ++EG+++F+ M +Q+D EHY VDLL E + VWG
Sbjct: 444 TGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 503
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACR H N+ + E+ AK L+P + Y L
Sbjct: 504 ALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILL 539
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A IF + +NVV W+ MI+ +A++ + A + F ++ N VT+ ++L
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM-----PDKNEVTWTAMLK 241
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ SG I E ++F M
Sbjct: 242 GYTRSGRINEAAELFKAM 259
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 22/161 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD----GKPNNVTFL 56
+D+A+R+F + KN W+ MI++ A HG+ +EAL F H SD +PN++TF+
Sbjct: 376 LDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQ---HMSDEGGGARPNDITFV 432
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
+L AC ++GL++EG ++FD+M F L +EHY VDLLA
Sbjct: 433 GLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPE 492
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ + GALLGACR NV IGE V + +DP N Y
Sbjct: 493 KPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNY 533
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A ++F I ++ V W+ MIA +A G REA+E F + +P+ ++ +S+L AC
Sbjct: 175 SARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGAC 234
Query: 63 SYSGLIEEG 71
G +E G
Sbjct: 235 GELGDLELG 243
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
++ A RIF G+ ++V+ W+ +I+ +A +G EA+ F+ + C N +T ++L
Sbjct: 275 LESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTA--NKITLTAVL 332
Query: 60 FACSYSGLIEEGIKV 74
AC+ G ++ G ++
Sbjct: 333 SACATIGALDLGKQI 347
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A R+F + +KN V W+ +IA++ HG+ +++L F+ ++ DG +P++VTFL+I+
Sbjct: 602 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGML--GDGIQPDHVTFLAII 659
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
AC ++G ++EGI F M + + +EHY VDL + P+
Sbjct: 660 SACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPD 719
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGACR+H NV++ E+ +++ F LDP+N YY L
Sbjct: 720 AGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLL 760
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + ++V W+GMI+ + +G EA F+ +I + KP+++TF S L
Sbjct: 301 DARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMIS-ARMKPDSITFSSFLPLL 359
Query: 63 SYSGLIEEGIKV 74
S + +G ++
Sbjct: 360 SEGATLRQGKEI 371
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A + F GI DK+ V W+ MI S + +G+ EA++ F + + K + V+ + L
Sbjct: 501 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR-QMGMAGTKYDCVSISAALS 559
Query: 61 ACSYSGLIEEGIKVFDIMVHD-FQLDLNLE 89
AC+ + G ++ M+ F+ DL E
Sbjct: 560 ACANLPALHYGKEIHAFMMRGAFRSDLFAE 589
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 17/154 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF I +K+V W+ MI A HG +ALE F ++ ++ KPN+VTF+S+L ACS+SG
Sbjct: 353 IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQ--AETKPNDVTFVSVLAACSHSG 410
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L++EG+K+F M + ++ +EHYG VDLL E +WGA+
Sbjct: 411 LVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAV 470
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L ACR+H N+++ E + L+P+ + Y L
Sbjct: 471 LSACRMHRNMELAERALMELLKLEPEKEGGYILL 504
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A R+F + +KN V W+ +IA++ HG+ +++L F+ ++ DG +P++VTFL+I+
Sbjct: 503 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGML--GDGIQPDHVTFLAII 560
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
AC ++G ++EGI F M + + +EHY VDL + P+
Sbjct: 561 SACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPD 620
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGACR+H NV++ E+ +++ F LDP+N YY L
Sbjct: 621 AGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLL 661
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A + F GI DK+ V W+ MI S + +G+ EA++ F + + K + V+ + L
Sbjct: 402 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR-QMGMAGTKYDCVSISAALS 460
Query: 61 ACSYSGLIEEGIKVFDIMVHD-FQLDLNLE 89
AC+ + G ++ M+ F+ DL E
Sbjct: 461 ACANLPALHYGKEIHAFMMRGAFRSDLFAE 490
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+ +F + +KNVV WS +I+ + +HG +EAL + ++ KPN VTF+SIL
Sbjct: 258 VDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGV-KPNCVTFVSILS 316
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV------------ 107
+CS+SGL+ +G ++F+ M ++ +HY VDLL G E V
Sbjct: 317 SCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPGA 376
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC IH+NV +GE+ A F L+ N + Y +L
Sbjct: 377 SLWGALLSACAIHNNVDVGEVAAYRLFELEEDNASNYVTL 416
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F + +++VV W+ M+ + HG E ++ F + C KP++VT L++L S
Sbjct: 293 SRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM--CDKVKPDSVTLLAVLLGYS 350
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY-----VW 108
+ GL++EG+ +FD +V + LN +HYG +DLL +G+ E P+ +W
Sbjct: 351 HGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIW 410
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GE VA+ F ++P+N Y L
Sbjct: 411 GSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVIL 447
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA + G+ ++NVV W+ MI+ ++ + + EA + F +++ + +PN T S+L
Sbjct: 86 LEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLR-AGCEPNEFTLASVLT 144
Query: 61 ACSYS-GLIEEGIKVFDIMVHDFQLDLNLE 89
+C+ S G+ + IK VH F + N E
Sbjct: 145 SCTGSQGIHQHQIK----QVHAFAIKKNFE 170
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + KNV W+ MI +A HG+ +EALE F + KP+ +TF+ L
Sbjct: 660 IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELF-CQMQQEGVKPDWITFVGALS 718
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GLI+EG+ F+ M DF ++ +EHYG VDL + +
Sbjct: 719 ACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDS 777
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC++H +V++ E VA+ LDP +D Y L
Sbjct: 778 RLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVIL 817
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + +NVV W+ MIA A HG+ EA F +I S +PN VTF+SIL
Sbjct: 357 MEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE-SGIEPNRVTFMSILG 415
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +++G ++ D ++
Sbjct: 416 ACSRPSALKQGRQIHDRII 434
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F + ++++ W+ MI A H Q ++A F V+ +P+ V F+S+L
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQ-VMEEEGVQPDKVAFVSLLK 314
Query: 61 ACSYSGLIEEGIKV 74
AC++ +E+G +V
Sbjct: 315 ACNHPEALEQGKRV 328
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F I +NVV W+ MI ++ H + A+ F ++ +G KP++ TF SIL
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALL--KEGIKPDSSTFTSILNV 517
Query: 62 CSYSGLIEEGIKVFDIMVH-DFQLDLNLEHYGITV 95
C +E G V +++ F+ DL++ + +++
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFESDLHIRNALVSM 552
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++++V W+ +IA HG+ + A + F ++ S KP+ +TF +L AC+
Sbjct: 562 AMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE-SGVKPDQITFTGLLNACA 620
Query: 64 YSGLIEEGIKV 74
+ EG ++
Sbjct: 621 SPEALTEGRRL 631
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
+ A++IF + DK+V W+ ++ + H + EA ++ DG KP+ TF+ +L
Sbjct: 156 NSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQ--DGVKPDKYTFVYMLN 213
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ + +++G ++F ++++
Sbjct: 214 ACADAKNVDKGGELFSLILN 233
>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19191, mitochondrial; Flags: Precursor
gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF +K VV W+ MIA +A++G EAL+ F +I D KPN++TFL++L AC
Sbjct: 411 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL-DYKPNHITFLAVLQAC 469
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
++SG +E+G + F IM + + L+HY VDLL + + + +
Sbjct: 470 AHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGI 529
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC+IH NVKI E A+ F+L+P+ A Y +
Sbjct: 530 WGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEM 567
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + V W+ MI+ +A G EAL F+ +I S KP+ VT LS++ C
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK-SGEKPDLVTLLSLISGCG 368
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 369 KFGSLETG 376
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F I +K + W+ MI AI G +EA+ F + G P+ +TF ++L
Sbjct: 592 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-PDAITFTALLS 650
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC SGLI EG K FD M+ D+++ LEHY VDLL + +
Sbjct: 651 ACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDA 710
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALLG+CRIH N+K E AK+ F L+P N A Y
Sbjct: 711 TIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANY 747
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++N W+ MI+S+A G +A FY + SD KP+ VT+ +L
Sbjct: 288 ARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY-ELESSDMKPDIVTWNCLLSGHF 346
Query: 64 YSGLIEEGIKVFDIM 78
G EE + + M
Sbjct: 347 LHGYKEEVLNILQRM 361
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +N+V W+ MI A+HG EALE F ++ PN VTFL +L
Sbjct: 203 VEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLC 262
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++EEG + FDIM D+ + ++HYG VD+L E+
Sbjct: 263 ACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNS 322
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL ACR+H N+++ E V + L+P + + Y L
Sbjct: 323 IVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLL 362
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +V W+ +I + G+ +EA+E F+ ++ S KP++ TF+ L
Sbjct: 102 IEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQ-SGLKPDDATFVVTLS 160
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ G ++ G +V + H
Sbjct: 161 ACAALGELDIGRRVHSCIDH 180
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++V W+ MI + HG + ALE F + KPN VTFL +L ACS
Sbjct: 532 ARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFE-KMKKEVIKPNEVTFLCVLSACS 590
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EP--YVW 108
+SGL+EEG + F M D+ L+ ++HYG VDLL EP V+
Sbjct: 591 HSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGACRIH NV++GE A F LDP + Y+ L
Sbjct: 651 GAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLL 687
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ +E IF I D++ + W+ M+A +A+H REA++ F L++ + ++VTF +L
Sbjct: 393 LNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLS 451
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG K F+IM ++++ L+HY VDLL E
Sbjct: 452 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 511
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ NV++G+ VA+ LDP + Y L
Sbjct: 512 GVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 551
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA+R+F + ++++V W+ +++ + G L AF + S +PN VT LS++ A
Sbjct: 191 EDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSA 250
Query: 62 CSYSGLIEEGIKVFDIMV 79
C+ G ++EG + ++V
Sbjct: 251 CAXMGALDEGKSLHGVVV 268
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +KN++ W+ MIA + +HG+ R+A+ A + + S +P+ +F +IL+ACS
Sbjct: 340 ARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAI-ALFEQMKGSGIQPDAGSFSAILYACS 398
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL +EG + F+ M ++ +++ L+HY VDLL TG ET P +W
Sbjct: 399 HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIW 458
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL CRIH NVK+ E VA+ F L+P+N YY L
Sbjct: 459 VSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLL 495
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F I +K + W+ MI AI G +EA+ F + G P+ +TF ++L
Sbjct: 812 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-PDAITFTALLS 870
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC SGLI EG K FD M+ D+++ LEHY VDLL + +
Sbjct: 871 ACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDA 930
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALLG+CRIH N+K E AK+ F L+P N A Y
Sbjct: 931 TIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANY 967
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+DA R+ + I ++V W+GMI+ +A+ G +EAL AF+ + PN+ +
Sbjct: 708 EDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEAL-AFFAQMQQEGVMPNSASITC 766
Query: 58 ILFACSYSGLIEEGIKV 74
+L AC+ L+++G ++
Sbjct: 767 LLRACASLSLLQKGKEI 783
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ E++F I +KNV W+ +I+ +A++GQ AL+AF ++ + KP+ VTFL +L AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM-ENFKPDEVTFLGVLCAC 301
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+ GL+ EG F M F L +EHYG VDLL E +P +
Sbjct: 302 CHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPII 361
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL ACR+H N K+GE + K L+P N Y L
Sbjct: 362 WRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLL 399
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA ++F + ++N V W+ +I + + + +A++AF ++ +DG +P+ T + +L
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML--ADGAQPSERTVVVVL 197
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
ACS+ G +G + + + H+ +L LN+
Sbjct: 198 SACSHLGAFNQGKWIHEFIYHN-RLRLNV 225
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A F + +++VV W+ MIA +A HG +EALE F + S KP+++T + +L
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTST-KPDDITLVGVLA 561
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M DF + EHY +DLL E +
Sbjct: 562 ACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDS 621
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 622 TMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLL 661
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+++A+R+F + DKN V W+ M+A++ EA E F D P N ++ ++
Sbjct: 340 LEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELF-------DAMPCRNVASWNTM 392
Query: 59 LFACSYSGLIEEGIKVFDIM 78
L + +G+++E +F +M
Sbjct: 393 LTGYAQAGMLDEARAIFGMM 412
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+++A+++F + ++VV W+ M++ +A G EA F D P + T+ +I
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF-------DVAPIRDVFTWTAI 330
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 331 VSGYAQNGMLEEAKRVFDAM 350
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IFG + K+ V W+ M+A+++ G E L+ F + C + N F +L
Sbjct: 402 LDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWV-NRSAFACVLS 460
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ +E G+++ ++
Sbjct: 461 TCADIAALECGMQLHSRLI 479
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ E++F I +KNV W+ +I+ +A++GQ AL+AF ++ + KP+ VTFL +L AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM-ENFKPDEVTFLGVLCAC 301
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+ GL+ EG F M F L +EHYG VDLL E +P +
Sbjct: 302 CHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPII 361
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL ACR+H N K+GE + K L+P N Y L
Sbjct: 362 WRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLL 399
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA ++F + ++N V W+ +I + + + +A++AF ++ +DG +P+ T + +L
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML--ADGAQPSERTVVVVL 197
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
ACS+ G +G + + + H+ +L LN+
Sbjct: 198 SACSHLGAFNQGKWIHEFIYHN-RLRLNV 225
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF +K VV W+ MIA +A++G EAL+ F +I D KPN++TFL++L AC
Sbjct: 1017 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL-DYKPNHITFLAVLQAC 1075
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
++SG +E+G + F IM + + L+HY VDLL + + + +
Sbjct: 1076 AHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGI 1135
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC+IH NVKI E A+ F+L+P+ A Y +
Sbjct: 1136 WGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEM 1173
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + V W+ MI+ +A G EAL F+ +I + KP+ VT LS++ C
Sbjct: 916 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGE-KPDLVTLLSLISGCG 974
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 975 KFGSLETG 982
>gi|125524834|gb|EAY72948.1| hypothetical protein OsI_00820 [Oryza sativa Indica Group]
Length = 370
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +KN++ W+ MIA + +HG+ R+A+ A + + S +P+ +F +IL+ACS
Sbjct: 52 ARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAI-ALFEQMKGSGIQPDAGSFSAILYACS 110
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEP-----YVW 108
+SGL +EG + F+ M ++ +++ L+HY VDLL TG ET P +W
Sbjct: 111 HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIW 170
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL CRIH NVK+ E VA+ F L+P+N YY L
Sbjct: 171 VSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLL 207
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +N+ W+ MI A++G ER+AL + + +PN++TF+ +L AC+
Sbjct: 299 AIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLW-KMQMVGVQPNDITFIGLLSACT 357
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+ EG ++FD M+ DF + +HYG+ VDL+ E P +W
Sbjct: 358 HSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFVKSMPVEPHPGLW 417
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GAL AC++H V++GE VAK L+P++ + Y L
Sbjct: 418 GALASACKMHGKVELGEEVAKKLIELEPRHGSRYILL 454
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + +N WS MI+ + G+ EAL F ++H S PN +S++
Sbjct: 193 LTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVSVVS 252
Query: 61 ACSYSGLIEEG 71
AC+ +E G
Sbjct: 253 ACAQMRSLEHG 263
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +N+V W+ MI A+HG EALE F ++ PN VTFL +L
Sbjct: 303 VEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLC 362
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++EEG + FDIM D+ + ++HYG VD+L E+
Sbjct: 363 ACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNS 422
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL ACR+H N+++ E V + L+P + + Y L
Sbjct: 423 IVWRTLLAACRVHGNLELAEQVRQXLLELEPDHSSDYVLL 462
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +V W+ +I + G+ +EA+E F+ ++ S KP++ TF+ L
Sbjct: 202 IEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQ-SGLKPDDATFVVTLS 260
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ G ++ G +V + H
Sbjct: 261 ACAALGELDIGRRVHSCIDH 280
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +D++VV+WS MI + +HG+ REA+ + Y + PN+VTFL +L
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI-SLYRAMERGGVHPNDVTFLGLLM 432
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC++SG++ EG F+ M D +++ +HY +DLL +P
Sbjct: 433 ACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGV 491
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC+ H +V++GE A+ F +DP N +Y L
Sbjct: 492 TVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + N+++W+ MI+ +A +G REA++ F+ +I+ D +P+ ++ S + AC+
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN-KDVRPDTISITSAISACA 334
Query: 64 YSGLIEEGIKVFD 76
G +E+ +++
Sbjct: 335 QVGSLEQARSMYE 347
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F + +KN V W+ MI + +HG EAL+ + ++H P+ VTFLS+L+
Sbjct: 462 ISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGY-NPSAVTFLSVLY 520
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS++GL+ EG ++F MV+ ++++ +EHY VD+L +G+ E P
Sbjct: 521 ACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGP 580
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGAC IH + I L ++ F LDP + YY L
Sbjct: 581 AVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLL 620
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F +K VV W+ MI+ + +G A+ F ++ ++ PN VT +IL
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMK-TEFTPNAVTITTILS 419
Query: 61 ACSYSGLIEEG 71
AC+ G + G
Sbjct: 420 ACAQLGSLSFG 430
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F +++++VV W+ M+ + HG E + F +H + KP++VT L++L CS
Sbjct: 298 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK-DLH-KEVKPDSVTLLAVLSGCS 355
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL++EG+ +FD +V + L+ HYG +DLL E+ P +W
Sbjct: 356 HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 415
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GELVA+ ++P+N Y L
Sbjct: 416 GSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 452
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA + + +++VV W+ MI+ ++ + EAL+ F ++ + PN T ++L
Sbjct: 93 LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR-AGCIPNEYTLATVLT 151
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+CS I +G +V ++V
Sbjct: 152 SCSGPQSIYQGKQVHSLLV 170
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF + +KNVV W+ MI+ + +HG+ EAL+ + ++ P + TFLS+L+AC
Sbjct: 467 EARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDACI-LPTSSTFLSVLYAC 525
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPY 106
S+ GL++EG KVF +M +++++ +EH VDLL P
Sbjct: 526 SHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPG 585
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC +H N + +L ++ F LD +N YY L
Sbjct: 586 VWGALLSACMVHKNSDLAKLASQKLFELDSENAGYYVLL 624
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A IF + +K + W+ MI+ +A +G A+E F L+ + +PN T S L
Sbjct: 364 MESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQEL-NVQPNPTTISSTLS 422
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC+ G + G V I+ + L+LN+ +D+ A
Sbjct: 423 ACAQLGALSLGTWVHRIIAKE-NLELNVYVMTALIDMYA 460
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F +D++VV+WS MI + +HGQ REA+ + Y + PN+VTFL +L AC+
Sbjct: 377 ARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAI-SLYRAMERDGVHPNDVTFLGLLIACN 435
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+SG++ EG F+ M D +++ +HY +DLL +P VW
Sbjct: 436 HSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+ H +V++G+ A+ F +DP N +Y L
Sbjct: 495 GALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQL 531
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A F + ++++V W+ MIA +A HG +EALE F + S KP+++T + +L
Sbjct: 383 MEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTST-KPDDITLVGVLA 441
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+GI F M DF + EHY +DLL E +
Sbjct: 442 ACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDS 501
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA RIH N ++G A+ F L+P+N Y L
Sbjct: 502 TMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLL 541
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+++A+R+F + +KN V W+ M+A++ EA E F D P N ++ ++
Sbjct: 268 LEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELF-------DAMPCRNVASWNTM 320
Query: 59 LFACSYSGLIEEGIKVFDIM 78
L + +G+++E +FD+M
Sbjct: 321 LTGYAQAGMLDEARAIFDMM 340
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+++A+++F + ++VV W+ M++ HA G EA F D P + T+ ++
Sbjct: 206 IEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLF-------DVAPIRDVFTWTAV 258
Query: 59 LFACSYSGLIEEGIKVFDIM 78
+ + +G++EE +VFD M
Sbjct: 259 VSGYAQNGMLEEAKRVFDAM 278
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F +++++VV W+ M+ + HG E + F +H + KP++VT L++L CS
Sbjct: 266 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK-DLH-KEVKPDSVTLLAVLSGCS 323
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL++EG+ +FD +V + L+ HYG +DLL E+ P +W
Sbjct: 324 HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 383
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GELVA+ ++P+N Y L
Sbjct: 384 GSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 420
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA + + +++VV W+ MI+ ++ + EAL+ F ++ + PN T ++L
Sbjct: 61 LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR-AGCIPNEYTLATVLT 119
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+CS I +G +V ++V
Sbjct: 120 SCSGPQSIYQGKQVHSLLV 138
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++ + W+ +IA A+HG +ALE ++ + + P +TF ++L
Sbjct: 296 IDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALE-YFSRMEKAGLTPREITFTAVLS 354
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV--------- 107
ACS+ GL+E G+++F+ M D++++ LEHYG VDLL E E +V
Sbjct: 355 ACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNA 414
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACRIH N +I E K L P++ YY L
Sbjct: 415 PIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLL 454
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
A ++F + +KN+V WS MI+ +A + +A+E ++L+ S+G N +S++ +
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ--SEGVHANETVMVSVIAS 254
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETEPYVW 108
C++ G +E G + D ++ + ++ +NL VD+ A G + +W
Sbjct: 255 CAHLGALELGERAHDYILRN-KMTVNLILGTALVDMYARCGSIDKAIW 301
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +E++F + K+ V W+ M++ +A+HG A+ F L+ S + ++V+F+S+L
Sbjct: 328 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE-SQVQIDSVSFVSVLS 386
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL+EEG K+F M + + +LEHY VDLL E +
Sbjct: 387 ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 446
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG+CR+H NVK+GE+ L+P+N A++ L
Sbjct: 447 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 486
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
V W+ +IA++ +G +EA+ +F+ + + PN+VTF+S+L A +Y EG+
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQ-MRLENFHPNSVTFVSVLPAAAYLAAFREGM 297
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F +++++VV W+ M+ + HG E + F +H + KP++VT L++L CS
Sbjct: 266 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK-DLH-KEVKPDSVTLLAVLSGCS 323
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL++EG+ +FD +V + L+ HYG +DLL E+ P +W
Sbjct: 324 HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 383
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GELVA+ ++P+N Y L
Sbjct: 384 GSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 420
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA + + +++VV W+ MI+ ++ + EAL+ F ++ + PN T ++L
Sbjct: 61 LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR-AGCIPNEYTLATVLT 119
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+CS I +G +V ++V
Sbjct: 120 SCSGPQSIYQGKQVHSLLV 138
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R F + +KNV+ W+ +I + HG EA+ A Y + KPN++TFLS+LF
Sbjct: 392 IEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAI-ALYKKMEYEGLKPNDITFLSLLF 450
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL EG + F+ M+ + + EHY +DL A G +
Sbjct: 451 ACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNS 510
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGAC I+ ++ +GE+ A +DP+N A Y L
Sbjct: 511 SLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVL 550
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F + ++NVV W+ I+ +A +G ++AL F + + + N T+ S+L AC
Sbjct: 90 NARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGR-AGVRANQFTYGSVLRAC 148
Query: 63 SYSGLIEEGIKV 74
+ +E G+++
Sbjct: 149 TGLRCLERGMQI 160
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSIL 59
++ AE++F ++++V W+ MI + HG ++ALE F ++ + G P ++VTF+ +L
Sbjct: 557 IESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN--QGLPLDDVTFIGVL 614
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL+EEG K F+IM+ D+ +D +EHY VDL +
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
P +W LL ACR+H N+++G+L A+ L P NDA
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSLQP-NDA 709
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
++ R+F I K++V WS M+ A +A+E F ++ +G KPN TF S++ A
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV--KEGVKPNEYTFSSVINA 514
Query: 62 CSYS-GLIEEGIKV 74
CS S +E G ++
Sbjct: 515 CSSSAATVEHGKQI 528
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+D IF + KNVV W+ +++ +A +G E + + PN TF ++L A
Sbjct: 156 EDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ-MQMEGVNPNGFTFATVLGA 214
Query: 62 CSYSGLIEEGIKVFDIMVHD 81
+ +IE G++V ++V +
Sbjct: 215 LADESIIEGGVQVHAMIVKN 234
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +E++F + K+ V W+ M++ +A+HG A+ F L+ S + ++V+F+S+L
Sbjct: 684 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE-SQVQIDSVSFVSVLS 742
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL+EEG K+F M + + +LEHY VDLL E +
Sbjct: 743 ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG+CR+H NVK+GE+ L+P+N A++ L
Sbjct: 803 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A+++F G+ +++V WS +IA+ G EAL F + KPN VT +SIL A
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ-EMQNQKMKPNRVTLMSILPA 439
Query: 62 CSYSGLIEEGIKV 74
C+ L++ G +
Sbjct: 440 CADLSLLKLGKSI 452
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MDDAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ AE +F K+ V W+ +IA++ +G +EA+ +F+ + + PN+VTF+S+L
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFH-QMRLENFHPNSVTFVSVL 640
Query: 60 FACSYSGLIEEGI 72
A +Y EG+
Sbjct: 641 PAAAYLAAFREGM 653
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +F + + ++W+ MI ++ Q EALE +Y ++ +P+ TF +L A
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKA 138
Query: 62 CSYSGLIEEGI 72
C+ + ++EG+
Sbjct: 139 CTGALNLQEGV 149
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F + +KN+ W+ +I A+HG EAL A + + KPN VTF+S+L
Sbjct: 294 LDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEAL-AMFDKMEREKIKPNGVTFVSVLS 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
AC+++GLIEEG K F M D + +EHYG VDLL+ T + EP
Sbjct: 353 ACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNA 412
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL C++H N++I ++ A L+P N YYT L
Sbjct: 413 VIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLL 452
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
+D AE +F + ++++ W+ MI ++ + + REAL F + H P+ VT +++
Sbjct: 193 VDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGIS--PDEVTMATVI 250
Query: 60 FACSYSGLIEEGIKV-FDIMVHDFQLDL 86
AC++ G ++ G ++ + IM H F LD+
Sbjct: 251 SACAHLGALDLGKEIHYYIMQHGFNLDV 278
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K V W+ MI +HG+ +A+E F+ + +PN +T L +L
Sbjct: 344 LDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFF-KMQKQKFRPNGITLLGVLS 402
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETE-----------P 105
AC++SG+++EG+++F+ M + ++ +EHYG VDLL GE E
Sbjct: 403 ACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSA 462
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR H +V++GE V K L+P+N Y L
Sbjct: 463 AVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALL 502
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KN + WS MI + G +EALE F V+ + +P S+L
Sbjct: 243 IEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFN-VMQREEIRPRKFVLSSVLA 301
Query: 61 ACSYSGLIEEG 71
AC+ G +++G
Sbjct: 302 ACANLGALDQG 312
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ +E IF I D++ + W+ M+A +A+H REA++ F L++ + ++VTF +L
Sbjct: 373 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLS 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG K F+IM ++++ L+HY VDLL E
Sbjct: 432 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 491
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ NV++G+ VA+ LDP + Y L
Sbjct: 492 GVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 531
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA+R+F + +K++V W+ +++ + G L AF + S +PN VT LS++ A
Sbjct: 171 EDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSA 230
Query: 62 CSYSGLIEEGIKVFDIMV 79
C+ G ++EG + ++V
Sbjct: 231 CADMGALDEGKSLHGVVV 248
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F DK+VV+WS MI + +HGQ EA+ Y V+ + PN+VTF+ +L AC+
Sbjct: 410 ARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAIN-LYHVMKQAGVFPNDVTFIGLLTACN 468
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GET---------EP--YVW 108
+SGL++EG ++F M DF++ EHY VDLL GE EP VW
Sbjct: 469 HSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVW 527
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+I+ V +GE A F LDP N +Y L
Sbjct: 528 GALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQL 564
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ F + NV++W+ MI+ +A +G EA+ F+ +I + KP++VT S + A +
Sbjct: 309 AKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS-RNIKPDSVTVRSAVLASA 367
Query: 64 YSGLIE 69
G +E
Sbjct: 368 QVGSLE 373
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F G+ + +V W+ +I+ +A +G+ EAL F + + + KP+ + +SIL A +
Sbjct: 208 AKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRN-NGVKPDWIALVSILRAYT 266
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+E+G +H F + + LE
Sbjct: 267 DVDDLEQGRS-----IHGFVIKMGLE 287
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ +E IF I D++ + W+ M+A +A+H REA++ F L++ + ++VTF +L
Sbjct: 316 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLS 374
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG K F+IM ++++ L+HY VDLL E
Sbjct: 375 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 434
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ NV++G+ VA+ LDP + Y L
Sbjct: 435 GVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 474
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA+R+F + +K++V W+ +++ + G L AF + S +PN VT LS++ A
Sbjct: 114 EDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSA 173
Query: 62 CSYSGLIEEGIKVFDIMV 79
C+ G ++EG + ++V
Sbjct: 174 CADMGALDEGKSLHGVVV 191
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 18/160 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I K+V +W+ MI A HG +ALE F + D P++VTF+S+L
Sbjct: 349 IERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQE--DVSPDDVTFVSVLS 406
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++GIKVF M D+ ++ +EHYG VDLLA +
Sbjct: 407 ACSHSGLVDQGIKVFSSMT-DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSR 465
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+L AC+ +V++ E+ +++ +LDP+ + YT L
Sbjct: 466 SIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLL 505
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F DK V +WS MI A+H +A+E F +I C +P+ +T+++IL
Sbjct: 350 IDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGI-EPSEITYINILA 408
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++SGL++ G+++F+ MV + + ++HYG VDLL + +P
Sbjct: 409 ACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADP 468
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W ALL AC++H NV++GE V + ++P+ND Y
Sbjct: 469 AIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNY 505
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + +N+V WS +I + G +ALE F + + K + V ++L
Sbjct: 249 LSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFK-EMQVAKVKMDEVIVTTLLS 307
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLNLEHYGI-------TVDLL-----ATGETEPYV 107
AC+ G +++G + I H ++D +L I +D+ TG+ + +V
Sbjct: 308 ACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFV 367
Query: 108 WGALLGACRIHH-NVKIGELVAK 129
W +++G +H K EL AK
Sbjct: 368 WSSMIGGLAMHSFGEKAIELFAK 390
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + +NVV W+ MI+ A HG ++ALE F + KP+ VTF+++L
Sbjct: 382 IDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMT-AHGVKPDRVTFVAVLS 440
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++EG + M + ++ ++ H VDLL + +
Sbjct: 441 ACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDE 500
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLG+CR + NV++GELVAK+ LDPKN A Y L
Sbjct: 501 ATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLL 540
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + ++VV W+ MI + A HG+ EA + F L + KP+ + FLSIL
Sbjct: 281 IDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLF-LQMQTEGCKPDAIMFLSILN 339
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC+ +G +E K +H LD LE
Sbjct: 340 ACASAGALEWVKK-----IHRHALDSGLE 363
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A RIF +++ +++ W+ MI ++A G +EA L + KPN +T++SIL
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYR-LMLQMEQEGFKPNAITYVSILN 238
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC+ G ++ + VH LD LE
Sbjct: 239 ACASEGALK-----WVKRVHRHALDAGLE 262
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A +F ++ K+ W+ MIA + H +A+ F + C +G +PN T++ IL
Sbjct: 79 LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREM--CHEGVQPNAGTYMIIL 136
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC+ ++ G +V + H
Sbjct: 137 KACASLSALKWGKEVHACIRH 157
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 96/160 (60%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A R+F G+ ++V W+ +I+ +A +GQ EAL+ F L++ S +P+++TF+ +L
Sbjct: 374 IKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLK-SGTQPDHITFVGVLS 432
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G++ FD + L +HY +DLL+ E +
Sbjct: 433 ACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDK 492
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH N+K+ + A+ F ++P+N A YT+L
Sbjct: 493 FLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTL 532
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF +D++VV W+ MI + G+ E F ++ S PN TF +L AC
Sbjct: 275 EARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLK-SGIWPNEFTFSGVLNAC 333
Query: 63 SYSGLIEEGIKVFDIMVH 80
+ E G +V M
Sbjct: 334 ADHAAEELGKQVHGYMTR 351
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 16/155 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F + ++NVV W+ MI +HA+HGQ EA+ F + + P+ +TFL +L +C
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQ-LKGENIVPDQITFLGLLASC 489
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL------------ATG---ETEPYV 107
S+SGL+ EG + F M ++++ +EHY +DLL A G E +
Sbjct: 490 SHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAG 549
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL ACR+H NV+IG VA LDP + Y
Sbjct: 550 WGALLNACRMHGNVEIGACVADKLVELDPSDSGIY 584
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++F + +NVV WS MIA+++ Q EA+ F +I + P + T +S+L
Sbjct: 327 LESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMI-AAGVDPIDATLVSVLS 385
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC+ G ++ G +++ + ++ L + +D+ A
Sbjct: 386 ACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFA 424
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F + +++VV W+ ++ +A G EA F ++ +PN VT ++ +
Sbjct: 194 LDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVS 253
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
A GL+ F IM+H +
Sbjct: 254 AIGQMGLL-----AFGIMLHKY 270
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF + +K+ W+ MI+ A+HG ++A + F L + + KPN+VTF+ +L
Sbjct: 316 VQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCF-LEMEKAGVKPNHVTFVGLLS 374
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+E+G FD+M + ++ + HY VD+L+ + +
Sbjct: 375 ACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDV 434
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
YVWGALLG C++H N+K+GE VA L+P N A+Y +L
Sbjct: 435 YVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINL 474
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---KPNNVTFLSILF 60
A +F + +N++ W+ +I G +E+LE F+ + S KP+ +T S+L
Sbjct: 214 ALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLS 273
Query: 61 ACSYSGLIEEG 71
AC+ G I+ G
Sbjct: 274 ACALLGSIDHG 284
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 20/164 (12%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++ A +IF GI +K +VV+W +I+ + +HG AL+ F ++ S PN +TF
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVR-SGVTPNEITFT 529
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
S L ACS+SGL+EEG+ +F M+ ++ HY VDLL
Sbjct: 530 SALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPF 589
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
E VWGALL AC H NV++GE+ A F L+P+N Y L
Sbjct: 590 EPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLL 633
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+++F + +KNVV W+ MI +A +G +EAL F + S P VTF+ ILF
Sbjct: 500 VEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTS-SGILPTAVTFVGILF 558
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG +++MVH++ + ++EH VDLL EP
Sbjct: 559 ACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEP 618
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL AC +H N +G A+ L+P + YT+L
Sbjct: 619 GIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTAL 658
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D ER FG + +N+V ++ +I +++ G+ EAL Y + +P++ TF+ +
Sbjct: 298 IEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRV-YSQLQSEGMEPDSFTFVGLFS 356
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
+CS S + EG +V VH + L+
Sbjct: 357 SCSVSSTVAEGAQVH---VHSVKFGLD 380
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F I +K++V W+ MI +A + E EA+E FY + KPN+ TF +L
Sbjct: 197 LDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQ-MELEGFKPNDTTFCCVLK 255
Query: 61 A 61
A
Sbjct: 256 A 256
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F I KN++ WS MIA + +HG +EAL F + S KPN +TF+++L ACS
Sbjct: 350 AWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVF-TDMRKSGLKPNYITFITVLAACS 408
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+ EG ++ M +F ++ +EHYG VDLL + + +W
Sbjct: 409 HAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALW 468
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRI+ NV++ ++ A+ F LD N YY L
Sbjct: 469 GALLSACRIYKNVELAKICAERLFELDATNSGYYVLL 505
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILFAC 62
A R ++D++VV W+ MIA +A +G EAL + ++I D + N VT ++L AC
Sbjct: 247 AARKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLAC 306
Query: 63 SYSGLIEEGIKVFDIMVH 80
+++G I+ G ++ + +V
Sbjct: 307 AHAGAIQTGKRIHNQVVR 324
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
+R+F + +++VV W+ +I+ + +HG ++A++ F +IH P+ ++F+++L ACS+
Sbjct: 341 QRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIH-QGSSPSYISFITVLGACSH 399
Query: 65 SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWG 109
+GL+EEG +F+ M+ +++ +EHY VDLL E P VWG
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWG 459
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LLG+CRIH NV++ E + F L+P+N Y L
Sbjct: 460 SLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLL 495
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYL-VIHCSDGKPNNVTFLSILFAC 62
A +F + KN V WS MIA A + +ALE F L ++ D PN+VT +++L AC
Sbjct: 237 ANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQAC 296
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVK 122
+ +E+G ++H + L L+ ++ L T G +L R+ N+K
Sbjct: 297 AGLAALEQG-----KLIHGYILRRGLDSILPVLNALITMYGR---CGEILMGQRVFDNMK 348
Query: 123 IGELVA 128
++V+
Sbjct: 349 NRDVVS 354
>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++++ ++F I + V W+ M+A +A+HG +EA+E F ++ +P++VTF +L
Sbjct: 301 LNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLS 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++EG F +M +++ L+HY VDLL E
Sbjct: 361 ACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNS 420
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H N+ +G+ AK+ LDP + Y L
Sbjct: 421 GVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIML 460
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + K+ V W+ +++ A GQ E L F + S+ K N TFLS++ AC
Sbjct: 98 DAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISAC 157
Query: 63 SYSGLIEEG 71
+EG
Sbjct: 158 VSEKACDEG 166
>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
Length = 563
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
D+ R F + +NV+ W+ +I + A HG +A+ F + DG KPN+VTFLS+L A
Sbjct: 373 DSRRAFDEMPSRNVISWTSLITACAQHGFGEDAVTLFARMEE--DGVKPNDVTFLSLLSA 430
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+SG++ +G++ F M++ + +D +HY +DLLA G E +
Sbjct: 431 CSHSGMMNKGMEYFTSMMNKYGIDPRAKHYSSAIDLLARGGQLEDAWMLLQKTNTECKSS 490
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++GA+LGAC++H N+ +GE A + F +DPK+ Y L
Sbjct: 491 MYGAMLGACKVHGNIPLGETAANNLFSIDPKSSVNYAVL 529
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ ++VV W+ M++ +A +G+ EALE F L++ S +PN TF S AC+
Sbjct: 70 ARAVFDGMPHRSVVSWTAMVSGYAKNGRAPEALELFALMLR-SGARPNQFTFGSAARACA 128
Query: 64 YSGLIEEGIKVF----------DIMVHDFQLDLNLE--HYGITVDLLATGETEPYV-WGA 110
G +V D+ V +D++L G L A E + V W A
Sbjct: 129 GGRCARSGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNA 188
Query: 111 LL 112
L+
Sbjct: 189 LM 190
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F K+VV+W+ +I +A HG EAL F+ +H S P++VTF+ +L ACS
Sbjct: 466 AKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFH-DMHFSGIMPDDVTFVGVLSACS 524
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
Y+G +++G+++F+ M +Q++ +EHY VDLL E + +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKN 138
GALLGACR H + + E+ AK L+PKN
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKN 614
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + ++NVV W+ M+ + G EA F+ + + N V++ +L
Sbjct: 176 INEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVVSWTVMLG 230
Query: 61 ACSYSGLIEEGIKVFDIM 78
G I+E ++FD+M
Sbjct: 231 GLLQEGRIDEACRLFDMM 248
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F K+VV+W+ +I +A HG EAL F+ +H S P++VTF+ +L ACS
Sbjct: 466 AKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFH-DMHFSGIMPDDVTFVGVLSACS 524
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
Y+G +++G+++F+ M +Q++ +EHY VDLL E + +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKN 138
GALLGACR H + + E+ AK L+PKN
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKN 614
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + ++NVV W+ M+ + G EA F+ + + N V++ +L
Sbjct: 176 INEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVVSWTVMLG 230
Query: 61 ACSYSGLIEEGIKVFDIM 78
G I+E ++FD+M
Sbjct: 231 GLLQEGRIDEACRLFDMM 248
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +++V+ WS MI+ A +G +EAL+ F L + S KPN +T + +LF
Sbjct: 261 LEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFEL-MKSSGTKPNYITIVGVLF 319
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E+G F M + ++ EHYG +DLL E EP
Sbjct: 320 ACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 379
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+ N+ + E AK LDP++ YT L
Sbjct: 380 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVL 419
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 19/128 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA ++F + +NV+ W+ MI++++ ++ALE L++ DG +PN T+ S+L
Sbjct: 64 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR--DGVRPNVYTYSSVL 121
Query: 60 FACS--------YSGLIEEGIKVFDIMVHDFQLDL-----NLEHYGITVDLLATGETEPY 106
AC+ + G+I+EG++ D+ V +D+ E D + TG+
Sbjct: 122 RACNGMSDVRMLHCGIIKEGLES-DVYVRSALIDVFAKLGEPEDALSVFDEMVTGDA--I 178
Query: 107 VWGALLGA 114
VW +++G
Sbjct: 179 VWNSIIGG 186
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 16/156 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F D+++ +W+ MI+ A+HG ALE F + PN++TF+ L
Sbjct: 480 IDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFE-EMEALGVTPNDITFIGALH 538
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGL++EG ++F MVH+F +EHYG VDLL ++ P
Sbjct: 539 ACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNI 598
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
V+G+ L AC++H N+K+GE AK L+P Y
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGY 634
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFAC 62
A R+F G+ +++ W+ MIA++ E + F ++ +G PN +T LS++ C
Sbjct: 281 ARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML--GEGMFPNEITMLSLVKEC 338
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETEPY 106
+G +E G ++H F L G T+ L LAT + Y
Sbjct: 339 GTAGALELG-----KLLHAFTL-----RNGFTLSLVLATAFIDMY 373
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I D++V+ W+ MI + HG R AL+ F + + +PN++T+LS++ ACS
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGA-VEPNDITYLSVISACS 562
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YVW 108
+SGL++EG++ F M D+ L+ +++HYG VDLL E P V+
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA GAC+IH N+++GE AK F L+P Y+ L
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A IF G+ K VV W+ M+ + +G+ +A+ F ++ +G P VT + L
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE--EGIDPTGVTIMEAL 356
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC+ G +E G VH F LNL
Sbjct: 357 HACADLGDLERG-----KFVHKFVDQLNL 380
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD--GKPNNVTFLSI 58
+DDA ++F + ++++V W+ +IA + +G ++ALE LV+ D +P+++T +++
Sbjct: 198 IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE---LVLRMQDEGQRPDSITLVTV 254
Query: 59 LFACSYSGLIEEG 71
L A + GL+ G
Sbjct: 255 LPAAADVGLLMVG 267
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NV+ W+ MI A HG LE F + KPN VT+++IL
Sbjct: 525 IDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTK-EGVKPNEVTYVAILS 583
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ GL+ EG + F+ M D ++ +EHY VDLL T P+
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV 643
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LGACR+H N ++G+L A+ DP A Y L
Sbjct: 644 LVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQL 683
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A +F + K+V +W+ +I+ +A HG REA+ F L + KPN +TF ++L
Sbjct: 294 MEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKF-LEMQNMGVKPNAITFTAVLT 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+GL+EEG VF+ + D+ L +EHYG VDLL +
Sbjct: 353 ACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNA 412
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL AC+IH N+++GE + + +D + Y +
Sbjct: 413 VIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHM 452
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1 MDDAERIFGGIIDKNVVI-WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
MD A +F + +KN I W+ MI+ + G +EAL+ F+ + S+ P+NV+ S L
Sbjct: 192 MDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFH-EMQNSNVPPDNVSLASAL 250
Query: 60 FACSYSGLIEEG 71
ACS G +E+G
Sbjct: 251 SACSQLGALEQG 262
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD ++F + ++ V W+ MI HA +G+ ++AL F ++ CS P++VT + +L
Sbjct: 1183 IDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERML-CSKESPDSVTMIGVLS 1241
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL+EEG + F M D + + +HY +DLL E +
Sbjct: 1242 ACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDA 1301
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LLG+CR+H NV++GE A F LDP+N Y L
Sbjct: 1302 VLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLL 1341
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
RIF ++V++W+ MI A G+ L+ F + K ++VTFL L +C
Sbjct: 542 RIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFD-EMQKQGIKADSVTFLGALVSCISE 600
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV-----------WGA 110
G + G F +M+ D + +EHY ++LL E E +V W
Sbjct: 601 GHVRLGRSYFTLMM-DESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLR 659
Query: 111 LLGACRIHHNVKIGELVAK 129
+ CR + N K+GE AK
Sbjct: 660 IFDCCREYGNRKLGERAAK 678
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F +++KNV+ W+ +IA++A +G+E EAL F + S P + T+ ++L
Sbjct: 1076 VEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVW-PTHYTYGNVLN 1134
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLNLE 89
AC ++ G + ++ F+ D E
Sbjct: 1135 ACGNVADLQLGQQAHVHVLKEGFRFDFGPE 1164
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
++A R+F + ++N+V W+ +I + +G EAL F ++ + P+ VT S++ A
Sbjct: 944 EEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMK-AGFVPDEVTLASVMSA 1002
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
C+ EG +V +V + ++ VD+ A
Sbjct: 1003 CAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYA 1040
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A RIF ++ +VV W+ MI+ + +HG+ ++ALE F + KPN VTFL+IL
Sbjct: 577 LGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFG-KMEGGSIKPNGVTFLAILS 635
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL+EEG ++F M + L+ NL+HY VDLL E +
Sbjct: 636 ACCHSGLLEEGRQLFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDG 694
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WG LL AC++H + ++G +AK F D +N+ YY
Sbjct: 695 GIWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYY 731
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 20/159 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+++A ++F K++V+W+ MI ++ +HG+ + A+E F ++ D K P+++TFL++
Sbjct: 465 LENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM---EDQKLIPDHITFLAL 521
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP 105
L+ACS+SGLI EG ++ + M +QL+ EHY VDLL + EP
Sbjct: 522 LYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEP 581
Query: 106 Y--VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW A LGACRIH N K+GE+ A+ LDP + Y
Sbjct: 582 TAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSY 620
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A RIF + +K+ + W+ MIA +G EAL+ F+ + ++ KP+ V+ +SIL
Sbjct: 163 MSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQ-FFCGLQDANLKPDEVSLISILA 221
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
A G + G ++ + ++ LD NL +D+
Sbjct: 222 ASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDM 257
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
A R+F I K+VV W+ MI+ + +G EAL FYL+ S +P+++T +SI
Sbjct: 367 ATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSV-EPDSITLVSI 420
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ ++F + ++++ W+ +I +A HG REA+ + L++ + PN VTF+ +L AC
Sbjct: 602 DSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMV-SAGVLPNEVTFVGLLHAC 660
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG + F M D+ L LEHY VDLL E + +
Sbjct: 661 SHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVI 720
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+IH NV+IG A+ F ++P N Y L
Sbjct: 721 WSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVML 758
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+AE +F + +N + W+GMIA +A +G+ +AL + +H P+ + S F
Sbjct: 368 VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQ-ALHRKGMLPSLSSLTSSFF 426
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +E G +V + V
Sbjct: 427 ACSNIEALETGKQVHSLAV 445
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 20/164 (12%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++ A +IF GI +K +VV+W +I+ + +HG AL+ F ++ S PN +TF
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVR-SGVTPNEITFT 529
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
S L ACS+SGL+EEG+ +F M+ ++ HY VDLL
Sbjct: 530 SALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPF 589
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
E +WGALL AC H NV++GE+ A F L+P+N Y L
Sbjct: 590 EPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLL 633
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +FG + ++V+ W+ MI + G ALE L + +PN VT S++
Sbjct: 269 MDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRL-MQFEGVRPNAVTIASLVS 327
Query: 61 AC 62
AC
Sbjct: 328 AC 329
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A R+F + + NV W+ MI +A+HGQ +ALE F + + +PN+VTF+ +L
Sbjct: 283 MDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALECFRCMRE-AGVRPNHVTFIGVLS 341
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC + G ++EG FD+M + L ++HYG VDLL E P
Sbjct: 342 ACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVDLLGRAGLLEEARKMVERMPMKANV 401
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+GAC + NVK+GE VA+ L+P ND + L
Sbjct: 402 IVWGCLMGACEKYGNVKMGEWVAEHLLELEPWNDGVFVVL 441
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A IF + +++++W+ MI ++ +HG ++A++ F + + P+++TFL++L+
Sbjct: 604 MENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTD-ENVLPDHITFLALLY 662
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EPY- 106
ACS+SGL+ EG + F+IM ++++L+ EHY VDLLA + EP
Sbjct: 663 ACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSA 722
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW ALLGACRIH N +GE+ AK L+ +N Y
Sbjct: 723 EVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNY 759
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F I K++V W+ MI +G EALE F +I ++ +P+ +T +S+L+
Sbjct: 503 VDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIE-TNIEPDLITLVSVLY 561
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
A + +++G ++ ++
Sbjct: 562 AAAALSSLKKGKEIHGFLIR 581
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 17/156 (10%)
Query: 1 MDDAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ A ++F GI +++ W+ MI + A+HG REAL FY + + KP+ +TF+ ++
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFY-KLRMAGVKPDGITFVGVI 329
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-------------ATGETEP- 105
AC++ GL+ EG FD M +F L +EHYG VDLL A+ EP
Sbjct: 330 LACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPD 389
Query: 106 -YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
+WGALLGAC H NV++ EL HL+P+N A
Sbjct: 390 AVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTA 425
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE++F + D+NVV W+ M++ +A +G+ EA+E F + + +PN +T S+L
Sbjct: 169 VDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLP 228
Query: 61 ACSYSGLIEEGIKV 74
AC+ G +E G KV
Sbjct: 229 ACAAVGAMELGRKV 242
>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g40410, mitochondrial; Flags: Precursor
gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 608
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ +F I + + W+ M+A++A HG R+A++ F L++H P++VTF +L
Sbjct: 286 LEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGIS-PDHVTFTHLLN 344
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F+ M +++D L+HY VDLL E
Sbjct: 345 ACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSS 404
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ + ++G A+ F L+P++ Y L
Sbjct: 405 GVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
AE++F + ++++V W+ +I+ ++ G + E ++ G +PN VTFLS++ AC
Sbjct: 85 AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144
Query: 63 SYSGLIEEG------IKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
Y G EEG + F ++ ++ + YG T DL ++
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSS 188
>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F D++ V+WS MI+++ HGQ EA+E F + ++ + N V FL++L+
Sbjct: 328 LGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLY 387
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL ++G+++FD+MV + L+HY VDLL +T+
Sbjct: 388 ACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDI 447
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC IH N ++ + V K+ +DP + A Y L
Sbjct: 448 VIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLL 487
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E + + +N+V W+ +I +A +G E + Y ++ S +PN +TF+++L
Sbjct: 227 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP-ETVLYLYKMMKISGCRPNKITFVTVLS 285
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 286 SCSDLAIRGQGQQI 299
>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 739
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F ++ K+VV W+ MI HG EAL+ F ++ S+ +PN+VTFLS+L ACS+SGL
Sbjct: 513 FNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLE-SEVQPNSVTFLSLLSACSHSGL 571
Query: 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET---------------EPYVWGALL 112
+ EG +VF M F+++ +L HY VDLL + +WGALL
Sbjct: 572 VREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGALL 631
Query: 113 GACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
A R+H + K+GE A+ L+P N YYT
Sbjct: 632 AASRVHEDKKLGEYAAEKLLELEPDNVGYYT 662
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 17/156 (10%)
Query: 1 MDDAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ A ++F GI +++ W+ MI + A+HG REAL FY + + KP+ +TF+ ++
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFY-KLRMAGVKPDGITFVGVI 329
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-------------ATGETEP- 105
AC++ GL+ EG FD M +F L +EHYG VDLL A+ EP
Sbjct: 330 LACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPD 389
Query: 106 -YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
+WGALLGAC H NV++ EL HL+P+N A
Sbjct: 390 AVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTA 425
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE++F + D+NVV W+ M++ +A +G+ EA+E F + + +PN +T S+L
Sbjct: 169 VDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLP 228
Query: 61 ACSYSGLIEEGIKV 74
AC+ G +E G KV
Sbjct: 229 ACAAVGAMELGRKV 242
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +F + +NVV WS MI + ++HG+ +AL F + + +PN VTF+ +L+
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLY 453
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
CS+SGL+EEG K+F M ++ + LEHYG VDL E+ P
Sbjct: 454 GCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNV 513
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
+WG+L+ ACRIH +++G+ AK L+P +D
Sbjct: 514 VIWGSLMSACRIHGELELGKFAAKRILELEPDHD 547
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+ IF K++V W+ MI+++ +EAL F + CS KP+ V+ S++
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC-CSGIKPDVVSMFSVIS 352
Query: 61 ACSYSGLIEEG 71
AC+ G++++
Sbjct: 353 ACANLGILDKA 363
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AIHG +EA + F + + +PN++TF++IL ACS
Sbjct: 443 ATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE-AGVEPNDITFVAILSACS 501
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHYG +DLLA E P
Sbjct: 502 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSAL 561
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG CRIH N ++GE+V K +L P + Y L
Sbjct: 562 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 598
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 45/174 (25%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-------------YLVIHCSD 47
+D+A+R+F + ++N+V W+ M+A G +A F L +
Sbjct: 308 IDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367
Query: 48 GKPN-----------------NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90
GKPN T +S+L AC++ G +++G+ + ++D ++++N
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL-HTYINDNRIEVNSIV 426
Query: 91 YGITVDL--------LATG------ETEPYVWGALLGACRIHHNVKIGELVAKD 130
VD+ LAT + W ++ IH NVK + + K+
Sbjct: 427 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKE 480
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A + F + +KNV W+ MIA + +HG +ALE F +I S +PN +TF+S+L
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID-SGVRPNYITFVSVLA 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL EG + F+ M F ++ LEHYG VDLL + +
Sbjct: 397 ACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDS 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACRIH NV++ E+ F LD N YY L
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +IF I+DK+ V ++ +++ +A G EA E F ++ N +T ++L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG + G +HD + + LE
Sbjct: 299 HSGALRIG-----KCIHDQVIRMGLE 319
>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 565
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F D++ V+WS MI+++ HGQ EA+E F + ++ + N V FL++L+
Sbjct: 243 LGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLY 302
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL ++G+++FD+MV + L+HY VDLL +T+
Sbjct: 303 ACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDI 362
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC IH N ++ + V K+ +DP + A Y L
Sbjct: 363 VIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLL 402
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E + + +N+V W+ +I +A +G E + Y ++ S +PN +TF+++L
Sbjct: 142 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP-ETVLYLYKMMKISGCRPNKITFVTVLS 200
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 201 SCSDLAIRGQGQQI 214
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 19/156 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSIL 59
++ AE++F ++++V W+ MI + HG ++ALE F ++ + G P ++VTF+ +L
Sbjct: 557 IESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN--QGLPLDDVTFIGVL 614
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL+EEG K F+IM+ D+ +D EHY VDL +
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
P +W LL ACR+H N+++G+L A+ L P NDA
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSLQP-NDA 709
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
++ R+F I K++V WS M+ A +A+E F ++ +G KPN TF S++ A
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV--KEGVKPNEYTFSSVINA 514
Query: 62 CSYS-GLIEEGIKV 74
CS S +E G ++
Sbjct: 515 CSSSAATVEHGKQI 528
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+D IF + KNVV W+ +++ +A +G E + + PN TF ++L A
Sbjct: 156 EDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ-MQMEGVNPNGFTFATVLGA 214
Query: 62 CSYSGLIEEGIKVFDIMVHD 81
+ +IE G++V ++V +
Sbjct: 215 LADESIIEGGVQVHAMIVKN 234
>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
Length = 563
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F D++ V+WS MI+++ HGQ EA+E F + ++ + N V FL++L+
Sbjct: 241 LGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLY 300
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL ++G+++FD+MV + L+HY VDLL +T+
Sbjct: 301 ACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDI 360
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC IH N ++ + V K+ +DP + A Y L
Sbjct: 361 VIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLL 400
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E + + +N+V W+ +I +A +G E + Y ++ S +PN +TF+++L
Sbjct: 140 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP-ETVLYLYKMMKISGCRPNKITFVTVLS 198
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 199 SCSDLAIRGQGQQI 212
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA+R F I ++ +V WS MI +A HG +EAL F ++ DG PN++T +S+L
Sbjct: 537 IEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR--DGVPPNHITLVSVL 594
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL+ EG + F+ M F + EHY +DLL E +
Sbjct: 595 CACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEAD 654
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+VWGALLGA RIH N+++G+ AK F L+P+ + L
Sbjct: 655 GFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLL 695
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 20/134 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD+ R+FGGI+++NVV W+ + + + EA+ F ++ S PN + IL
Sbjct: 133 LDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVR-SGIMPNEFSISIILN 191
Query: 61 ACSYSGLIEE--GIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV---------- 107
AC +GL E G K+ +M+ LDL+ VD+ + GE E V
Sbjct: 192 AC--AGLQEGDLGRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPD 248
Query: 108 ---WGALLGACRIH 118
W A++ C +H
Sbjct: 249 VVSWNAIIAGCVLH 262
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +IF +++V ++ MI +++ +G EAL+ YL + +D KP+ S+L
Sbjct: 436 IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK-LYLQMQDADIKPDPFICSSLLN 494
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
AC+ E+G QL ++ +G D+ A+
Sbjct: 495 ACANLSAYEQGK----------QLHVHAIKFGFMCDIFAS 524
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA F +I KN+V W+ MI +A +G +A+E F ++ + KP++VTF+++L
Sbjct: 570 MDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYML-TTKQKPDSVTFIAVLT 628
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS+SGL++E + F+ M ++ + +EHY +D LA + +P
Sbjct: 629 GCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDP 688
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC +HHN ++GE AK F LDPKN + Y L
Sbjct: 689 ILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLL 728
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A + G + D+N V W+ +IA+ A G EALE + ++ +G P N T S+L AC
Sbjct: 95 ARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQ--EGLAPTNFTLASVLSAC 152
Query: 63 SYSGLIEEGIKVFDIMV 79
+++G + + V
Sbjct: 153 GAVAALDDGRRCHGLAV 169
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 18/152 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F I DK+VV W+ MI +A+HG + AL+ F + + KP ++TF+ IL
Sbjct: 324 LEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE-TGHKPTDITFIGILS 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
AC + GL+EEG F +M + ++ +EHYG V+LL T +P
Sbjct: 383 ACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADP 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137
+WG LLG CR+H N+K+GE +AK F +D K
Sbjct: 443 VLWGTLLGCCRLHVNIKLGEEIAK--FLVDQK 472
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ +++VV W+ MI +A G E+L+ F ++ + PN VT L++L
Sbjct: 223 LDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML-VAKAIPNEVTVLAVLS 281
Query: 61 ACSYSGLIEEG 71
AC G +E G
Sbjct: 282 ACGQLGALESG 292
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV WS MI+++A HG EAL+ F L+ + +PN+ TF ++L AC
Sbjct: 378 ARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKN-EGVRPNSFTFTAVLVACG 436
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY-------------VW 108
+SGL+EEG+K F+ ++ D+Q+ LEHY VD+L A E Y VW
Sbjct: 437 HSGLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVW 496
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GA L C++H N+++ E VA+D F + +Y
Sbjct: 497 GAFLAGCKLHGNLELAEFVARDLFQSGSNDVTFY 530
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F G+ +++ W+ M+A + H EA++ F ++ G + VT +S+L AC+
Sbjct: 277 AQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGF-DCVTLVSVLSACA 335
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
SG ++ G V + + + LD + + VD+ A
Sbjct: 336 RSGALQTGKWVHE-LARNHGLDTDARIGNVLVDMYA 370
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A + F + +KNV W+ MIA + +HG +ALE F +I S +PN +TF+S+L
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID-SGVRPNYITFVSVLA 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL EG + F+ M F ++ LEHYG VDLL + +
Sbjct: 397 ACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDS 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACRIH NV++ E+ F LD N YY L
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +IF I+DK+ V ++ +++ +A G EA E F ++ N +T ++L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG + G +HD + + LE
Sbjct: 299 HSGALRIG-----KCIHDQVIRMGLE 319
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A + F + ++NVV W+ MIA + +HG EA++ ++L + C PN+VTF+++L
Sbjct: 257 VDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHL-MRCKGPPPNDVTFVAVLS 315
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETE 104
AC+++GLI EG F M + L +EHY VD+ G+
Sbjct: 316 ACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPG 375
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VW A+LGAC++H N +G VA+ L+P+N +Y+ L
Sbjct: 376 PEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLL 416
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I DKNVV W+ MI+ + +G + +E Y + + P+++TF++ L AC+
Sbjct: 159 ARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIE-VYKEMKVAKAVPDSMTFVATLSACA 217
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
+G ++ G +V +V + ++D+++
Sbjct: 218 QAGALDLGREVERRIVSE-RMDISV 241
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F +++K+V+ W+ MI+ + ++G A+E F L+ S+ KPN +TFLS+L
Sbjct: 566 LEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEE-SNVKPNEITFLSLLS 624
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
AC+++GL+EEG VF M + + NL+HY VDLL E E V
Sbjct: 625 ACAHAGLVEEGKNVFAKM-QSYSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDG 683
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL AC+ H+ +++G + K+ +P+ND YY
Sbjct: 684 GVWGALLSACKTHNQIEMGIRIGKNAIDSEPENDGYY 720
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ + RIF +++V++W+ +I++H IH + E + + ++ D PN T + +L
Sbjct: 466 MNVSWRIFNRS-ERDVILWNALISAH-IHVKHYEEAISLFDIMIMEDQNPNTATLVVVLS 523
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
ACS+ +E+G ++ I F+L+L L
Sbjct: 524 ACSHLAFLEKGERLHRYINEKGFKLNLPL 552
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA F +I KN+V W+ MI +A +G +A+E F ++ + KP++VTF+++L
Sbjct: 469 MDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYML-TTKQKPDSVTFIAVLT 527
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS+SGL++E + F+ M ++ + +EHY +D LA + +P
Sbjct: 528 GCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDP 587
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC +HHN ++GE AK F LDPKN + Y L
Sbjct: 588 ILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLL 627
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEG 71
D+N V W+ +IA+ A G EALE + ++ +G P N T S+L AC +++G
Sbjct: 3 DRNAVSWNTVIAAVARSGSPGEALEMYQGMLQ--EGLAPTNFTLASVLSACGAVAALDDG 60
Query: 72 IKVFDIMV 79
+ + V
Sbjct: 61 RRCHGLAV 68
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +++VV W+ MI + +HGQ +ALE F L + PN+ TF+ +L
Sbjct: 404 MDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMF-LDMEKRGPMPNDATFICVLS 462
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++SG+I EG FD+M ++++ +EHYG VDLL E
Sbjct: 463 ACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGT 522
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL ACR H N ++ E+VAK L+P++ Y
Sbjct: 523 ALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPY 559
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD ++F + ++ V W+ MI +A +G+ ++AL F ++ CS+ P++VT + +L
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML-CSNENPDSVTMIGVLS 500
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC +SGL++EG + F M D + + +HY VDLL TEP
Sbjct: 501 ACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDS 560
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LLGACR+H NV++GE A F LDP+N Y L
Sbjct: 561 VLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLL 600
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F +++KNV+ W+ +IA++A +G+E EA+ F + S P + T+ ++L
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW-PTHYTYGNVLN 393
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLNLE 89
AC +++ G + ++ F+ D E
Sbjct: 394 ACGNIAVLQLGQQAHVHVLKEGFRFDFGPE 423
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + ++NVV W+ +I + +G EAL ++ + + P+ VT S++ AC
Sbjct: 204 DARRVFDAMPERNVVSWNSLITCYEQNGPVGEAL-VLFVEMMATGFFPDEVTLSSVMSAC 262
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
+ EG +V MV +L ++ VD+ A
Sbjct: 263 AGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYA 299
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +++VV W+ MI + +HGQ +ALE F L + PN+ TF+ +L
Sbjct: 255 MDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMF-LDMEKRGPMPNDATFICVLS 313
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++SG+I EG FD+M ++++ +EHYG VDLL E
Sbjct: 314 ACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGT 373
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR H N ++ E+VAK L+P++ Y L
Sbjct: 374 ALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLL 413
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AIHG +EA + F + + +PN++TF++IL ACS
Sbjct: 352 ATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE-AGVEPNDITFVAILSACS 410
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHYG +DLLA E P
Sbjct: 411 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSAL 470
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG CRIH N ++GE+V K +L P + Y L
Sbjct: 471 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 507
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 16/144 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F ++ ++V+ W+ MI +AI G+ EAL A + + KP T +S+L
Sbjct: 248 MGHARMVFDRMVCRDVISWNTMINGYAICGKPNEAL-ALFDQMRAVGVKPTEATVVSLLS 306
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL--------LATG------ETEPY 106
AC++ G +++G+ + ++D ++++N VD+ LAT +
Sbjct: 307 ACAHLGALDKGLHL-HTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 365
Query: 107 VWGALLGACRIHHNVKIGELVAKD 130
W ++ IH NVK + + K+
Sbjct: 366 AWNTIIAGMAIHGNVKEAQQLFKE 389
>gi|449473751|ref|XP_004153972.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Cucumis sativus]
Length = 591
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A + F II K+VV W+ MI + HG +AL F+ + + PNNVTFLS+L AC
Sbjct: 368 SARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTS-EEVTPNNVTFLSLLSAC 426
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
S+SGL+ EG ++F M F + +LEHY VDLL+ T + +
Sbjct: 427 SHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRI 486
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL+GACR++ + KI A L+P N YYT L
Sbjct: 487 WGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLL 524
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +K+V+ W+GMIA++A HG EA+ A Y + + KPN+VT++ +L ACS
Sbjct: 377 ARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAI-ALYEKMQENRYKPNDVTYVGLLSACS 435
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL----------------LATGETEPYV 107
+SGL++EG+++F+ M D + + EHY +DL L T V
Sbjct: 436 HSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTV 495
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C H N IG+L A++ +P N YT L
Sbjct: 496 WSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLL 533
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F D++VV W+ M+A++A GQ EA ++H D + N VT+ ++L
Sbjct: 57 DARRLFDRTPDRDVVSWTAMVAAYARQGQLHEA----SALLHRPDARRNVVTWTALLSGY 112
Query: 63 SYSGLIEEGIKVFDIM 78
+ + ++E +FD M
Sbjct: 113 ARARRVDEARALFDRM 128
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F D++ V+WS MI+++ HGQ EA++ F + ++ + N V FL++L+
Sbjct: 243 LGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLY 302
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL ++G+++FD+MV + L+HY VDLL + +P
Sbjct: 303 ACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDP 362
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC IH N ++ + V K+ +DP + A Y L
Sbjct: 363 VIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLL 402
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E + + +N+V W+ +I +A +G E + Y ++ S +PN +TF+++L
Sbjct: 142 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP-ETVLYLYKMMKISGCRPNKITFVTVLS 200
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 201 SCSDLAIRGQGQQI 214
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 18/146 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F + KNVV W+ +I + A+HG R AL F + S+G +PN VTFL +L+AC ++
Sbjct: 359 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLYACCHA 416
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--WGA 110
GL+EEG +F IMV ++++ EHYG VDLL + P V WG+
Sbjct: 417 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 476
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDP 136
LL ACR+H ++++G AK LDP
Sbjct: 477 LLAACRMHGDLELGTFAAKKILELDP 502
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF G+ K+VV WS MIA +A + EAL F+ + S KP+ +T LS++ AC+
Sbjct: 255 AHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFH-DMQRSGVKPDEITMLSVISACA 313
Query: 64 YSGLIEEG 71
G +E+
Sbjct: 314 NVGALEKA 321
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A F + +KNV W+ MIA + +HG +ALE F +I S +PN +TF+S+L
Sbjct: 338 VETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID-SGVRPNYITFVSVLA 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL + G F+ M F ++ LEHYG VDLL E +
Sbjct: 397 ACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDS 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACRIH NV++ E+ F LDP N YY L
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLL 496
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +IF I+DK+ V ++ +++ +A G EA + F +I N +T ++L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVS 298
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG + G +HD + + LE
Sbjct: 299 HSGALRIG-----KCIHDQVIRMGLE 319
>gi|449527473|ref|XP_004170735.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 402
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A + F II K+VV W+ MI + HG +AL F+ + + PNNVTFLS+L AC
Sbjct: 179 SARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTS-EEVTPNNVTFLSLLSAC 237
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
S+SGL+ EG ++F M F + +LEHY VDLL+ T + +
Sbjct: 238 SHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRI 297
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL+GACR++ + KI A L+P N YYT L
Sbjct: 298 WGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLL 335
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD ++F + ++ V W+ MI +A +G+ ++AL F ++ CS+ P++VT + +L
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML-CSNENPDSVTMIGVLS 500
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL++EG + F M D + + +HY VDLL E +
Sbjct: 501 ACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDS 560
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LLGACR+H NV++GE A F LDP+N Y L
Sbjct: 561 VLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLL 600
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA R+F + ++NVV W+ +I + +G EAL F ++ + P+ VT S++ A
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMM-AAGFSPDEVTLSSVMSA 261
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
C+ EG +V MV +L ++ VD+ A
Sbjct: 262 CAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYA 299
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F +++KNV+ W+ +IA++A +G+E EA+ F + S P + T+ ++L
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW-PTHYTYGNVLN 393
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLNLE 89
AC ++ G + ++ F+ D E
Sbjct: 394 ACGNIADLQLGQQAHVHVLKEGFRFDFGPE 423
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A R+F G+ +KNV +S MI A HG+ +A+ F ++ +D +PN+VTF+ +L
Sbjct: 330 IDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLT 389
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS++G+++EG F M + + + +HY VDLL EP+
Sbjct: 390 ACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHG 449
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N K+ ++ A+ F L+P+ Y L
Sbjct: 450 GVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLL 489
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G +K+V W+ M++ A+HG + +EAF ++ S KPN VTF+++L CS+SG
Sbjct: 278 VFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD-SGVKPNGVTFVALLSGCSHSG 336
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+ EG+ FD M DF ++ +EH+G VDLL E +WG+L
Sbjct: 337 LVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSL 396
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L ACR++ NV+IGEL A+ +P N A Y +L
Sbjct: 397 LNACRVYKNVEIGELAAQWLIKDEPWNGALYMTL 430
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++V+ +S MIA++ + REAL+ F + +P++ +S+L AC+
Sbjct: 173 ARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKI-EPSDSCVMSVLCACA 231
Query: 64 YSGLIEEGIKVFD 76
G ++ G V+
Sbjct: 232 NLGALDVGRWVYS 244
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F I +K + W+ MI AI G +EA+ F + G P+ +TF ++L
Sbjct: 1087 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-PDAITFTALLS 1145
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC SGLI EG K FD M+ D+++ LEHY VDLL + +
Sbjct: 1146 ACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDA 1205
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALLG+CRIH N+ E AK+ F L+P N A Y
Sbjct: 1206 TIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANY 1242
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++N W+ MI+S+A G +A FY + SD KP+ VT+ +L
Sbjct: 829 ARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY-ELESSDMKPDIVTWNCLLSGHF 887
Query: 64 YSGLIEEGIKVFDIM 78
G EE + + M
Sbjct: 888 LHGYKEEVLNILQRM 902
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 1 MDDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLS 57
++ A R+FG I +N+V W+ +I++ A+HG +EALE F + C KPN +TFLS
Sbjct: 275 IESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECL--KPNRITFLS 332
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------ETEPY 106
+L ACS+ GL+EEG+K F MV+ +Q+ +++HYG +D+L E Y
Sbjct: 333 VLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPNY 392
Query: 107 V-----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V W LLGAC H NV++G V + ++ K Y L
Sbjct: 393 VVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKKYGGDYVLL 436
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD ++F + ++ V W+ MI +A +G+ ++AL F ++ CS+ P++VT + +L
Sbjct: 200 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML-CSNENPDSVTMIGVLS 258
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC +SGL++EG + F M D + + +HY VDLL TEP
Sbjct: 259 ACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDS 318
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LLGACR+H NV++GE A F LDP+N Y L
Sbjct: 319 VLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLL 358
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F +++KNV+ W+ +IA++A +G+E EA+ F + S P + T+ ++L
Sbjct: 93 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW-PTHYTYGNVLN 151
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLNLE 89
AC +++ G + ++ F+ D E
Sbjct: 152 ACGNIAVLQLGQQAHVHVLKEGFRFDFGPE 181
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ +++V WS MIA +AIHG +AL+ F + S PN VTF S+L
Sbjct: 259 LDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKR-SKTIPNCVTFTSVLS 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-------------LATGETEPYV 107
ACS+SGL+E+G ++F+ M ++++ ++HYG VDL + T EP V
Sbjct: 318 ACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNV 377
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W LLGAC+ H +GE +++ LDP + Y
Sbjct: 378 VLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENY 414
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ +F I K+VV W+ MI ++A+HG RE L F ++ S KPN+VTF +L CS
Sbjct: 423 SRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQ-SGIKPNSVTFTGVLSGCS 481
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+S L+EEG+++F+ M D ++ + HY VD+ + E W
Sbjct: 482 HSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAW 541
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACR++ NV++ ++ A F ++P N Y SL
Sbjct: 542 GALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSL 578
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG----KPNNVTFL 56
++ A R+F ++ K+VV W+ M + + G R L F C G KPN+VT
Sbjct: 183 VEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVF-----CEMGWNGVKPNSVTLS 237
Query: 57 SILFACS 63
SIL ACS
Sbjct: 238 SILPACS 244
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F +++K+V+ WS MIA A +G +EAL+ F + KPN VT + +LF
Sbjct: 213 LEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE-SMKVLGIKPNYVTIVGVLF 271
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+EEG+ F M F +D EHYG +DLL E EP
Sbjct: 272 ACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDA 331
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL ACR+H NV + AK LDP++ Y L
Sbjct: 332 VTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLL 371
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA+ +F + D+NVV W+ MI++++ +ALE +LV+ +G +PN T+ S+L A
Sbjct: 18 DAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALE--FLVLMLREGVRPNMFTYSSVLRA 75
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNV 121
C GL ++ + LD ++ +D+ + WG L A R+ +
Sbjct: 76 C--DGLF--NLRQLHCCIIKIGLDSDVFVRSALIDVYSR-------WGELENALRVFDEM 124
Query: 122 KIGELV 127
G+LV
Sbjct: 125 VTGDLV 130
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F ++ ++V+WS +IA A + EAL F + + T S+L
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKR-AGFLAQQTTLTSVLR 172
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDLN 87
AC+ L+E G +V ++ +D L LN
Sbjct: 173 ACTGLALLELGRQVHVHVLKYDQDLILN 200
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A RIF + KNV+ W+ MI++ A+HG AL F+ + + +PN +TF+ +L+
Sbjct: 406 LERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALR-FFHQMEDENIEPNGITFVGVLY 464
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL+EEG K+F M+++ + HYG VDL E P
Sbjct: 465 ACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNV 524
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+L+ ACR+H +++GE AK LDP +D + L
Sbjct: 525 IIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFL 564
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F ++ K++V WS MI+ +A +EAL F + KP+ VT LS++
Sbjct: 305 IENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFN-EMQSLGIKPDQVTMLSVIT 363
Query: 61 ACSYSGLIEEG 71
AC++ G +++
Sbjct: 364 ACAHLGALDQA 374
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++++ ++F + +++++W+ MI ++ +HG EA+ F + + P+++TFL++L+
Sbjct: 601 VENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTD-ENVIPDHITFLALLY 659
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY------------ 106
ACS+SGL+ EG + F+IM + +QL+ EHY VDLL+ + E Y
Sbjct: 660 ACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSS 719
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VW ALLGAC IH N ++GEL AK+ D KN Y
Sbjct: 720 EVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYA 757
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DAER+F ++ ++ V W+ +++ + R+AL ++ + S KP+ V+ L+++
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALN-YFRDMQNSAQKPDQVSVLNLIA 357
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
A SG + G +V + + LD N++ +D+ A
Sbjct: 358 ASGRSGNLLNGKEVHAYAIRN-GLDSNMQIGNTLIDMYA 395
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A R F I K++V W+ MI +G EALE FY + ++ +P+++ +S L A
Sbjct: 501 DYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ-TNIQPDSIAIISALSA 559
Query: 62 CSYSGLIEEGIKVFDIMVH 80
+ +++G ++ ++
Sbjct: 560 TANLSSLKKGKEIHGFLIR 578
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ DKNV +S MI A HG+ + + F ++ +D +PN+VTF+ +L
Sbjct: 341 IDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLT 400
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS++G+++EG F M + + + +HY VDLLA EP+
Sbjct: 401 ACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHG 460
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N ++ ++ A+ F L+P+ Y L
Sbjct: 461 GVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLL 500
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A R+F + DKN V W+ +I+++ HG +E++ +F + KP++VTFL+++
Sbjct: 596 MELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESV-SFLHRMQEEGYKPDHVTFLALIS 654
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+EEG+++F M ++ + +EH+ VDL + + +
Sbjct: 655 ACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDA 714
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+WGALL ACR+H NV++ ++ +++ F LDP N YY
Sbjct: 715 GIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYV 752
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D + IF + K+ V W+ MI+S + +G+ +EAL+ F + C +G K NNVT S L
Sbjct: 495 LDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQM--CMEGIKYNNVTISSAL 552
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+ I G ++ +++
Sbjct: 553 SACASLPAIYYGKEIHGVII 572
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + ++V W+GMI+ +G EAL F ++ S +P++VT +S+L
Sbjct: 293 LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLR-SGARPDSVTLVSLLP 351
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
A + +++G +V ++ +
Sbjct: 352 ALTDLNGLKQGKEVHGYIIRN 372
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILFACS 63
+VVI S +I+ + ++G +AL+ F YL+ C KPN VT S+L AC+
Sbjct: 408 DVVIGSTVISGYVLNGMSEKALQMFRYLLEQCI--KPNAVTVASVLPACA 455
>gi|449439075|ref|XP_004137313.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 277
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F II K+VV W+ MI + HG +AL F+ + + PNNVTFLS+L ACS
Sbjct: 11 ARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTS-EEVTPNNVTFLSLLSACS 69
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
+SGL+ EG ++F M F + +LEHY VDLL+ T + +W
Sbjct: 70 HSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIW 129
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GAL+GACR++ + KI A L+P N YYT L
Sbjct: 130 GALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLL 166
>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Brachypodium distachyon]
Length = 594
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F G+ +K+VV W+ +IA + +HGQ + ++ + ++ KPN VTF S+L+
Sbjct: 393 LDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTSILLYNRMVQLGV-KPNTVTFASLLY 451
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G+++EG+++F+ M + N +HY VD++ E
Sbjct: 452 ACSHVGMVDEGLQLFEDMRGIHGVMPNADHYSSLVDMVGRAGRIEEAYRLIEDMPLEPST 511
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWGALLGAC +H NVK GE+ AK F L+PKN
Sbjct: 512 SVWGALLGACVLHKNVKFGEVAAKHLFELEPKN 544
>gi|326524926|dbj|BAK04399.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 584
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A + F G+ + VV WS MI+++A HG+ EAL F + KPN+ T ++L AC
Sbjct: 384 ARQAFDGLREPGVVSWSAMISAYANHGEPEEALNLFS-AMKDQGVKPNSFTLTAVLVACG 442
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG+ +F+ +V D+ + LE+Y VD+L + + +W
Sbjct: 443 HSGLVDEGLAIFNSIVRDYHISPTLENYACMVDMLGRAGRLVEAYEIIRGMSMQPDKCIW 502
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GA LG CR+H N+++ E VAKD F + +Y
Sbjct: 503 GAFLGGCRLHGNLELAEFVAKDLFQSGSNDVTFY 536
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F G+ VV W+ M+A + +G A++ F+ ++ G + VT +S+L AC+
Sbjct: 283 AKELFDGMAAHTVVSWNTMVAMYEQNGDGVRAIKFFHRMLSEKVGF-DAVTLVSVLSACT 341
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT------------GETEPYV--WG 109
G +E G V + + LD + + VD+ A G EP V W
Sbjct: 342 RQGALETGKWVHE-LARSRGLDTDARIGNVLVDMYAKCGEIAYARQAFDGLREPGVVSWS 400
Query: 110 ALLGACRIH 118
A++ A H
Sbjct: 401 AMISAYANH 409
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
M+ A +F G+ +K++V W MI +A++G +EA++ F + + KP+ TF+ +
Sbjct: 172 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGL 231
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L C+++GL++EG + F+ M F L ++EHYG VDLL E
Sbjct: 232 LCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA 291
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH + ++ EL K L+P N Y L
Sbjct: 292 NAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLL 333
>gi|449446907|ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 456
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+ F + D++VV +S +I + A HG+ +EAL+ F + +G KPN + F+ +L
Sbjct: 261 IERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEE--EGIKPNQICFIGVL 318
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE-------------P 105
AC+++GLIE+G K F++M F ++ HY VDLL GE E
Sbjct: 319 NACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIKGAREIDA 378
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGAC+IH N+++GE+ AK F ++P+N Y L
Sbjct: 379 KTWGSLLGACKIHGNLEVGEIAAKHLFEMEPENTGNYVLL 418
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AERIFG I+ + + M+A ++ +G +EA+E + + + G N V + L AC
Sbjct: 162 EAERIFGEILVPDSSCCAAMVACYSQNGYGKEAIEMYKQMKEKNLG-TNEVALVGALSAC 220
Query: 63 SYSGLIEEGIKVFD 76
G +E K+ D
Sbjct: 221 VQLGDVEMASKLID 234
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 18/146 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F + KNVV W+ +I + A+HG R AL F + S+G +PN VTFL +L+AC ++
Sbjct: 331 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLYACCHA 388
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--WGA 110
GL+EEG +F IMV ++++ EHYG VDLL + P V WG+
Sbjct: 389 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 448
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDP 136
LL ACR+H ++++G AK LDP
Sbjct: 449 LLAACRMHGDLELGAFAAKKILELDP 474
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
A IF G+ +K+VV WS MIA +A + EAL F+ + S +P+ +T LSIL
Sbjct: 255 AHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFH-DMQRSGVQPDEITMLSIL 309
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 18/146 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F + KNVV W+ +I + A+HG R AL F + S+G +PN VTFL +L+AC ++
Sbjct: 199 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLYACCHA 256
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--WGA 110
GL+EEG +F IMV ++++ EHYG VDLL + P V WG+
Sbjct: 257 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 316
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDP 136
LL ACR+H ++++G AK LDP
Sbjct: 317 LLAACRMHGDLELGTFAAKKILELDP 342
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF G+ K+VV WS MIA +A + EAL F+ + S KP+ +T LS++ AC+
Sbjct: 95 AHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFH-DMQRSGVKPDEITMLSVISACA 153
Query: 64 YSGLIEEG 71
G +E+
Sbjct: 154 NVGALEKA 161
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ ++V+ W+ MI + +HG EA+ +F+ + S +PN VTFL +L
Sbjct: 259 LENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAI-SFFRKMVASGVRPNAVTFLGLLL 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
CS+ GL++EG++ F+IM F L N++HYG VDL G+ E P
Sbjct: 318 GCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDP 377
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W LLG+C+IH N+++GE+ K L+ N Y
Sbjct: 378 VLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDY 414
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AER+F + +N+ W+ M++ A+HG AL F +++ +P+++TF+ +L
Sbjct: 416 IEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLS 475
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EP-- 105
AC+ +GL++ G + F M+ D+ + L+HYG +DLLA E EP
Sbjct: 476 ACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDG 535
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL AC+ H V+ GE VA+ F L+P+N + L
Sbjct: 536 AIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLL 575
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +F GI +K+V+ W+ MI ++ EAL F +++ S+ KPN+VTFL IL A
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLR-SNVKPNDVTFLGILHA 373
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
C+ G ++ G V + + + N + +D+ A
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYA 411
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F I K+VV W+ MI+ + G+ EA+ FY + ++ PN T + +L
Sbjct: 213 LDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY-EMQEANVLPNKSTMVVVLS 271
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE 104
AC ++ E G K V D NL+ +D+ GET+
Sbjct: 272 ACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETD 315
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++V+ W+ MI + HG +E L+ F + KPN++TFLS++ ACS
Sbjct: 501 ARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN-EMQKGAVKPNDITFLSVISACS 559
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW--------------- 108
+SG +EEG+ +F M D+ L+ ++HY VDLL W
Sbjct: 560 HSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVL 619
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH NV++GE A+ F LDP Y+ L
Sbjct: 620 GAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLL 656
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFAC 62
A +F G+ K VV W+ MI A +G+ EA F ++ +G+ P VT + +L AC
Sbjct: 300 ARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKML--DEGEVPTRVTMMGVLLAC 357
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLE 89
+ G +E G V ++ +LD N+
Sbjct: 358 ANLGDLERGWFVHKLL-DKLKLDSNVS 383
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F + K++V W+ ++A +A +G + AL+ L + + KP++VT +SIL
Sbjct: 196 IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQ-LVLQMQEAGQKPDSVTLVSILP 254
Query: 61 A 61
A
Sbjct: 255 A 255
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF +I +++V W+ MI +HG + AL+ + H SD PN+VTF S L ACS
Sbjct: 445 AYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSH-SDVCPNSVTFTSALSACS 503
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET---------------EPYVW 108
+SGL++EG+++F M DF +EH+ VDLLA + ++W
Sbjct: 504 HSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIW 563
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACR NV + +L A+ F L+P++ Y +L
Sbjct: 564 SALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTL 600
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF +I +++V W+ MI +HG + AL+ + H SD PN+VTF S L ACS
Sbjct: 643 AYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSH-SDVCPNSVTFTSALSACS 701
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET---------------EPYVW 108
+SGL++EG+++F M DF +EH+ VDLLA + ++W
Sbjct: 702 HSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIW 761
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACR NV + +L A+ F L+P++ Y +L
Sbjct: 762 SALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTL 798
>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
Length = 588
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F + +++VV W+ M+ + HG E ++ F + C + KP++VT L++L S
Sbjct: 271 SRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSM--CDEVKPDSVTLLAVLSGYS 328
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+ GL++EG+ +FD +V + LN EHYG +DLL E P+ +W
Sbjct: 329 HGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIW 388
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GE VA+ ++P+N Y L
Sbjct: 389 GSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVIL 425
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++F +K ++IWS MI AIHG R+AL+ F + + KP++V FL++L
Sbjct: 358 IEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEW-MKFTGTKPDSVVFLAVLN 416
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG + EG+K FD M + ++ +++HY + VD+L +
Sbjct: 417 ACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDF 476
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL ACR H NV++ EL +K L+PK+ Y L
Sbjct: 477 VVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFL 516
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A+ +F + +KNVV W+ M+ + +G +ALE F+ ++ +PN+ T +S L
Sbjct: 257 MGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLE-EGARPNDYTIVSALS 315
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDL 86
AC+ G ++ G+++ + + + F+L+L
Sbjct: 316 ACAKIGALDAGLRIHNYLSGNGFKLNL 342
>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 517
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ +F I + + W+ M+A++A HG R+A++ F L++H P++VTF +L
Sbjct: 195 LEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLS-PDHVTFTHLLN 253
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F+ M ++++ L+HY VDL+ E
Sbjct: 254 ACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSS 313
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ + ++G AK F L+P++ Y L
Sbjct: 314 GVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIML 353
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEG 71
++++V W+ +I+ +A G + E ++ G +PN VTFLS++ AC + G EEG
Sbjct: 3 ERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEG 62
Query: 72 IKVFDIMVHDFQLD--------LNLEHYGITVDLLAT 100
+ + +++ L+ +NL YG T DL+++
Sbjct: 63 VCIHGLVMKSGVLEEVKVVNALMNL--YGKTGDLISS 97
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + KN+V W+ MI H +G E L A++ + KP+ TFL++L C
Sbjct: 99 KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL-AYFNMSRWVGLKPDQATFLAVLRVCEDI 157
Query: 66 GLIE 69
G++
Sbjct: 158 GVVR 161
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F + +K+V+ W+ MI+ + +HG A+E F + S+ KPN +TFLS+L
Sbjct: 542 LEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQ-SNVKPNAITFLSLLS 600
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++G ++EG ++FD M + + + NL+H+ DLL ++ P
Sbjct: 601 ACTHAGYVDEGKQLFDRMQY-YSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDG 659
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH+ ++IG VAK DP+ND YY L
Sbjct: 660 GVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIML 699
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + +KN+V W+ +IA+ HG+ +++L F+ ++ S +P+ +TFL I+
Sbjct: 593 LKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY---- 106
+C + G ++EG++ F M D+ + EHY VDL T ++ P+
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG LLGACR+H NV++ E+ + LDP N YY
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYY 749
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D ++F ++ K+ VIW+ M+ +A G ++ F V+ PN VTF +L
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS-VMRMDQISPNAVTFDCVLS 247
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ LI+ G+++ ++V
Sbjct: 248 VCASKLLIDLGVQLHGLVV 266
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + + V W+ MI+ + G E+L FY +I S P+ +TF S+L +
Sbjct: 291 DDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMIS-SGVLPDAITFSSLLPS 349
Query: 62 CSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
S +E ++ IM H LD+ L
Sbjct: 350 VSKFENLEYCKQIHCYIMRHSISLDIFL 377
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ +F I + + W+ M+A++A HG R+A++ F L++H P++VTF +L
Sbjct: 789 LEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLS-PDHVTFTHLLN 847
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F+ M ++++ L+HY VDL+ E
Sbjct: 848 ACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSS 907
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ + ++G AK F L+P++ Y L
Sbjct: 908 GVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIML 947
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
MD A +F G+ +KNV WS + A++G + L+ F L+ DG PN VTF+S+L
Sbjct: 299 MDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQ--DGVTPNAVTFVSVL 356
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
CS G ++EG K FD M ++F ++ L+HYG VDL A +
Sbjct: 357 RGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAH 416
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LL A R++ N+++G L +K L+ N Y L
Sbjct: 417 AAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLL 457
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ +K+ + W+ MI+ +A G+ REAL F+L + K N V+ +S+L AC+
Sbjct: 201 ARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHL-MQLEGVKVNGVSMISVLSACT 259
Query: 64 YSGLIEEG 71
G +++G
Sbjct: 260 QLGALDQG 267
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + KN+V W+ MI H +G E L A++ + KP+ TFL++L C
Sbjct: 693 KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL-AYFNMSRWVGLKPDQATFLAVLRVCEDI 751
Query: 66 GLIE 69
G++
Sbjct: 752 GVVR 755
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++VV W+ MI + A HG +AL+ F + KPN+ TF ++
Sbjct: 381 IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKD-EGVKPNSFTFAAVFT 439
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL+EEG K F+ M+ D+ + +EH VDLL E +
Sbjct: 440 ACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDV 499
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALLG+CRIH N+++ ELVA+ F LDP+ +Y
Sbjct: 500 SVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFY 536
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + ++V +W+ +I +A G EAL A Y +H + P+N TF ++
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEAL-ALYSNMHGAGLFPDNYTFPFVVR 136
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDL 86
+C+ + EG +V +I+ H F D+
Sbjct: 137 SCAVLSALREGKEVHCNIVKHGFDSDV 163
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
E +FG ++ +N+V W+ +IA + + +E L F ++ S +PN VT +S+L AC+
Sbjct: 183 ELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVG-SGTQPNAVTLVSVLPACA 240
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F G++ +N+V W+ MIA++ + A++ F + + +T +S++
Sbjct: 280 VETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR-MQAEKVDFDYITMVSVIS 338
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----Y 106
AC+ G + G + +V L++N+ +D+ A E P
Sbjct: 339 ACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVV 397
Query: 107 VWGALLGACRIH 118
W +++GAC H
Sbjct: 398 SWTSMIGACASH 409
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 16/155 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F + ++NVV W+ MI +HA+HGQ EA+ F + + P+ +TFL +L +C
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQ-LKGENIVPDQITFLGLLASC 489
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL------------ATG---ETEPYV 107
S+SGL+ EG + F M ++++ +EHY +DLL A G E +
Sbjct: 490 SHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAG 549
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL ACR+H NV+IG VA LDP + Y
Sbjct: 550 WGALLNACRMHGNVEIGACVADKLVELDPSDSGIY 584
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++F + +NVV WS MIA+++ Q EA+ F +I + P + T +S+L
Sbjct: 327 LESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMI-AAGVDPIDATLVSVLS 385
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC+ G ++ G +++ + ++ L + +D+ A
Sbjct: 386 ACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFA 424
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F + +++VV W+ ++ +A G EA F ++ +PN VT ++ +
Sbjct: 194 LDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVS 253
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
A GL+ F IM+H +
Sbjct: 254 AIGQMGLL-----AFGIMLHKY 270
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A R+F +++++ W+ MI A+HGQ + A+ F ++ C G KP+ VTF+ +L
Sbjct: 346 LKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLL 405
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC++ GL+E+G F++M ++ ++ +EHYG VDLL E +
Sbjct: 406 NACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPD 465
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
+WG+LL C+IH + + E K +DP N Y
Sbjct: 466 EVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGY 502
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG------KPNNVTFL 56
+A +F + +++V W+ +IA + +G EAL F +I G +PN VT +
Sbjct: 240 NAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAV 299
Query: 57 SILFACSYSGLIEEG 71
L AC ++G++ G
Sbjct: 300 CSLSACGHTGMLRLG 314
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
D+ R F + ++NV+ W+ +I S A HG +A+ F + DG KPN+VTFLS+L A
Sbjct: 370 DSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARMEE--DGVKPNDVTFLSLLSA 427
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+SG++ +G++ F M+ + +D +HY VDLLA G E +
Sbjct: 428 CSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQNTNTECKSS 487
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++G +LGAC++H N+ +GE AK+ +DP++ Y L
Sbjct: 488 MYGTMLGACKVHGNMPLGETAAKNLLSIDPESSVNYAVL 526
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F G+ ++VV W+ M++ +A + + +EAL+ F ++ S +PN TF S + AC+
Sbjct: 67 ARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLR-SGARPNQFTFGSAVRACT 125
>gi|449516776|ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 427
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+ F + D++VV +S +I + A HG+ +EAL+ F + +G KPN + F+ +L
Sbjct: 232 IERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEE--EGIKPNQICFIGVL 289
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE-------------P 105
AC+++GLIE+G K F++M F ++ HY VDLL GE E
Sbjct: 290 NACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIKGAREIDA 349
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGAC+IH N+++GE+ AK F ++P+N Y L
Sbjct: 350 KTWGSLLGACKIHGNLEVGEIAAKHLFEMEPENTGNYVLL 389
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F K++++W+ +I+ +A HG EAL+ F+ + S PN VT ++IL ACS
Sbjct: 385 AKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFH-EMPLSGTMPNKVTLIAILTACS 443
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
Y G +EEG+++F+ M F + +EHY TVD+L T + + VW
Sbjct: 444 YGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVW 503
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGAC+ H + + E+ AK F ++P+N Y L
Sbjct: 504 GALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILL 540
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + D++ W GMI ++ G E EALE F + +P+ + +SIL C+
Sbjct: 284 ARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQ-MQRQGVRPSFPSLISILSVCA 342
Query: 64 YSGLIEEGIKV 74
++ G +V
Sbjct: 343 TLASLQYGRQV 353
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF + ++NV+ W+ MI + + + A + F ++ ++ V++ S+L
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTE-----VSWTSMLL 242
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ SG IE+ + F++M
Sbjct: 243 GYTLSGRIEDAEEFFEVM 260
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 16/148 (10%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+K+V W+ ++ +A G+ A+E F+ +I SD P+ +TF S+L ACS SG++ +G+
Sbjct: 559 EKDVASWNILLTGYAQQGKGGLAVELFHKMIE-SDVNPDEITFTSLLCACSRSGMVTDGL 617
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRI 117
+ F+ M H F + NL+HY VDLL + +P +WGALL ACRI
Sbjct: 618 EYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRI 677
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ NV++GEL A+ F +D K+ YY L
Sbjct: 678 YQNVELGELAAQHIFEMDTKSVGYYILL 705
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+AE +F + K++V W+ MI+ + +G +A+E + ++ H P+ +T S+L A
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH-EGVVPDEITIASVLSA 406
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
C+ GL+++G IM+H+F L Y I + L
Sbjct: 407 CAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSL 438
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F I +KNV+ W+ +I ++ + EAL F +I KPN+VT +S+L
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI--LSLKPNSVTLVSVLS 505
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 506 ACARIGALSCGKEI 519
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + K+++ W+ MI++ A HG +A E F +++ S P+ +TFL++L
Sbjct: 305 VDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLN-SGIAPDGITFLALLI 363
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY------------ 106
A ++ GL++EG ++F IM D+ ++ ++EHYG VD+L E Y
Sbjct: 364 AYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSND 423
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRI+ +V +GE V K L P YY L
Sbjct: 424 IVWGALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILL 463
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSILFA 61
A ++F + +K+VV W+ M++ ++ REALE F+ SD +P+ VT +S++ A
Sbjct: 207 ARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFW---EMSDAGIRPDEVTIVSVISA 263
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNV 121
C+ G +E G+ VH + +N +G V L G + A R+ +N+
Sbjct: 264 CTNLGDVETGMN-----VHSY---INENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNM 315
Query: 122 KIGELV 127
K L+
Sbjct: 316 KRKSLI 321
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 16/156 (10%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
+R+F + ++VV W+ +I+ + +HG ++A++ F +IH P+ ++F+++L ACS+
Sbjct: 341 QRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIH-QGVSPSYISFITVLGACSH 399
Query: 65 SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWG 109
+GL+EEG +F+ M+ +++ +EHY VDLL E P VWG
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWG 459
Query: 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LLG+CRIH NV++ E + F L+P+N Y L
Sbjct: 460 SLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLL 495
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI-HCSDGKPNNVTFLSILFAC 62
A +F + KN V WS MIA A + +ALE F L++ + PN+VT +++L AC
Sbjct: 237 ANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQAC 296
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVK 122
+ +E+G ++H + L L+ ++ L T G +L R+ N+K
Sbjct: 297 AGLAALEQG-----KLIHGYILRRQLDSILPVLNALITMYGR---CGEVLMGQRVFDNMK 348
Query: 123 IGELVA 128
++V+
Sbjct: 349 KRDVVS 354
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 16/144 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + K+VV W+ MI + IHG EAL+ F+ + C KP+++TF+++L
Sbjct: 307 LEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMC-CIGVKPSDITFVAVLT 365
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+ +G +VFD M + ++ +EHYG V+LL E +P
Sbjct: 366 ACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDP 425
Query: 106 YVWGALLGACRIHHNVKIGELVAK 129
+WG LL ACRIH NV +GE +A+
Sbjct: 426 VLWGTLLWACRIHSNVSLGEEIAE 449
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY------LVIHCSDGKPNNVT 54
+ +A +F G+ K+VV W+ MI +A HG EAL F +PN +T
Sbjct: 199 LPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEIT 258
Query: 55 FLSILFACSYSGLIEEG 71
+++L +C G +E G
Sbjct: 259 VVAVLSSCGQVGALECG 275
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ RIF + ++ V+ W+ M+ ++ HG+ RE L+ F L+ + KP++VT L++L CS
Sbjct: 520 SRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS 579
Query: 64 YSGLIEEGIKVF-DIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY-----V 107
+ GL ++G+ +F D+ +++ +EHYG VDLL +G E P+ +
Sbjct: 580 HGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAI 639
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGACR+H NV IGE + ++P N Y L
Sbjct: 640 WGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVIL 677
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 20/85 (23%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS-------------- 46
+ DA +F + ++NVV W+ MI++++ G +AL F+ + S
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353
Query: 47 ------DGKPNNVTFLSILFACSYS 65
+PN TF ++L +C+ S
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSS 378
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +K+V+ W+GMIA++A HG EA+ Y + KPN+VT++ +L ACS
Sbjct: 373 ARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIH-LYEKMQEKGYKPNDVTYVGLLSACS 431
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+SGL++EG+++F+ MV D + + EHY +DL + + EP VW
Sbjct: 432 HSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVW 491
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALLG C H N IG+L A++ +P N YT L
Sbjct: 492 NALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLL 528
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+ +F + +NV+ W+ M+ + Q AL+ F ++ +PN VTFL +
Sbjct: 269 LERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGML-VEGIRPNQVTFLGAVD 327
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDLNLE 89
ACS + EG +V ++ FQ D +E
Sbjct: 328 ACSNLAGLSEGQQVHQMICKTSFQFDTFIE 357
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+F D++VV W+ ++A++A G +A F D + N VT+ ++L
Sbjct: 51 VSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF----DRPDARRNVVTWTALLS 106
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G ++E +F M
Sbjct: 107 GYARAGRVDEAEALFQRM 124
Score = 35.8 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+D+AE +F + ++NVV W+ M+ ++ G+ R+A F DG P + ++ +
Sbjct: 114 VDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLF-------DGMPVRDAGSWNIL 166
Query: 59 LFACSYSGLIEEGIKVFDIM 78
L A SG +++ K+FD M
Sbjct: 167 LAALVRSGNMDKARKLFDRM 186
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 18/156 (11%)
Query: 4 AERIF--GGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A ++F G +++V W+G+IA++A HG +EA+ F+ + S KP++VT++ +L A
Sbjct: 370 ARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAIN-FFKEMRKSGFKPDDVTYVGLLSA 428
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--Y 106
CS++GL+EEG+K FD +V D + + +HY VDL ET+P
Sbjct: 429 CSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSAR 488
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALL C +H NVKIG+ AK ++P+N Y
Sbjct: 489 VWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTY 524
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + KNV+ W+ MI G+ EAL+ F ++ + KPN TF+S+L ACS
Sbjct: 268 ARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACS 327
Query: 64 YSGLIEEGIKVFDIM 78
+ EG +V I+
Sbjct: 328 NLAGLGEGQQVHQII 342
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE++F + +KNVV W+ MI +A +G+ A+ F + + N V++ +++
Sbjct: 146 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM-----PERNVVSWNTVMS 200
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ G IEE ++FD M
Sbjct: 201 MLAQCGRIEEARRLFDRM 218
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ RIF + ++ V+ W+ M+ ++ HG REA+E F L+ + KP++VTFL++L CS
Sbjct: 266 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 325
Query: 64 YSGLIEEGIKVFDIMVHDFQ-LDLNLEHYGITVDLLATG---------------ETEPYV 107
+ G+ + G+++F MV+ + +EHYG VDL E +
Sbjct: 326 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 385
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGACR+H NV IGE VA+ ++ +N Y L
Sbjct: 386 WGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVIL 423
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+ + ++NVV W+ MI+ ++ G EAL F ++ S PN TF ++L
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEML-MSGTAPNEFTFATVLT 119
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+C+ S + G ++ +++
Sbjct: 120 SCTSSSGFQLGRQIHSLVI 138
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F G+ +++VV + +I+ +A G + EAL+ F + + N VT+ S+L A
Sbjct: 164 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR-LQREGMRSNYVTYASVLTAL 222
Query: 63 SYSGLIEEGIKV 74
S ++ G +V
Sbjct: 223 SGLAALDHGRQV 234
>gi|357156964|ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 710
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + VV WS MI+++A HG+ +EAL+ F L + KPN+ T ++L AC
Sbjct: 509 AREVFDSLREPGVVSWSAMISAYANHGEHQEALKLFSL-MKGEGVKPNSFTVTAVLVACG 567
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG+K F+ + ++Q+ LEHY +D+L + + VW
Sbjct: 568 HSGLVDEGLKHFNSIAMEYQMSPTLEHYACMLDMLGRAGRLVEAYEIIRGMSVQPDKCVW 627
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GA LG CR+H N+++ E VA D F + +Y
Sbjct: 628 GAFLGGCRLHCNLELAEFVANDLFQSGSNDVTFY 661
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 18/156 (11%)
Query: 4 AERIF--GGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A ++F G +++V W+G+IA++A HG +EA+ F+ + S KP++VT++ +L A
Sbjct: 391 ARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAIN-FFKEMRKSGFKPDDVTYVGLLSA 449
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--Y 106
CS++GL+EEG+K FD +V D + + +HY VDL ET+P
Sbjct: 450 CSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSAR 509
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALL C +H NVKIG+ AK ++P+N Y
Sbjct: 510 VWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTY 545
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + KNV+ W+ MI G+ EAL+ F ++ + KPN TF+S+L ACS
Sbjct: 289 ARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACS 348
Query: 64 YSGLIEEGIKVFDIM 78
+ EG +V I+
Sbjct: 349 NLAGLGEGQQVHQII 363
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE++F + +KNVV W+ MI +A +G+ A+ F + + N V++ +++
Sbjct: 131 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM-----PERNVVSWNTVMS 185
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ G IEE ++FD M
Sbjct: 186 MLAQCGRIEEARRLFDRM 203
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+E++F + K+ V W+ M++ +A+HG A+ F L+ S + ++V+F+S+L AC
Sbjct: 687 SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE-SQVQIDSVSFVSVLSACR 745
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL+EEG K+F M + + +LEHY VDLL E + VW
Sbjct: 746 HXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVW 805
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG+CR+H NVK+GE+ L+P+N A++ L
Sbjct: 806 GALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A+++F G+ +++V WS +IA+ G EAL F + KPN VT +SIL A
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ-EMQNQKMKPNRVTLMSILPA 439
Query: 62 CSYSGLIEEGIKV 74
C+ L++ G +
Sbjct: 440 CADLSLLKLGKSI 452
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MDDAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ AE +F K+ V W+ +IA++ +G +EA+ +F+ + + PN+VTF+S+L
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFH-QMRLENFHPNSVTFVSVL 640
Query: 60 FACSYSGLIEEGI 72
A +Y EG+
Sbjct: 641 PAAAYLAAFREGM 653
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +F + + ++W+ MI ++ Q EALE +Y ++ +P+ TF +L A
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKA 138
Query: 62 CSYSGLIEEGI 72
C+ + ++EG+
Sbjct: 139 CTGALNLQEGV 149
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 16/148 (10%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+K+V W+ ++ +A G+ A+E F+ +I SD P+ +TF S+L ACS SG++ +G+
Sbjct: 559 EKDVASWNILLTGYAQQGKGGLAVELFHKMIE-SDVNPDEITFTSLLCACSRSGMVTDGL 617
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRI 117
+ F+ M H F + NL+HY VDLL + +P +WGALL ACRI
Sbjct: 618 EYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRI 677
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ NV++GEL A+ F +D K+ YY L
Sbjct: 678 YQNVELGELAAQHIFEMDTKSVGYYILL 705
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+AE +F + K++V W+ MI+ + +G +A+E + ++ H P+ +T S+L A
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH-EGVVPDEITIASVLSA 406
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
C+ GL+++G IM+H+F L Y I + L
Sbjct: 407 CAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSL 438
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F I +KNV+ W+ +I ++ + EAL F +I KPN+VT +S+L
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI--LSLKPNSVTLVSVLS 505
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 506 ACARIGALSCGKEI 519
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 16/155 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A RIF + ++ V W+GM+ ++A HG+ E L+ + K N +TF+S+L
Sbjct: 366 MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK-LIRKMEQEGVKLNGITFVSVLS 424
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
+CS++GLI EG + F + HD +++ EHYG VDLL E E Y+
Sbjct: 425 SCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEI 484
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
W +LLGACR+H ++ G+L A+ LDP N +
Sbjct: 485 VTWASLLGACRVHKDLDRGKLAARKLLELDPGNSS 519
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE I + ++ + W+ +I + +HG+ REALE Y + + VTF+S+L
Sbjct: 265 LDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALET-YQRLQLEAIPVDKVTFISVLN 323
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
AC+ S + EG M+H ++ L+ I + L ++ G++ A RI +
Sbjct: 324 ACTSSTSLAEG-----KMIHSNAVECGLDSDVIVKNALTNMYSK---CGSMENARRIFDS 375
Query: 121 VKIGELVA 128
+ I V+
Sbjct: 376 MPIRSAVS 383
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F G+ ++V W+ MI++++I + EA F + H + + + VTFLSIL
Sbjct: 61 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGE-RCDRVTFLSILD 119
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDL 86
AC ++ G V + I F+LDL
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDL 146
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
++A ++FG + KN++ WS +I + A HG EAL F ++ +G PN VTF+S+L
Sbjct: 163 ENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQ--EGILPNRVTFISLLN 220
Query: 61 ACSYSGLIEE 70
+ +EE
Sbjct: 221 GFTTPSGLEE 230
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 24/164 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK----PNNVTFL 56
+D+A ++F + +N + WS +I + A+HG+ +A+ F+L+ GK PN+V ++
Sbjct: 321 IDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM-----GKAGVTPNDVAYI 375
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
IL ACS++GL+EEG F MV L +EHYG VDLL
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
E + +W ALLGAC++H N+K+GE VA+ L P + Y +L
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVAL 479
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ +F + ++VV W+ MI+ +A +G EA+ F + S+ PN VT +S+L
Sbjct: 220 IKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQ-EMQSSNIDPNYVTLVSVLP 278
Query: 61 ACSYSGLIEEG 71
A + G +E G
Sbjct: 279 AIARIGALELG 289
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQE---REALEAFYLVIHCSDGKPNNVTFLS 57
+D A +F + + N W+ ++ A E EAL F ++ KPN TF S
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 58 ILFACSYSGLIEEGIKVFDIMV 79
+L AC+ + + EG ++ ++V
Sbjct: 128 VLKACARASRLREGKQIHGLIV 149
>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 776
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F + ++VV WS +I+SHA HG R+AL F ++ PN +TFLSIL
Sbjct: 468 VDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILT 527
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPY---------- 106
ACS+ GL++EG++ + IM ++ L ++H VDLL + E +
Sbjct: 528 ACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDA 587
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LL +CRIH +++ G+LVA L+P + A Y L
Sbjct: 588 VVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVIL 627
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS---HAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+ +A +F + D NV++ + MIA REAL Y + +P+ +F S
Sbjct: 263 LTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREAL-GLYSELQSRGMQPSEFSFSS 321
Query: 58 ILFACSYSGLIEEGIKVF-DIMVHDFQLDL 86
IL AC+ +G G ++ ++ H FQ D+
Sbjct: 322 ILRACNLAGEFGFGKQIHGQVLKHSFQGDV 351
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKPNNVTFLS 57
MD A +F + D+NV W+ MI +A+HG +EAL F HC S KPN VTF+
Sbjct: 251 MDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCF----HCMRESGVKPNYVTFIG 306
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------E 102
+L AC + G ++EG FD+M + + + L+HYG VDLL +
Sbjct: 307 VLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMK 366
Query: 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+GAC H NV + E VA++ L+P N+ Y L
Sbjct: 367 PNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVL 409
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 17/158 (10%)
Query: 4 AERI-FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+ F + ++N+V W+ ++A +A+HG+ EA+ F L+ C KP++V+F +L AC
Sbjct: 397 ASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ-KPDHVSFTCVLSAC 455
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+ GL EEG FD M + ++ +EHY V LL E + V
Sbjct: 456 TQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCV 515
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL +CR+H+ V +GE+ AK F L+P+N Y L
Sbjct: 516 WGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILL 553
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MDDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D+A +F +D NVV W+ MIAS + +G++ EALE F + KPN+VT +
Sbjct: 292 VDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFR-EMQIEGVKPNSVTIPCL 350
Query: 59 LFAC 62
L AC
Sbjct: 351 LPAC 354
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKPNNVTFLS 57
MD A +F + D+NV W+ MI +A+HG +EAL F HC S KPN VTF+
Sbjct: 251 MDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCF----HCMRESGVKPNYVTFIG 306
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------E 102
+L AC + G ++EG FD+M + + + L+HYG VDLL +
Sbjct: 307 VLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMK 366
Query: 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+GAC H NV + E VA++ L+P N+ Y L
Sbjct: 367 PNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVL 409
>gi|414878625|tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 465
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F + ++VV WS +I+SHA HG R+AL F ++ PN +TFLSIL
Sbjct: 157 VDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILT 216
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPY---------- 106
ACS+ GL++EG++ + IM ++ L ++H VDLL + E +
Sbjct: 217 ACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDA 276
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LL +CRIH +++ G+LVA L+P + A Y L
Sbjct: 277 VVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVIL 316
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ RIF + ++ V+ W+ M+ ++ HG REA+E F L+ + KP++VTFL++L CS
Sbjct: 733 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792
Query: 64 YSGLIEEGIKVFDIMVHDFQ-LDLNLEHYGITVDLLATG---------------ETEPYV 107
+ G+ + G+++F MV+ + +EHYG VDL E +
Sbjct: 793 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 852
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGACR+H NV IGE VA+ ++ +N Y L
Sbjct: 853 WGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVIL 890
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+ + ++NVV W+ MI+ ++ G EAL F ++ S PN TF ++L
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLT 586
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+C+ S + G ++ +++
Sbjct: 587 SCTSSSGFQLGRQIHSLVI 605
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F G+ +++VV + +I+ +A G + EAL+ F + + N VT+ S+L A
Sbjct: 631 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR-LQREGMRSNYVTYASVLTAL 689
Query: 63 SYSGLIEEGIKV 74
S ++ G +V
Sbjct: 690 SGLAALDHGRQV 701
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF + +KNVV W+ MI+ + +HGQ EAL+ Y + + P + TFLS+L+AC
Sbjct: 476 EARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALK-LYKDMMDAHLHPTSSTFLSVLYAC 534
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------------PY 106
S+ GL++EG VF M D+ + +EH VDLL G+ + P
Sbjct: 535 SHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG 594
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC +H + + +L ++ F L+P+N YY L
Sbjct: 595 IWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLL 633
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A R F + +K + W+ MI+ +A +G A+ A + + + +PN +T S L
Sbjct: 373 MDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAV-ALFQQMQALNVRPNPLTISSALS 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ G + G V I+ ++ +L+LN+ +D+
Sbjct: 432 ACAQLGALSLGKWVHKIIANE-KLELNVYVMTALIDM 467
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 20/145 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
++DA +F GI +K++V+W+ MI +A+HG R+ALE F + D P ++TF+ +
Sbjct: 303 LEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMF---VQLRDQGLWPTDITFIGL 359
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGET 103
L ACS+SGL+EEG F M H++ +D +EHYG VDLL T
Sbjct: 360 LNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITP 419
Query: 104 EPYVWGALLGACRIHHNVKIGELVA 128
+ +W +LL ACR+H N+ +G+ +A
Sbjct: 420 DAVMWVSLLAACRLHKNMALGQRIA 444
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F G+ K+ + W+ MI + HG+ EAL+ F ++ S +P+ VT + +L
Sbjct: 201 LDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLR-SSAEPDEVTVVLVLS 259
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT--------------GETEPY 106
A + G +E G + + + + LN+ VD+ G +
Sbjct: 260 AVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIV 319
Query: 107 VWGALLGACRIHHNVK 122
VW A++ +H + +
Sbjct: 320 VWNAMINGYAMHGDSR 335
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ +F G+ +++VV WS MI S++IHG+ +AL+ Y+ + KPN +TF S+L +CS
Sbjct: 261 SQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKV-YMEMLSQGVKPNWITFTSVLSSCS 319
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------ATG-----ETEP--YVW 108
+SGL+ EG K+F+ M + EHY VDLL A G EP VW
Sbjct: 320 HSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVW 379
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC +H+NV +GE+ A F L+ + + Y +L
Sbjct: 380 GALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTL 416
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA F +++K+V+ WS M+A A +G R+ALE F + S +PN +T L +LF
Sbjct: 302 LEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKE-SGSRPNYITVLGVLF 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E+G F M F +D EHYG +DLL E EP
Sbjct: 361 ACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDS 420
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+H NV + AK L+P++ Y L
Sbjct: 421 VTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILL 460
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++AE +F + ++NVV W+ MI++++ ++ AL+ L+ +PN T+ S+L
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDK-ALKCLILMFR-EGVRPNMFTYSSVLR 163
Query: 61 ACS--------YSGLIEEGIKVFDIMVHDFQLDL 86
AC + G+I+ G++ D+ V +D+
Sbjct: 164 ACDGLPNLRQLHCGIIKTGLES-DVFVRSALIDV 196
>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 500
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F G++++NVV WS +I+ + +HG+ +EAL Y + KPN +TF+S+L
Sbjct: 258 VDASRAVFAGMLERNVVSWSTLISCYGVHGKGKEALR-IYKEMLSQRVKPNGITFMSVLS 316
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV------------ 107
+CS+SGL+ +G +F+ M ++ EHY VD+L G E V
Sbjct: 317 SCSHSGLVTDGRMIFESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKMPMGPCA 376
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGA+L AC H+NV +GE+ A F L+ N + Y +L
Sbjct: 377 SAWGAVLSACATHNNVDVGEIAAYRLFELEEDNASNYVTL 416
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV-IHCSDGKPNNVTFLSIL 59
+D+A R+F + +K+ V+W+ M+ ++A G E LE F + + + + S+L
Sbjct: 154 LDNAARVFDEMPEKDSVVWNCMVTAYARAGMAAETLEIFRRAQVEVVNMARDLRSVPSVL 213
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC G + +G ++ MV D ++ +D+ A
Sbjct: 214 NACGKEGELMKGREIHGRMVRCLAFDSDVPIGNALIDMYA 253
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ + F +++VV+WS MIA++ HGQ EA++ F + + N +TFLS+L+
Sbjct: 353 LQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQ-ENLPGNEITFLSLLY 411
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL ++G+ +FD+MV + L L+HY VDLL + +
Sbjct: 412 ACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADA 471
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+IH N +I VA + +DP++ A Y L
Sbjct: 472 IIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLL 511
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D ER+ + D ++V W+ +++ A G L+ Y ++ + +P+ +TF+S++
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQ-YCMMKMAGFRPDKITFVSVIS 310
Query: 61 ACSYSGLIEEGIKV 74
+CS ++ +G ++
Sbjct: 311 SCSELAILCQGKQI 324
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 16/155 (10%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F + ++VV W+ +I+S+ IHG R+A++ F +I P+ ++F+S+L ACS++
Sbjct: 342 RVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMID-QGLSPSPISFVSVLGACSHA 400
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGA 110
GL+EEG +F+ MV ++ ++EHY VDLL E P VWG+
Sbjct: 401 GLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGS 460
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LLG+CRIH NV++ E F L+P N Y L
Sbjct: 461 LLGSCRIHCNVELAERATSRLFELEPTNAGNYVLL 495
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFA 61
+A R+F + KNVV WS MIA ++ +G+ EALE F +++ D PN+VT +S+L A
Sbjct: 236 NASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQA 295
Query: 62 CSYSGLIEEG 71
C+ +E+G
Sbjct: 296 CAALAALEQG 305
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFAC 62
A +F D++V+ W+ MI + HG + A+E F + S GK PN TFLS+L AC
Sbjct: 583 ARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMK--SSGKVPNETTFLSVLSAC 640
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YV 107
S++GL++EG + F M D+ L+ +EHYG VDLL EP V
Sbjct: 641 SHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISV 700
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+GA+LGAC++H NV++ E A+ F L+P+ Y+ L
Sbjct: 701 YGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLL 738
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A ++F G+ D+N V W+ MI +A +G EAL F ++ +G +V+ L+ L
Sbjct: 378 VDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMV--GEGVDVTDVSVLAAL 435
Query: 60 FACSYSGLIEEGIKVFDIMVH 80
AC G ++EG +V +++V
Sbjct: 436 HACGELGFLDEGRRVHELLVR 456
>gi|297737392|emb|CBI26593.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF + +++V+ W+ MI+ + +HG R A+E F+ + S KPN +TFL++L
Sbjct: 268 LEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIE-FFQQMEESSAKPNGLTFLAVLS 326
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
AC+++GL++EG +F M D+ + NL+HY VDLL E E V
Sbjct: 327 ACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDG 385
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL +C+IH+ +++G +AK D +ND YY
Sbjct: 386 GVWGALLSSCKIHNEIEMGIRIAKHAIDSDVENDGYY 422
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE+ FG + ++N W+ M + C D KPN+ T +S+L ACS
Sbjct: 188 AEKFFGRVNEQNFEAWNLMFS-------------------FCEDLKPNSATLVSVLSACS 228
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
+ +EEG KV + ++ + + NL +D+ A
Sbjct: 229 HLASLEEGEKVHNY-INGGKFEFNLSIATALIDMYA 263
>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g13880-like [Cucumis sativus]
Length = 839
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A F + + ++V WS MI S+A HG EAL F L+ C +PN+ FL +L ACS
Sbjct: 524 ANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGI-EPNHFAFLGVLIACS 582
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL+EEG++ FD M D+++ L+++H VDLL E EP +W
Sbjct: 583 HRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMW 642
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACRIH + + VA+ L+P A Y L
Sbjct: 643 RALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLL 679
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQER-------EALEAFYLVIHCSDGKPNNV 53
+DDA +IF ++DKNVV+++ M+A + QE +AL F+ + C KP+
Sbjct: 314 LDDAIQIFDQMVDKNVVMYNAMMA--GLLQQETIEDKCAYKALNLFFEMKSCGI-KPSMF 370
Query: 54 TFLSILFAC 62
T+ S+L AC
Sbjct: 371 TYSSLLKAC 379
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +K+V+ W+GMIA++A HG EA+ Y + + KPN+VT++ +L ACS
Sbjct: 373 ARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIH-LYEKMQENGYKPNDVTYVGLLSACS 431
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG+++F+ MV D + + EHY +DL + E VW
Sbjct: 432 HSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVW 491
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALLG C H N IG+L A++ +P N YT L
Sbjct: 492 NALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLL 528
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+ +F + +NVV W+ M+ + Q AL+ F ++ DG +PN VTFL +
Sbjct: 269 LERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGML--IDGIRPNQVTFLGAV 326
Query: 60 FACSYSGLIEEGIKVFDIMVHD-FQLDLNLE 89
ACS + EG +V ++ FQ D +E
Sbjct: 327 DACSNLAGLSEGQQVHQMICKTPFQFDTFIE 357
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+F D++VV W+ ++A++A G +A F D + N VT+ ++L
Sbjct: 51 VSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALF----DRPDARRNVVTWTALLS 106
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G ++E +F M
Sbjct: 107 GYARAGRVDEAEALFGRM 124
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+D+AE +FG + ++NVV W+ M+ ++ G+ +A F +G P + ++ +
Sbjct: 114 VDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLF-------NGMPVRDAGSWNIL 166
Query: 59 LFACSYSGLIEEGIKVFDIM 78
L A SG I++ K+FD M
Sbjct: 167 LAALVRSGNIDKARKLFDRM 186
>gi|115457336|ref|NP_001052268.1| Os04g0221300 [Oryza sativa Japonica Group]
gi|113563839|dbj|BAF14182.1| Os04g0221300, partial [Oryza sativa Japonica Group]
Length = 254
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 18/146 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F + KNVV W+ +I + A+HG R AL F + S+G +PN VTFL +L+AC ++
Sbjct: 45 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLYACCHA 102
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--WGA 110
GL+EEG +F IMV ++++ EHYG VDLL + P V WG+
Sbjct: 103 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 162
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDP 136
LL ACR+H ++++G AK LDP
Sbjct: 163 LLAACRMHGDLELGTFAAKKILELDP 188
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + ++NV W+ +++ +A HGQ A+E F + S +P+++TFL++L AC+
Sbjct: 362 ARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRE-SGARPDSITFLAVLHACA 420
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+E G + FD+M+ +++ +EHYG VDLL E VW
Sbjct: 421 HSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVW 480
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC IH N++IGE A L+ + Y L
Sbjct: 481 GALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVIL 517
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I +KN V+W+ +I + G E +E +H S+ KP+ T +L
Sbjct: 259 LDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIE-LLREMHLSNLKPDRFTVSGVLS 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACR 116
AC+ G G VH F E GI + T + Y +GA R
Sbjct: 318 ACAQMGAFNLG-----NWVHRFA-----EKKGIWDVFIGTALIDMYAKCGFIGAAR 363
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+++F K+VV W+ +I +A G ++ F ++ + +PN T + ++ AC
Sbjct: 158 NAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVAC 217
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT--------------GETEPYVW 108
S ++ G + M+ D L ++ ++L E VW
Sbjct: 218 IESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVW 277
Query: 109 GALL-GACRI 117
+L+ G C+I
Sbjct: 278 NSLICGYCQI 287
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 17/153 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + K+VV W+ M+ + A +G REA+ F + C N +TFLSIL
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV-HLNQITFLSILT 375
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + FD+M ++ L+ ++HY VDLL +
Sbjct: 376 ACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWGALLG+CR+H N KIG+ A F LDP +
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AIHG +EA F + + +PN++TF+++L ACS
Sbjct: 268 ATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKE-AGVEPNDITFVAMLSACS 326
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHYG +DLLA E P
Sbjct: 327 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCAL 386
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG CRIH N ++GE+V K +L P + Y L
Sbjct: 387 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 423
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA +F + ++VV W+ M+A +A G+ EAL A + + KP T +S+L A
Sbjct: 165 DDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL-ALFDQMRAVGVKPTEATVVSLLSA 223
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLN 87
C++ G +++G+ + ++D ++++N
Sbjct: 224 CAHLGALDKGLHLH-TYINDNRIEVN 248
>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 15/151 (9%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F I DK++ WS MI +AIHG EAL F+ ++ + KP+ V F SIL ACS+ G
Sbjct: 142 VFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVG 201
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+E+G+K F M DF + ++EHY VDLL + + VW
Sbjct: 202 LVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPF 261
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
L AC H N+++GEL A+ +++P + A Y
Sbjct: 262 LSACTKHCNLELGELAARKLLYMNPGSHANY 292
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +NV+ W+ MI + AIHG AL+ FY + + KPN VTF+ +L+ACS
Sbjct: 134 ARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKD-ENIKPNGVTFVGVLYACS 192
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+EEG + F M ++ + EHYG VDL ET P +W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+L+ AC+IH ++GE AK L+P +D L
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQL 289
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA IF + +K++V WS MI+ +A + +EAL F + KP+ VT LS++
Sbjct: 30 VEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFS-EMQVFGIKPDQVTILSVIS 88
Query: 61 ACSYSGLIEEG 71
AC+ G+++
Sbjct: 89 ACARLGVLDRA 99
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +++V W+ MI + HG + ALE F + KPN VTFLS++ ACS
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE-EMQKGTIKPNGVTFLSVISACS 550
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--VW 108
+SGL+E G+K F +M ++ ++L+++HYG VDLL +P V+
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH NV E A+ F L+P + Y+ L
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLL 647
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F G++++NVV W+ MI ++ + +EA+ F ++ +G KP +V+ + L
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML--DEGVKPTDVSVMGAL 344
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90
AC+ G +E G +H ++L L+
Sbjct: 345 HACADLGDLERG-----RFIHKLSVELGLDR 370
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A ++F + ++++V W+ ++A ++ +G R ALE + C + KP+ +T +S+L
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM--CEENLKPSFITIVSVL 243
Query: 60 FACSYSGLIEEGIKV 74
A S LI G ++
Sbjct: 244 PAVSALRLISVGKEI 258
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + + N+V + MIA +A HG E E+L F L++ D PN +TF+++L AC
Sbjct: 400 DARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQ-KDIAPNTITFIAVLSAC 458
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
++G +EEG K F++M F+++ EHY +DLL ET P+
Sbjct: 459 VHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIE 518
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR H NV++ A + L+P N A Y L
Sbjct: 519 WATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVML 556
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF + +++V+ W+ MI+ + +HG R A+E F + S KPN +TFL++L
Sbjct: 920 LEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEE-SSAKPNGLTFLAVLS 978
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
AC+++GL++EG +F M D+ + NL+HY VDLL E E V
Sbjct: 979 ACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDG 1037
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL +C+IH+ +++G +AK D +ND YY
Sbjct: 1038 GVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYY 1074
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF I +++V W+ +I+S+A G EAL + Y + D KPN+ T + +L ACS
Sbjct: 823 ARRIFCRI-PRDIVTWNTLISSYAHCGHFAEAL-SLYDKMVLEDLKPNSATLVXVLSACS 880
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
+ +EEG KV + ++ + + NL +D+ A
Sbjct: 881 HLASLEEGEKVHNY-INGGKFEFNLSIATALIDMYA 915
>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 823
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+DDA R F + D NV+ W+ +I++ A HG AL F+ +I S KPN+VT++++L
Sbjct: 501 LDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMI-LSGVKPNDVTYIAVL 559
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+ GL++EG + F M D +L +EHY VDLLA + +
Sbjct: 560 SACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKAD 619
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR + N++IGE+ A+ L+P++ A Y L
Sbjct: 620 ALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLL 660
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A ++F G++++ VV+W+ MI + G +A+E F ++ DG +P+ T S++ AC
Sbjct: 202 ARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLE--DGFEPDGYTMSSMVSAC 259
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNL 88
+ E+G +H L L L
Sbjct: 260 A-----EQGSAGLGQQLHSLVLRLGL 280
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G +K+V W+ M++ A+HG + +EAF ++ S KP+ VTF+++L CS+SG
Sbjct: 277 VFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD-SGIKPDEVTFVALLSGCSHSG 335
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+ EG+ FD M DF ++ +EH+G VDLL E +WGAL
Sbjct: 336 LVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGAL 395
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L ACR++ NV++GEL A+ +P N A Y +L
Sbjct: 396 LNACRVYKNVEVGELAAQWLIKDEPWNGALYMTL 429
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + +++VV +S M+A++ + REALE F + +P++ +S+L
Sbjct: 169 VEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKI-EPSDSCVMSVLC 227
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
AC+ G ++ G V+ + H
Sbjct: 228 ACANLGALDVGRWVYSFVCHS 248
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 19/148 (12%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEGI 72
+NVV W+ +I+ + +HG RE+L+ F +I +G PN +TF+S+L ACS+ GL+E+G
Sbjct: 523 RNVVSWNSLISGYGMHGFGRESLQVFEEMIE--EGISPNIITFVSVLGACSHVGLVEQGK 580
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRI 117
K+F+ MV ++ + EHY VDLL + P VWG+LLGACRI
Sbjct: 581 KLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRI 639
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYYTSL 145
H +V+ E+ F L+P+N Y L
Sbjct: 640 HGHVEYAEMACSHLFDLEPRNAGNYVLL 667
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFAC 62
AER+F + D+N+V WS MI +A + + +A++ F ++ +D PN++T +S+L AC
Sbjct: 409 AERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHAC 468
Query: 63 SYSGLIEEG 71
+ + +G
Sbjct: 469 AGVNALGQG 477
>gi|296082095|emb|CBI21100.3| unnamed protein product [Vitis vinifera]
Length = 278
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + ++NV W+ +++ +A HGQ A+E F + S +P+++TFL++L AC+
Sbjct: 41 ARKVFDQMNERNVATWNAILSGYASHGQAESAIELFS-EMRESGARPDSITFLAVLHACA 99
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+E G + FD+M+ +++ +EHYG VDLL E VW
Sbjct: 100 HSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVW 159
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC IH N++IGE A L+ + Y L
Sbjct: 160 GALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVIL 196
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF + +++V+ W+ MI+ + +HG R A+E F+ + S KPN +TFL++L
Sbjct: 553 LEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIE-FFQQMEESSAKPNGLTFLAVLS 611
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
AC+++GL++EG +F M D+ + NL+HY VDLL E E V
Sbjct: 612 ACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDG 670
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL +C+IH+ +++G +AK D +ND YY
Sbjct: 671 GVWGALLSSCKIHNEIEMGIRIAKHAIDSDVENDGYY 707
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF I +++V W+ +I+S+A G EAL + Y + D KPN+ T +S+L ACS
Sbjct: 456 ARRIFCRI-PRDIVTWNTLISSYAHCGHFAEAL-SLYDKMVLEDLKPNSATLVSVLSACS 513
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
+ +EEG KV + ++ + + NL +D+ A
Sbjct: 514 HLASLEEGEKVHNY-INGGKFEFNLSIATALIDMYA 548
>gi|413954745|gb|AFW87394.1| hypothetical protein ZEAMMB73_238054 [Zea mays]
Length = 430
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 18/158 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA R+F ++NV +W+ +I+ H G EAL AF+ + S +PN+VTFL++L A
Sbjct: 190 EDARRVFAAAPERNVTMWTAVISGHGQQGCVDEAL-AFFDRMAASGFRPNDVTFLAVLSA 248
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETEP 105
C++ GL+ EG++ F M D+ L HY VD+LA +
Sbjct: 249 CAHGGLVGEGLRRFSSMSSDYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQEHS 308
Query: 106 YVWGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYY 142
VWGA+LGACR H +V++ EL A+ F L P N Y
Sbjct: 309 VVWGAILGACRKHGGDVELVELAARRFFRLQPGNAGKY 346
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAI-HGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A+++F G+ ++VV W+ MI+ A G+ +E + + P+ TF S+L AC
Sbjct: 89 AQKMFDGMPQRSVVAWNAMISGCARGSGEAQERAVELFSAMRAEGLAPDQFTFASVLCAC 148
Query: 63 SYSGLIEEGIKVFDIMVHD 81
+ + G +V + V
Sbjct: 149 ARLAALGHGRRVHGVAVKS 167
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN V W+ +IA++ HG RE L+ F+ ++ + P++VTFL I+ AC
Sbjct: 603 ARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLR-AGVHPDHVTFLVIISACG 661
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+ EGI F M ++ + +EHY VDL ++ P+ VW
Sbjct: 662 HAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVW 721
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G LLGACR+H NV++ +L ++ LDPKN YY L
Sbjct: 722 GTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 758
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + + V W+G+IA + +G EA F +I + KP++VTF S L +
Sbjct: 299 DARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS-AGVKPDSVTFASFLPSI 357
Query: 63 SYSGLIEEGIKVFDIMV-HDFQLDLNLE 89
SG + +V +V H D+ L+
Sbjct: 358 LESGSLRHCKEVHSYIVRHRVPFDVYLK 385
>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Cucumis sativus]
Length = 746
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A F + + ++V WS MI S+A HG EAL F L+ C +PN+ FL +L ACS
Sbjct: 431 ANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGI-EPNHFAFLGVLIACS 489
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL+EEG++ FD M D+++ L+++H VDLL E EP +W
Sbjct: 490 HRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMW 549
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ALL ACRIH + + VA+ L+P A Y L
Sbjct: 550 RALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLL 586
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQER-------EALEAFYLVIHCSDGKPNNV 53
+DDA +IF ++DKNVV+++ M+A + QE +AL F+ + C KP+
Sbjct: 221 LDDAIQIFDQMVDKNVVMYNAMMA--GLLQQETIEDKCAYKALNLFFEMKSCGI-KPSMF 277
Query: 54 TFLSILFAC 62
T+ S+L AC
Sbjct: 278 TYSSLLKAC 286
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F +++K+V+ WS MI A HG+ EA++ F + PN +TFL +L
Sbjct: 294 IDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVA-PNEITFLGVLL 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL +EG+K FD+M + ++ +EHYG +DLL + +
Sbjct: 353 ACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDS 412
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH N++I + K L+P+ Y L
Sbjct: 413 RIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLL 452
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + KN V W+ ++ + +HG+ +EALE F + +P+ VT L +L+
Sbjct: 218 IDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGL-QPDGVTLLVVLY 276
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS+SG+I++GI+ F+ M +F + EHY VDLL + EP
Sbjct: 277 ACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSS 336
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL CRIH NV++GE AK L+ +ND YT L
Sbjct: 337 IVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLL 376
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F I +K++V+W+ MI ++ +HG R A++ F + S P+++ F+++L+
Sbjct: 635 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIA-PDHIAFVAVLY 693
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS+SGL+ EG + + M +++QL+ EHY VDLL E EP
Sbjct: 694 ACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTA 753
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW ALLGAC+IH N ++GE+ A+ +DP+N Y
Sbjct: 754 EVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNY 790
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
++ A ++F + +K +VV W+ MI++++ +GQ EAL F + S PN TF++ L
Sbjct: 231 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAAL 289
Query: 60 FACSYSGLIEEGI 72
AC S I++G+
Sbjct: 290 QACEDSSFIKQGM 302
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL-SILFACSYS 65
IF + DK+VV W+ +IA HA +G ALE F V +G +V + SIL ACS
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ--LEGIDLDVMMISSILLACSGL 497
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEH 90
LI ++ ++ DL L++
Sbjct: 498 KLISSVKEIHSYIIRKGLSDLVLQN 522
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DAE++F G+ K + W+ MI ++ +G+ +LE Y + S + TF IL AC
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLE-LYREMRVSGIPLDACTFPCILKAC 190
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D A R+F I K+VV W+ MI+ + +G EALE F+L+ + +P++++ +SI
Sbjct: 534 VDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE-TGVEPDSISLVSI 590
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A IF + D + + W+ M++ +G EAL+ FY + + KP+ V +SI+
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQ-FYHEMRDAGQKPDLVAVISIIA 391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
A + SG G+++ + + LD +L+ VD+ A
Sbjct: 392 ASARSGNTLHGMQIHAYAMKN-GLDSDLQVGNSLVDMYA 429
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AIHG +EA + F + S +PN++TF+++L ACS
Sbjct: 248 ATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS-VEPNDITFVAMLSACS 306
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHY +DLLA E P
Sbjct: 307 HAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSAL 366
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG CRIH N ++GE+V K +L P + Y L
Sbjct: 367 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 403
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 31/117 (26%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-------------YLVIHCSD 47
+D+A+R+F + ++N+V W+ M++ G EA F L +
Sbjct: 113 IDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172
Query: 48 GKPN-----------------NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN 87
GKPN T +S+L AC++ G +++G+ + ++D ++++N
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH-TYINDNRIEVN 228
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 17/153 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + K+VV W+ M+ + A +G REA+ F + C N +TFLSIL
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV-HLNQITFLSILT 375
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + FD+M ++ L+ ++HY VDLL +
Sbjct: 376 ACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWGALLG+CR+H N KIG+ A F LDP +
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467
>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
Length = 470
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
++ +F G+ ++VV WS MI S++IHG+ +AL+ + ++ S+G KPN +TF S+L +C
Sbjct: 261 SQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEML--SEGVKPNWITFTSVLSSC 318
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------ATG-----ETEP--YV 107
S+SGL+ EG K+F+ M + EHY VDLL A G EP V
Sbjct: 319 SHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASV 378
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H+NV +GE+ A F L+ + + Y +L
Sbjct: 379 WGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTL 416
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL-SIL 59
+DDA R+F + +++ V+W+ M+A +A G+ E E F + N + + S+L
Sbjct: 154 LDDAVRVFDEMTERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVL 213
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
C+ G + +G ++ MV D ++
Sbjct: 214 NICAKEGELMKGREIHGRMVRCLAFDSDI 242
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA F +I KN+V W+ MI +A +G +A+E F ++ + KP++VTF+++L
Sbjct: 570 MDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYML-TTKQKPDSVTFIAVLT 628
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
CS+SGL++E I F+ M ++ + +EHY +D L + PY
Sbjct: 629 GCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDA 688
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC +HHN ++GE AK F LDPKN + Y L
Sbjct: 689 ILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLL 728
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A + G + D+N V W+ +IA+ A EALE + ++ +G P N T S+L AC
Sbjct: 95 ARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQ--EGLAPTNFTLASVLSAC 152
Query: 63 SYSGLIEEGIKVFDIMV 79
+++G + + V
Sbjct: 153 GAVAALDDGRRCHGLAV 169
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF + +++VV W+ MI+ AIH EA + F+ + + P ++ S++ +C+
Sbjct: 472 AQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFD-FFKQMRENGMFPTESSYASMINSCA 530
Query: 64 YSGLIEEGIKVFDIMVHD 81
I +G ++ ++ D
Sbjct: 531 RLSSIPQGRQIHAQVLKD 548
>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
Length = 470
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
++ +F G+ ++VV WS MI S++IHG+ +AL+ + ++ S+G KPN +TF S+L +C
Sbjct: 261 SQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEML--SEGVKPNWITFTSVLSSC 318
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------ATG-----ETEP--YV 107
S+SGL+ EG K+F+ M + EHY VDLL A G EP V
Sbjct: 319 SHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASV 378
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H+NV +GE+ A F L+ + + Y +L
Sbjct: 379 WGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTL 416
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL-SIL 59
+DDA R+F + +++ V+W+ M+A +A G+ E E F + N + + S+L
Sbjct: 154 LDDAVRVFDEMTERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVL 213
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
C+ G + +G ++ MV D ++
Sbjct: 214 NICAKEGELMKGREIHGRMVRCLAFDSDI 242
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGI-ID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
++ A +IF I +D +++ +WS +IA + +HG A+ F ++ S KPN+VTF S+
Sbjct: 475 LESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQ-SGVKPNDVTFTSV 533
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-- 106
L +CS++G++++G+ +F M+ D Q N +HY VDLL +T P+
Sbjct: 534 LQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMP 593
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC +H NV++GE+ A+ F L+P N Y L
Sbjct: 594 GHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLL 635
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +F +++++VV W+ MI + ++G + AL F ++ +PN+VT IL
Sbjct: 273 MDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFK-IMQIEGLRPNSVTIALILL 331
Query: 61 ACSYSGLIEEG 71
AC+ +++G
Sbjct: 332 ACASLNNLKDG 342
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A F + KNVV W+ MI A HG EAL F ++H + +P+ +TFL +L
Sbjct: 269 VEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCVLC 328
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + F+IM D+ + ++HYG VDLL E
Sbjct: 329 ACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVECNA 388
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL ACR + NV++GE V K L+P + + Y L
Sbjct: 389 IIWRTLLAACRNYGNVELGEKVRKHLMELEPDHSSDYVLL 428
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +++V+ WS MI+ A +G +EAL+ F + S KPN +T + +LF
Sbjct: 309 LEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER-MKSSGTKPNYITIVGVLF 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E+G F M + +D EHYG +DLL E EP
Sbjct: 368 ACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+ N+ + E AK LDP++ YT L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + +NV+ W+ MI++++ ++ALE L++ + +PN T+ S+L
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLR 170
Query: 61 ACS--------YSGLIEEGIKVFDIMVHDFQLDL-----NLEHYGITVDLLATGETEPYV 107
+C+ + G+I+EG++ D+ V +D+ E D + TG+ V
Sbjct: 171 SCNGMSDVRMLHCGIIKEGLES-DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDA--IV 227
Query: 108 WGALLG 113
W +++G
Sbjct: 228 WNSIIG 233
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F + ++ + W+ M+ + HG +E ++ F + + KP++VT L++L CS
Sbjct: 297 SRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE--EVKPDSVTLLAVLSGCS 354
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL++EG+ +FD++V + +++ HYG +DLL E P +W
Sbjct: 355 HGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIW 414
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV +GE+VA+ ++P N Y L
Sbjct: 415 GSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVIL 451
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA + G+ ++NVV W+ MI+ ++ G+ EALE F ++ + K N T ++L
Sbjct: 92 LDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLR-AGCKANEFTLATVLT 150
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+C I++ +V ++V
Sbjct: 151 SCPVHQSIQQVEQVHSLVV 169
>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial [Vitis vinifera]
gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +F + +K++V W+ +IA A++G+ +EAL F+ ++ KPN++TFL++L
Sbjct: 410 MDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGL-KPNHITFLAVLQ 468
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++G +E+G + F++M ++++ L+HY DLL + P+
Sbjct: 469 ACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+IH NV IGE VA F L+P+ Y +
Sbjct: 529 GIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQM 568
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F ++ K V W+ MIA +A G EA+ F + KP+ VT +S++ C
Sbjct: 311 SARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFS-AMEAVGEKPDLVTIISLMSGC 369
Query: 63 SYSGLIEEG 71
+G +E G
Sbjct: 370 GQTGALELG 378
>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
Length = 609
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +F + +K++V W+ +IA A++G+ +EAL F+ ++ KPN++TFL++L
Sbjct: 410 MDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGL-KPNHITFLAVLQ 468
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++G +E+G + F++M ++++ L+HY DLL + P+
Sbjct: 469 ACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+IH NV IGE VA F L+P+ Y +
Sbjct: 529 GIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQM 568
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F ++ K V W+ MIA A G EA+ F + KP+ VT +S++ C
Sbjct: 311 SARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFS-AMEAVGEKPDLVTIISLMSGC 369
Query: 63 SYSGLIEEG 71
+G +E G
Sbjct: 370 GQTGALELG 378
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF K++++W+ +I+ +A HG EAL+ F + KPN VTF++ L ACSY+G
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVWGAL 111
++EEG+K+++ M F + HY VD+L T E + VWG+L
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGACR H + + E AK ++P+N Y L
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIEIEPENSGTYILL 541
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++N W +I H +G E EAL+ F L + +P T +SIL C+
Sbjct: 284 ARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFIL-MQKQGVRPTFPTLISILSVCA 342
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDL 86
+ G +V +V F +D+
Sbjct: 343 SLASLHHGKQVHAQLVRCQFDVDV 366
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +++V+ WS MI+ A +G +EAL+ F + S KPN +T + +LF
Sbjct: 309 LEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER-MKSSGTKPNYITIVGVLF 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E+G F M + +D EHYG +DLL E EP
Sbjct: 368 ACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+ N+ + E AK LDP++ YT L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + +NV+ W+ MI++++ ++ALE L++ + +PN T+ S+L
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLR 170
Query: 61 ACS--------YSGLIEEGIKVFDIMVHDFQLDL-----NLEHYGITVDLLATGETEPYV 107
+C+ + G+I+EG++ D+ V +D+ E D + TG+ V
Sbjct: 171 SCNGMSDVRMLHCGIIKEGLES-DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDA--IV 227
Query: 108 WGALLG 113
W +++G
Sbjct: 228 WNSIIG 233
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE++F + ++N+V W+ MI +A G + AL F +I PN++T ++++
Sbjct: 367 VEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVIT 426
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------ 106
ACS GL ++G ++FD M F ++ EHY VDLL A E Y
Sbjct: 427 ACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSI 486
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC++H ++G + ++ F LDP++ + L
Sbjct: 487 SVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLL 526
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ +N V W MI ++A HG E +AL A Y+ + +P + S+L C+
Sbjct: 269 ARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDAL-AVYMGARNTGEEPTDFMVSSVLTTCA 327
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++NV+ W+ ++ + I G+ E +A Y + + G PN V+ + AC+
Sbjct: 168 ARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKA-YFGLREAGGMPNVVSVCAFFNACA 226
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDLNLEH 90
+ + G + +V F +D+++ +
Sbjct: 227 GAMFLSLGEQFHGFVVTCGFDMDVSVSN 254
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++ ++F + +K+VV W+ +I++ ++G+ ++AL+AF + S P++V F++ +F
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQ-DMELSGVLPDSVAFIAFIF 632
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV--------- 107
ACS+SG+++EG++ FD M D+ L+ +EHY VDLLA + E ++
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL ACR N I + V+K L+ + YY
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYY 729
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A R+F + K+ V W+ MI +A G+ +++ F +I DG P+ ++ S +
Sbjct: 273 LREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI---DGFVPDMLSITSTI 329
Query: 60 FACSYSGLIEEGIKVFDIMV-HDFQLD-----LNLEHYGITVDLLATGE 102
AC SG ++ G V ++ F+ D + ++ Y DLLA E
Sbjct: 330 RACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +++V W+ MI + HG + ALE F + +PN VTFLS++ ACS
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE-EMQKGTIRPNGVTFLSVISACS 550
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--VW 108
+SGL+E G+K F +M ++ ++ +++HYG VDLL +P V+
Sbjct: 551 HSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH NV E VA+ F L+P++ Y+ L
Sbjct: 611 GAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLL 647
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A +F G++++NVV W+ MI ++ + +EA+ F ++ +G KP +V+ + L
Sbjct: 287 LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKML--DEGVKPTDVSVMGAL 344
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC+ G +E G + + V + +LD N+
Sbjct: 345 HACADLGDLERGRFIHKLSV-ELELDRNV 372
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
+A ++F + ++++V W+ ++A ++ +G R ALE L+ C + KP+ +T +S+L A
Sbjct: 188 EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLM--CEENLKPSFITIVSVLPA 245
Query: 62 CSYSGLIEEGIKV 74
S LI G ++
Sbjct: 246 VSALRLIRIGKEI 258
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +FG + + +V W+ MI A +G+ EAL ++ + KP+ T++S++
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALN-YFSQMQARTVKPDTFTYVSVIT 446
Query: 61 A 61
A
Sbjct: 447 A 447
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ RIF + ++++ W+ +I +A HG REA++ Y + + PN VTF+ +L AC
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIK-MYQHMESAGVLPNEVTFVGLLNAC 661
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYV 107
S++GL++EG K F M D+ L EHY VDLL TG E + +
Sbjct: 662 SHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+IH N +IG+ A+ F ++P N Y L
Sbjct: 722 WSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F + +N + W+GMIA +A +G+ EAL +H S P+ + SI F
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL-GLLQELHRSGMLPSLSSLTSIFF 427
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +E G +V + V
Sbjct: 428 ACSNIVALETGTQVHSLAV 446
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ RIF + ++++ W+ +I +A HG REA++ Y + + PN VTF+ +L AC
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIK-MYQHMESAGVLPNEVTFVGLLNAC 661
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYV 107
S++GL++EG K F M D+ L EHY VDLL TG E + +
Sbjct: 662 SHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+IH N +IG+ A+ F ++P N Y L
Sbjct: 722 WSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F + +N + W+GMIA +A +G+ EAL +H S P+ + SI F
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL-GLLQELHRSGMLPSLSSLTSIFF 427
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +E G +V + V
Sbjct: 428 ACSNIVALETGTQVHSLAV 446
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++NVV W+ MI+ + +HG R+A+E F + +PNN+TF+++L
Sbjct: 341 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF-TEMRAYGPRPNNITFVAVLS 399
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETE 104
AC++SGLI++G +VF M + L +EH VD+ E
Sbjct: 400 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 459
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VW ++LGACR+H N +G VA+ ++P+N +Y L
Sbjct: 460 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVML 500
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A+++F + + ++ W+ +I+ + +G +E++ F+L++ S +P++ T +S+L
Sbjct: 240 MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME-SGFQPDSATIVSLLS 298
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQ----LDLNL 88
+CS G ++ F +HD+ DLN+
Sbjct: 299 SCSQLGALD-----FGCWLHDYADGNGFDLNV 325
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F I KNV+ W+ +I ++ +HG +EA++ +++ KPN VTF+S+ ACS
Sbjct: 571 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFISVFAACS 629
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY--------------V 107
+SG+++EG+++F +M D+ ++ + +HY VDLL E Y
Sbjct: 630 HSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGA 689
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGA RIH+N++IGE+ A++ L+P ++Y L
Sbjct: 690 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
R+F G+ D+ + +W+ MIA ++ + ++EAL F + + N+ T ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 63 SYSG 66
SG
Sbjct: 416 VRSG 419
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY----LVIHCSDG------KP 50
+D A RIFG + D+++V W+ MI + +AL + L S G KP
Sbjct: 456 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 515
Query: 51 NNVTFLSILFACSYSGLIEEGIKV 74
N++T ++IL +C+ + +G ++
Sbjct: 516 NSITLMTILPSCAALSALAKGKEI 539
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F G+ ++V W+ MI+ +A +GQ EAL F +++ S +P++VTF+ +L
Sbjct: 314 MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLR-SGCRPDHVTFVGVLS 372
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
AC+++GL+++G+ +F + ++ ++ +HY +DLL+ T +P
Sbjct: 373 ACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNK 432
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH NV++ A+ F ++P+N A Y +L
Sbjct: 433 FLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTL 472
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F I KNV+ W+ +I ++ +HG +EA++ +++ KPN VTF+S+ ACS
Sbjct: 484 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFISVFAACS 542
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY--------------V 107
+SG+++EG+++F +M D+ ++ + +HY VDLL E Y
Sbjct: 543 HSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGA 602
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGA RIH+N++IGE+ A++ L+P ++Y L
Sbjct: 603 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 640
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
R+F G+ D+ + +W+ MIA ++ + ++EAL F + + N+ T ++ AC
Sbjct: 269 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 328
Query: 63 SYSG 66
SG
Sbjct: 329 VRSG 332
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY----LVIHCSDG------KP 50
+D A RIFG + D+++V W+ MI + +AL + L S G KP
Sbjct: 369 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 428
Query: 51 NNVTFLSILFACSYSGLIEEGIKV 74
N++T ++IL +C+ + +G ++
Sbjct: 429 NSITLMTILPSCAALSALAKGKEI 452
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F I KNV+ W+ +I ++ +HG +EA++ +++ KPN VTF+S+ ACS
Sbjct: 571 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFISVFAACS 629
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY--------------V 107
+SG+++EG+++F +M D+ ++ + +HY VDLL E Y
Sbjct: 630 HSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGA 689
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGA RIH+N++IGE+ A++ L+P ++Y L
Sbjct: 690 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
R+F G+ D+ + +W+ MIA ++ + ++EAL F + + N+ T ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 63 SYSG 66
SG
Sbjct: 416 VRSG 419
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY----LVIHCSDG------KP 50
+D A RIFG + D+++V W+ MI + +AL + L S G KP
Sbjct: 456 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 515
Query: 51 NNVTFLSILFACSYSGLIEEGIKV 74
N++T ++IL +C+ + +G ++
Sbjct: 516 NSITLMTILPSCAALSALAKGKEI 539
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ MI + A HG +AL+ F + KPN+ TF ++ AC
Sbjct: 342 AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKD-EGVKPNSFTFAAVFTACR 400
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL+EEG K F+ M+ D+ + +EH VDLL E + VW
Sbjct: 401 HSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVW 460
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLG+CRIH N+++ ELVA+ F LDP+ +Y
Sbjct: 461 GALLGSCRIHSNLELAELVAEKLFLLDPQTVTFY 494
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + ++V +W+ +I +A G EAL A Y +H + P+N TF ++
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEAL-ALYSNMHGAGLFPDNYTFPFVVR 136
Query: 61 ACSYSGLIEEGIKV-FDIMVHDFQLDL 86
+C+ + EG +V +I+ H F D+
Sbjct: 137 SCAVLSALREGKEVHCNIVKHGFDSDV 163
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
E +FG ++ +N+V W+ +IA + + +E L F ++ S +PN VT +S+L AC+
Sbjct: 183 ELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVG-SGTQPNAVTLVSVLPACA 240
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 24/164 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK----PNNVTFL 56
+D A ++F + +N + WS +I + A+HG+ +A+ F+L+ GK PN+V ++
Sbjct: 321 IDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM-----GKAGVTPNDVAYI 375
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
IL ACS++GL+EEG F MV L +EHYG VDLL
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
E + +W ALLGAC++H N+K+GE VA+ L P + Y +L
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVAL 479
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ +F + ++VV W+ MI+ +A +G EA+ F + S+ PN VT +S+L
Sbjct: 220 IKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQ-EMQSSNIDPNYVTLVSVLP 278
Query: 61 ACSYSGLIEEG 71
A + G +E G
Sbjct: 279 AIARIGALELG 289
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQE---REALEAFYLVIHCSDGKPNNVTFLS 57
+D A +F + + N W+ ++ A E EAL F ++ KPN TF S
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 58 ILFACSYSGLIEEGIKVFDIMV 79
+L AC+ + + EG ++ ++V
Sbjct: 128 VLKACARASRLREGKQIHGLIV 149
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++ ++F + +K+VV W+ +I++ ++G+ ++AL+AF + S P++V F++ +F
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQ-DMELSGVLPDSVAFIAFIF 632
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV--------- 107
ACS+SG+++EG++ FD M D+ L+ +EHY VDLLA + E ++
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALL ACR N I + V+K L+ + YY
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYY 729
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A R+F + K+ V W+ MI +A G+ +++ F +I DG P+ ++ S +
Sbjct: 273 LREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI---DGFVPDMLSITSTI 329
Query: 60 FACSYSGLIEEGIKVFDIMV-HDFQLD-----LNLEHYGITVDLLATGE 102
AC SG ++ G V ++ F+ D + ++ Y DLLA E
Sbjct: 330 RACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 17/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F G+ +K++V W+ +I A +G E+L F +I +D +PN+VTFL +L
Sbjct: 334 MRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIE-ADIRPNHVTFLGLLS 392
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------------TGETE 104
AC ++GL+ EG+++ D M D+ + +HY I +DLL G
Sbjct: 393 ACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDH 452
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALLGACRIH N+ + A+ F L+P N A Y
Sbjct: 453 VGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARY 490
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F + +KN V W+ +IA A +G+ EAL F + +G P+ TF S+L
Sbjct: 230 LEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMR--EEGIPPSAFTFASVL 287
Query: 60 FACSYSGLIEEGIKV 74
AC+ LI G ++
Sbjct: 288 SACADLALIARGKEI 302
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+R F G+ +K+VV W+ MIA + ++G +A++ F L + S P+ TF+S+L+
Sbjct: 376 LEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF-LQMKGSGLDPDESTFVSVLY 434
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++G++ EG+++F MV + NL+HY +D+L P+
Sbjct: 435 ACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+ LLGACRIH N+K+G +++ F ++P + YY L
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + K+V W+ M+ + A++ F ++ + K +++ + IL
Sbjct: 274 VDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILS 333
Query: 61 ACSYSGLIEEGIKV 74
+CS+SG +++G +V
Sbjct: 334 SCSHSGALQQGRRV 347
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA++IF KNVV W+ +I+ A + EA++ F +I + KPN VT S+L
Sbjct: 72 LADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMI-MGNFKPNAVTISSVLP 130
Query: 61 ACSYSGLIE 69
A + GLI
Sbjct: 131 AFANLGLIR 139
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ ++V+ W+ MI + +HG EA+ +F+ + S +PN +TFL +L
Sbjct: 259 LENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAI-SFFRKMVASGVRPNAITFLGLLL 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
CS+ GL++EG++ F+IM F L N++HYG VDL G+ E P
Sbjct: 318 GCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDP 377
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W LLG+C+IH N+++GE+ K L+ N Y
Sbjct: 378 VLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDY 414
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D R+F +++NV+ W+ +I+ + HG+ E L F+ + +PN VTFL+++ AC
Sbjct: 245 DGHRVFNKSLNRNVITWTALISGYGQHGRVAEVL-VFFSKMKTEGFRPNYVTFLAVISAC 303
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YV 107
S+ GL+ EG + F M D+ + +HY VDLL + P +
Sbjct: 304 SHGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEFVQNSPCGEHSVI 363
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR+H N+ + AK F L+P+N Y L
Sbjct: 364 WGALLGACRVHGNIDMLRFAAKKYFDLEPENAGKYVVL 401
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +F + K+++ W+ MIA + G E E L Y + S P+ TF S+
Sbjct: 142 LDTSHILFDDLSKKSLISWNAMIAGYVQKGLEEEGLN-LYDEMRQSGLTPDQYTFASVFR 200
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ +E+G + +M+
Sbjct: 201 ACATLATLEKGKQAHCVMI 219
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ +F G+ ++ +V W+ +I + +HG A++ F +I S +P+ F+ +L
Sbjct: 295 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR-SGIEPDGTAFVCVLS 353
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL ++G++ F +M ++QL+ EHY VDLL E+ P
Sbjct: 354 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDG 413
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC+IH NV++ EL + L+P+N YY L
Sbjct: 414 AVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLL 453
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R F + N+V W+ ++ +A+HG+ +E +E F++++ S KP+ VTF +L AC+
Sbjct: 430 ARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQ-SGQKPDLVTFTCVLSACA 488
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY-----VW 108
+GL EEG + ++ M + ++ +EHY V LL+ G+ E P+ VW
Sbjct: 489 QNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVW 548
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL +CR+H+N+ +GE+ A+ F L+P N Y
Sbjct: 549 GALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNY 582
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + D++VV+WS MIA ++ G EA E F + +PN V++ +L
Sbjct: 157 DARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG-EMRSGGVEPNLVSWNGMLAGF 215
Query: 63 SYSGLIEEGIKVFDIM-VHDFQLDLNLEHYGITVD--LLATGETEPYVWGALLGACRIHH 119
+G +E + +F +M V F D G TV L A G E V GA + H
Sbjct: 216 GNNGFYDEAVGMFRMMLVQGFWPD------GSTVSCVLPAVGCLEDVVVGAQV------H 263
Query: 120 NVKIGELVAKDPFHLDPKNDAY 141
I + + D F + D Y
Sbjct: 264 GYVIKQGLGSDKFVVSAMLDMY 285
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
+D A +F D+ NVV W+ +IAS + +G++ EALE F + +PN VT
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFR-DMQAYGVEPNAVTIP 380
Query: 57 SILFAC 62
S++ AC
Sbjct: 381 SLIPAC 386
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +NV+ WS +I +A++G+ +AL A + + +PN VTFL++L
Sbjct: 287 MDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL-ALFSRMKNQGVQPNYVTFLAVLS 345
Query: 61 ACSYSGLIEEGIKVFDIMVH--DFQLDLNLEHYGITVDLLATG---------------ET 103
ACS++G + EG + F+ M D + EHY VDLL E
Sbjct: 346 ACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEA 405
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+P +WGALLGAC IH N+K+G+ VA F L P+ +Y+ L
Sbjct: 406 DPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLL 447
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +FG ++++++V W+ +IA G +AL++F + + KP++VT +S L AC
Sbjct: 189 AEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFR-EMGMAGIKPDSVTIVSALSACG 247
Query: 64 YSGLIEEGIKVFD----------IMVHDFQLDL 86
+ G +E G ++++ I+VH+ +LD+
Sbjct: 248 HLGCLETGEEIYEFAREEGIDSNIIVHNARLDM 280
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + KN+ W+ +I A HG +EAL+ F + KPN VTF+S+
Sbjct: 1090 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF-AKMEMESVKPNTVTFVSVFT 1148
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV-------------DLLATGETEP-- 105
AC+++GL+EEG +++ M+ D+ + N+EHYG V +L+ + E EP
Sbjct: 1149 ACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNA 1208
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL CRIH N++I E+ L+P N YY
Sbjct: 1209 VIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYY 1245
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
AE +F + K+++ W+ MI ++ + + REA+ FY ++ +G P+ VT +++ AC
Sbjct: 992 AESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMME--EGIIPDEVTMSTVISAC 1049
Query: 63 SYSGLIEEGIKVFDIMVHD-FQLDL 86
++ G++E G +V V + F LD+
Sbjct: 1050 AHLGVLEIGKEVHMYTVQNGFVLDV 1074
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++NVV W+ MI+ + +HG R+A+E F + +PNN+TF+++L
Sbjct: 277 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF-TEMRAYGPRPNNITFVAVLS 335
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETE 104
AC++SGLI++G +VF M + L +EH VD+ E
Sbjct: 336 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 395
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VW ++LGACR+H N +G VA+ ++P+N +Y L
Sbjct: 396 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVML 436
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A+++F + + ++ W+ +I+ + +G +E++ F+L++ S +P++ T +S+L
Sbjct: 176 MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME-SGFQPDSATIVSLLS 234
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQ----LDLNL 88
+CS G ++ F +HD+ DLN+
Sbjct: 235 SCSQLGALD-----FGCWLHDYADGNGFDLNV 261
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+ +F G+ ++ +V W+ +I + +HG A++ F +I S +P+ F+ +L
Sbjct: 304 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR-SGIEPDGTAFVCVLS 362
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL ++G++ F +M ++QL+ EHY VDLL E+ P
Sbjct: 363 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDG 422
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC+IH NV++ EL + L+P+N YY L
Sbjct: 423 AVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLL 462
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ ++F G+ +K+ W+ MI + IHG +EA++ F + + P+++TFL +L AC
Sbjct: 650 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFE-EMQRTGHNPDDLTFLGVLTAC 708
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPY 106
++SGLI EG++ D M F L NL+HY +D+L E +
Sbjct: 709 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 768
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH N+++GE VA F L+P+ Y L
Sbjct: 769 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLL 807
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F GI K V W+ +I HA R +L+A +L + S P++ T S+L ACS
Sbjct: 449 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA-HLQMKISGLLPDSFTVCSLLSACS 507
Query: 64 YSGLIEEGIKVFDIMVHDF 82
+ G +V ++ ++
Sbjct: 508 KLKSLRLGKEVHGFIIRNW 526
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DD+ +F + KN+ W+ +I+S++ + E LE F +I +D P++ T+ ++ A
Sbjct: 137 DDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKA 196
Query: 62 CSYSGLIEEGI 72
C +G+ + GI
Sbjct: 197 C--AGMSDVGI 205
>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ ++F G+ +K+ W+ MI + IHG +EA++ F + + P+++TFL +L AC
Sbjct: 400 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFE-EMQRTGHNPDDLTFLGVLTAC 458
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPY 106
++SGLI EG++ D M F L NL+HY +D+L E +
Sbjct: 459 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 518
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH N+++GE VA F L+P+ Y L
Sbjct: 519 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLL 557
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F GI K V W+ +I HA R +L+A +L + S P++ T S+L ACS
Sbjct: 199 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA-HLQMKISGLLPDSFTVCSLLSACS 257
Query: 64 YSGLIEEGIKVFDIMVHDF 82
+ G +V ++ ++
Sbjct: 258 KLKSLRLGKEVHGFIIRNW 276
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F K++++W+ +I+ +A HG EAL+ F+ + S PN VT ++IL ACS
Sbjct: 385 AKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFH-EMPSSGTMPNKVTLIAILTACS 443
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
Y+G +EEG+++F+ M F + +EHY TVD+L T + + VW
Sbjct: 444 YAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVW 503
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGAC+ H + + E+ AK F +P N Y L
Sbjct: 504 GALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLL 540
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF + ++NVV W+ MI + + + A + F ++ ++ V++ S+L
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE-----VSWTSMLL 242
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ SG IE+ + F++M
Sbjct: 243 GYTLSGRIEDAEEFFEVM 260
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F I +NV+ W+ ++ ++ +HG ++A++ +++ KPN VTF+S+ ACS
Sbjct: 567 SRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMM-VQGVKPNEVTFISVFAACS 625
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY--------------V 107
+SG++ EG+K+F M D+ ++ + +HY VDLL A E Y
Sbjct: 626 HSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGA 685
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGACRIH+N++IGE+ A++ L+P ++Y L
Sbjct: 686 WSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 723
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS--------------HAIHGQEREALEAFYLVIHCS 46
+D A+RIFG + D+++V W+ +I H + ER+A E V
Sbjct: 452 IDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRV---- 507
Query: 47 DGKPNNVTFLSILFACSYSGLIEEGIKV 74
KPN++T ++IL +C+ + +G ++
Sbjct: 508 SLKPNSITLMTILPSCAALSALAKGKEI 535
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++F I ++N V W+ +I+S + ALEAF ++ D +P++ T +S+ ACS
Sbjct: 150 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-EDVEPSSFTLVSVALACS 206
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R+F G+ D+ + +W+ MI +A + + EAL F + + N+ T ++ AC S
Sbjct: 355 RVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRS 414
Query: 66 G 66
G
Sbjct: 415 G 415
>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
Length = 352
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+R+F + +K+V WS MI A HG E+L F +I S+G KPN VTF+ +L
Sbjct: 31 IESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMI--SEGMKPNGVTFVGVL 88
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
AC++ GL+ EG K F M ++ +EHYG VDLL T E +
Sbjct: 89 IACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPD 148
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACRIH NV+I E LDP D +Y L
Sbjct: 149 TIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLL 189
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA ++F GI D NV+ W+ MI+++ +HG + +E F ++ S+G +P++VTF+ +L A
Sbjct: 501 DAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHML--SEGIEPSHVTFVCVLSA 558
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS++G +EEG+ F+ M ++ EHY VDLL + P
Sbjct: 559 CSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 618
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR + N+K+G A+ F ++P N Y L
Sbjct: 619 VWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLL 657
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F + ++N+V W+ MI + A+ F V+ PN V+ S+L
Sbjct: 296 MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 355
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ G + G +V ++V
Sbjct: 356 ACANMGGLNFGRQVHGVVV 374
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+ +F + +N V W+ ++ + +HG+ +AL F + P+ +TFL +L+
Sbjct: 665 VDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPL-VPDGITFLVVLY 723
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG+++ GI F+ M DF +D EHY VDL E P
Sbjct: 724 ACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTP 783
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL ACR+H NV++GE A L+ ND YT L
Sbjct: 784 VVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLL 823
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
ER+ I+ +VV W+ +I +A GQ EAL+ F + C +PN VT +S+L AC
Sbjct: 454 ERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS-RPNVVTLVSLLSACVS 512
Query: 65 SGLIEEG 71
G + G
Sbjct: 513 VGALLHG 519
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A ++F + D++VV W+ MI +A HG AL+ F + KPN+ T L
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALV 621
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
AC+ + G +V ++ +F
Sbjct: 622 ACARLAALRFGRQVHAYVLRNF 643
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+++F + K + I++ MI+++A+HGQ EAL A + + +P+++TF SIL
Sbjct: 606 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEAL-ALFKHLQKEGIEPDSITFTSILS 664
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG+ +F MV ++ +EHYG V LL+ + +
Sbjct: 665 ACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDA 724
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++ G+LL ACR HH +++GE ++K F L+P N Y +L
Sbjct: 725 HILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVAL 764
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F +++KNVV W+ MI + +G +EA++ FY + +P VT S L
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFY-DMRVEGIEPTRVTVASFLS 291
Query: 61 ACSYSGLIEEG 71
A + + EG
Sbjct: 292 ASANLDALIEG 302
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F ++++V+W+ ++A++A G EAL+ FY + PN +++ S++
Sbjct: 435 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFY-QMQFDSVPPNVISWNSVIL 493
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G + E +F M
Sbjct: 494 GFLRNGQVNEAKDMFSQM 511
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE +F +++K+VV W+ +I+S+ H Q +AL +L + + + ++VT SIL
Sbjct: 334 IEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHL-MRSENLRFDSVTLSSILS 392
Query: 61 ACSYSGLIEEG 71
A + + I+ G
Sbjct: 393 ASAVTSNIKLG 403
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+R+F + +K+V WS MI A HG E+L F +I S+G KPN VTF+ +L
Sbjct: 171 IESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMI--SEGMKPNGVTFVGVL 228
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
AC++ GL+ EG K F M ++ +EHYG VDLL T E +
Sbjct: 229 IACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPD 288
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACRIH NV+I E LDP D +Y L
Sbjct: 289 TIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLL 329
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF G D++ WS MI+++A + +EALE + +H + P+ +T +S++ ACS
Sbjct: 73 AREIFDGTEDRDAFSWSSMISAYAKSRRSKEALE-LWREMHAASIIPDCITLVSVVSACS 131
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
G + G +V V +++L+L+ +D+ A
Sbjct: 132 DLGALAVGAEVHRF-VESNRIELDLKLGTALIDMYA 166
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ +KNV +S MIA A HG+ EA+ F +++ ++ +PN+VTF+ +L
Sbjct: 325 IDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLT 384
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS++G++ EG F M + + + +HY VDLL P+
Sbjct: 385 ACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHG 444
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH +I ++VA+ F L+P++ Y L
Sbjct: 445 GVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLL 484
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +F + ++ + W+ MI AIHG+ +ALE F + KPN +T + +L
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS-KLQEGRMKPNGITLVGVLT 403
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++G +++G+++F M + +D LEHYG VDLL +
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N + E V K L+P+N Y L
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLL 503
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + +++ + WS M+ + G+ +EALE F + + +P S+L
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ-MQREETRPGRFILSSVLA 302
Query: 61 ACSYSGLIEE-------------------GIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101
ACS G I++ G + D+ +LD+ E +
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFE------EMK 356
Query: 102 ETEPYVWGALLGACRIH 118
E E + W A++G IH
Sbjct: 357 EREIFTWNAMIGGLAIH 373
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY--LVIHCSDGKPNNVTFLSIL 59
D A ++F I + NV IW+ +I + + +A+ FY +VI D +PN T+ ++
Sbjct: 84 DFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVI---DARPNKFTYPTLF 139
Query: 60 FACSYSGLIEEGIKVFD-IMVHDFQLDLNLEHYGITV-----------DLLATGETEPYV 107
ACS + ++EG ++ ++ H D++++ GI + + +GE++
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVC 199
Query: 108 WGALL 112
W ++
Sbjct: 200 WNTMI 204
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE IF + K++V W+ MI ++ +HG AL F+ + PN +TF+S++
Sbjct: 463 IDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAITFVSVIS 522
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPY---------- 106
ACS+SGLI EG K F+ M D ++ +++HY VDLL E E +
Sbjct: 523 ACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEEFIRDMPVHPNS 582
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LL AC++H NV + E AK+ L+P++D + SL
Sbjct: 583 SIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSL 622
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFA 61
A R+ G+ ++VV W+ +I+ ++G E LE F +++ DG PNNVT LS++ A
Sbjct: 189 SARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLE--DGVLPNNVTMLSVIQA 246
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-----ATGETEPYVW 108
CS G E +F VH + L LEH V+ L G E +W
Sbjct: 247 CSLMGASE----LFSP-VHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIW 293
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
+D A +F G+ K++V W+ +I+ A + EA+E F V+H + G P+ VT LSI
Sbjct: 360 IDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFS-VLHAAAGGLAPDFVTVLSI 418
Query: 59 LFACSYSGLIEEGIKVFD-IMVHDFQLDLNLEHYGITV 95
L ACS +GL+ +G + IM F D+++ + IT+
Sbjct: 419 LQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNALITM 456
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ ++F G+ +K+ W+ MI + IHG +EA++ F + + P+++TFL +L AC
Sbjct: 1005 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFE-EMQRTGHNPDDLTFLGVLTAC 1063
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPY 106
++SGLI EG++ D M F L NL+HY +D+L E +
Sbjct: 1064 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 1123
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH N+++GE VA F L+P+ Y L
Sbjct: 1124 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLL 1162
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F GI K V W+ +I HA R +L+A +L + S P++ T S+L ACS
Sbjct: 804 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA-HLQMKISGLLPDSFTVCSLLSACS 862
Query: 64 YSGLIEEGIKVFDIMVHDF 82
+ G +V ++ ++
Sbjct: 863 KLKSLRLGKEVHGFIIRNW 881
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DD+ +F + KN+ W+ +I+S++ + E LE F +I +D P++ T+ ++ A
Sbjct: 492 DDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKA 551
Query: 62 CSYSGLIEEGI 72
C +G+ + GI
Sbjct: 552 C--AGMSDVGI 560
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +K+VV W+ MI +HG + AL+ +I S PN+ TF S+L ACS
Sbjct: 418 AYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMI-LSGIFPNSTTFTSVLSACS 476
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGL++EG ++F M D+ + +EHY VD+LA E + +W
Sbjct: 477 HSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIW 536
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR + N+ G L A+ ++PK +Y +L
Sbjct: 537 GALLAACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTL 573
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +F + ++ + W+ MI AIHG+ +ALE F + KPN +T + +L
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS-KLQEGRMKPNGITLVGVLT 403
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++G +++G+++F M + +D LEHYG VDLL +
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N + E V K L+P+N Y L
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLL 503
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + +++ + WS M+ + G+ +EALE F + + +P S+L
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ-MQREETRPGRFILSSVLA 302
Query: 61 ACSYSGLIEE-------------------GIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101
ACS G I++ G + D+ +LD+ E +
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFE------EMK 356
Query: 102 ETEPYVWGALLGACRIH 118
E E + W A++G IH
Sbjct: 357 EREIFTWNAMIGGLAIH 373
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY--LVIHCSDGKPNNVTFLSIL 59
D A ++F I + NV IW+ +I + + +A+ FY +VI D +PN T+ ++
Sbjct: 84 DFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVI---DARPNKFTYPTLF 139
Query: 60 FACSYSGLIEEGIKVFD-IMVHDFQLDLNLEHYGITV-----------DLLATGETEPYV 107
ACS + ++EG ++ ++ H D++++ GI + + +GE++
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVC 199
Query: 108 WGALL 112
W ++
Sbjct: 200 WNTMI 204
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 19/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F + ++ V W+ +I+ H IHG + L+ F ++ +G KP++VTF+S+L A
Sbjct: 340 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML--DEGVKPDHVTFVSLLSA 397
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+SG +EEG F +M ++ + +L+HYG VDLL + +
Sbjct: 398 CSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDAS 456
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+++G+ + F +D KN YY L
Sbjct: 457 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 495
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I K+V+ W+ +I +A +G EA+E + ++ C + PN T++SIL
Sbjct: 236 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 295
Query: 61 ACSYSGLIEEGIKV 74
A ++ G +++G+K+
Sbjct: 296 AYAHVGALQQGMKI 309
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F I K+V W+ MI+++ +G EA+ FY ++ S+ +P+ TF +L AC G
Sbjct: 74 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GT 130
Query: 68 IEEGIKV 74
+ +G K+
Sbjct: 131 LVDGRKI 137
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 16/155 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+R+F I ++ V ++ +IA + I G+ REAL+ F + KP++VT +++L AC
Sbjct: 485 EAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFD-EMKKRHIKPDHVTMVAVLSAC 543
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S+SGL+ EGIK+F++M + + LEH+ VDL PY +
Sbjct: 544 SHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAM 603
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W LLGACRIH N +IGE A+ + P+N YY
Sbjct: 604 WATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYY 638
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F +++++ V W+ MI+ +A G +EA E F + + N +T+ +I
Sbjct: 245 LSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG-KMRVEGIELNIITWNTIAG 303
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
C SG EE +++ ++ YGI +D +AT + G LGAC
Sbjct: 304 GCVQSGNFEEALELLS----------HMRSYGIDMDSVAT------IIG--LGACSHIGA 345
Query: 121 VKIGE 125
+K+G
Sbjct: 346 IKLGR 350
>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
Length = 709
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE IF + K++V W+ MI ++ +HG AL F+ + PN +TF+S++
Sbjct: 466 IDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTPAPNAITFVSVIS 525
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPY---------- 106
ACS+SGL+ EG K F+ M D ++ +++HY VDLL E E +
Sbjct: 526 ACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACVVDLLGRSGRFAEAEQFIRDMPVRPDS 585
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LL AC++H NV + E AK+ L+P++D + SL
Sbjct: 586 TIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSL 625
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFA 61
A R+ G+ ++VV W+ +++ ++ EAL F +++ DG PNNVT LS++ A
Sbjct: 191 SARRLLLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLE--DGVLPNNVTMLSVIQA 248
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
C+ G E +F VH + L LEH V+ L
Sbjct: 249 CALMGASE----LFGP-VHALVVLLELEHDASVVNSL 280
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---KPNNVTFLS 57
+D A +F G+ K++V W+ +I+ A + EA++ F V+H + G P+ VT LS
Sbjct: 362 IDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIFS-VLHAAAGGGLAPDFVTVLS 420
Query: 58 ILFACSYSGLIEEG 71
+L ACS +GL+ +G
Sbjct: 421 MLQACSNAGLLHQG 434
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A +F + +KN+V W+ MI+ + +HG +A+E F + DG +PNNVTF+++L
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEM--SFDGPRPNNVTFVAVL 327
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ET 103
AC+++GL++EG ++F M ++ L ++EH VD+L E
Sbjct: 328 SACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEP 387
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VW A+LGAC++H N +G VA+ ++P+N +Y L
Sbjct: 388 APAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVML 429
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +K VV W+ MI+ + +G +EA+E F+L+ KP++ TF+S+L AC+
Sbjct: 172 ARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGV-KPDSSTFVSLLSACA 230
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
G I G V + + + DLN+
Sbjct: 231 QVGAIGLGFWVHEYIARNC-FDLNV 254
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + ++V+ W+ +I +A +G+ RE+L FY + S KP+ +TF+ +LF
Sbjct: 119 IEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLN-FYNBMIASGVKPDFITFIGLLF 177
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+E G F M + + EHY +DLL + +
Sbjct: 178 ACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDA 237
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL ACR+H NV++GE A + F L+PKN Y L
Sbjct: 238 TVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLL 277
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 19/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F + ++ V W+ +I+ H IHG + L+ F ++ +G KP++VTF+S+L A
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML--DEGVKPDHVTFVSLLSA 630
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+SG +EEG F +M ++ + +L+HYG VDLL + +
Sbjct: 631 CSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDAS 689
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+++G+ + F +D KN YY L
Sbjct: 690 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 48/74 (64%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I+ K+V+ W+ +I +A +G EA+E + ++ C + PN T++SIL
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528
Query: 61 ACSYSGLIEEGIKV 74
A ++ G +++G+++
Sbjct: 529 AYAHVGALQQGMRI 542
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F I K+V W+ MI+++ +G EA+ FY ++ S+ +P+ TF +L AC G
Sbjct: 174 FDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GT 230
Query: 68 IEEGIKV 74
+ +G ++
Sbjct: 231 LVDGRRI 237
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 19/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F + ++ V W+ +I+ H IHG + L+ F ++ +G KP++VTF+S+L A
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML--DEGVKPDHVTFVSLLSA 630
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+SG +EEG F +M ++ + +L+HYG VDLL + +
Sbjct: 631 CSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDAS 689
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+++G+ + F +D KN YY L
Sbjct: 690 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I K+V+ W+ +I +A +G EA+E + ++ C + PN T++SIL
Sbjct: 469 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528
Query: 61 ACSYSGLIEEGIKV 74
A ++ G +++G+K+
Sbjct: 529 AYAHVGALQQGMKI 542
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F I K+V W+ MI+++ +G EA+ FY ++ S+ +P+ TF +L AC G
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GT 230
Query: 68 IEEGIKV 74
+ +G K+
Sbjct: 231 LVDGRKI 237
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A+R+F + KN W+ MI++ A HG+ +EAL F + G +PN++TF+ +L
Sbjct: 370 LASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLL 429
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC ++GL+ EG ++FD+M F L +EHY VDLLA + +
Sbjct: 430 SACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPD 489
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLGACR NV IGE V + +DP N Y
Sbjct: 490 KVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNY 527
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I +++V W+ MIA +A G REA+E F + +P+ ++ +S+L AC
Sbjct: 170 ARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACG 229
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 230 ELGDLELG 237
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH-CSDGKPNNVTFLSIL 59
+ A RIF G+ ++V+ W+ +I+ +A +G EA+ F+ + C N +T ++L
Sbjct: 269 LGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCV--TENKITLTAVL 326
Query: 60 FACSYSGLIEEGIKV 74
AC+ G ++ G ++
Sbjct: 327 SACATIGALDLGKQI 341
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 94/159 (59%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA+ +F + ++ VV W+ MI + A++G ++ALE F++++ KPN++TFL++L A
Sbjct: 410 NDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLE-MGMKPNHITFLAVLQA 468
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C++ GL+E G++ F++M + ++ ++HY VDLL E +
Sbjct: 469 CAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSG 528
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL AC++H +++G+ V++ F L+P+ Y +
Sbjct: 529 IWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEM 567
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F G+ DK V W+ MI+++A G EA+ F + + KP+ VT L+++ C
Sbjct: 310 SARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFN-AMEAAGEKPDLVTVLALISGC 368
Query: 63 SYSGLIEEG 71
+G +E G
Sbjct: 369 GQTGALELG 377
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 16/152 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KNV+ W+ MI++ A+HG + +L F + +PN VTFLS+L+AC
Sbjct: 437 ALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQ-MKDEGAEPNEVTFLSLLYACC 495
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--W 108
++GL+ EG +F MV + ++ EHYG VDLL + EP V W
Sbjct: 496 HAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIW 555
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
G+LL AC +H ++K+G AK LDP +D
Sbjct: 556 GSLLAACWMHGDLKLGAFAAKKILQLDPNHDG 587
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF G+ +K+VV WS MI+ + Q EAL F + C + + +T LS++ AC+
Sbjct: 336 ARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGI-RSDEITMLSVISACA 394
Query: 64 YSGLIEEG 71
G +++
Sbjct: 395 NLGSLDKA 402
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA ++F GI D NV+ W+ MI+++ +HG + +E F ++ S+G +P++VTF+ +L A
Sbjct: 266 DAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHML--SEGIEPSHVTFVCVLSA 323
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS++G +EEG+ F+ M ++ EHY VDLL + P
Sbjct: 324 CSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 383
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR + N+K+G A+ F ++P N Y L
Sbjct: 384 VWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLL 422
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F + ++N+V W+ MI + A+ F V+ PN V+ S+L
Sbjct: 61 MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ G + G +V ++V
Sbjct: 121 ACANMGGLNFGRQVHGVVV 139
>gi|302759747|ref|XP_002963296.1| hypothetical protein SELMODRAFT_80365 [Selaginella moellendorffii]
gi|300168564|gb|EFJ35167.1| hypothetical protein SELMODRAFT_80365 [Selaginella moellendorffii]
Length = 325
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ F GI DK+V W+ M+ ++A +G +A+E F ++ S PN+VTF ++L
Sbjct: 153 VDEAKLAFDGISDKSVFCWTAMVGAYARNGHGEKAVELFREMVESSRTLPNDVTFTTVLN 212
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
ACS++GL++EG F +M + + + EHYG +DLL E E +
Sbjct: 213 ACSHAGLVDEGKYFFALMDKVYGIAPSGEHYGCMIDLLGRAGRLEEAERMITGMPFPADK 272
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGAC++H ++ G VA+ +DP+N A Y L
Sbjct: 273 ISWETLLGACKLHGDIGRGARVAEQALRMDPENAANYVIL 312
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A F ++N + W+ M+A++A HG +AL Y + +P++VT ++L
Sbjct: 50 LEEARDAFRSRKNRNAICWTAMLAAYAQHGHNHDALR-LYKEMDLEGLRPDDVTHAAVLG 108
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + EG +V
Sbjct: 109 ACACLGALAEGRRV 122
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F +++++V W+ MI A HG+ EAL+ F++ + KPN +++++L
Sbjct: 776 IDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALD-FFVKMKSEGFKPNGYSYVAVLT 834
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
ACS++GL++EG + F M D+ ++ +EHY VDLL E E ++
Sbjct: 835 ACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDD 894
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC + N+++ E AK+ L PK+ + Y L
Sbjct: 895 APWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 934
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F ++ KN+ IW+ MI +A +G +A+ Y + G+PN +T+LSIL AC
Sbjct: 172 ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRV-YDKMRQECGQPNEITYLSILKACC 230
Query: 64 YSGLIEEGIKVFD-IMVHDFQLDLNLE 89
++ G K+ I+ FQ D+ +E
Sbjct: 231 CPVNLKWGKKIHAHIIQSGFQSDVRVE 257
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ IF ++++NV+ W+ MI A +G+ +EA F L + PN+ T++SIL
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLF-LQMQREGFIPNSYTYVSILN 328
Query: 61 ACSYSGLIE 69
A + +G +E
Sbjct: 329 ANASAGALE 337
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ ++++ W+ MI A HG+ +EA + +L + + PN T+LSIL
Sbjct: 371 IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAF-SLFLQMQRNGCLPNLTTYLSILN 429
Query: 61 ACS 63
A +
Sbjct: 430 ASA 432
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+++F ++++NV W+ MI A HG +A F ++ +G P+ T++SIL AC
Sbjct: 678 AKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLR--EGIVPDATTYVSILSAC 735
Query: 63 SYSGLIE 69
+ +G +E
Sbjct: 736 ASTGALE 742
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+DDA +F G+ D++V+ W+ M+ A +G EA F L + P++ T+LS+L
Sbjct: 474 IDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVF-LQMQQEGLVPDSTTYLSLL 531
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++RIF + +K+V W+ +IA + IHG+ +EALE F ++ KP++ TF IL ACS
Sbjct: 465 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG-LKPDDFTFTGILMACS 523
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEPYVW 108
++GL+E+G++ F+ M++ ++ LEHY VD+L G+ + +W
Sbjct: 524 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 583
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+LL +CRIH N+ +GE VA L+P+ Y
Sbjct: 584 SSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 617
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + KN+ W+ +++++ + +A+ F +I ++ KP+N T ++ AC
Sbjct: 159 DSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC 218
Query: 63 SYSGLIEEGI 72
+GL++ G+
Sbjct: 219 --AGLLDLGL 226
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 94/155 (60%), Gaps = 16/155 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + DKN V W+ +I+++ HG +E++ + + KP++VTFL+++ AC+
Sbjct: 599 ALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLH-GMQEEGYKPDHVTFLALISACA 657
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY-----VW 108
++GL+EEG+++F M + + +EH+ VDL + +G+ + P+ +W
Sbjct: 658 HAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIW 717
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
GALL ACR+H NV++ ++ +++ F LDP N YY
Sbjct: 718 GALLHACRVHRNVELADIASQELFKLDPANSGYYV 752
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILFAC 62
A+ ++ +VVI S MI+ + ++G EAL+ F YL+ C KPN VT S+L C
Sbjct: 397 AQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCI--KPNAVTIASVLPGC 454
Query: 63 SYSGLIEEGIKV 74
+ + G ++
Sbjct: 455 ASMAALPLGQQI 466
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + ++V W+GMI+ +G EA FY + S +P+++T +S+L
Sbjct: 293 LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFY-DMQRSGARPDSITLVSLLP 351
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
A + +++G +V +V +
Sbjct: 352 ALTDLNGLKQGKEVHGYIVRN 372
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D + IF + K+ V W+ MI+S + +G+ +EAL+ F + C +G K NN+T + L
Sbjct: 495 LDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQM--CMEGIKYNNITISAAL 552
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+ I G ++ + +
Sbjct: 553 SACASLPAIYYGKEIHGVTI 572
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 20/159 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSILFA 61
A R F + ++V WS +I+SHA HG R+AL F ++ D K PN +TFL +L A
Sbjct: 479 AVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMV---DAKVVPNEITFLGVLTA 535
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+ GL++EG+K ++ M ++ L ++H VDLL EP
Sbjct: 536 CSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPV 595
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH +++ G+LVA L P + A Y +L
Sbjct: 596 IWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNL 634
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS----HAIHGQE--REALEAFYLVIHCSDGKPNNVT 54
+ +A +F ++D NVV+++ MIA A G + REAL + Y + +P T
Sbjct: 268 LSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREAL-SLYSEVQSRGMEPTEFT 326
Query: 55 FLSILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
F S++ AC+ +G IE G ++ ++ H FQ D
Sbjct: 327 FSSVIRACNLAGDIEFGKQIHGQVLKHCFQGD 358
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA IF + +NVV W+ MI +A+HG+ A+ F + S KP+ VTF +L AC
Sbjct: 345 DARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFR-SMQSSKEKPDLVTFTCVLGAC 403
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S +G EEG F+ M H + +EHY V LL E + +
Sbjct: 404 SQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCI 463
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLG+CR+H NV + E+ A++ F L+P+N Y L
Sbjct: 464 WGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLL 501
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREA---LEAFYLVIHCSDG-KPNNVTFLSI 58
DA + G+ + VV WS +IA+HA HG A LE SDG +PN +T+ +
Sbjct: 73 DARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMR-----SDGVEPNVITWNGL 127
Query: 59 LFACSYSGLIEEGI 72
+ + SG + +
Sbjct: 128 VSGLNRSGRARDAV 141
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+E+ F + +K + W+ M++ +A+HGQ AL F L+ + ++V+++S+L AC
Sbjct: 686 SEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQE-THVPVDSVSYISVLSACR 744
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GLI+EG +F M L+ ++EHY VDLL TEP VW
Sbjct: 745 HAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVW 804
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGAC++H NVK+GE+ L+P+N +Y L
Sbjct: 805 GALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVL 841
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
K+ V W+ MIA + +G EA+ F + +PN VTF++IL A SY ++ E +
Sbjct: 595 KDEVSWNVMIAGYLHNGCANEAISTFN-QMKLESVRPNLVTFVTILPAVSYLSILREAM 652
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+D V W+ ++ +A G+ A E F ++ S+ PN VTF+SIL ACS SG++ EG
Sbjct: 570 VDHEVTSWNILLTGYAERGKGAHATELFQRMVE-SNVSPNEVTFISILCACSRSGMVAEG 628
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------PYVWGALLGACR 116
++ F+ M + + + NL+HY VDLL +G+ E P VWGALL +CR
Sbjct: 629 LEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCR 688
Query: 117 IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
IHH+V++GEL A++ F D + YY L
Sbjct: 689 IHHHVELGELAAENIFQDDTTSVGYYILL 717
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF ++KN+V W+ +I I+ + EAL F +I KPN+VT + +L
Sbjct: 460 IDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR--RLKPNSVTLVCVLS 517
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 518 ACARIGALTCGKEI 531
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F I +K++V+W+ MI ++ +HG R A++ F + S P+++ F+++L+
Sbjct: 671 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIA-PDHIAFVAVLY 729
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS+SGL+ EG + + M +++QL+ EHY VDLL E EP
Sbjct: 730 ACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTA 789
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW ALLGAC+IH N ++GE+ A+ +DP+N Y
Sbjct: 790 EVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNY 826
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
++ A ++F + +K +VV W+ MI++++ +GQ EAL F + S PN TF++ L
Sbjct: 267 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAAL 325
Query: 60 FACSYSGLIEEGI 72
AC S I++G+
Sbjct: 326 QACEDSSFIKQGM 338
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL-SILFACSYS 65
IF + DK+VV W+ +IA HA +G ALE F V +G +V + SIL ACS
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ--LEGIDLDVMMISSILLACSGL 533
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEH 90
LI ++ ++ DL L++
Sbjct: 534 KLISSVKEIHSYIIRKGLSDLVLQN 558
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DAE++F G+ K + W+ MI ++ +G+ +LE Y + S + TF IL AC
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLE-LYREMRVSGIPLDACTFPCILKAC 226
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D A R+F I K+VV W+ MI+ + +G EALE F+L+ + +P++++ +SI
Sbjct: 570 VDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE-TGVEPDSISLVSI 626
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A IF + D + + W+ M++ +G EAL+ FY + + KP+ V +SI+
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQ-FYHEMRDAGQKPDLVAVISIIA 427
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
A + SG G+++ + + LD +L+ VD+ A
Sbjct: 428 ASARSGNTLNGMQIHAYAMKN-GLDSDLQVGNSLVDMYA 465
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A +F + ++VV W+ +I+++ HG REA++ F + C G +P+++ F++IL
Sbjct: 343 LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM--CGQGLEPDSIAFVAIL 400
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL++ G F M +F + LEHY VDLL +
Sbjct: 401 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 460
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ IG L A L PK YY L
Sbjct: 461 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLL 501
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A +F + ++VV W+ +I+++ HG REA++ F + C G +P+++ F++IL
Sbjct: 178 LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM--CGQGLEPDSIAFVAIL 235
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL++ G F M +F + LEHY VDLL +
Sbjct: 236 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 295
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ IG L A L PK YY L
Sbjct: 296 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLL 336
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+ G+ ++VV W+ +I A +G+ EAL+ F V+ + +PN TF++++
Sbjct: 499 VEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE-VMKSEEMRPNATTFVNVMS 557
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETE------PY---- 106
AC L+EEG + F M D+ + +HY VD+LA GE E P+
Sbjct: 558 ACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSA 617
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR H NV+IGE A+ L+P+N Y SL
Sbjct: 618 AMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSL 657
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A R+F +K+VV W+ MI+ +A G +EA F L+ +G +P+ TF+SIL
Sbjct: 95 VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ--EGLEPDKFTFVSIL 152
Query: 60 FACSYSGLIEEGIKV 74
ACS + G +V
Sbjct: 153 SACSSPAALNWGREV 167
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + ++ V W+ + ++A G +E+L+ ++ ++ +P+ +T++++L AC
Sbjct: 198 DARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ-EGVRPSRITYMNVLSAC 256
Query: 63 SYSGLIEEGIKV 74
+E+G ++
Sbjct: 257 GSLAALEKGKQI 268
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI-HCSDGKPNNVTFLSIL 59
+ DA +F + +++V+ W+ MI GQ EA F+ ++ C P+ VT+L+IL
Sbjct: 297 VKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECV--APDRVTYLAIL 354
Query: 60 FACSYSGLIEEGIKVFDIMVHD 81
AC+ G + G ++ V D
Sbjct: 355 SACARPGGLACGKEIHARAVKD 376
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F GI +K VV W+ MIA +A HG +EAL F + + P++VT + +L
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE-SMKKTGILPDDVTMVGVLS 503
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G + F M D+ + N +HY +DLL E +
Sbjct: 504 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 563
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE AK F ++P N Y L
Sbjct: 564 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLL 603
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ +A +F + ++VV W+ +I+++ HG REA++ F + C G +P+++ F++IL
Sbjct: 233 LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM--CGQGLEPDSIAFVAIL 290
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL++ G F M +F + LEHY VDLL +
Sbjct: 291 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 350
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ IG L A L PK YY L
Sbjct: 351 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLL 391
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 25/163 (15%)
Query: 3 DAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLV----IHCSDGKPNNVTFLS 57
DA +F I + K+V+ W+ MI +A HG EALE F L+ IH P +TF+S
Sbjct: 457 DACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIH-----PTYITFIS 511
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY- 106
+L AC+++GL+EEG + F M++D+ ++ +EH+ VD+L T P+
Sbjct: 512 VLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFK 571
Query: 107 ----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H+NV++ + A L+P++ A Y L
Sbjct: 572 PDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLL 614
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 16/149 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F G+ ++NV +S MI A+HG+ +A++ F ++ ++ KPN VTF+ +L AC
Sbjct: 334 DAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVK-TEIKPNRVTFIGVLTAC 392
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY--V 107
S++G++E+G ++F++M + + + +HY VDLL T EP+ V
Sbjct: 393 SHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGV 452
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDP 136
WGALLGACRIH + I + A F L+P
Sbjct: 453 WGALLGACRIHKSPDIAAIAANHLFELEP 481
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+D A R F + +VV WS +I+ HA HG R+AL F ++ D K PN +TFL +
Sbjct: 471 VDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMV---DAKVVPNEITFLGV 527
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L ACS+ GL++EG++ ++ M D+ L ++H VDLL
Sbjct: 528 LTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHA 587
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+P +W +LL +CRIH +++ G+LVA L+P + A Y L
Sbjct: 588 DPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVIL 629
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIA----SHAIHGQE--REALEAFYLVIHCSDGKPNNVTFL 56
+A +F + + NVV+++ MIA + + G+E EAL Y + +P TF
Sbjct: 265 EAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL-TLYSEVQSRGMQPTEFTFS 323
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
S+L AC+ +G +E G ++ ++ + FQ D
Sbjct: 324 SVLRACNLAGYLEFGKQIHGQVIKYTFQED 353
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA +F I K+VV W+ MI+ +A HG ++AL F + +G KP+ +TF+++L
Sbjct: 314 LKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMK--KEGLKPDWITFVAVL 371
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL++ G++ F+ M DF ++ EHY VDLL +
Sbjct: 372 LACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPH 431
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P ++G LLGACRIH N+ + E AK+ LDP Y L
Sbjct: 432 PAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQL 472
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AER+F + + +V W+ MIA + +G+ + L F ++ + KPN ++ S+L CS
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLE-TGVKPNALSLTSVLLGCS 274
Query: 64 YSGLIEEGIKVFDIM 78
++ G +V ++
Sbjct: 275 NLSALQLGKQVHQLV 289
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY 40
M +A R+F + +KN V WS M++ + G A+E FY
Sbjct: 151 MGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFY 190
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D R+F G+ K++ W+ M+ +AI+G R A++ F + C +P++VTF+++L
Sbjct: 182 VDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGI-RPDDVTFIALLS 240
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS++GL E+G K+F M DF + +LEHY VD+L +T
Sbjct: 241 GCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSG 300
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR+H+ V + E +A F L+P N Y L
Sbjct: 301 SIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVML 340
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F I +KNV WS MI +HG EAL FY + + PN+VTF+S+L ACS
Sbjct: 370 AYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFY-EMRSVNQLPNSVTFVSVLSACS 428
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+SG IEEG F M D+ + EHY VDLL TEP W
Sbjct: 429 HSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAW 488
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACRIH ++ E VAK L+ Y L
Sbjct: 489 GALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVML 525
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I ++VV+WS +IA A +G+ E++ F ++ PN+VTF SI+
Sbjct: 266 LDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQML-ADSVTPNSVTFASIVL 324
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
ACS G +++G V M+ + ++L++++Y +D+ A
Sbjct: 325 ACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYA 362
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + ++ S MI +AI+G +E+LE F + + KP+ VTF+ +L
Sbjct: 439 IEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQ-MQFTGLKPDRVTFVGVLS 497
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL++EG + FDIM + + +EHYG +DLL + +
Sbjct: 498 ACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDA 557
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR H+N+ +GE VA+ L+P+N A Y L
Sbjct: 558 DMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLL 597
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + + NVV W+ MIA ++ +GQ AL+ F + D KPN TF +L
Sbjct: 338 VEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQ-MQMVDMKPNTETFAIVLP 396
Query: 61 ACSYSGLIEEGIKVFDIMVHD-FQLDL 86
AC+ ++E+G + ++++ FQ D+
Sbjct: 397 ACAALAVLEQGNEAHEVVIRSGFQSDV 423
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + KNVV W+ MIA++A H +EAL FY + +PN+ TF SIL AC
Sbjct: 118 EARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGI-QPNHFTFASILPAC 176
Query: 63 S 63
+
Sbjct: 177 T 177
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + ++N+V W+ MIA + +G +EA + F ++ + N +++ +++
Sbjct: 276 VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIM-----PERNVISWNAVIS 330
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ +G +EE +K+F M
Sbjct: 331 GFAQNGQVEEALKLFKTM 348
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F I ++V+ W+ M+A +A G A+E F + + N V++ +++
Sbjct: 245 IEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKM-----PEQNLVSWNTMIA 299
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G ++E K+F IM
Sbjct: 300 GYVQNGSVKEAFKLFQIM 317
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F II +VV W+ +I+ +A+HG+ +ALE F ++ SD KPN+VTF+++L
Sbjct: 504 IRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNR-MNKSDTKPNDVTFVALLS 562
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
C +GL+ +G+ +F+ M D ++ +++HY V LL P
Sbjct: 563 VCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSP 622
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL +C +H NV +G+ A+ ++P+++ Y L
Sbjct: 623 MVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLL 662
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 23/111 (20%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA-- 61
A +F GII K+ V W+ M++ ++ + +AL F + + KPN S+L A
Sbjct: 204 ARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFS-KMRMAGAKPNPFVLTSVLKAAV 262
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALL 112
C S ++ +GI +G V L +TEP+V GALL
Sbjct: 263 CLSSAVLGKGI------------------HGCAVKTLC--DTEPHVGGALL 293
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F I +V++WS +I+ +A Q +A E F ++ S PN + +L
Sbjct: 302 IEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMR-SSVVPNEFSLSGVLQ 360
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ ++ G ++ ++++
Sbjct: 361 ACANVAFLDLGQQIHNLVI 379
>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 558
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F + ++++ +S MIA+ A HG+ ++A++ F L + KPN VTF+ +L
Sbjct: 361 IDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLF-LKMQQEGLKPNQVTFVGVLN 419
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS SGLIEEG + F IM + ++ EHY VDLL + +
Sbjct: 420 ACSTSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADA 479
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL ACR++ NV++GE+ A+ F +DP + Y L
Sbjct: 480 TTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLL 519
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F GI+D++VV W+ MI +A G+ +A F + G+ N+ T+ +++
Sbjct: 168 DARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNM-----GERNSFTWTTMVAGY 222
Query: 63 SYSGLIEEGIKVFDIM 78
+ G ++ ++++D+M
Sbjct: 223 ANYGDMKAAMELYDVM 238
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F + ++N W+ M+A +A +G + A+E + ++ +GK + VT+++++
Sbjct: 197 MVDARFLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVM----NGK-DEVTWVAMIA 251
Query: 61 ACSYSGLIEEGIKVFD 76
G + E ++FD
Sbjct: 252 GYGKLGNVSEARRIFD 267
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN V W+ +IA++ HG+ RE L+ F+ ++ + +P++VTFL I+ AC
Sbjct: 635 ARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVE-AGIQPDHVTFLVIMSACG 693
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPYV-----W 108
++GL++EGI F M ++ + +EH+ VDL T ++ P+ W
Sbjct: 694 HAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTW 753
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLGACR+H NV++ +L +K LDP N YY L
Sbjct: 754 GSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLL 790
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA+ +F + ++ ++W+ M+ + +G AL F + + S KPN+V+F+ +L C
Sbjct: 230 DAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRN-SCVKPNSVSFVCLLSVC 288
Query: 63 SYSGLIEEGIKVFDIMVHD-FQLDLNLEHYGITV 95
+ G++ GI++ +++ F+ D + + IT+
Sbjct: 289 ATRGIVRAGIQLHGLVIRSGFESDPTVANTIITM 322
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + KN V W+ MI+ + +HG +ALE F + KP+++TF+S+L
Sbjct: 247 LDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFR-EMKAERVKPDHITFVSLLS 305
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS+SGL+ + F++M ++ + +L+HYG VDL GE E
Sbjct: 306 ACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDA 365
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACRIH N+++G+ ++ F +D +N YY L
Sbjct: 366 SAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLL 405
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++FG +I K+VV W+ +I +A +G EA+E + L+ + PN T++SIL A S
Sbjct: 149 AQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207
Query: 64 YSGLIEEGIKV 74
+ G +++G+++
Sbjct: 208 HVGALQQGMRI 218
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + +NV W+ +I +A+HGQ ++ALE F + + PN VTF+ +L
Sbjct: 413 MDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMRE-AGVPPNQVTFVGVLS 471
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + G+I EG FD+M + + L HYG VDLL+ +
Sbjct: 472 ACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANS 531
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG L+G C H NV+IGE K L+P ND Y L
Sbjct: 532 IIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVL 571
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA F ++ KN+V W+ MI +A +G +A++ F ++ ++ +P+ VTF+++L
Sbjct: 568 MDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYML-TTEQRPDGVTFIAVLT 626
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS+SGL++E I F+ M + + EHY +D L + +P
Sbjct: 627 GCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDP 686
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC +HHN ++GE AK F LDPKN + Y L
Sbjct: 687 IVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLL 726
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +++VV W+ MI+ AIH EA + F+ + + P ++ S++ +C+
Sbjct: 470 ARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFD-FFKQMRGNGMMPTESSYASMINSCA 528
Query: 64 YSGLIEEGIKVFDIMVHD 81
+ +G ++ +V D
Sbjct: 529 RLSSVPQGRQIHAQIVKD 546
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A + + D+NVV W+ +IA+ A + EALE + ++ +G P + T S+L
Sbjct: 90 LDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLR--EGLVPTHFTLASVL 147
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC +++G + + V LD NL
Sbjct: 148 SACGAVAALDDGRRCHGLAVK-VGLDENL 175
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ AE +F I +VV W+ +IA++A++G REAL+ F+ + P+ VTF+ IL
Sbjct: 267 ISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFH-KMEVEGVAPDEVTFVGILS 325
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY------------- 106
ACS+ GLI++G+K+F MV + ++ EHY VDLL G E
Sbjct: 326 ACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANA 385
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+++ + A+ +P + Y L
Sbjct: 386 GIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLL 425
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + +NV W+ +I +A+HGQ ++ALE F + + PN VTF+ +L
Sbjct: 418 MDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMRE-AGVPPNQVTFVGVLS 476
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + G+I EG FD+M + + L HYG VDLL+ +
Sbjct: 477 ACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANS 536
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG L+G C H NV+IGE K L+P ND Y L
Sbjct: 537 IIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVL 576
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D A +IF I +K ++++WS +IA + +HG A+ F ++H S +PN +TF S+
Sbjct: 538 LDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVH-SGMQPNEITFTSV 596
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-- 106
L ACS+ GL+++G+ +F M+ ++ HY VDLL ++ P+
Sbjct: 597 LHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQ 656
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC IH NV++GE+ A+ F L+P++ Y L
Sbjct: 657 NHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILL 698
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +F +K+V+ W+ MI + ++G + AL A + PN VT S+L
Sbjct: 336 MDEASLVFAETKEKDVITWTSMINGYIMNGNAKSAL-ALCPAMQLDGVVPNAVTLASLLS 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPY 106
AC+ +++G K V +LD ++ +D+ A Y
Sbjct: 395 ACASLCCLKQG-KSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSY 439
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F ++ ++VV W+ MI+ +G+ EAL F ++ + +P++ T +S L +C
Sbjct: 238 ARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMD-ARVEPDSATIVSALPSCG 296
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
+ +E GIKV +V L +E VD+
Sbjct: 297 HLKELELGIKVHK-LVQKNHLQEKIEVRNALVDM 329
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 1 MDDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D A +IF I +K++++WS +IA + +HG A+ F ++H S +PN +TF S+
Sbjct: 510 LDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVH-SGMQPNEITFTSV 568
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-- 106
L ACS+ GL+++G+ +F M+ ++ HY VDLL ++ P+
Sbjct: 569 LHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQ 628
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC IH NV++GE+ A+ F L+P++ Y L
Sbjct: 629 NHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILL 670
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F ++ ++VV W+ MI+ +G+ EAL F ++ + +P++ T +S L +C
Sbjct: 238 ARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMD-ARVEPDSATIVSALPSCG 296
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
Y +E GIKV +V L +E VD+
Sbjct: 297 YLKELELGIKVHK-LVQKNHLQEKIEVRNALVDM 329
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F +K+V+ W+ MI + ++G + AL A + PN VT S+L
Sbjct: 336 IDEASLVFAETKEKDVITWTSMINGYIMNGNAKSAL-ALCPAMQLDGVVPNAVTLASLLS 394
Query: 61 ACS 63
AC+
Sbjct: 395 ACA 397
>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Glycine max]
Length = 503
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSIL 59
+ +AE +F ++ + V W+ MI+S A HG+E+ AL+ F + +H KPN++TF ++L
Sbjct: 308 LSNAENVFRVMVVREVCTWNAMISSLASHGREKNALDMFDRMKLH--GLKPNSITFAAVL 365
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+ L+ EG+ +F M +DF ++ NL+HYG +DLL + +
Sbjct: 366 TACARGNLVREGLDLFRSMWYDFGIEPNLKHYGCVIDLLGRAGHIEEAAEIIRNMPFQPD 425
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V GA LGACRIH +++GE + K+ L ++ Y L
Sbjct: 426 ASVLGAFLGACRIHGAIELGEEIGKNMLRLQTQHSGQYVLL 466
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 16/155 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++RIF + +K+V W+ +IA + IHG+ +EALE F ++ KP++ TF IL ACS
Sbjct: 563 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGL-KPDDFTFTGILMACS 621
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEPYVW 108
++GL+E+G++ F+ M++ ++ LEHY VD+L G+ + +W
Sbjct: 622 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 681
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+LL +CRIH N+ +GE VA L+P+ Y
Sbjct: 682 SSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYV 716
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + KN+ W+ +++++ + +A+ F +I ++ KP+N T ++ AC
Sbjct: 52 DSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC 111
Query: 63 SYSGLIEEGI 72
+GL++ G+
Sbjct: 112 --AGLLDLGL 119
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 96/160 (60%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+++F + K + I++ MI+++A+HGQ EAL A + + +P+++TF SIL
Sbjct: 1701 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEAL-ALFKHLQKEGIEPDSITFTSILS 1759
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS++GL+ EG+ +F MV ++ +EHYG V LL+ T +P
Sbjct: 1760 ACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDA 1819
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++ G+LL ACR HH +++GE ++K F L+P N Y +L
Sbjct: 1820 HILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVAL 1859
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F +++KNVV W+ MI + +G +EA++ FY + +P VT S L
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFY-DMRVEGIEPTRVTVASFLS 1386
Query: 61 ACSYSGLIEEG 71
A + + EG
Sbjct: 1387 ASANLDALIEG 1397
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F ++++V+W+ ++A++A G EAL+ FY + PN +++ S++
Sbjct: 1530 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFY-QMQFDSVPPNVISWNSVIL 1588
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G + E +F M
Sbjct: 1589 GFLRNGQVNEAKDMFSQM 1606
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE +F +++K+VV W+ +I+S+ H Q +AL +L + + + ++VT SIL
Sbjct: 1429 IEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHL-MRSENLRFDSVTLSSILS 1487
Query: 61 ACSYSGLIEEG 71
A + + I+ G
Sbjct: 1488 ASAVTSNIKLG 1498
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F I +KNV WS MI +HG EAL FY + + PN+VTF+S+L ACS
Sbjct: 306 AYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFY-EMRSVNQLPNSVTFVSVLSACS 364
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+SG IEEG F M D+ + EHY VDLL TEP W
Sbjct: 365 HSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAW 424
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACRIH ++ E VAK L+ Y L
Sbjct: 425 GALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVML 461
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F I +BVV+WS +IA A +G+ E++ F ++ PN+VTF SI+
Sbjct: 202 LDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQML-ADSVTPNSVTFASIVL 260
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
ACS G +++G V M+ + ++L++++Y +D+ A
Sbjct: 261 ACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYA 298
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+A ++F + ++NV +S MI +A+HG+ AL+ F+ ++ ++ +PN VTF+ IL A
Sbjct: 329 DEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLK-TEIRPNKVTFIGILSA 387
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY-- 106
CS++GL+E+G ++F M F + + +HY VDLL T EP
Sbjct: 388 CSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG 447
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N I ++ A + F L+P Y L
Sbjct: 448 VWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILL 486
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K++V W+ M+ +A +G+ +EALE ++ + + + VT ++
Sbjct: 225 MESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALE-YFQKMQDVGMETDEVTLAGVIS 283
Query: 61 ACSYSGLIEEGIKVFDI 77
AC+ G ++ + DI
Sbjct: 284 ACAQLGAVKHANWIRDI 300
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
++D+ + F + +VV+WS MIA++ HG+ EALE F+ D K N VTFLS+
Sbjct: 346 LEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFH---QMEDLKMEANEVTFLSL 402
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L+ACS+SGL E+G + FD+MV ++L +EHY VDLL +
Sbjct: 403 LYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQP 462
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ +W LL AC++H ++ E ++++ LDP + A Y L
Sbjct: 463 DGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLL 504
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E++ + + VV W+ +IA A +G E L Y ++ + +P+ +TF+S+L
Sbjct: 245 LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQ-YNMMKMAGFRPDKITFVSVLS 303
Query: 61 ACSYSGLIEEGIKV 74
ACS + +G ++
Sbjct: 304 ACSELATLGQGQQI 317
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+A ++F + ++NV +S MI +A+HG+ AL+ F+ ++ ++ +PN VTF+ IL A
Sbjct: 329 DEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLK-TEIRPNKVTFIGILSA 387
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY-- 106
CS++GL+E+G ++F M F + + +HY VDLL T EP
Sbjct: 388 CSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG 447
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N I ++ A + F L+P Y L
Sbjct: 448 VWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILL 486
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K++V W+ M+ +A +G+ +EALE ++ + + + VT ++
Sbjct: 225 MESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALE-YFQKMQDVGMETDEVTLAGVIS 283
Query: 61 ACSYSGLIEEGIKVFDI 77
AC+ G ++ + DI
Sbjct: 284 ACAQLGAVKHANWIRDI 300
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ K+++ W+ +I A+H + +AL F+ + + KP+ +TF+ IL
Sbjct: 382 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQ-KPDGITFIGILC 440
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+E+G F M D+ + +EHYG VD+LA E +
Sbjct: 441 ACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADG 500
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRI+ NV++ EL + L+PKN A Y L
Sbjct: 501 VIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 540
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
E +F + ++N+ W+ +I +A +G E L +F ++ SD PN+ T +++L AC+
Sbjct: 284 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 343
Query: 65 SGLIEEG 71
G ++ G
Sbjct: 344 LGALDLG 350
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A ++F I D N+ +W+ M +A RE + F+ + D +PN TF +L
Sbjct: 86 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF-QMKGMDIRPNCFTFPVVLK 144
Query: 61 ACSYSGLIEEGIKV 74
+C + EG +V
Sbjct: 145 SCGKINALIEGEQV 158
>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial [Vitis vinifera]
Length = 828
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +IF +++V W+ MI++ H +A+E F+ + C +P TF+S+L
Sbjct: 631 LDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGT-RPTKSTFISLLS 689
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG+ + M+ F ++ + EH+ VD+L + EP
Sbjct: 690 ACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEP 749
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC H ++K+G VA+ F L+P+N YY SL
Sbjct: 750 GVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISL 789
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A IFG ++N+ W+ MI++ + + R ALE F + + +PN +T + IL
Sbjct: 533 IENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHI----EFEPNEITIVGILS 588
Query: 61 ACSYSGLIEEGIKV 74
AC+ G++ G ++
Sbjct: 589 ACTQLGVLRHGKQI 602
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +F I ++++V W+ MI+ ++ +G REA F ++ S + + T L+IL +C
Sbjct: 332 AEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQ-SYSQCSLSTLLAILPSCD 390
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
S ++ F +H +QL L + + V+ L
Sbjct: 391 SSEFLQ-----FGESIHCWQLKLGFANNPLAVNSL 420
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+++A+++F I K N+ W+ MI A+HG+ +AL+ Y + +P++VTF+ +L
Sbjct: 266 IEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQ-LYDQMLIRKMRPDDVTFVGLL 324
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY----------- 106
AC++ G++ EG ++F+ M FQ+ LEHYG VDLL GE E Y
Sbjct: 325 LACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPD 384
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LLGAC H NV++GE+ A+ F L+P N Y L
Sbjct: 385 SVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVIL 425
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + +NV+ W+ +I+ +A +G+ +ALE F + + KPN V+ S+L
Sbjct: 164 MEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLP 223
Query: 61 ACSYSGLIEEGIKV 74
ACS G ++ G ++
Sbjct: 224 ACSQLGALDIGKRI 237
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + DK++ +W+ MI S+AIHG EA+ F+ + P+ + + S+ ACS
Sbjct: 407 AREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACS 466
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEPYVW 108
+SGL+EEG+K F M DF + +EH +DLL + + VW
Sbjct: 467 HSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVW 526
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LL ACRIH NV++GEL P + Y
Sbjct: 527 GPLLSACRIHGNVELGELATVRLLDSSPGSSGSY 560
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A RIF II+K+++ W+ MIA + G EAL+ F +I +D +PN T +++
Sbjct: 303 LTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIR-TDIRPNGATLATVVS 361
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 362 ACADLGSLSIGQEI 375
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A ++F + +K+++ W+ MI + G EA FY + H S G + V FL+++
Sbjct: 202 MDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVG-IDFVVFLNLIS 260
Query: 61 AC 62
C
Sbjct: 261 GC 262
>gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +IF +++V W+ MI++ H +A+E F+ + C +P TF+S+L
Sbjct: 650 LDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGT-RPTKSTFISLLS 708
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG+ + M+ F ++ + EH+ VD+L + EP
Sbjct: 709 ACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEP 768
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC H ++K+G VA+ F L+P+N YY SL
Sbjct: 769 GVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISL 808
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A IFG ++N+ W+ MI++ + + R ALE F + + +PN +T + IL
Sbjct: 552 IENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHI----EFEPNEITIVGILS 607
Query: 61 ACSYSGLIEEGIKV 74
AC+ G++ G ++
Sbjct: 608 ACTQLGVLRHGKQI 621
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + K++ W+ MI S A+HG EAL F + DG +PN VTF+ +L AC
Sbjct: 336 AWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIAC 395
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S+ GL++EG K F+ MV+++++ +++HYG VDLL+ +T P+ +
Sbjct: 396 SHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVL 455
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+HH+V + E + ++P D Y L
Sbjct: 456 WRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLL 493
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + +++ V W+ MIA + AL A + + ++ + ++T +S+L
Sbjct: 232 IEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARAL-ALFREMEIANVEATDITLISVLG 290
Query: 61 ACSYSGLIEEGIKV 74
AC+ +G +E G K+
Sbjct: 291 ACAETGALEIGRKI 304
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 18/158 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILF 60
D A ++F + ++NVV W+ MI +HA+HGQ E L F L C P+ +TFL +L
Sbjct: 428 DAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCI--VPDEITFLGLLS 485
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL------------ATG---ETEP 105
ACS+SGL+ EG + F M + ++ EHY +DLL A G ET+
Sbjct: 486 ACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDE 545
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
WGALL ACR++ NV+IGE A L+P + Y
Sbjct: 546 AGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYV 583
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + +N V WS MIA+++ Q EA+ F +I +P N +S+L
Sbjct: 325 LESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIE-EGVEPINAGLVSVLS 383
Query: 61 ACSYSGLIEEGIKVFD 76
AC+ G ++ G ++D
Sbjct: 384 ACAQLGCLDLGRWIYD 399
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + D++VV W+ ++ +A G EA F ++ +PN VT ++++ A
Sbjct: 195 ARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMG 254
Query: 64 YSGLIEEGIKVF 75
GL+ G V+
Sbjct: 255 QMGLLAFGRMVY 266
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F I V W+ +IAS IHG+ EAL+ F ++ K +++TF+S+L
Sbjct: 477 LEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDML-AERVKADHITFVSLLS 535
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++EG K FDIM ++ + +L+HYG VDLL + +
Sbjct: 536 ACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDA 595
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC+I+ N ++G L + +D +N YY L
Sbjct: 596 SIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLL 635
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K+ + W+ ++ + +G EA++A+ ++ C D PN T++SI+
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434
Query: 61 ACSYSGLIEEGIKV 74
A S+ G +++G+K+
Sbjct: 435 AYSHVGALQQGMKI 448
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F G+ +KNV WS I A++G + LE F L+ S +PN +TF+S+L
Sbjct: 294 MNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSV-QPNEITFVSVLR 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-------------LATGETEPYV 107
CS GL+EEG K F+ M + ++ LEHYG VDL + + P+V
Sbjct: 353 GCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHV 412
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC+I+ N+++GEL ++ L+ KN Y L
Sbjct: 413 GAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLL 452
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+ + W+ MI+ + GQ REAL F L+ K N V+ +S+L ACS
Sbjct: 196 ARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQR-EGVKVNEVSMVSVLSACS 254
Query: 64 YSGLIEEG 71
+ G +++G
Sbjct: 255 HLGALDQG 262
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F GI +K VV W+ MIA +A HG +EAL F + + P++VT + +L
Sbjct: 364 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE-SMKKTGILPDDVTMVGVLS 422
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G + F M D+ + N +HY +DLL E +
Sbjct: 423 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 482
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE AK F ++P N Y L
Sbjct: 483 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLL 522
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 92/156 (58%), Gaps = 20/156 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSILFA 61
A R+F + +KN V W+ +IAS+ +G +E++ L+ H + K ++VTFL+++ A
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVS---LLRHMQEEGFKADHVTFLALVSA 660
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C+++G ++EG+++F M ++Q+ +EH+ VDL + + +
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL ACR+H NV++ E+ +++ F LDP N YY
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYY 756
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D + IF I K+ V W+ MI+S A +G+ EAL F + C +G K +NVT S+L
Sbjct: 500 LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM--CMEGVKYSNVTISSVL 557
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+ I G ++ +++
Sbjct: 558 SACASLPAIYYGKEIHGVVI 577
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ K+++ W+ +I A+H + +AL F+ + + KP+ +TF+ IL
Sbjct: 445 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQ-KPDGITFIGILC 503
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+E+G F M D+ + +EHYG VD+LA E +
Sbjct: 504 ACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADG 563
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRI+ NV++ EL + L+PKN A Y L
Sbjct: 564 VIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 603
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
E +F + ++N+ W+ +I +A +G E L +F ++ SD PN+ T +++L AC+
Sbjct: 347 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 406
Query: 65 SGLIEEG 71
G ++ G
Sbjct: 407 LGALDLG 413
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A ++F I D N+ +W+ M +A RE + F+ + D +PN TF +L
Sbjct: 149 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF-QMKGMDIRPNCFTFPVVLK 207
Query: 61 ACSYSGLIEEGIKV 74
+C + EG +V
Sbjct: 208 SCGKINALIEGEQV 221
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 92/156 (58%), Gaps = 20/156 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSILFA 61
A R+F + +KN V W+ +IAS+ +G +E++ L+ H + K ++VTFL+++ A
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVS---LLRHMQEEGFKADHVTFLALVSA 660
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C+++G ++EG+++F M ++Q+ +EH+ VDL + + +
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL ACR+H NV++ E+ +++ F LDP N YY
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYY 756
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D + IF I K+ V W+ MI+S A +G+ EAL F + C +G K +NVT S+L
Sbjct: 500 LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM--CMEGVKYSNVTISSVL 557
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+ I G ++ +++
Sbjct: 558 SACASLPAIYYGKEIHGVVI 577
>gi|357151824|ref|XP_003575916.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 677
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 18/155 (11%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
FGGI++K+V+ W+ M+ +A +G E +E F L+ S+ KPN+ TFL++L AC +GL
Sbjct: 487 FGGIVNKDVISWTSMMQVYAWNGHAAEVVELFELMKK-SEVKPNSYTFLAVLSACKNTGL 545
Query: 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY---------------VWGA 110
+EEG+ + M H + L+LN+EH VDLL TG T+ Y +WG
Sbjct: 546 VEEGMDLLKCMEHQYGLELNVEHISCVVDLLCRTGRLTDAYDLIKNTVSEHVNKIILWGI 605
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL A R ++ IGE A+ LDP+N A Y L
Sbjct: 606 LLSASRSCGDLVIGEAAARHLLSLDPENRANYKML 640
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + KN V W+ +IA++ HG RE L+ ++ ++ + P++VTFL I+ AC ++G
Sbjct: 573 VFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLR-AGIHPDHVTFLVIISACGHAG 631
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY-----VWGAL 111
L++EGI F M ++ + +EHY VDL T ++ P+ VWG L
Sbjct: 632 LVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTL 691
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGACR+H NV++ +L ++ LDPKN YY L
Sbjct: 692 LGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 725
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + + V W+G+IA + +G EA F +I + KP++VTF S L +
Sbjct: 267 ARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS-AGVKPDSVTFASFLPSIL 325
Query: 64 YSGLIEEGIKVFDIMV-HDFQLDLNLE 89
SG + +V +V H D+ L+
Sbjct: 326 ESGSLRHCKEVHSYIVRHRVPFDVYLK 352
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ K+++ W+ +I A+H + +AL F+ + + KP+ +TF+ IL
Sbjct: 224 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQ-KPDGITFIGILC 282
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+E+G F M D+ + +EHYG VD+LA E +
Sbjct: 283 ACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADG 342
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRI+ NV++ EL + L+PKN A Y L
Sbjct: 343 VIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 382
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
E +F + ++N+ W+ +I +A +G E L +F ++ SD PN+ T +++L AC+
Sbjct: 126 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 185
Query: 65 SGLIEEG 71
G ++ G
Sbjct: 186 LGALDLG 192
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +N V W+ M++ + +HG+ +EAL+ F + + P++++FL +L+
Sbjct: 565 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD-KMQKAGFVPDDISFLVLLY 623
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++++G+ FDIM D+ + + EHY +DLLA E
Sbjct: 624 ACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSA 683
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+W ALL ACR+H NV++ E ++ +ND YT
Sbjct: 684 VIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYT 721
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEE 70
I +V+ WS +IA +A G +EAL+AF +I DG +PN+VT +S+L AC+ G + +
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMIL--DGSEPNSVTIISLLSACASLGALSQ 413
Query: 71 GIKV 74
G+++
Sbjct: 414 GMEI 417
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI +A +G +AL+ F +I PN T IL
Sbjct: 461 ARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILM 520
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
AC++ + G ++ + H+ E EP V+ + C I
Sbjct: 521 ACAHLAALRMGKQIHAYVT---------RHH----------EYEPSVY--FVANCLIDMY 559
Query: 121 VKIGEL-VAKDPFHLDPK-NDAYYTSL 145
K G++ A++ F PK N+ +TS+
Sbjct: 560 SKCGDVDTARNVFDSMPKRNEVSWTSM 586
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + ++V WS MI+S+A HG +EA++ F L + S PN++TFL +L
Sbjct: 402 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL-MKGSGIAPNHITFLGVLV 460
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG++ F+IM D + N++H VDLL E +P
Sbjct: 461 ACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDP 520
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACR+H G+ VA+ L+P+ A Y L
Sbjct: 521 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLL 560
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS--HAIHGQEREALEAFYLV--IHCSDGKPNNVTFL 56
++DA +IF + D NVV+++ MIA + A EA YL + KP+ TF
Sbjct: 195 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFS 254
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
SIL ACS E G ++ I ++ Q D
Sbjct: 255 SILKACSTIEAFECGKQIHAQIFKYNLQSD 284
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF I +KN+V W+ MI + HG+ +A+E F + S KP++VTFLS+L +C+
Sbjct: 598 AQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFD-EMRSSGIKPDDVTFLSLLSSCN 656
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SGLIEEG+ +F++M F ++ +EHY VDL E + +W
Sbjct: 657 HSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIW 716
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL +C+IH N+++GE+VA +++P + Y L
Sbjct: 717 LSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQL 753
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++F + DK + +W+ +I+++ +G +AL + + C+ ++ T L++L
Sbjct: 292 IESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCT-VLSDSFTILNVLT 350
Query: 61 ACSYSGLIEEG 71
+ S +GL + G
Sbjct: 351 SSSMAGLYDLG 361
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F I V W+ +IAS IHG+ EAL+ F ++ K +++TF+S+L
Sbjct: 477 LEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDML-AERVKADHITFVSLLS 535
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++EG K FDIM ++ + +L+HYG VDLL + +
Sbjct: 536 ACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDA 595
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC+I+ N ++G L + +D +N YY L
Sbjct: 596 SIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLL 635
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K+ + W+ ++ + +G EA++A+ ++ C D PN T++SI+
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434
Query: 61 ACSYSGLIEEGIKV 74
A S+ G +++G+K+
Sbjct: 435 AYSHVGALQQGMKI 448
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + D NV+ W+ MI+ A HG ALE F+ +I + KPN+VT++++L AC
Sbjct: 509 DACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMI-AAGVKPNDVTYIAVLSAC 567
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL++EG + F +M L +EHY VDLL + + V
Sbjct: 568 SHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALV 627
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGAC+ H+N+ IGE+ A L+P++ A Y L
Sbjct: 628 WKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLL 665
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
R+F G+ ++ VV+W+ +I +A G EA+E F ++ + +P+ T S+L AC+
Sbjct: 209 RRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLE-NGFQPDQYTLSSMLSACTE 267
Query: 65 SGLIEEGIKVFDIMVHDFQLDLNLE 89
G G + +H L L LE
Sbjct: 268 LGSFRLGQQ-----LHSLALRLGLE 287
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F + NV+ W+ +++ + G + + + + +PN++T+ S+L AC
Sbjct: 311 NAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKAC 370
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNL 88
+ G + G ++ V DLN+
Sbjct: 371 ANLGDQDSGRQIHTHCVKSNLADLNV 396
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + ++V WS MI+S+A HG +EA++ F L + S PN++TFL +L
Sbjct: 481 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL-MKGSGIAPNHITFLGVLV 539
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG++ F+IM D + N++H VDLL E +P
Sbjct: 540 ACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDP 599
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACR+H G+ VA+ L+P+ A Y L
Sbjct: 600 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLL 639
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS--HAIHGQEREALEAFYLV--IHCSDGKPNNVTFL 56
++DA +IF + D NVV+++ MIA + A EA YL + KP+ TF
Sbjct: 274 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFS 333
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
SIL ACS E G ++ I ++ Q D
Sbjct: 334 SILKACSTIEAFECGKQIHAQIFKYNLQSD 363
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +NVV W+ MI+ A++G+ ++ F +I PN TFL +L
Sbjct: 808 LEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLGVLA 867
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CSY+G +E G ++F +M+ F+L+ EHYG VDL++
Sbjct: 868 CCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANA 927
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR H +VK+ EL A + ++P N Y L
Sbjct: 928 AMWGSLLSACRSHGDVKLAELAAMELVKIEPGNSGNYVLL 967
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 18/145 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I DK+VV W+ MI +A+HG +EAL+ F + C G P N+TF+ IL
Sbjct: 307 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM--CRMGLHPTNITFIGIL 364
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC +SG + EG +F+ M ++ ++ +EHYG V+LL E +
Sbjct: 365 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 424
Query: 105 PYVWGALLGACRIHHNVKIGELVAK 129
P +WG LLGACR+H + +GE + +
Sbjct: 425 PVLWGTLLGACRLHGKIALGEKIVE 449
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ +++ V W+ MI + +G EAL F ++ + KPN VT LS+L
Sbjct: 206 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLS 264
Query: 61 ACSYSGLIEEG 71
AC G +E G
Sbjct: 265 ACGQLGALESG 275
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +FG + +V W+ +I HA+ G +AL FY + +PN TF SIL
Sbjct: 78 LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN-FYAQMLTQGVEPNAFTFSSILK 136
Query: 61 AC 62
C
Sbjct: 137 LC 138
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + + N V + MIA +A HG E E+L F L++ D PN++TF+++L AC
Sbjct: 400 DARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLE-KDIAPNSITFIAVLSAC 458
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
++G +EEG K F++M F ++ EHY +DLL ET P+
Sbjct: 459 VHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIE 518
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR H NV++ A + L+P N A Y L
Sbjct: 519 WATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVML 556
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KNV+ W+ MIA+ A+HG AL F + +PN VTFL +L+AC
Sbjct: 280 ALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQ-MKGEGVEPNGVTFLVLLYACC 338
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPYV--W 108
++GL+ EG +F+ M+ +++++ EHYG VDL+ + P V W
Sbjct: 339 HAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIW 398
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LL AC +H ++++GE AK LDP +D Y L
Sbjct: 399 GSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLL 435
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +K+VV WS MI+++A + Q E L F + C P+ +T LS++ AC+
Sbjct: 179 ARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGV-SPDEITMLSVISACA 237
Query: 64 YSGLIEEGIKVFDIM 78
G +++ + I+
Sbjct: 238 NIGSLDKARWIHSIV 252
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F D++++ W+ M++ +A HG ++AL+ F + + +TFLS++
Sbjct: 509 IENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQ-MEVEGIDMDGLTFLSVIM 567
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETE-----------P 105
C+++GL+EEG + FD+MV D+ + ++HY VDL + ET P
Sbjct: 568 GCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGP 627
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACR+H NV++G+L A+ L+P + A Y L
Sbjct: 628 TIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLL 667
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D ++F G++ +NVV W+ ++ + G + + F+ + PN TF S+L
Sbjct: 109 DGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFR-MRAEGVWPNPFTFSSVLSMV 167
Query: 63 SYSGLIEEGIKV 74
+ G+++ G V
Sbjct: 168 ASQGMVDLGQHV 179
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ AE IF + +N++ W+ MIA + ++G+ +A+ AF ++ DG +PN VTF+S+L
Sbjct: 611 LQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLE--DGFRPNGVTFVSVL 668
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SG IE G+++F MV DF + L HY VDLLA G E +
Sbjct: 669 SACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPD 728
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL +CR + + K + + + L+P N Y L
Sbjct: 729 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLL 769
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G D++++ W+ MIAS+ + Q +AL F+ +I S+ +PN+VT +++L + +
Sbjct: 512 ARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMI--SEAEPNSVTIINVLSSFT 569
Query: 64 YSGLIEEGIKVFDIMVH---DFQLDLNLEHYGITV 95
+ + +G + + LDL+L + IT+
Sbjct: 570 HLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITM 604
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + D++VV+W+ M+ + G EA+ + + +PN+ T +++L
Sbjct: 104 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAM-LLVREMGRENLRPNSRTMVALLL 162
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC + + G V + + D N
Sbjct: 163 ACEGASELRLGRGVHGYCLRNGMFDSN 189
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 18/145 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I DK+VV W+ MI +A+HG +EAL+ F + C G P N+TF+ IL
Sbjct: 241 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM--CRMGLHPTNITFIGIL 298
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC +SG + EG +F+ M ++ ++ +EHYG V+LL E +
Sbjct: 299 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 358
Query: 105 PYVWGALLGACRIHHNVKIGELVAK 129
P +WG LLGACR+H + +GE + +
Sbjct: 359 PVLWGTLLGACRLHGKIALGEKIVE 383
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ +++ V W+ MI + +G EAL F ++ + KPN VT LS+L
Sbjct: 140 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLS 198
Query: 61 ACSYSGLIEEG 71
AC G +E G
Sbjct: 199 ACGQLGALESG 209
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
AE+IF + +++V W+ MI + +HG+ R+A AF ++ DG KPNNV+F S+L AC
Sbjct: 621 AEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQML--DDGFKPNNVSFASVLSAC 678
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL G+++F MV DF + L HYG VDLL G E + +
Sbjct: 679 SHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASI 738
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL +C+I N K+ E + L+P N + L
Sbjct: 739 WRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILL 776
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF II+KNV +W+ M+A++A+ GQ EA++ YL + KP++VTF+++L ACS
Sbjct: 554 AYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAID-LYLEMEERGVKPDHVTFIALLAACS 612
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL++EG K F+ + + + + HYG VDLL E + +W
Sbjct: 613 HGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIW 672
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+L+ ACR HHNV++ E K +DP N+ + L
Sbjct: 673 SSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLL 709
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F I +K++V W+ M+ ++ H E+ E F + S+ KP+ T +S+L
Sbjct: 450 VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIF-CKMQSSNVKPDKTTLISLLS 508
Query: 61 ACSYSGLIEEGIKV 74
+C+ G + GI V
Sbjct: 509 SCAKVGALNHGIWV 522
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ AE IF + +N++ W+ MIA + ++G+ +A+ AF ++ DG +PN VTF+S+L
Sbjct: 598 LQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLE--DGFRPNGVTFVSVL 655
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SG IE G+++F MV DF + L HY VDLLA G E +
Sbjct: 656 SACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPD 715
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL +CR + + K + + + L+P N Y L
Sbjct: 716 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLL 756
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + D++VV+W+ M+ + G EA+ + + +PN+ T +++L
Sbjct: 111 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAM-LLVREMGRENLRPNSRTMVALLL 169
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC + + G V + + D N
Sbjct: 170 ACEGASELRLGRGVHGYCLRNGMFDSN 196
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+A +F GI +K+VV W+ MIA +A HG R+AL + + + KP+ +T + +L A
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQAL-VLFESMKKAGVKPDEITMVGVLSA 501
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY----- 106
CS+SGLI+ G + F M D+ + +HY +DLL G E P+
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE A+ F ++P+N Y L
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 600
Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F + K+VV W+ M++ +A +G EA E F + H N++++ +L
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPH-----RNSISWNGLLA 178
Query: 61 ACSYSGLIEEGIKVFD 76
A ++G ++E ++F+
Sbjct: 179 AYVHNGRLKEARRLFE 194
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
AE+IF + +++V W+ MI + +HG+ R+A AF ++ DG KPNNV+F S+L AC
Sbjct: 621 AEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQML--DDGFKPNNVSFASVLSAC 678
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL G+++F MV DF + L HYG VDLL G E + +
Sbjct: 679 SHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASI 738
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL +C+I N K+ E + L+P N + L
Sbjct: 739 WRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILL 776
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F D++V+ W+ MI + HG + A+E F + + PN TFLS+L ACS
Sbjct: 376 ARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFE-EMKGTGSLPNETTFLSVLAACS 434
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
++GL++EG K F M D+ L+ +EHYG VDLL EP V+
Sbjct: 435 HAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVY 494
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC++H NV++ E A+ F L P+ Y+ L
Sbjct: 495 GAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLL 531
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA R+F + ++ V W+ ++A +A +G A+EA + G +P++VT +S+L A
Sbjct: 69 DARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPA 128
Query: 62 CS 63
C+
Sbjct: 129 CA 130
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+R F G+ +K+VV W+ MIA + ++G +A++ F L + S P+ TF+S+L+
Sbjct: 376 LEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF-LQMKGSGLDPDESTFVSVLY 434
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++G++ EG+++F MV NL+HY +D+L P+
Sbjct: 435 ACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+ LLGACRIH N+K+G +++ F ++P + YY L
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + K+V W+ M+ + A++ F ++ + K +++ + IL
Sbjct: 274 VDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILS 333
Query: 61 ACSYSGLIEEGIKV 74
+CS+SG +++G +V
Sbjct: 334 SCSHSGALQQGRRV 347
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + KNV+ W+ +IA + HGQ +EA+E F ++ P +VTFL++L
Sbjct: 371 MEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQ-EGVTPTHVTFLAVLS 429
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----------ATGETEPY---- 106
ACSYSGL + G ++F M D ++ HY ++LL A T P+
Sbjct: 430 ACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTA 489
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL ACR+H N+++G+L A+ + ++P+ Y L
Sbjct: 490 NMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVL 529
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + +K V W+ +IAS+A+HG EAL + Y + S ++ T ++
Sbjct: 270 IEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEAL-SLYFEMRDSGTTVDHFTISIVIR 328
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDL 86
C+ +E + +V H F D+
Sbjct: 329 ICARLASLEHAKQAHAALVRHGFATDI 355
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KNV+ WS MI + A+HG A++ F + + +PN VTF+ +L+AC
Sbjct: 408 AREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEV-NIEPNGVTFIGVLYACG 466
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+EEG K+F M+++ + EHYG VDL ET P+ +W
Sbjct: 467 HAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIW 526
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKND 139
G+L+ AC++H ++GE AK L+P +D
Sbjct: 527 GSLMSACQVHGEAELGEFAAKRLLELEPDHD 557
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA IF +I++++V WS MI+ +A Q +EAL+ F ++ P+ +T LS++
Sbjct: 304 VKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQ-KRSVPDQITMLSVIS 362
Query: 61 ACSYSGLIEEG 71
ACS+ G + +
Sbjct: 363 ACSHVGALAQA 373
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+FG + KNV+ W+ +I A +GQ ++ALE FYL++ + +PN+VTF+ +L ACS++G
Sbjct: 383 VFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLE-KNVEPNDVTFIGVLSACSHAG 441
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L++EG +F M DF ++ +EHYG VD+L + +W L
Sbjct: 442 LVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTL 501
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L +C++H NV+IGE K L+P + Y L
Sbjct: 502 LASCKVHKNVEIGEESLKQLIILEPTHSGDYILL 535
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++VV WS MI+ ++ + REAL+ F+ + ++ PN +T +SIL
Sbjct: 276 VDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH-EMQKANIDPNEITMVSILS 334
Query: 61 ACSYSGLIEEG 71
+C+ G +E G
Sbjct: 335 SCAVLGALETG 345
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++NV W+ M A + G E ++ F+ ++ D + + VT +S+L AC
Sbjct: 178 ARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLEL-DIRFDEVTLVSVLTACG 236
Query: 64 YSGLIEEG 71
+E G
Sbjct: 237 RLADLELG 244
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+R+F K++V+W+ MI +A HG +AL F+ + + P+ +T++ L
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH-DMRLAGMSPDGITYIGALT 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+G ++EG ++F+ M + + EHY VDLL E +
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+GACR+H N +I E+ AK L+P N Y L
Sbjct: 503 VIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLL 542
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+R+F K++V+W+ MI +A HG +AL F+ + + P+ +T++ L
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH-DMRLAGMSPDGITYIGALT 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+G ++EG ++F+ M + + EHY VDLL E +
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+GACR+H N +I E AK L+P N Y L
Sbjct: 503 VIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLL 542
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A+ +F + +NV+ WS +I+ + +HG +EAL + ++ S G KPN +TF+SIL
Sbjct: 258 VDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMV--SRGVKPNCITFISIL 315
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV----------- 107
+CS+SGL+ +G ++F+ M ++ +HY VDLL G E V
Sbjct: 316 SSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPG 375
Query: 108 ---WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC H+NV +GE+ A F L+ N + Y +L
Sbjct: 376 ASLWGALLSACATHNNVDVGEVAAYKLFELEEGNASNYVTL 416
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV-IHCSDGKPNNVTFLSIL 59
+ DA R+F + +++ V+W+ M+ +A G+ E LE F I D + ++L
Sbjct: 154 LADATRVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVDMARDLRAVPNVL 213
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
C+ G + +G ++ MV F D ++ VD+ A
Sbjct: 214 NVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYA 253
>gi|293334473|ref|NP_001170726.1| uncharacterized protein LOC100384813 [Zea mays]
gi|238007188|gb|ACR34629.1| unknown [Zea mays]
Length = 329
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +N V W+ M++ + +HG+ +EAL+ F + + P++++FL +L+
Sbjct: 8 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD-KMQKAGFVPDDISFLVLLY 66
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++++G+ FDIM D+ + + EHY +DLLA E
Sbjct: 67 ACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSA 126
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+W ALL ACR+H NV++ E ++ +ND YT
Sbjct: 127 VIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYT 164
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+ IF D+++V W+ M++ +A HG ++AL+ F + + + VTFLS++
Sbjct: 557 IESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQ-MEAEGIEMDGVTFLSVIM 615
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
C+++GL+EEG + FD M D+ + +EHY VDL + P
Sbjct: 616 GCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGP 675
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGAC++H NV++G+L A+ L+P + A Y L
Sbjct: 676 MVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLL 715
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D ++F + +NVV W+ ++ + G + +E F+ + PN+VTF S+L
Sbjct: 157 DGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR-MRAEGVWPNSVTFASVLSVV 215
Query: 63 SYSGLIEEGIKV 74
+ G+++ G +V
Sbjct: 216 ASQGMVDLGRRV 227
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F G K+VV WS MI+ A +G +A+ AF +I SD P+ TF +L
Sbjct: 273 VDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIR-SDVAPDEQTFTGVLS 331
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL------------LATGE----TE 104
ACS+SGL++EG + FD+M ++ L N+ HYG VDL L T E +
Sbjct: 332 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPD 391
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRIH +V +GE V + L + Y L
Sbjct: 392 ATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLL 432
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILF 60
D A ++FG + ++ V W+ +I+ A + + ++AL+ F + S +P++VT + +L
Sbjct: 171 DGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQ 230
Query: 61 ACSYSGLIEEGIKVF 75
AC+ G ++ G +V+
Sbjct: 231 ACTSLGALDFGEQVW 245
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KNV+ WS MI + A+HG A+ F+ + + +PN VTF+ +L+ACS
Sbjct: 403 AREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKE-QNIEPNGVTFIGVLYACS 461
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+EEG K F M+++ ++ EHYG VDL ET P+ +W
Sbjct: 462 HAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIW 521
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKND 139
G+L+ AC+ H +++GE A L+P +D
Sbjct: 522 GSLMSACQNHGEIELGEFAATRLLELEPDHD 552
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA IF +++K++V WS MI+ +A Q EAL+ F + P+ +T LS++
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFN-EMQRRRIVPDQITMLSVIS 357
Query: 61 ACSYSGLIEEG 71
AC+ G + +
Sbjct: 358 ACANVGALVQA 368
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F G+ +++VV WS +I+++A+HG+ + ALE F + + +P+++TFL++L AC
Sbjct: 250 NASNVFCGMKERDVVAWSSLISAYALHGEAKNALEIFR-QMELAKVQPDDITFLAVLKAC 308
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL +E + F M ++L +HY VD+L+ +
Sbjct: 309 SHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVDVLSRAGRLYEAYKVIQEMPVKVTAKA 368
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR + +++ E+V + F ++P N A Y L
Sbjct: 369 WGALLGACRTYGEIELAEIVGRALFEIEPDNPANYVLL 406
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A ++F I +NVV+W+ MI+ + + R+AL+ F + +PN TF ++++
Sbjct: 116 SARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMF----DAMEIEPNVSTFNALIYG- 170
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLN 87
SG+ + IK QL L
Sbjct: 171 -LSGVKDGSIKAIAFYWKMRQLGLK 194
>gi|125533989|gb|EAY80537.1| hypothetical protein OsI_35717 [Oryza sativa Indica Group]
Length = 543
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 16/143 (11%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
+VV WS MI ++A HG+ EAL+ F L+ + +PN+ TF ++L AC +SGL++EG+K
Sbjct: 354 SVVSWSAMINAYANHGEAEEALKLFSLMRN-EGVRPNSFTFTAVLMACCHSGLVDEGLKH 412
Query: 75 FDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY-------------VWGALLGACRIHH 119
F+ + D+Q+ LEHY VD+L A E Y VWGA LG CR+H
Sbjct: 413 FNSIATDYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGGCRLHG 472
Query: 120 NVKIGELVAKDPFHLDPKNDAYY 142
V++ E VAK+ F + +Y
Sbjct: 473 MVELAEYVAKELFDSGSNDVTFY 495
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 1 MDDAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLS 57
++ A +FG I K N+V W+ +I++ A+HG +EALE F + C KPN +TFLS
Sbjct: 275 IESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL--KPNRITFLS 332
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------ETEPY 106
+L ACS+ GL+EEG+K+F MV++ Q+ +++HYG +D+L E Y
Sbjct: 333 VLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDY 392
Query: 107 V-----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V W LLGAC H NV++G V + ++ K Y L
Sbjct: 393 VVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLL 436
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F I K+++ W+ MIA + +HG EA+ F + + +P+ +F +IL ACS
Sbjct: 551 AQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN-EMRIAGIEPDESSFSAILNACS 609
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YVW 108
+SGL+ EG K F+ M ++ ++ LEHY VDLLA E+ P +W
Sbjct: 610 HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 669
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G LL CRIHH+VK+ E VA+ F L+P N YY L
Sbjct: 670 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 706
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+R+F K++V+W+ MI +A HG +AL F+ + + P+ +T++ L
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH-DMRLAGMSPDGITYIGALT 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+G ++EG ++F+ M + + EHY VDLL E +
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+GACR+H N +I E AK L+P N Y L
Sbjct: 503 VIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLL 542
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + R+F + +KN V W+ +I+++ HG +E L F+ ++ + +P++VTFL I+
Sbjct: 513 LNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLR-NGIQPDHVTFLGIIS 571
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY---- 106
AC ++G ++EGI+ + +M ++ + +EHY D+ T + P+
Sbjct: 572 ACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDA 631
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGAC IH NV++ E+ +K F LDP N YY L
Sbjct: 632 GVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLL 671
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+ +F I K+ V+W+ M+ + +G A++ F + H S+ KPN+VTF +L
Sbjct: 109 LSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRH-SEIKPNSVTFACVLS 167
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ +++ G ++ I V
Sbjct: 168 VCASEAMLDLGTQLHGIAV 186
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A + F + +N++ WS MI+ + +HG REAL F + + KP+++ F+ +L
Sbjct: 350 LEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMK--ASIKPDHIAFVMVLS 407
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GLI EG + F M DF + EHY VDLL E + +
Sbjct: 408 ACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDA 467
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N++ E A+ F+LD +N Y L
Sbjct: 468 GVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILL 507
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F GI+DK++V W+ MI ++ ALE F + P++VT LS++
Sbjct: 249 IDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFK-QMKLLGIVPDSVTLLSLIH 307
Query: 61 ACS 63
A S
Sbjct: 308 AVS 310
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A R+F K+VV+W+ MI + +HG ++A++ F ++ + P++V+FL++L+
Sbjct: 619 MNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQ-TGLTPDHVSFLALLY 677
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS+S L+EEG DIMV ++L EHY VD+L +G+TE
Sbjct: 678 ACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKS 737
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW ALLGACR+H N + + A L+P N Y
Sbjct: 738 AVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNY 774
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGK-PNNVTFLSI 58
+DDA R+F G+ + V W+ ++ ++ G EA+ + + + G P+ T S+
Sbjct: 111 VDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASV 170
Query: 59 LFACSYSG 66
L AC G
Sbjct: 171 LKACGAEG 178
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ ++ W+ +I A++G E EA+E F+ +I S+ P+ VTF+ +L AC+++G
Sbjct: 312 VFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSE-TPDEVTFIGVLTACTHAG 370
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+++G + F M+ + + N+ HYG +DLL +WG L
Sbjct: 371 LVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTL 430
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L ACR+H N +IGELVA+ LDP+N Y L
Sbjct: 431 LAACRVHGNSEIGELVAERLLELDPENSMVYILL 464
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + +++ V W+ MI + + REALE F + + S+ + T +S++
Sbjct: 205 VDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQY-SNVSADEFTMVSVIT 263
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 264 ACAQLGALEMG 274
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
++DA ++F + K+VV W+ MI+ +A HG +AL YL D KP+ +TF+++
Sbjct: 278 LEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKAL---YLFDKMRDEGMKPDWITFVAV 334
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-- 106
L AC+++G ++ GI+ F+ MV D+ ++ +HY VDLL G + P+
Sbjct: 335 LSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKP 394
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++G LLGACRIH N+++ E AK+ +LDP++ A Y L
Sbjct: 395 HSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQL 436
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE+ F + KN+V W+ MIA + + Q L+ F ++ S +PN + S+L CS
Sbjct: 180 AEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVE-SGFRPNPSSLSSVLLGCS 238
Query: 64 YSGLIEEGIKVFDIM 78
++ G +V ++
Sbjct: 239 NLSALKLGKQVHQLI 253
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ +KNV +S M+ A HG+ REA+ F ++ +D PN+VTF+ +L
Sbjct: 329 IDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLT 388
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY- 106
ACS++G++ +G F M + + + +HY VDLL EP+
Sbjct: 389 ACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHG 448
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH ++ ++ A+ F L+P+ Y L
Sbjct: 449 GVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLL 488
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 1 MDDAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLS 57
++ A +FG I K N+V W+ +I++ A+HG +EALE F + C KPN +TFLS
Sbjct: 275 IESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL--KPNRITFLS 332
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------ETEPY 106
+L ACS+ GL+EEG+K+F MV++ Q+ +++HYG +D+L E Y
Sbjct: 333 VLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDY 392
Query: 107 V-----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V W LLGAC H NV++G V + ++ K Y L
Sbjct: 393 VVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLL 436
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 24/151 (15%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAF----YLVIHCSDGKPNNVTFLSILFACSYSGLIE 69
K+V W+ ++ +A GQ + A+E F L IH P+ +TF+S+L ACS SG++
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIH-----PDEITFISLLCACSKSGMVT 617
Query: 70 EGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGA 114
EG++ F+IM + + L NL+HY VD+L + +WGALL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677
Query: 115 CRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
CRIH NV++GE+ AK F D K+ YY L
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILL 708
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++AE +F + K+VV W+ MIAS H +A+E Y ++ P+ +T +S+L
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET-YKMMELEGILPDEITLVSVLS 408
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ G ++ GI++ +I +
Sbjct: 409 ACACIGHLDLGIRLHEIAI 427
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F I KNVV W+ +I I+ + EAL F + KPN+VT +S+L
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTLISVLS 508
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 509 ACARIGALMRGKEI 522
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++++ ++F + +++++W+ MI ++ +HG +A+ F + + P+++TFL++L+
Sbjct: 601 VENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTD-QNVIPDHITFLALLY 659
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY------------ 106
ACS+SGL+ EG + F+IM + +QL+ EHY VDLL+ + E Y
Sbjct: 660 ACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSS 719
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+W ALLGAC IH N ++GEL AK+ D +N Y
Sbjct: 720 EIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYA 757
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F I K++V W+ MI +G EALE FY + ++ +P+++ +S L
Sbjct: 500 IDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ-TNIQPDSIAIISALS 558
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
A + +++G ++ ++
Sbjct: 559 ATANLSSLKKGKEIHGFLIR 578
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA R+F ++ ++ V W+ +++ + +AL ++ + S KP+ V+ L+++
Sbjct: 299 MEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALN-YFRDMQNSGQKPDQVSVLNLIA 357
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
A SG + +G +V + + LD N++ VD+ A
Sbjct: 358 ASGRSGNLLKGKEVHAYAIRN-GLDSNMQIGNTLVDMYA 395
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 24/151 (15%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAF----YLVIHCSDGKPNNVTFLSILFACSYSGLIE 69
K+V W+ ++ +A GQ + A+E F L IH P+ +TF+S+L ACS SG++
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIH-----PDEITFISLLCACSKSGMVT 617
Query: 70 EGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGA 114
EG++ F+IM + + L NL+HY VD+L + +WGALL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677
Query: 115 CRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
CRIH NV++GE+ AK F D K+ YY L
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILL 708
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++AE +F + K+VV W+ MIAS H +A+E Y ++ P+ +T +S+L
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET-YKMMELEGILPDEITLVSVLS 408
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ G ++ GI++ +I +
Sbjct: 409 ACACIGHLDLGIRLHEIAI 427
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F I KNVV W+ +I I+ + EAL F + KPN+VT +S+L
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTLISVLS 508
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G ++
Sbjct: 509 ACARIGALMRGKEI 522
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A +F + +K+V+ W+ +IA A+HG +AL +Y G P ++TF ++L
Sbjct: 300 VEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL--WYFSEMAKKGFVPRDITFTAVL 357
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV-------- 107
ACS++G++E G+++F+ M D ++ LEHYG VDLL + E +V
Sbjct: 358 TACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPN 417
Query: 108 ---WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGACRIH NV++GE V K + P+ +Y L
Sbjct: 418 APIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLL 458
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A +F + ++N+V WS MI+ +A + +A+E F + N + ++ +
Sbjct: 200 KSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFE-ALQAEGVVANETVMVGVISS 258
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETEPYV------------- 107
C++ G + G K + ++ + +L LNL VD+ A G E V
Sbjct: 259 CAHLGALAMGEKAHEYVMRN-KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLC 317
Query: 108 WGALLGACRIH 118
W AL+ +H
Sbjct: 318 WTALIAGLAMH 328
>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
Length = 582
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 10 GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIE 69
G+ +VV WS MI ++A HG+ EAL+ F L+ + +PN+ TF ++L AC +SGL++
Sbjct: 388 GLRGHSVVSWSAMINAYANHGEAEEALKLFSLMRN-EGVRPNSFTFTAVLMACCHSGLVD 446
Query: 70 EGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY-------------VWGALLGA 114
EG+K F+ + D+Q+ LEHY VD+L A E Y VWGA LG
Sbjct: 447 EGLKHFNSIATDYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGG 506
Query: 115 CRIHHNVKIGELVAKDPFHLDPKNDAYY 142
CR+H V++ E VAK+ F + +Y
Sbjct: 507 CRLHGMVELAEYVAKELFDSGSNDVTFY 534
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ + +V W+ M+A + HG +A++ F ++ G + VT +S+L AC+
Sbjct: 279 ARVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGF-DCVTLVSVLSACA 337
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
SG + G V + + LD + + VD+ A
Sbjct: 338 RSGALGTGKWVHE-LARSHGLDTDARIGNVLVDMYA 372
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A IF G+ KN V W+ MI A HG EAL F ++ P+++TFL +L
Sbjct: 240 LQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLS 299
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++++G + FDIM ++ + ++HYG VD+L +
Sbjct: 300 ACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISNMPMQCNA 359
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL ACR+H NV++G+ V K L+P + + Y L
Sbjct: 360 IVWRTLLAACRLHGNVELGKQVRKQLLELEPDHSSDYVLL 399
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + ++F I + +V W+ +I H G+ EALE F ++ +P+ TF+ IL
Sbjct: 139 IEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGI-EPDEATFVVILS 197
Query: 61 ACSYSGLIEEG 71
ACS G ++ G
Sbjct: 198 ACSALGALDFG 208
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 1 MDDAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLS 57
++ A +FG I K N+V W+ +I++ A+HG +EALE F + C KPN +TFLS
Sbjct: 275 IESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL--KPNRITFLS 332
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------ETEPY 106
+L ACS+ GL+EEG+K+F MV++ Q+ +++HYG +D+L E Y
Sbjct: 333 VLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDY 392
Query: 107 V-----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V W LLGAC H NV++G V + ++ K Y L
Sbjct: 393 VVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLL 436
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F +++ +V W+ MI+ A HG +EA+ F ++ + KPN +TF+ +L
Sbjct: 49 IEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQ-TGVKPNQITFVVVLS 107
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS++GL++EG FD M D + EHY VDL E
Sbjct: 108 GCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNA 167
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLGACR+H N+++ E + L P+N Y L
Sbjct: 168 SVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLL 207
>gi|356510408|ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 481
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++D+E+IF I N+V W+ MI+ + HG+ E+L F ++ +G +PN VT +IL
Sbjct: 263 LNDSEKIFRTIRHVNLVTWTTMISCYGAHGKGEESLLLFKKMV--DEGFRPNPVTLTAIL 320
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
+CS SG+I++G +F + D+ + +EHY VDLL+
Sbjct: 321 ASCSRSGMIDQGKHIFSSICSDYGFEPTVEHYACMVDLLSRCGYLVEALQLLESKKSSVT 380
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL C +H NV+IGE+ A F L+P N + Y +L
Sbjct: 381 GSMWGALLAGCVMHKNVEIGEIAAHRLFQLEPDNASNYIAL 421
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+R+F ++ +VV W+ M+ A HG +E L+ F ++ +PN ++FL +L
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI-EPNEISFLCVLT 399
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++EG+ F++M ++++ ++ HY VDLL E
Sbjct: 400 ACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACR+H N+++G A+ F LDP
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDP 489
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A+ F G+ K+ V W+ +I+ HA G+ AL + + + +P + T+ S+L
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW-KMQRKNFQPTHFTYSSVLS 298
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 299 ACASIGALEQG 309
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + K++V W+ +IA + + + R+AL F ++ +PN+ T S+L
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLK 197
Query: 61 ACSYSGLIEEGIKV 74
A ++ G ++
Sbjct: 198 ASGSEHGLDPGTQL 211
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + ++F + +NVV W+ +I A+HG+ REALEAFY ++ S KP+ + F+ +L
Sbjct: 247 IDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVE-SGLKPDRIAFMGVLV 305
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG +VF M ++ ++ LEHYG VDLL
Sbjct: 306 ACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNS 365
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGAC H+ + + E + LDP +D Y L
Sbjct: 366 VIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLL 405
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSILFACSY 64
++F + ++++ WS +I+ A G EAL F + + SD P+ V LS++ A S
Sbjct: 149 KLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSS 208
Query: 65 SGLIEEGIKV 74
G +E GI V
Sbjct: 209 LGALELGIWV 218
>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 501
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D R+F + +NV+ W+ +I+ + HG+ E L+ F + +PN VTFL +L A
Sbjct: 261 SDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKE-EGCRPNPVTFLVVLTA 319
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C++ GL+++G + F M D+ ++ +HY VD L + P
Sbjct: 320 CNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPP 379
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH NVK+ EL A LDP N Y
Sbjct: 380 VWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNY 415
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+D A R F + +VV WS +I+ HA HG R+AL F ++ D K PN +TFL +
Sbjct: 471 VDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMV---DAKVVPNEITFLGV 527
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L ACS+ GL++EG++ ++ M D+ L ++H VDLL
Sbjct: 528 LTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHA 587
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+P +W +LL +CRIH +++ G+LVA L+P + A Y L
Sbjct: 588 DPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVIL 629
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 3 DAERIFGGIIDKNVVIWSGMIA----SHAIHGQE--REALEAFYLVIHCSDGKPNNVTFL 56
+A +F + + NVV+++ MIA + + G+E EAL Y + +P TF
Sbjct: 265 EAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL-TLYSEVQSRGMQPTEFTFS 323
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
S+L AC+ +G +E G ++ ++ + FQ D
Sbjct: 324 SVLRACNLAGYLEFGKQIHGQVIKYTFQED 353
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+R+F ++ +VV W+ M+ A HG +E L+ F ++ +PN ++FL +L
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI-EPNEISFLCVLT 399
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++EG+ F++M ++++ ++ HY VDLL E
Sbjct: 400 ACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACR+H N+++G A+ F LDP
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDP 489
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A+ F G+ K+ V W+ +I+ HA G+ AL + + + +P + T+ S+
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW-KMQRKNFQPTHFTYSSVFS 298
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 299 ACASIGALEQG 309
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + K++V W+ +IA + + + R+AL F ++ +PN+ T S+L
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL-QPNHFTLSSLLK 197
Query: 61 ACSYSGLIEEGIKV 74
A ++ G ++
Sbjct: 198 ASGSEHGLDPGTQL 211
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ +F + K+VV W+ MI ++A+HG +EAL F ++ S +PN+VTF +L CS
Sbjct: 369 SRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKML-LSRVQPNSVTFTGVLSGCS 427
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+S L+EEG+++F+ M D ++ + HY VD+ + E W
Sbjct: 428 HSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAW 487
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR++ NV++ ++ AK F ++P N Y SL
Sbjct: 488 GALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSL 524
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ +F + K+VV W+ MI ++A+HG +EAL F ++ S +PN+VTF +L CS
Sbjct: 455 SRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKML-LSRVQPNSVTFTGVLSGCS 513
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+S L+EEG+++F+ M D ++ + HY VD+ + E W
Sbjct: 514 HSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAW 573
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR++ NV++ ++ AK F ++P N Y SL
Sbjct: 574 GALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSL 610
>gi|2245003|emb|CAB10423.1| hypothetical protein [Arabidopsis thaliana]
gi|7268397|emb|CAB78689.1| hypothetical protein [Arabidopsis thaliana]
Length = 459
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D R+F + +NV+ W+ +I+ + HG+ E L+ F + +PN VTFL +L A
Sbjct: 219 SDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKE-EGCRPNPVTFLVVLTA 277
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C++ GL+++G + F M D+ ++ +HY VD L + P
Sbjct: 278 CNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPP 337
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH NVK+ EL A LDP N Y
Sbjct: 338 VWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNY 373
>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
Length = 529
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
MD A +F G+ ++VV +S MI +HG+ EA+ F S + PN VTF+ +
Sbjct: 334 MDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFK---EMSKARIDPNAVTFVGL 390
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE------------P 105
L A S++GL+EE F M ++++ ++EHY I VD+L G+ E P
Sbjct: 391 LSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIPVCP 450
Query: 106 Y--VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ VWGALL ACR+H+N+++GE+ A F L+PK YY L
Sbjct: 451 HASVWGALLLACRLHNNIELGEVAASKCFELEPKESGYYILL 492
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + K++ W+ MI+ +A +G REAL F ++ PN TF S++ AC
Sbjct: 234 AANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISAC 293
Query: 63 SYSGLIEEGIKVFDIM 78
S G + G+ V M
Sbjct: 294 SQLGDLRFGLWVESFM 309
>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF + +N+V W+ MIA + HG EA+ F + S+ P+ VTFL+++ +CS
Sbjct: 1006 AQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKR-SETAPDEVTFLALITSCS 1064
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SG++EEG+ +F +M ++ ++ +EHY VDLL + + VW
Sbjct: 1065 HSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVW 1124
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL ACR H N+++GELVA + ++P + Y L
Sbjct: 1125 LCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPL 1161
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ DKNV+ W+ MI A+HG+ ++L F + S KP+++ F+ L AC+++G
Sbjct: 282 VFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFS-QMESSGVKPDDIAFIGALCACTHTG 340
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+++G ++F+ MV+++ + +EHYG VDLLA + + +WGAL
Sbjct: 341 LVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGAL 400
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ CR H NV++ E V K L+P Y L
Sbjct: 401 MAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLL 434
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + ++N V WS M+ + G REAL F + +P++ + +L AC
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFS-QMQAQGVRPDDTVLVGVLAAC 235
Query: 63 SYSGLIEEG 71
+ G +E+G
Sbjct: 236 AQLGALEQG 244
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D+A R+F G+ +KN V W+ MI++ A HGQ +EAL F +++ PN++TF+ +L
Sbjct: 380 LDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVL 439
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC ++GL++EG ++F +M F L +EHY VDL + + +
Sbjct: 440 SACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPD 499
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ GALLGAC+ N+ I E V K L+P N Y
Sbjct: 500 EVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNY 537
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF + K+ V W+ MI +A +G EA++ F + S P+ +T + IL AC+
Sbjct: 282 ARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ-DMRMSSTAPDQITLIGILSACA 340
Query: 64 YSGLIEEGIKV 74
G ++ G +V
Sbjct: 341 SIGALDLGKQV 351
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F I K++V W+ MI+ ++ EA+ F ++ + +PN ++ +S+L
Sbjct: 178 MGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMME-AGFQPNEMSLVSVLG 236
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC G ++ G V + +V + ++ LN
Sbjct: 237 ACGELGDLKLGTWVEEFVVEN-KMTLN 262
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + ++F + +++V W+ MIA + IHG +EA +L + +P++VTF+ ++
Sbjct: 458 IDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA-TTLFLSMKNQGFEPDDVTFICLIA 516
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG FD M H + + +EHY VDLLA G + +
Sbjct: 517 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADV 576
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ +G+ V++ L P+ + L
Sbjct: 577 RVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLL 616
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ M+A +A HG A+ + +PN T +S+L +
Sbjct: 153 AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLA 212
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKI 123
G + +G V + + LD N E I LL + L+ ACR+ H + +
Sbjct: 213 QHGALFQGTSVHAYCLRAY-LDQNEEQVLIGTALLDMYAKCKH----LVYACRVFHGMTV 267
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 17/152 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A IF G+ +KNV+ W+ +IA + +HGQ A++ F +I SD P+ F+S+L AC
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMIS-SDELPDGAAFVSVLSAC 371
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++GL E+G+ F M D+ L EHY VDLL E + V
Sbjct: 372 SHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431
Query: 108 WGALLGACRIHHNVKIGELV-AKDPFHLDPKN 138
WGALLGAC+IH NV++ EL K +P++
Sbjct: 432 WGALLGACKIHRNVELAELAFEKRKLKKEPES 463
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ +K ++ W+ MI+ +A +G L+ Y + + P+ VT + +L
Sbjct: 210 VDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD-LYRKMEFTGIVPDPVTLVGVLS 268
Query: 61 ACSYSGLIEEGIKV 74
+C++ G G +V
Sbjct: 269 SCAHLGAHAAGREV 282
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+E+ F + +K+ + W+ M++++A+HGQ A+ A + V+ S+ + ++V+++S+L AC
Sbjct: 657 SEKCFHEMENKDTISWNAMLSAYAMHGQGELAV-ALFSVMQESNVRVDSVSYISVLSACR 715
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
+SGLI+EG +F M ++ ++EHY VDLL T E + VW
Sbjct: 716 HSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVW 775
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+IH NV +GE+ L+P+N ++ L
Sbjct: 776 GALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVL 812
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 5 ERIFGGIIDKNV---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
ER+F ++ K+V V W+ MIA + +G EA+ F + + +PN VTF++IL A
Sbjct: 556 ERLF--LLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRR-MKLENVRPNLVTFVTILPA 612
Query: 62 CSYSGLIEEGI 72
SY ++ E +
Sbjct: 613 VSYLSILREAM 623
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F G+ K++V W+ M+A +A HG R+AL F +I + KP+ +T + +L
Sbjct: 429 IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMI-TAGVKPDEITMVGVLS 487
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL + G + F M D+ + N +HY +DLL E +
Sbjct: 488 ACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDA 547
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N+++GE A+ F ++P N Y L
Sbjct: 548 ATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLL 587
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 22/163 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---KPNNVTFLS 57
+++A+ +F +KNVV W+ MI ++A HG +AL+ F +C D KP+ TF S
Sbjct: 840 LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFF----NCMDKEGIKPDGSTFTS 895
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETE------PY- 106
IL AC++SGL+ EG ++F + L +EHYG V LL E E P+
Sbjct: 896 ILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFP 955
Query: 107 ----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACRIH NV + E A + L+ +N A Y L
Sbjct: 956 PDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLL 998
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA +F + +NV+ W+ MI A G++R+A E F+ + + DG KP TF SIL
Sbjct: 638 LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQN--DGFKPVKSTFSSIL 695
Query: 60 FACSYSGLIEEGIKVFD-IMVHDFQLD 85
AC S ++EG KV I+ ++LD
Sbjct: 696 KACMSSACLDEGKKVIAHILNSGYELD 722
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+ +F G ++++ W+ MIA HA HG EA +L + +P+ +TF S+L C
Sbjct: 539 EAQNVFEGTRARDIISWNSMIAGHAQHG-SYEAAYKLFLEMKKEGLEPDKITFASVLVGC 597
Query: 63 SYSGLIEEGIKVFDIMVHD-FQLDLNL 88
+E G ++ +++ QLD+NL
Sbjct: 598 KNPEALELGRQIHMLIIESGLQLDVNL 624
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + +++++ W+ MIA +A +G AL+ F + N +F+SIL
Sbjct: 739 MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQ-FAYQMQEQGVVLNKFSFVSILN 797
Query: 61 ACSYSGLIEEGIKVF-DIMVHDFQLDLNL 88
ACS +EEG +V +I+ Q D+ +
Sbjct: 798 ACSSFSALEEGKRVHAEIVKRKMQGDVRV 826
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A++ D++VV+++ +IA+ A HG EA E +Y + SDG N T+LS+L AC
Sbjct: 338 AKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMR--SDGVVMNRTTYLSVLNAC 395
Query: 63 SYSGLIEEG 71
S S + G
Sbjct: 396 STSKALGAG 404
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + ++V+ W+ +I+ +A G +++A + F + + P+ +T++SIL
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFE-EMQTAGFIPSKITYISILT 191
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDLNLEH-----YGITVDL 97
AC +E G K+ ++ +Q D +++ YG DL
Sbjct: 192 ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++++ W+ +IA +A EA++ Y + KP VTFL +L
Sbjct: 436 LPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK-LYKQMQSEGVKPGRVTFLHLLS 494
Query: 61 ACSYSGLIEEG 71
AC+ S +G
Sbjct: 495 ACTNSSAYSDG 505
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F G+ ++V W+ MI+ +A +GQ EAL F +++ S +P++VTF+ +L
Sbjct: 314 MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLL-SSGFRPDHVTFVGVLS 372
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
AC+++GL+++G+ +F + + ++ +HY +DLL+ T +P
Sbjct: 373 ACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNK 432
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH NV++ A+ F ++P+N A Y +L
Sbjct: 433 FLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTL 472
>gi|242096420|ref|XP_002438700.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
gi|241916923|gb|EER90067.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
Length = 431
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 20/161 (12%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA R+F ++NV +W+ +I+ H G+ EAL F + +DG +PN+VTFL++L A
Sbjct: 192 DAHRVFAAAPERNVTMWTAVISGHGQQGRVAEALALFDRMA--ADGLRPNDVTFLAVLSA 249
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETEP 105
C++ GL++EG++ F M ++ L HY VD+LA +
Sbjct: 250 CAHGGLVDEGLRRFSSMSMEYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQEHS 309
Query: 106 YVWGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGA+LGACR H +V++ EL A+ F L P N Y L
Sbjct: 310 VVWGAILGACRKHGGDVELVELAARRFFRLQPGNAGKYLVL 350
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHG----QEREALEAFYLVIHCSDGKPNNVTFLSIL 59
A+++F G+ ++VV W+ +I+ A G QER A+E F + P+ TF S+L
Sbjct: 89 AQKLFDGMPQRSVVAWNAVISGCARGGSAEAQER-AVELFD-AMRAEGLAPDQFTFASVL 146
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC+ + G +V + V
Sbjct: 147 CACARLAALGHGRRVHGVAV 166
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +N V W+ ++ + +HG+ EAL+ FY + P+ VTF+ +L+
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGL-VPDGVTFVVVLY 589
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++++GI F+ M DF + EHY VDLL+ + P
Sbjct: 590 ACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTP 649
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL ACR++ NV++GE A L+ ND YT L
Sbjct: 650 AVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 689
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
DDA +F I I+ NVV WS +IA +A G EAL+ F + C +PN VT +S
Sbjct: 314 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS-EPNVVTLVS 372
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
+L C+ +G + G + H + LNL+ DL+
Sbjct: 373 LLSGCALAGTLLHGKETH---CHAIKWILNLDENDPGDDLM 410
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEG 71
D++VV W+ +I +A HG+ EALE F ++ + PN T L AC+ G + G
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498
Query: 72 IKV 74
++
Sbjct: 499 RQI 501
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+R+F K+VV+W+ MI +A HG EAL F + + P+ +T++ +L
Sbjct: 384 LDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFD-DLRLARMAPDGITYIGVLT 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+G ++EG ++F+ M + + L HY VDLL E +
Sbjct: 443 ACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDA 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+GACR+H N +I E+ AK L+P + Y L
Sbjct: 503 IIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLL 542
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F I +++ V W+ M+A + HG EA++ F ++ PN +TF +++ AC
Sbjct: 571 EARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLK-ERVPPNEITFTAVISAC 629
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY-----------V 107
+GL++EG ++F IM DF++ +HYG VDLL E E + V
Sbjct: 630 GRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISV 689
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+ H NV++ E A L+P N + Y +L
Sbjct: 690 WHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTL 727
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHG-QEREALEAFYLVIHCSDGK---PNNVTFL 56
+ DA F + ++V+ WS MIA +A G Q++E+L+ + ++ + PN VTF+
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLDLNLE 89
SIL ACS G +E+G ++ +I F+ D +L+
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQ 424
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
E++F + ++VV WS MIA++A + +A + F + ++ +PN +TFLSIL AC+
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD-ANIEPNRITFLSILKACNN 191
Query: 65 SGLIEEGIKVFDIM 78
++E+ ++ ++
Sbjct: 192 YSMLEKAREIHTVV 205
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF + ++NVV W+ +I ++A H + EA E + ++ PN VTF+S+L +C+
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS-PNAVTFVSLLNSCNTPE 294
Query: 67 LIEEGIKV 74
+ G ++
Sbjct: 295 ALNRGRRI 302
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ AE++F + +NVV W+ MIA +A G + E + +P+ VT +SIL
Sbjct: 468 LTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE-LLSSMKVEGFQPDRVTIISILE 526
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC +E G +VH + L LE
Sbjct: 527 ACGALSALERG-----KLVHAEAVKLGLE 550
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 86/146 (58%), Gaps = 19/146 (13%)
Query: 1 MDDAERIFG--GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
++DA +FG G D+++V W+ M+ +A+HG REAL AF + P ++TF+ +
Sbjct: 313 LEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQ-LRAQGLWPTDITFIGV 371
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------ETE 104
L ACS+SGL++EG ++F M ++ ++ +EHYG VDLL T+
Sbjct: 372 LNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTK 431
Query: 105 P--YVWGALLGACRIHHNVKIGELVA 128
P +W +LL ACR+H N+++G+ +A
Sbjct: 432 PDAVMWASLLAACRLHKNMELGQRIA 457
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ K+++ W+ M+ + HG+ EAL F ++ S +P+ V+ + L
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLR-SGVEPDEVSVVLALS 267
Query: 61 ACSYSGLIEEG 71
A + G E G
Sbjct: 268 AVAQLGTAESG 278
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 16/155 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+ +F II+KNVV W+ MI ++A HG +AL F+ + KP+ TF SIL AC
Sbjct: 787 EAQEVFDNIIEKNVVTWNAMINAYAQHGLASKAL-GFFNCMEKEGIKPDGSTFTSILSAC 845
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETE------PY-----V 107
+++GL+ EG ++F M ++ + +EHYG V LL E E P+ V
Sbjct: 846 NHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAV 905
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W LLGACRIH N+ + E A + L+ +N A Y
Sbjct: 906 WETLLGACRIHGNIALAEHAANNALKLNARNPAVY 940
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSIL 59
+D A++ F G D++VV+++ +IA+ A HG EA E +Y + SDG N T+LSIL
Sbjct: 280 VDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR--SDGVALNRTTYLSIL 337
Query: 60 FACSYSGLIEEG 71
ACS S +E G
Sbjct: 338 NACSTSKALEAG 349
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+ +F G ++V+ W+ MIA HA HG A + F + + +P+N+TF S+L C
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ-EMQNEELEPDNITFASVLSGC 542
Query: 63 SYSGLIEEGIKVF-DIMVHDFQLDLNL 88
+E G ++ I QLD+NL
Sbjct: 543 KNPEALELGKQIHGRITESGLQLDVNL 569
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F + +++V W+ +IA +A +G + A+E F + D PN +F+S+L
Sbjct: 684 MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVE-FAYQMQEQDVVPNKFSFVSLLN 742
Query: 61 ACSYSGLIEEGIKVF-DIMVHDFQLDLNL 88
ACS +EEG +V +I+ Q D+ +
Sbjct: 743 ACSSFSALEEGKRVHAEIVKRKLQGDVRV 771
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA +F + ++V+ W+ MI A G++ +A+E F+ + + +G +P TF SIL
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQN--EGFRPVKSTFSSIL 640
Query: 60 FACSYSGLIEEGIKVFD-IMVHDFQLD 85
C+ S ++EG KV I+ ++LD
Sbjct: 641 KVCTSSACLDEGKKVIAYILNSGYELD 667
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F + ++V+ W+ +I+ +A G +++A + F + + PN +T++SIL AC
Sbjct: 80 DAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFE-EMQNAGFIPNKITYISILTAC 138
Query: 63 SYSGLIEEGIKVF-DIMVHDFQLDLNLEH-----YGITVDL 97
+E G K+ I+ +Q D +++ YG DL
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++++ W+ +IA +A EA+ Y + KP VTFL +L
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR-LYKQMQSEGVKPGRVTFLHLLS 439
Query: 61 ACSYSGLIEEG 71
AC+ S +G
Sbjct: 440 ACANSSAYADG 450
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A ++F GI ++VV ++ M+ +A +E L F + S+G P+ VT++++L
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQM--SSEGISPDKVTYINLL 236
Query: 60 FACSYSGLIEEGIKVFDIMVHD 81
A + +++EG ++ + V +
Sbjct: 237 DAFTTPSMLDEGKRIHKLTVEE 258
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F G+ ++VV W+ +I +G+ EAL+ Y V+ +PN TF+++L
Sbjct: 483 VEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQR-YEVMKSEGMRPNAATFVNVLS 541
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC L+EEG + F M D+ + +HY VD+LA +
Sbjct: 542 ACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSA 601
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACRIH NV+IGE A+ L+P+N Y SL
Sbjct: 602 AMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSL 641
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F +K+VV W+ MI+ +A G +EA F L+ +P+ TF+SIL
Sbjct: 79 VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQ-ERLEPDKFTFVSILS 137
Query: 61 ACSYSGLIEEGIKV 74
ACS ++ G ++
Sbjct: 138 ACSSPAVLNWGREI 151
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F + ++ V W+ + ++A G E+L+ ++ ++ +P+ +T++++L AC
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ-ERVRPSRITYMNVLSAC 240
Query: 63 SYSGLIEEGIKV 74
+E+G ++
Sbjct: 241 GSLAALEKGKQI 252
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +N V W+ ++ + +HG+ EAL+ FY + P+ VTF+ +L+
Sbjct: 550 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXL-VPDGVTFVVVLY 608
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++++GI F+ M DF + EHY VDLL+ + P
Sbjct: 609 ACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTP 668
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALL ACR++ NV++GE A L+ ND YT L
Sbjct: 669 AVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 708
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
DDA +F I I+ NVV WS +IA +A G EAL+ F ++ C +PN VT +S
Sbjct: 333 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS-EPNVVTLVS 391
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
+L C+ +G + G + H + LNL+ DL+
Sbjct: 392 LLSGCASAGTLLHGKETH---CHAIKWILNLDENDPGDDLM 429
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEG 71
D++VV W+ +I +A HG+ EALE F ++ + PN T L AC+ G + G
Sbjct: 458 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517
Query: 72 IKV 74
++
Sbjct: 518 RQI 520
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A+++F + K++V W+ +I + +HG A+ F ++ S+G +P+NV + +L
Sbjct: 325 LPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMV--SEGIRPDNVAMVGLL 382
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++G+ +EG K F M +QL LEHY VDLL +
Sbjct: 383 SACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPAD 442
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALLGAC+IH NV+IGE + ++P N YY
Sbjct: 443 GAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYY 480
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + +KNV+ W+ MI A+HG+ EALE F + KP+++ F+ L
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGV-KPDDIAFIGALC 452
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G ++FD MV + + +EHYG VDLLA + +
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA 512
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+ CR H NV++ E V K L+P Y L
Sbjct: 513 LIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLL 552
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F + +N V WS M+ + G REAL F + +DG +P++ + +L A
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM--QADGVRPDDTVLVGVLAA 352
Query: 62 CSYSGLIEEG 71
C+ G++E+G
Sbjct: 353 CAQLGVLEQG 362
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 16/138 (11%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R GG D++VV W+ MI +A+HG+ REALEAF + P ++TF+ +L ACS+S
Sbjct: 317 RDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQ-LRAQGLWPTDITFIGVLNACSHS 375
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVWGA 110
GL++EG +F M ++ + +EHYG VDLL + + +W +
Sbjct: 376 GLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWAS 435
Query: 111 LLGACRIHHNVKIGELVA 128
LLGACR+H N+ +G+ VA
Sbjct: 436 LLGACRLHKNLALGQRVA 453
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + K++V W+ M+ + HG+ EAL F ++ S +P+ V+ + L
Sbjct: 204 LDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLR-SGVEPDEVSVVLALS 262
Query: 61 ACSYSGLIEEG 71
A + G E G
Sbjct: 263 AVAQLGTAESG 273
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + K+VV W+ +I A++G+ A++ F + + KPN+ TF+++L
Sbjct: 291 IEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLF-MEMRKEYLKPNDATFVAVLT 349
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL+E+G ++F M D+++ LEH+G VDLL G +
Sbjct: 350 ACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNA 409
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGACR H N+K+ E+ K+ L+P N Y L
Sbjct: 410 TLWGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLL 449
>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 662
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 16/149 (10%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+ K V+ W+ MI +A HG EALE F L + +P +TF+S+L AC+++GL+EEG
Sbjct: 476 LQKEVISWNAMIGGYASHGYATEALELFKL-MRSFKVQPTYITFISVLNACAHAGLVEEG 534
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVWGALLGACR 116
++F+ MV D+ ++ +EH+ VD++ T E + VWGALLGA R
Sbjct: 535 RRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALLGASR 594
Query: 117 IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+H+NV++ + A+ L+P + Y L
Sbjct: 595 VHNNVEMARVAAEALMKLEPDSSVPYILL 623
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + RIF + +++V W+ MI+ + +HG +A+ F KPN++TF ++L
Sbjct: 651 IQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ-XFRTMGLKPNHITFTNLLS 709
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGLIEEG K F +M ++ +D +E Y VDLL+ E P+
Sbjct: 710 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 769
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH N + E A+ F L+P++ Y
Sbjct: 770 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNY 806
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + ++NV W+ ++ + G E ++ FYL+++ +P++ F +
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKVFK 198
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS G V+D M+
Sbjct: 199 ACSELKNYRVGKDVYDYML 217
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A R F I K+V +W+ M++ + G+ ++AL+ + S KP+ VT+ +I+
Sbjct: 241 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCIS-DMKLSGVKPDQVTWNAIIS 299
Query: 61 ACSYSGLIEEGIKVFDIM--VHDFQ 83
+ SG EE K F M + DF+
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFK 324
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 2 DDAERIF---GGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++A + F GG+ D NVV W+ +IA +G + EAL F ++ KPN++T
Sbjct: 308 EEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV-LEGVKPNSITIA 366
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
S + AC+ L+ G ++ + +LD +L
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDL 398
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++VV+W+ +I++ A G+ AL+ ++ S+ + N VT +S L
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALD-LLREMNLSNVEVNTVTMVSALP 608
Query: 61 ACSYSGLIEEGIKVFDIMVH------DFQLDLNLEHYG 92
ACS + +G ++ ++ +F L+ ++ YG
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 646
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
M+DA +F + KNV+ W+ +IA + HGQ EA+E F ++ +G PN+VTFL++L
Sbjct: 370 MEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLR--EGMIPNHVTFLAVL 427
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
ACSYSGL E G ++F M D ++ HY V+LL + P+
Sbjct: 428 SACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPT 487
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL ACR+H N+++G+L A++ + ++P+ Y L
Sbjct: 488 TNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVL 528
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + +K V W+ +IAS+A+HG EAL +FY + S K ++ T ++
Sbjct: 269 IEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEAL-SFYYEMRDSGAKIDHFTISIVIR 327
Query: 61 ACSYSGLIE 69
C+ +E
Sbjct: 328 ICARLASLE 336
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +K V +W+ MI+ +AIHG+ REALE +++ + + +PN +TF IL
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALE-WFMKMQTAGVEPNQMTFTGILT 359
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL+ E +F+ M ++EHYG VDLL E P
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC IH N+++G+ + K +DP + Y L
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHL 459
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + ++N++ W+ MI+ G+ +EAL F+ + + K +NV +S L AC+
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR-MQTAGIKLDNVALVSTLQACA 261
Query: 64 YSGLIEEGIKVFD-IMVHDFQLD 85
G++++G + I H+ ++D
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEID 284
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R F + D NV+ W+ +I+ A HG ++AL F+ +I + KPN+VT++++L
Sbjct: 497 LEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMI-LAGVKPNDVTYIAVLS 555
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + F M D L +EHY VDLLA + +
Sbjct: 556 ACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADA 615
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL ACR + N +IGE+ A +L+P++ A Y L
Sbjct: 616 LVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLL 655
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+R+F G+I++ V+W+ +I + G + +E F ++ DG +P+ + S++ AC
Sbjct: 199 AQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML--DDGFEPDGYSMSSMISAC 256
Query: 63 SYSGLIEEGIKVFDIMVH 80
+ G + G ++ + +
Sbjct: 257 TELGSVRLGQQLHSVALR 274
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A ++F + NV+ W+ +I+ + G + + A + + +PN++T+ ++L
Sbjct: 300 MEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLK 359
Query: 61 ACS 63
AC+
Sbjct: 360 ACA 362
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA F + KN W+ +I A +G+ REALE F + S +P +VTF+ +L
Sbjct: 372 IDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASI-EPTDVTFIGVLM 430
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+S L+EEG + FD M D+ + EHYG VDLL E
Sbjct: 431 ACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNA 490
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL +C +H NV+IGE K L+P + Y L
Sbjct: 491 VIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILL 530
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A R+F G+ ++VV WS MI+ + Q REAL A + + ++ +PN+VT +S+L
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREAL-ALFSEMQLAEVEPNDVTMVSVLS 329
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 330 ACAVLGALETG 340
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ K V W+ MI A+HG+ +A+ F + + P+++TF+++L
Sbjct: 285 LDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLT 344
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++SGL+EEG F MV +D EHYG VDLLA +
Sbjct: 345 ACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDA 404
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V GALLGACRIH N+++GE V LDP+N Y L
Sbjct: 405 AVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVIL 444
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + D NVV W+ +++ ++ G EA F L+ K N+V++ + +
Sbjct: 151 LDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELM----PCKKNSVSW-NAMI 205
Query: 61 ACSYSG-LIEEGIKVFDIMVHDFQLDLN 87
AC G E +F M + +++L+
Sbjct: 206 ACFVKGNRFREAFALFRRMRVEKKMELD 233
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + +KNV+ W+ MI A+HG+ EALE F + KP+++ F+ L
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGV-KPDDIAFIGALC 452
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G ++FD MV + + +EHYG VDLLA + +
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA 512
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+ CR H NV++ E V K L+P Y L
Sbjct: 513 LIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLL 552
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA +F + +N V WS M+ + G REAL F + +DG +P++ + +L A
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ--ADGVRPDDTVLVGVLAA 352
Query: 62 CSYSGLIEEG 71
C+ G++E+G
Sbjct: 353 CAQLGVLEQG 362
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+ ++V+ W+ MI +A HG EAL+ F L+ C + +P+ +TF+S+L AC+++GLIEEG
Sbjct: 479 LQRDVISWNAMIGGYAYHGFATEALQLFDLMKQC-NVQPSYITFISVLNACAHAGLIEEG 537
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEPYVWGALLGACR 116
+ F+ MV+ + +EHY VD++ E + VWGALLGAC+
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACK 597
Query: 117 IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+H+NV++ A+ L P++ A Y L
Sbjct: 598 VHNNVEMARAAAEALMKLQPESSAPYVLL 626
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV 42
MD AE +F + ++NVV W+ M++ + ++G +A+E F L+
Sbjct: 168 MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K++V W+ MI+ + + + A+ F L + KP+ T SIL AC
Sbjct: 370 AHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIF-LQMQLEGKKPDRHTLSSILSAC- 427
Query: 64 YSGLIE--EGIKVFDIMVHDFQLDLNLEHYGITV 95
+GL++ G ++ ++ F DL + + +T+
Sbjct: 428 -AGLVDLVLGTQIHQLVTKAFIADLPINNSLVTM 460
>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
[Vitis vinifera]
Length = 836
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ IF + +N+V W+ MIA + HG EA+ F + S+ P+ VTFL+++ +CS
Sbjct: 601 AQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKR-SETAPDEVTFLALITSCS 659
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SG++EEG+ +F +M ++ ++ +EHY VDLL + + VW
Sbjct: 660 HSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVW 719
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL ACR H N+++GELVA + ++P + Y L
Sbjct: 720 LCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPL 756
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ ++F G+ +K+ W+ MI + +HG+ +EA++ F + + P+++TFL +L AC
Sbjct: 634 QSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFE-EMQRTGRNPDDLTFLGVLTAC 692
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-------------ATGETEPYV-- 107
++SGL+ EG++ D M F L NL+HY +D+L A EP V
Sbjct: 693 NHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGI 752
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LL CRIH N+++GE VA F L+P+ Y L
Sbjct: 753 WNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLL 790
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F GI K + W+ +I +A R +L+A +L + S P+N T S+L ACS
Sbjct: 433 AQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDA-HLQMKNSGLLPDNFTVCSLLSACS 491
Query: 64 YSGLIEEGIKVFDIMVHDF 82
+ G +V ++ ++
Sbjct: 492 KLKSLRLGKEVHGFIIRNW 510
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DD+ F + KN+ W+ +I+S++ + E LE F +I + P+N TF ++ A
Sbjct: 137 DDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKA 196
Query: 62 CSYSGLIEEGI 72
C +G+ + GI
Sbjct: 197 C--AGISDVGI 205
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I +K+VV W+ M+ +A+HG ++AL F + C G +P ++TF+ +L
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEM--CMIGYQPTDITFIGVL 180
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL+ EG K F M ++ ++ +EHYG V+LL + +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P +WG LLGACR+H N+ +GE +A+ + N Y L
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLL 281
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F G+ +++ + W+ MI +A HG E L F +++ + +PN VT L++L
Sbjct: 22 IDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLN-AKVRPNEVTVLAVLS 80
Query: 61 ACSYSGLIEEG 71
AC +G +E G
Sbjct: 81 ACGQTGALETG 91
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + R+F + ++N V W+ +I+++ HG +E L F+ ++ + +P++VTFL I+
Sbjct: 513 LNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLR-NGIQPDHVTFLGIIS 571
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY---- 106
AC ++G ++EGI+ + +M ++ + +EHY D+ T + P+
Sbjct: 572 ACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDA 631
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGAC IH NV++ E+ +K F LDP N YY L
Sbjct: 632 GVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLL 671
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+ +F I K+ V+W+ M+ + +G A++ F + H S+ KPN+VTF +L
Sbjct: 109 LSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRH-SEIKPNSVTFACVLS 167
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ +++ G ++ I V
Sbjct: 168 VCASEAMLDLGTQLHGIAV 186
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 18/144 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
+ DA +F GI DK++V+W+ MI +A+HG R+ALE F V G P ++TF+ +L
Sbjct: 571 LGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF--VQSREQGLWPTDITFIGLL 628
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SG++EEG + F M ++ +D +EHYG VDLL +
Sbjct: 629 NACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPD 688
Query: 105 PYVWGALLGACRIHHNVKIGELVA 128
+W +LL ACR+H N+ +G+ +A
Sbjct: 689 AVMWVSLLAACRLHKNMSLGQQIA 712
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ K+ V W+ MI + HG+ EAL F ++ S +P+ VT + +L
Sbjct: 469 LDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLG-SGVEPDEVTVVLVLS 527
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE-------------HYGITVDLL-ATGETEPY 106
A + G +E G + + + ++ L++ G VD+ G+ +
Sbjct: 528 AVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587
Query: 107 VWGALLGACRIHHNVK 122
VW A++ +H + +
Sbjct: 588 VWNAMINGYAMHGDSR 603
>gi|242032219|ref|XP_002463504.1| hypothetical protein SORBIDRAFT_01g000920 [Sorghum bicolor]
gi|241917358|gb|EER90502.1| hypothetical protein SORBIDRAFT_01g000920 [Sorghum bicolor]
Length = 444
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F + D++VV+WS +++++A HG+ A+ F + D +P+++ FLS+L AC+
Sbjct: 245 AQRVFNQVHDRDVVVWSSLVSAYAFHGRAEVAMSLFQHMEDQDDVRPDSIMFLSLLAACA 304
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+SG ++ ++ FD++ + ++ +HY VD+L T P W
Sbjct: 305 HSGRADDALQYFDVLTRRYGVEACGDHYSCMVDVLGRAGRLHQAYELIRTMPVKVTAKAW 364
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR H V++ E+ + F ++P+N + SL
Sbjct: 365 GALLAACRKHGEVQLAEVAGRALFEIEPENAGNFVSL 401
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +K V +W+ MI+ +AIHG+ REALE +++ + + +PN +TF IL
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALE-WFMKMQTAGVEPNQMTFTGILT 359
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL+ E +F+ M ++EHYG VDLL E P
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC IH N+++G+ + K +DP + Y L
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHL 459
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + ++N++ W+ MI+ G+ +EAL F+ + + K +NV +S L AC+
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR-MQTAGIKLDNVALVSTLQACA 261
Query: 64 YSGLIEEGIKVFD-IMVHDFQLD 85
G++++G + I H+ ++D
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEID 284
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + +KNV+ W+ MI A+HG+ EALE F + KP+++ F+ L
Sbjct: 187 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGV-KPDDIAFIGALC 245
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G ++FD MV + + +EHYG VDLLA + +
Sbjct: 246 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA 305
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+ CR H NV++ E V K L+P Y L
Sbjct: 306 LIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLL 345
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + K++V W+ M+ + A +G REA+ F + C N +TFLSIL
Sbjct: 193 MIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-VHLNQITFLSILT 251
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + FD+M + L+ ++HY VDLL +
Sbjct: 252 ACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 310
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLG+CR+H N KIG+ A F LDP
Sbjct: 311 AVWGALLGSCRMHKNAKIGQFAADHVFELDP 341
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+R+F K+VV+W+ MI +A HG EAL F + + P+ +T++ L
Sbjct: 384 LDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFD-DMRLAGMVPDGITYIGALT 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+G ++EG +F+ M + LEHY VDLL E +
Sbjct: 443 ACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDA 502
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+GACR+H N +I E+ AK L+P N Y L
Sbjct: 503 VIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLL 542
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + +NVV W+ M++ +A +GQ A + F ++ + N V++ ++LF
Sbjct: 190 VDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVM-----PERNEVSWTAMLF 244
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G IE+ ++F+ M
Sbjct: 245 GYIQAGRIEDAEELFNAM 262
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+ ++V+ W+ MI +A HG EAL+ F L+ C + +P+ +TF+S+L AC+++GLIEEG
Sbjct: 479 LQRDVISWNAMIGGYAYHGFATEALQLFDLMKQC-NVQPSYITFISVLNACAHAGLIEEG 537
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEPYVWGALLGACR 116
+ F+ MV+ + +EHY VD++ E + VWGALLGAC+
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACK 597
Query: 117 IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+H+NV++ A+ L P++ A Y L
Sbjct: 598 VHNNVEMARAAAEALMKLQPESSAPYVLL 626
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV 42
MD AE +F + ++NVV W+ M++ + ++G +A+E F L+
Sbjct: 168 MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K++V W+ MI+ + + + A+ F L + KP+ T SIL AC
Sbjct: 370 AHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIF-LQMQLEGKKPDRHTLSSILSAC- 427
Query: 64 YSGLIE--EGIKVFDIMVHDFQLDLNLEHYGITV 95
+GL++ G ++ ++ F DL + + +T+
Sbjct: 428 -AGLVDLVLGTQIHQLVTKAFIADLPINNSLVTM 460
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F +++K++V W+ M+ + A +G +EA+ F + S N +TFL IL
Sbjct: 304 MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE-EMRKSGIYLNQITFLCILT 362
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG FD M+ ++ L+ +EHY VDLL E
Sbjct: 363 ACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTA 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALL ACR+H N K+G+ A F LDP
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFQLDP 452
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+R F + +KNV+ W+ +I+ +A HG A+ + Y + KPN+VTFLS+LF
Sbjct: 506 IEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAV-SLYKKMESKGFKPNDVTFLSLLF 564
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY------------ 106
ACS++GL EG + F+ MV+ + + EHY VDL A E Y
Sbjct: 565 ACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNA 624
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGA I+ + +G+ A + F++ P+N Y L
Sbjct: 625 SLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVL 664
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ +++VV W+ M++ ++ +G+ +A F + HC K N T+ S L AC+
Sbjct: 205 ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV-KANQFTYGSALRACT 263
Query: 64 YSGLIEEGIKV 74
++ GI+V
Sbjct: 264 SLRCLDMGIQV 274
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + ++F + ++VV W+ MIA + IHG +EA +L + P++VTF+ ++
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA-TTLFLGMKNQGFAPDDVTFICLIA 517
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG FD M H + + +EHY VDLLA G + +
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ +G+ V++ L P+ + L
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ M+A +A HG A+ + +PN T +S+L +
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYV-WGALLGACRIHHNVK 122
G + +G +H + L LE V L+ T + Y L+ ACR+ H +
Sbjct: 214 QHGALFQGTS-----IHAYCLRACLEQNEEQV-LIGTALLDMYAKCKQLVYACRVFHGMP 267
Query: 123 I 123
+
Sbjct: 268 V 268
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +K V +W+ MI+ +AIHG+ REALE +++ + + +PN +TF IL
Sbjct: 253 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALE-WFMKMQTAGVEPNQMTFTGILT 311
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL+ E +F+ M ++EHYG VDLL E P
Sbjct: 312 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 371
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC IH N+++G+ + K +DP + Y L
Sbjct: 372 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHL 411
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 16/146 (10%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
+VV WS +I+SHA HG R+AL+ F ++ + PN +TFL +L ACS+ GL++EG++
Sbjct: 490 DVVSWSAIISSHAQHGCARQALQFFNEMVG-AKVVPNEITFLGVLTACSHGGLVDEGLRY 548
Query: 75 FDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIHH 119
++IM ++ L ++H VDLL EP VW +LLG+CRIH
Sbjct: 549 YEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHR 608
Query: 120 NVKIGELVAKDPFHLDPKNDAYYTSL 145
+++ G+LVA L P + Y +L
Sbjct: 609 DMERGQLVADRIMELQPASSGCYVNL 634
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIA-----SHAIHGQE-REALEAFYLVIHCSDGKPNNVT 54
+ +A +F ++D NVV+++ MIA A+H + REAL + Y + +P T
Sbjct: 268 LSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREAL-SLYSELQSRGMEPTEFT 326
Query: 55 FLSILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
F S++ AC+ +G IE G ++ ++ H FQ D
Sbjct: 327 FSSVIRACNLAGDIEFGKQIHGQVLKHCFQGD 358
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+ + +N V ++ +I +++ GQ E+LE F ++ K + T+ + L AC
Sbjct: 65 QARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAAC 124
Query: 63 SYSGLIEEGIKVFDIMV 79
S +G ++EG V + V
Sbjct: 125 SRAGRLKEGKVVHALAV 141
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + ++F + ++VV W+ MIA + IHG +EA +L + P++VTF+ ++
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA-TTLFLGMKNQGFAPDDVTFICLIA 517
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG FD M H + + +EHY VDLLA G + +
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH N+ +G+ V++ L P+ + L
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ M+A +A HG A+ + +PN T +S+L +
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYV-WGALLGACRIHHNVK 122
G + +G +H + L LE V L+ T + Y L+ ACR+ H +
Sbjct: 214 QHGALFQGTS-----IHAYCLRACLEQNEEQV-LIGTALLDMYAKCKQLVYACRVFHGMP 267
Query: 123 I 123
+
Sbjct: 268 V 268
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++VV W+ MI+++ G+ +A+ A + + S P+++ F++ L
Sbjct: 361 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV-ALFSKMQDSGLVPDSIAFVTTLA 419
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG F +M +++ LEH VDLL E
Sbjct: 420 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNE 479
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H N IG L A F L P+ YY L
Sbjct: 480 RVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLL 519
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I ++NV+I + MI S+ +G RE ++ F + C KP++ TF +L ACS
Sbjct: 94 ARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCH-VKPDHYTFPCVLKACS 152
Query: 64 YSGLIEEGIKV 74
SG I G K+
Sbjct: 153 CSGNIVIGKKI 163
>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Glycine max]
Length = 750
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + +F +++K+V+ W+ MI+ + ++G ALE F + S+ PN +TFLS+L
Sbjct: 558 LQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEE-SNVMPNGITFLSLLS 616
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----TGETEPYV--------- 107
AC+++GL+EEG +F M + ++ NL+HY VDLL E E V
Sbjct: 617 ACAHAGLVEEGKYMFARM-KSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDG 675
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALLG C+ H+ +++G +AK L+P+ND YY
Sbjct: 676 GVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGYY 712
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A RIF + +VV W+ +I+SH Q EA+ F ++ D KPN T + +L
Sbjct: 458 MTFAWRIFN-TSETDVVSWNTLISSHVHIKQHEEAVNLFSKMVR-EDQKPNTATLVVVLS 515
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
ACS+ +E+G +V +++ LNL +D+ A
Sbjct: 516 ACSHLASLEKGERV-HCYINESGFTLNLPLGTALIDMYA 553
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV--IHCSDGKPNNVTFLSI 58
M+ A ++F I ++VV W+ +I H +G+ + L V + D KPN T+
Sbjct: 154 MELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAKTWEGG 213
Query: 59 LFACSYSGLIEEGIKVFDIMVHD 81
AC G + EG + ++V +
Sbjct: 214 FLACGNLGAVSEGSCLHGVVVKN 236
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + RIF + +++V W+ MI+ + +HG +A+ F KPN++TF ++L
Sbjct: 651 IQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ-FRTMGLKPNHITFTNLLS 709
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGLIEEG K F +M ++ +D +E Y VDLL+ E P+
Sbjct: 710 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 769
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH N + E A+ F L+P++ Y
Sbjct: 770 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNY 806
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + ++NV W+ ++ + G E ++ FYL+++ +P++ F +
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKVFK 198
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS G V+D M+
Sbjct: 199 ACSELKNYRVGKDVYDYML 217
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A R F I K+V +W+ M++ + G+ ++AL+ + S KP+ VT+ +I+
Sbjct: 241 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCIS-DMKLSGVKPDQVTWNAIIS 299
Query: 61 ACSYSGLIEEGIKVFDIM--VHDFQ 83
+ SG EE K F M + DF+
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFK 324
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 2 DDAERIF---GGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++A + F GG+ D NVV W+ +IA +G + EAL F ++ KPN++T
Sbjct: 308 EEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV-LEGVKPNSITIA 366
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
S + AC+ L+ G ++ + +LD +L
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDL 398
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++VV+W+ +I++ A G+ AL+ ++ S+ + N VT +S L
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALD-LLREMNLSNVEVNTVTMVSALP 608
Query: 61 ACSYSGLIEEGIKVFDIMVH------DFQLDLNLEHYG 92
ACS + +G ++ ++ +F L+ ++ YG
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 646
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 16/155 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A RIF + ++ V W+GM+ ++A HG+ E L+ + K N +TF+S+L
Sbjct: 615 MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK-LIRKMEQEGVKLNGITFVSVLS 673
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
+CS++GLI EG + F + HD +++ EHYG VDLL E E Y+
Sbjct: 674 SCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGI 733
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
W +LLGACR+ ++ G+L A LDP N +
Sbjct: 734 VTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSS 768
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE I + ++ + W+ +I +A+HG+ REALEA Y + + VTF+S+L
Sbjct: 514 LDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEA-YQKLQLEAIPVDKVTFISVLN 572
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
AC+ S + EG M+H ++ L+ I + L ++ G++ A RI +
Sbjct: 573 ACTSSTSLAEG-----KMIHSNAVECGLDSDVIVKNALTNMYSK---CGSMENARRIFDS 624
Query: 121 VKIGELVA 128
+ I V+
Sbjct: 625 MPIRSAVS 632
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
+DA ++FG + N++ WS +I + A HG EAL F ++ +G PN VTF+S+L
Sbjct: 313 EDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ--EGILPNRVTFISLLN 370
Query: 61 ACSYSGLIEE 70
+ +EE
Sbjct: 371 GFTTPSGLEE 380
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F G+ ++V W+ MI++++I + EA F + + + + VTFLSIL
Sbjct: 211 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGE-RCDRVTFLSILD 269
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDL 86
AC ++ G V + I F+LDL
Sbjct: 270 ACVNPETLQHGKHVRESISETSFELDL 296
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA FG I +NVV W+ MI++++ + +EAL F+ ++ PN +T +++L
Sbjct: 8 LGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAML-LEGVAPNAITLVAVLN 66
Query: 61 ACSYSGLIEEGIKVFDIMVHD--FQLDLN----LEHYGITVDLL-------ATGETEPYV 107
+C + +GI V + + FQ L L YG LL E
Sbjct: 67 SCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVT 126
Query: 108 WGALLG 113
W A+LG
Sbjct: 127 WNAMLG 132
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D+A R+F G+ KN V W+ MI++ A HGQ +EAL F +++ PN++TF+ +L
Sbjct: 380 LDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVL 439
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC ++GL++EG ++F +M F L +EHY VDL + + +
Sbjct: 440 SACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPD 499
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ GALLGAC+ N+ I E V K L+P N Y
Sbjct: 500 EVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNY 537
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF + K+ V W+ MI +A +G EA++ F + S P+ +T + IL AC+
Sbjct: 282 ARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ-DMRMSSTAPDQITLIGILSACA 340
Query: 64 YSGLIEEGIKV 74
G ++ G +V
Sbjct: 341 SIGALDLGKQV 351
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F I K++V W+ MI+ ++ EA+ F ++ + +PN ++ +S+L
Sbjct: 178 MGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMME-AGFQPNEMSLVSVLG 236
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC G ++ G V + +V + ++ LN
Sbjct: 237 ACGELGDLKLGTWVEEFVVEN-KMTLN 262
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +R+F + ++V+ W+ +I+ + +HG ++A++ F +I+ P+ +TF+++L
Sbjct: 333 ISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMIN-RGVSPSYITFITVLC 391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EE +F+ M++ +++ +EHY VD+L + P
Sbjct: 392 ACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGP 451
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLG+CRIH NV++ E + F L+PKN Y L
Sbjct: 452 TVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLL 491
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFAC 62
A +FG + DKN+V WS MIA +A + +ALE F +++ D PN +T +S+L AC
Sbjct: 233 ASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQAC 292
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
+ +E G +VH + L L+ ++ L T
Sbjct: 293 ASLAALEHG-----KLVHAYVLRRGLDSTLPVLNTLIT 325
>gi|449444397|ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510-like [Cucumis sativus]
Length = 391
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +++VV WS +I++HA+HG+ AL F + C +P+ +TF+ +L ACS
Sbjct: 198 AHNVFDNMTERDVVAWSSLISAHALHGEASTALNIFQQMESCKV-QPDEITFIGVLKACS 256
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL E + F+ M D+ L + +HY VD+L+ W
Sbjct: 257 HVGLANEALDYFNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAYDIIREMPVRVTAKAW 316
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACRI+ +++ E+ K F ++P+N A Y L
Sbjct: 317 GALLGACRIYGELELAEIAGKALFEIEPENAANYVLL 353
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ F I KNVV W+ +I +A +G+ EAL+A Y ++ + KP+NVT L +LF
Sbjct: 226 LEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDA-YRMMRATGLKPDNVTLLGLLF 284
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EPYV 107
C+++GL++EG +F + L EHY VDLL+ + EP +
Sbjct: 285 GCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGI 344
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W ALLG C+IH N K+ E VAK LDPK+ + Y
Sbjct: 345 GFWKALLGGCQIHWNSKLAESVAKRIRALDPKDTSSY 381
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
D+A+R+F + ++NVV W+ MI ++ G EA+ F + C G PN TF +L
Sbjct: 126 DEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEM--CRGGVSPNESTFPCVLT 183
Query: 61 ACSYSGLIEEGIKV 74
+ + +G + G +
Sbjct: 184 SVASAGTLGVGRSI 197
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 18/152 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F I +K+++ W+ M+A + IHG A+ F +I DG +P+ VTF+++L ACS++
Sbjct: 1306 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK--DGFEPDGVTFVAVLSACSHA 1363
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGA 110
GL+ EG ++FD M+ +F+++ +EHY VDLL E VWGA
Sbjct: 1364 GLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGA 1423
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
LL +CR+H N ++ E A F+L+ + Y
Sbjct: 1424 LLNSCRMHKNTEVAEETASQIFNLNSEIAGSY 1455
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ NVV WS +I A GQ EALE F + + K N+VT S+L C+
Sbjct: 1209 MVRPNVVSWSAVIGGFASKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCA 1260
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + RIF + +++V W+ MI+ + +HG +A+ F KPN++TF ++L
Sbjct: 408 IQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ-FRTMGLKPNHITFTNLLS 466
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGLIEEG K F +M ++ +D +E Y VDLL+ E P+
Sbjct: 467 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 526
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH N + E A+ F L+P++ Y
Sbjct: 527 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNY 563
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A R F I K+V +W+ M++ + G+ ++AL F ++ KPN++T S +
Sbjct: 162 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVS 220
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
AC+ L+ G ++ + +LD +L
Sbjct: 221 ACTNLSLLRHGREIHGYCIKVEELDSDL 248
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + ++NV W+ ++ + G E ++ FYL+++ +P++ F +
Sbjct: 61 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKVFK 119
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS G V+D M+
Sbjct: 120 ACSELKNYRVGKDVYDYML 138
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + ++VV+W+ +I++ A G+ AL+ ++ S+ + N VT +S L
Sbjct: 307 MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR-EMNLSNVEVNTVTMVSALP 365
Query: 61 ACSYSGLIEEGIKVFDIMVH------DFQLDLNLEHYG 92
ACS + +G ++ ++ +F L+ ++ YG
Sbjct: 366 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 403
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F I K+++ W+ MIA + +HG EA+ F + + +P+ +F IL ACS
Sbjct: 826 AQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN-EMRIAGIEPDESSFSVILNACS 884
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YVW 108
+SGL+ EG K F+ M ++ ++ LEHY VDLLA E+ P +W
Sbjct: 885 HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 944
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G LL CRIHH+VK+ E VA+ F L+P N YY L
Sbjct: 945 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 981
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F I K++V W+ MI ++ + EALE F + KP+++T +L
Sbjct: 723 VEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ--KQFKPDDITMACVLP 780
Query: 61 ACSYSGLIEEGIKV 74
AC+ +++G ++
Sbjct: 781 ACAGLAALDKGREI 794
>gi|413953445|gb|AFW86094.1| hypothetical protein ZEAMMB73_140838 [Zea mays]
Length = 508
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 17/153 (11%)
Query: 4 AERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A ++F G+ +++ W+ MI + A+HG EAL F+ + + KP+ +TF+ ++ AC
Sbjct: 273 AWKVFRGMGTRRDLCSWNSMIMAFAVHGLWTEALALFH-KLRMTGAKPDGITFVGVILAC 331
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GL++EG +F+ M +F L +EHYG VDLL E + +
Sbjct: 332 THGGLVDEGKLLFNSMRGEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVI 391
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
WGALLGAC H N ++ E+ + HL+P N A
Sbjct: 392 WGALLGACSFHGNFELAEIAVEKLMHLEPHNTA 424
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
DAER+F G+ D++VV W+ M++ +A +G+ EA+ F + + +PN +T S+
Sbjct: 170 DAERLFAGMPDRSVVSWTAMVSGYAQNGRHEEAVRTFLDMWDGAGVRPNELTVSSV 225
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F I ++N W+ MI A+HG +EAL+ F+ + PN++TF+ +L AC
Sbjct: 281 AQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFW-KLEKEQIVPNDITFVGVLSACC 339
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV----W------- 108
++GL+ G K+F +M + ++ +EHYG VDLL G E E + W
Sbjct: 340 HAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADVVIL 399
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG+C+ H N++I E V K+ L+P N Y L
Sbjct: 400 GALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVL 436
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++++ IW+ MI+ +A + EALE F +I +PN T S+L AC
Sbjct: 179 NARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELFDQMI-VEGLEPNGATLASVLSAC 237
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVK 122
+ SG ++ G + +H F +E GI V G +LG +H K
Sbjct: 238 AQSGCLDLGER-----IHVF-----MEEKGIEV-------------GVILGTALVHMYAK 274
Query: 123 IGE-LVAKDPF-HLDPKNDAYYTSL 145
G L+A+ F + +N A + ++
Sbjct: 275 NGAILMAQKLFDTISERNTATWNAM 299
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + N +W+ +I +HA EAL Y+ + D P TF +L ACS
Sbjct: 79 ALRLFNNTQEPNSFMWNTLIRAHASSLNPSEAL-LLYVDMRRLDVIPGKHTFPFLLKACS 137
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
++ I+V V F LDLNL
Sbjct: 138 NFQSLQSCIQV-HTHVLKFGLDLNL 161
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + K VV W+ MI +A+HG EAL+ F + + KP+++TF+ +L ACS
Sbjct: 331 ARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA--KPDHITFVGVLSACS 388
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGET-EPY-------------VW 108
+ GL+EEG F+ M+ D+++D ++HY VDLL +G E Y VW
Sbjct: 389 HGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL +C+IH NV++GE+ + L+P + Y L
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVIL 485
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 16/156 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AI G +EA + F + + +PN++TF+++L ACS
Sbjct: 247 ATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKE-AGVEPNDITFVAMLSACS 305
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHYG +DLLA E P
Sbjct: 306 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCAL 365
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTS 144
GALLG CRIH N ++GE+V K +L P S
Sbjct: 366 GALLGGCRIHGNFELGEMVGKRLINLQPCQSGRLKS 401
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA +F + ++VV W+ M+A +A G+ EAL A + + KP+ T +S+L
Sbjct: 143 VEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL-ALFDQMXAVGVKPSEATVVSLLS 201
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLN 87
AC++ G +++G+ + ++D ++++N
Sbjct: 202 ACAHLGALDKGLHLH-TYINDNRIEVN 227
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +NVV W+ MI +A+HG A++ F + C KP+ VTF +L ACS
Sbjct: 343 ARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQ-KPDLVTFTCVLGACS 401
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+GL EEG + F+ M + +EHY V LL E + +W
Sbjct: 402 QAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIW 461
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LLG+CR++ NV + E+ A+ F L+P N Y L
Sbjct: 462 GSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLL 498
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F +I+K+V+ WS MI A HG+ A+ F + + PN VTF+ +L
Sbjct: 289 IDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFE-DMQKAGVTPNGVTFVGVLS 347
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
AC+++GL EG++ FD+M D+ L+ +EHYG VDLL +G+ E
Sbjct: 348 ACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDS 407
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LL +CRIHHN++I + + L+P+ Y L
Sbjct: 408 RTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLL 447
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 16/142 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ +KNVV WS MI+ A++G REA+EAF ++ P++ TF +L
Sbjct: 258 LDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGV-LPDDQTFTGVLS 316
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSYSG+++EG+ F M +F + N+ HYG VDLL + +
Sbjct: 317 ACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDS 376
Query: 106 YVWGALLGACRIHHNVKIGELV 127
+W LLGACRIH +V +GE V
Sbjct: 377 TMWRTLLGACRIHGHVTLGERV 398
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS-DGKPNNVTFLSILFA 61
DA ++F + ++ V W+ MI+ + + R+AL F ++ S +P++VT L +L A
Sbjct: 157 DACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQA 216
Query: 62 CSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
C++ +E G ++ IM ++ LNL
Sbjct: 217 CAHLNALEFGERIHGYIMERGYRDALNL 244
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN++ W+ MIA + +HG ++A+ A + + S +P+ +F +IL+AC
Sbjct: 766 ARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAV-ALFEQMRGSGVEPDTASFSAILYACC 824
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYVW 108
+SGL EG K F+ M +++++ L+HY VDLL+ TG E + +W
Sbjct: 825 HSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIW 884
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL CRIH +VK+ E VA F L+P+N YY L
Sbjct: 885 VSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLL 921
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA IF D+NVV+W+ MI+ A+HGQ REA+ F L+I+ +G PN V+F+ +L
Sbjct: 687 LNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMIN--EGITPNEVSFVGVL 744
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY--------- 106
ACS++GL+EEG K F +M + + EH+ VDL E + +
Sbjct: 745 TACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKL 804
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW + L +CR+H N+++G V K L+P + Y
Sbjct: 805 SSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPY 842
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
V WS M++ + +G+ +AL+ F +I CS + + T S++ AC+ +G++E G +V
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFMI-CSQVEVDKFTLTSVVSACASAGVLELGRQV 658
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D ++F + ++ V W+ MI +A +G+ ++AL F ++ CS+ +P++VT + +L
Sbjct: 438 ISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERML-CSNERPDSVTMIGVLS 496
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL++EG + F M D + +HY +DLL E +
Sbjct: 497 ACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDA 556
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LLGACR+H N+ +GE A F LDP N Y L
Sbjct: 557 VLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLL 596
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
++A+++F + ++N+V W+ +I + +G EAL F ++ DG P+ VT S++
Sbjct: 199 EEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMM--KDGFVPDEVTLASVMS 256
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
AC+ EG +V MV + ++ VD+ A
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYA 295
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA+ +F +++KNVV W+ +IA++A + +E EAL F + S P + T+ ++L AC
Sbjct: 333 DAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVW-PTHYTYGNVLNAC 391
Query: 63 S 63
+
Sbjct: 392 A 392
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA +FG I D + ++ ++A+ A HG+ +AL F +H D N +F S L A
Sbjct: 98 DDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALR-FLAAMHADDFVLNAYSFASALSA 156
Query: 62 CSYSGLIEEGIKV 74
C+ G +V
Sbjct: 157 CASEKASRTGEQV 169
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 22/156 (14%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY---LVIHCSDGKPNNVTFLSIL 59
DA ++F + D +V+ W+ MI+ +A HG ++ALE F LV+ PN+ TFL +L
Sbjct: 521 DAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLP----NPNSATFLCLL 576
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
FACS+ GL++EG++ F +M + L +EHY VD+L E +
Sbjct: 577 FACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPD 636
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
VW LLGACR+H N+++ ++ A+ +P + A
Sbjct: 637 EKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFA 672
>gi|357152420|ref|XP_003576113.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Brachypodium distachyon]
Length = 473
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD +R F +++K V W+ ++++ A HG+E E L F ++I PN +TFLSIL
Sbjct: 273 MDCCKRAFQAVLEKEVCTWNALLSALANHGKETETLVKFNMMI-VGGFLPNQITFLSILT 331
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
C+ +GL+E G+ F+ MV ++++ + HYG VDLL E P+
Sbjct: 332 GCARAGLVEIGLYWFEAMVTEYKVTPVMSHYGCVVDLLGRAGRFIEAIEIIERMPFPPDA 391
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC++H NV++ + + L P+ Y ++
Sbjct: 392 SVWGALLGACKLHGNVELVAEIERKLVALGPQQSDRYVAI 431
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE++F + +N+V W+ MI +A G AL F +I + PN +T +++L
Sbjct: 372 IQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLT 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------ 106
ACS GL +EG ++F M F ++ +EHY VDLL A E + Y
Sbjct: 432 ACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSI 491
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLG C++H ++G + A+ F LDP++ + L
Sbjct: 492 SVWGALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLL 531
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++NVV W+ ++ + + G+ E +EA Y + + G PN V+ + AC+
Sbjct: 173 ARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEA-YFGLRGAGGMPNVVSVCAFFNACA 231
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + ++V+ W+ MI + HG + ++E F + + KPN++TFL L ACS
Sbjct: 387 ARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTI-KPNDITFLCALSACS 445
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW--------------- 108
+SGL+EEG+ F+ M D+ ++ ++HYG VDLL W
Sbjct: 446 HSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH NV +GE A + F L+P + Y+ L
Sbjct: 506 GAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLL 542
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + +K +V W+ MI +A +G EAL AF + + KP++ T +S++
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAF-CEMQSRNIKPDSFTMVSVIP 341
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
A + + + + +++ F LD N+ VD+ A
Sbjct: 342 ALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYA 379
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
++DA +F + ++++V W+ MI+ +A +G + AL LV+ S+ +P+++T +SI
Sbjct: 81 INDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVAL---MLVLRMSEEGHRPDSITIVSI 137
Query: 59 LFACSYSGLIEEGIKV 74
L A + + L+ G+ V
Sbjct: 138 LPAVADTRLLRIGMAV 153
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A IF G+ + VV W+ MI + G A+ F ++ +G +P NVT + L AC
Sbjct: 185 ARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKML--DEGVQPTNVTVMGALHAC 242
Query: 63 SYSGLIEEGIKVFDIMVHDFQLD 85
+ G +E G K +V +LD
Sbjct: 243 ADLGDLERG-KFVHKLVDQLKLD 264
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F +I+ NVV+W+ MI+ + +HG EA+E F+ + PN+VTF+++L AC+
Sbjct: 263 ARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHR-MKARGVVPNSVTFVAVLSACA 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPYV 107
++GLI+EG VF M ++ + +EH+ VD+ G E P V
Sbjct: 322 HAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAV 381
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W A+LGAC++H N +G VA++ + +P+N +Y L
Sbjct: 382 WTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLL 419
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++V W+ MI+ + +G EA+E F + S +P++ TF+S+L ACS
Sbjct: 162 ARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE-SRVEPDSATFVSVLSACS 220
Query: 64 YSGLIEEGIKVFDIMV 79
G ++ G + D +V
Sbjct: 221 QLGSLDFGCWLHDCIV 236
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F I ++N W+ MI A+HG +EAL+ F+ + PN++TF+ +L AC
Sbjct: 283 AQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFW-KLEKEQIVPNDITFVGVLSACC 341
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV----W------- 108
++GL+ G K+F +M + ++ +EHYG VDLL G E E + W
Sbjct: 342 HAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADVVIL 401
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG+C+ H N++I E V K+ L+P N Y L
Sbjct: 402 GALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVL 438
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++++ IW+ MI+ +A + EALE F +I +PN T S+L AC
Sbjct: 181 NARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELFDQMI-VEGLEPNGATLASVLSAC 239
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVK 122
+ SG ++ G + +H F +E GI V G +LG +H K
Sbjct: 240 AQSGCLDLGER-----IHVF-----MEEKGIEV-------------GVILGTALVHMYAK 276
Query: 123 IGE-LVAKDPF-HLDPKNDAYYTSL 145
G L+A+ F + +N A + ++
Sbjct: 277 NGAILMAQKLFDXISERNTATWNAM 301
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + N +W+ +I +HA EAL Y+ + D P TF +L ACS
Sbjct: 81 ALRLFNNTQEPNSFMWNTLIRAHASSLNPSEAL-LLYVDMRRLDVIPGKHTFPFLLKACS 139
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
++ I+V V F LDLNL
Sbjct: 140 NFQSLQSCIQV-HTHVLKFGLDLNL 163
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
++VV+W+ MI++ A +G +A++ F ++ S KP+ +TF+ IL ACS+SGL++EG++
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVE-SGLKPDRITFIVILSACSHSGLVQEGLR 450
Query: 74 VFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIH 118
F M +D + + EHY +DLL + + VW ALLG CRIH
Sbjct: 451 FFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+N+++G VA+ L P++ A Y SL
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSL 537
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + +KN V WS +I+ +A + EAL+ F ++ P TF S L
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGIN-PEQYTFSSCLC 335
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
AC+ ++ G +V ++ +
Sbjct: 336 ACASIAALKHGKQVHGYLIRTY 357
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F +DK+V +W+ MI+ A +G EALE F+ + PN VT L++L ACS
Sbjct: 410 AYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFW-KMQTEVVAPNGVTLLAVLSACS 468
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+SGL++EG K+FD M + ++ +EH+G VDLLA + P +W
Sbjct: 469 HSGLLDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLARSGRLIDALALARRMQMRPSRSIW 528
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G++L A N+++ E+ +K+ LDP + Y L
Sbjct: 529 GSILNASLAGQNIEVAEIASKELLRLDPAEEGGYVLL 565
>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D R F + ++VV WS +I+SHA HG R+AL F +++ + PN VTFL++L
Sbjct: 465 VDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMN-AKVAPNEVTFLNVLT 523
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPY---------- 106
ACS+ GL+++G++ ++IM +++ L ++H VDLL + E +
Sbjct: 524 ACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDA 583
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LL +CRIH +++ G+LVA L+P + A Y L
Sbjct: 584 VVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVIL 623
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIAS----HAIHGQE--REALEAFYLVIHCSDGKPNNVT 54
+ +A +F + D NV++++ MIA A G+E REAL + Y + +P+ T
Sbjct: 257 LTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREAL-SLYSEMQSRGMQPSEFT 315
Query: 55 FLSILFACSYSGLIEEGIKVF-DIMVHDFQLD 85
F SIL AC+ +G G ++ ++ H F D
Sbjct: 316 FSSILRACNLAGEFGFGKQIHGQVLKHSFHDD 347
>gi|414873985|tpg|DAA52542.1| TPA: hypothetical protein ZEAMMB73_134156 [Zea mays]
Length = 466
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 89/157 (56%), Gaps = 15/157 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F + D++VV+WS +++++A HG+ A+ F + D +P+++ FLS++ AC+
Sbjct: 246 AQRVFDQVHDRDVVVWSSLVSAYAFHGRAEVAMSLFQHMEDQDDVRPDSIMFLSLMAACA 305
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+SG ++ ++ FD++ + ++ +HY VD+L T P W
Sbjct: 306 HSGHADDALQYFDVLTRRYGVEACGDHYSCLVDVLGRAGRLHQAYELLRTMPVKVTAKAW 365
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR H +V++ E+ + F ++P+N + SL
Sbjct: 366 GALLAACRKHGDVRLAEVAGRALFEIEPENAGNFVSL 402
>gi|414873984|tpg|DAA52541.1| TPA: hypothetical protein ZEAMMB73_134156 [Zea mays]
Length = 443
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 89/157 (56%), Gaps = 15/157 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F + D++VV+WS +++++A HG+ A+ F + D +P+++ FLS++ AC+
Sbjct: 246 AQRVFDQVHDRDVVVWSSLVSAYAFHGRAEVAMSLFQHMEDQDDVRPDSIMFLSLMAACA 305
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+SG ++ ++ FD++ + ++ +HY VD+L T P W
Sbjct: 306 HSGHADDALQYFDVLTRRYGVEACGDHYSCLVDVLGRAGRLHQAYELLRTMPVKVTAKAW 365
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACR H +V++ E+ + F ++P+N + SL
Sbjct: 366 GALLAACRKHGDVRLAEVAGRALFEIEPENAGNFVSL 402
>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
gi|219885333|gb|ACL53041.1| unknown [Zea mays]
gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
Length = 528
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F G+ ++VV +S MI +HG+ EA+ + + + PN VTF+ +L
Sbjct: 333 MDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAV-GLFKEMSKARIDPNAVTFVGLLS 391
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
A S++GL+EE F M ++++ ++EHY I VD+L G+ E
Sbjct: 392 AYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLEEAFQLVMQIPVCPDA 451
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACR+H+N+++GE+VA F L+P+ YY L
Sbjct: 452 SVWGALLLACRLHNNIELGEVVASKCFELEPQESGYYILL 491
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + K++ W+ MI+ +A +G REAL F ++ PN TF S++ AC
Sbjct: 233 AANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISAC 292
Query: 63 SYSGLIEEGIKVFDIM 78
S G + G+ V + M
Sbjct: 293 SQLGDLRFGLWVENFM 308
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF G+ +KNVV W+ +I + A+HG EA+E F + S P+ +TF +L
Sbjct: 421 LQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFK-SMQASGLYPDEITFTGLLS 479
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL++ G FDIM+ F++ +EHY VDLL G + +
Sbjct: 480 ACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDV 539
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRI+ N++I + + K L N Y L
Sbjct: 540 VVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLL 579
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A +IF + KNVV W+ +I GQ EA+E F+ + C G P++ T +SIL
Sbjct: 320 VENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRM--CISGVMPDDATLVSIL 377
Query: 60 FACSYSG 66
CS +G
Sbjct: 378 SCCSNTG 384
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + +K+V +W+ MI A HG +AL+ FY + PN VTF+++L
Sbjct: 413 IKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYV--MPNQVTFVAVLT 470
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SG + +G+++F+ M + ++ +EHYG VDLL E P
Sbjct: 471 ACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSR 530
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+L ACR + N++I E+ K+ L+P+ + Y L
Sbjct: 531 SIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLL 570
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+R F + +KNV+ W+ +I+ +A HG A+ + Y + KPN+VTFLS+LF
Sbjct: 385 IEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAV-SLYKKMESKGFKPNDVTFLSLLF 443
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY------------ 106
ACS++GL EG + F+ MV+ + + EHY VDL A E Y
Sbjct: 444 ACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNA 503
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGA I+ + +G+ A + F++ P+N Y L
Sbjct: 504 SLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVL 543
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D ++ I+++ + W+ +I++ A HG ++A E F+ ++ KP++VTF+S+L
Sbjct: 1403 MHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP-KPDHVTFVSLLS 1461
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV--------- 107
AC++ GL++EG+ +D M +F + +EH +DLL E ++
Sbjct: 1462 ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPND 1521
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W +LL ACRIH N+++ A+ LDP +D+ Y
Sbjct: 1522 LAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAY 1558
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ +++VV W+ M++ ++ +G+ +A F + HC K N T+ S L AC+
Sbjct: 84 ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV-KANQFTYGSALRACT 142
Query: 64 YSGLIEEGIKV 74
++ GI+V
Sbjct: 143 SLRCLDMGIQV 153
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSIL 59
M +A+++ + + V W+ +I HA + + EA++A+ L+ G P N +T +S+L
Sbjct: 1200 MMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE--KGIPANYITMVSVL 1257
Query: 60 FACSYS-GLIEEGIKVFD-IMVHDFQLDLNLEHYGITV-----DLLAT-------GETEP 105
ACS L++ G+ + I++ F+ D +++ IT+ DL ++ G P
Sbjct: 1258 GACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP 1317
Query: 106 YVWGALLGACRIHH 119
W A++ A HH
Sbjct: 1318 ITWNAMVAA-NAHH 1330
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILF 60
+DAE +F + +++++ W+ M+A + G+ + L+ ++ GK N+VTF S L
Sbjct: 1100 EDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQM--GKVMNHVTFASALA 1157
Query: 61 ACSYSGLIEEGIKVFDIMV----HDFQLDLN-----LEHYGITVDLLATGETEPY----V 107
ACS + E V +++ HDF + N G+ ++ +T P
Sbjct: 1158 ACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVT 1217
Query: 108 WGALLGA 114
W AL+G
Sbjct: 1218 WNALIGG 1224
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV------- 53
++ + IF G+ +K+ + W+ M+A++A HG EAL+ F G+ NV
Sbjct: 1302 LNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIF--------GEMRNVGVNLDQF 1353
Query: 54 TFLSILFACSYSGLIEEGIKVFDIMVH-DFQLDLNLEH 90
+F L A + ++EEG ++ +++ F+ DL++ +
Sbjct: 1354 SFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN 1391
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +FG +++++VV W+ MI +A+ G ++ F ++ P+ T S+L
Sbjct: 182 MEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR-GGLVPDCYTLGSVLR 240
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98
A + E G + +H L Y I LL
Sbjct: 241 ASA-----EGGGLIIANQIHGIITQLGYGSYDIVTGLL 273
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 15/158 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + +KN+V W+ +IA++ HG+ +++L F+ ++ S +P+ +TFL I+
Sbjct: 589 LKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIIS 648
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY---- 106
C + G ++EG++ F M D+ + EHY VDL T ++ P+
Sbjct: 649 LCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDA 708
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VWG LLGA R+H NV++ ++ + LDP N YY
Sbjct: 709 GVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYV 746
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F ++ K+ VIW+ M+ +A G ++ F L + PN VTF +L
Sbjct: 185 IDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSL-MRMDQISPNAVTFDCVLS 243
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ LI+ G+++ ++V
Sbjct: 244 VCASKLLIDLGVQLHGLVV 262
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + +N V W+ M++ + +HG+ +EAL+ F + + P++++FL +L+
Sbjct: 565 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD-KMQKAGFVPDDISFLVLLY 623
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++++G+ FDIM D+ + + +HY +DLLA E
Sbjct: 624 ACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSA 683
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
+W ALL ACR+H NV++ E + +ND YT
Sbjct: 684 AIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYT 721
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I +V+ WS +IA +A G +EAL+ F +I +PN+VT +S+L AC+ G + +G
Sbjct: 356 IPLDVITWSAVIAGYAQRGYGQEALDTFQQMI-LYGSEPNSVTIISLLSACASLGALSQG 414
Query: 72 IKV 74
++
Sbjct: 415 MET 417
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI +A +G +AL+ F +I PN T IL
Sbjct: 461 ARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILM 520
Query: 61 ACSYSGLIEEGIKV 74
AC++ + G ++
Sbjct: 521 ACAHLSSLRMGKQI 534
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
++VV+W+ MI++ A +G +A++ F ++ S KP+ +TF+ IL ACS+SGL++EG++
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVE-SGLKPDRITFIVILSACSHSGLVQEGLR 450
Query: 74 VFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIH 118
F M +D + + EHY +DLL + + VW ALLG CRIH
Sbjct: 451 FFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+N+++G VA+ L P++ A Y SL
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSL 537
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + +KN V WS +I+ +A + EAL+ F ++ P TF S L
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGIN-PEQYTFSSCLC 335
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
AC+ ++ G +V ++ +
Sbjct: 336 ACASIAALKHGKQVHGYLIRTY 357
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +IF + + V+ W+ M+ ++ HG+ E ++ F L+ + KP++VTFL++L
Sbjct: 263 LNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLS 322
Query: 61 ACSYSGLIEEGIKVFDIMVHDF-QLDLNLEHYGITVDLLATG---------------ETE 104
CS+ GL ++G+++FD M++ +++ +EHYG +DLL E
Sbjct: 323 GCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPT 382
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACR+H N IGE V ++P+N Y L
Sbjct: 383 AAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVIL 423
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++NVV W+ MI+ ++ G EAL F ++ SD +PN TF ++L +C+
Sbjct: 64 ARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLR-SDTEPNEFTFATVLSSCT 122
Query: 64 -YSGL 67
+SG
Sbjct: 123 GFSGF 127
>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R F + +KNV+ W+ +I + HG EA+ A + + KPN++TFLS+LF
Sbjct: 352 IKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAI-ALFKKMEYEGLKPNDITFLSLLF 410
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL EG + F+ M+ + + EH+ VDL A G +
Sbjct: 411 ACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNA 470
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGAC I+ N+ + E A F +DP+N Y L
Sbjct: 471 SLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVL 510
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +FG + +++VV W+ +I ++A+ G ++ F ++ P+ TF S+L
Sbjct: 149 MEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQ-EGMSPDLFTFGSVLK 207
Query: 61 ACSYSGLIEEGIKVFDI 77
A SG+ + I+V I
Sbjct: 208 A---SGMASDVIRVCQI 221
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A ++F + ++ VV WS I+ ++ +G ++AL F ++ + K N T+ S+L AC
Sbjct: 50 SARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLR-AGFKANQFTYGSVLRAC 108
Query: 63 SYSGLIEEGIKV 74
+ ++ G+++
Sbjct: 109 TGLRCLQRGMQI 120
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F G+ ++V W+ MI A HG R+A+E F I S+G P NVTF+ +L C
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFI--SEGLSPTNVTFVGVLNGC 390
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S SGL+ EG + F ++V ++++ +EHYG VDLL +P +
Sbjct: 391 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 450
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG +L +C+ H V +G V LDP + YY L
Sbjct: 451 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLL 488
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+++A+++F I K N+ W+ MI A+HG+ +AL+ Y + +P++VTF+ +L
Sbjct: 266 IEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQ-LYDQMLIRKMRPDDVTFVGLL 324
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY----------- 106
AC++ G++ EG ++F+ M FQ+ LEHYG VDLL GE E Y
Sbjct: 325 LACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPD 384
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LLGAC H NV++GE+ A+ F L+P N Y L
Sbjct: 385 SVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVIL 425
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + +NV+ W+ +I+ +A +G+ +ALE F + + KPN V+ S+L
Sbjct: 164 MEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLP 223
Query: 61 ACSYSGLIEEGIKV 74
ACS G ++ G ++
Sbjct: 224 ACSQLGALDIGKRI 237
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F G+ ++V W+ MI A HG R+A+E F I S+G P NVTF+ +L C
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFI--SEGLSPTNVTFVGVLNGC 390
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S SGL+ EG + F ++V ++++ +EHYG VDLL +P +
Sbjct: 391 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 450
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG +L +C+ H V +G V LDP + YY L
Sbjct: 451 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLL 488
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D++ R+F G+ +++V WS MI A HG AL+ F +I D KPN+VTF+ +L
Sbjct: 319 IDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMI-SEDIKPNDVTFIGVLS 377
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ GL++EG F M + + +EHYG VD+L ++ P+
Sbjct: 378 ACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDA 437
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW ALLGACRI+ NV+I E + L+P D Y L
Sbjct: 438 IVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLL 477
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+++F +++++ WS MIA++A Q EAL F+ + ++ P+ VT +S+L AC
Sbjct: 221 AKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFH-EMQLANVLPDKVTMVSVLSACG 279
Query: 64 YSGLIEEGIKVFD-IMVHDFQLDLNL 88
G + G + + I + ++DL L
Sbjct: 280 DVGALGMGKMIHECIERNRIEIDLKL 305
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + K++ W+ MI S A+HG EAL F + DG +PN VTF+ +L AC
Sbjct: 442 AWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIAC 501
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S+ GL++EG F+ MV+++++ +++HYG VDLL+ +T P+ +
Sbjct: 502 SHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVL 561
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+HH+V + E + ++P D Y L
Sbjct: 562 WRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLL 599
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + +++ V W+ MIA + AL A + + ++ + ++T +S+L
Sbjct: 338 IEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARAL-ALFREMEIANVEATDITLISVLG 396
Query: 61 ACSYSGLIEEGIKV 74
AC+ +G +E G K+
Sbjct: 397 ACAETGALEIGRKI 410
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +IF + +++V W+ MIA + IHG +EA A +L + +P++VTF+ ++
Sbjct: 487 IDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEA-TALFLDMKHQACEPDDVTFICLIS 545
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+ EG + F +M H + + +EHY VDLLA G + +
Sbjct: 546 ACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADV 605
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H N+ +G+ V+ L P+ + L
Sbjct: 606 RVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLL 645
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ M+A +A+HG+ + + L+ D PN T +++L +
Sbjct: 183 AATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ--DDHAPNASTLVALLPLLA 240
Query: 64 YSGLIEEGIKV 74
G + +G V
Sbjct: 241 QHGALSQGRAV 251
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + K+ W+ MI+S + G R+A+E F+ ++ S PN+VTF+S+L ACS++G
Sbjct: 308 VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLR-SGILPNSVTFVSVLSACSHAG 366
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVWGAL 111
LI+EG ++FD M + +D LEHYG VDLL G + EP +W +L
Sbjct: 367 LIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSL 426
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L AC H N ++ E+ K+ +P +D Y L
Sbjct: 427 LSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLL 460
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + K+ V W+ +I H Q +ALE F ++ +PN++T + +L
Sbjct: 201 VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKML-LEGHRPNHITIVGVLS 259
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 260 ACADIGALDLG 270
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE++F + +N+V W+ MI +A G AL F +I + PN +T +++L
Sbjct: 374 IEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLT 433
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPY-------------- 106
ACS GL +EG ++F M F ++ +EHY VDLL E
Sbjct: 434 ACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSI 493
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
VWGALLG C++H ++G + A+ F LDP++
Sbjct: 494 SVWGALLGGCKMHGKTELGRIAAEKLFELDPQDS 527
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++NVV W+ ++ + + G+ E +EA Y + + G PN V+ + AC+
Sbjct: 175 ARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEA-YFGLRGAGGMPNVVSVCAFFNACA 233
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F ++ K++ W+ MI A+HG+ A + F + ++ KP+++TF+ +L
Sbjct: 349 IEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSR-MRKNEIKPDDITFVGLLS 407
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS++G+++ G +F M H++++ LEHYG +DLL T E +
Sbjct: 408 ACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDG 467
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL AC++H NV++GE A++ F ++P N Y L
Sbjct: 468 VIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLL 507
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F I K+VV W+ MI+ + G +EALE F ++ ++ +P+ T ++++
Sbjct: 145 IESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK-TNVRPDESTMVTVIS 203
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
A + SG IE G +V I H F +L +
Sbjct: 204 ASARSGSIELGRQVHSWIADHGFGSNLKI 232
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F G+ K+V+ W+ +I + +EAL F ++ S PN+VT LSIL
Sbjct: 246 METACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLR-SGESPNDVTMLSILH 304
Query: 61 ACSYSGLIEEG 71
AC++ G I+ G
Sbjct: 305 ACAHLGAIDIG 315
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F + + NV W+ MI+++ HG ++A+E F + PNNVTF+++L AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSAC 320
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-----------------ATGE-TE 104
+++GL+EEG V+ M ++L +EH+ VD+L ATG+ T
Sbjct: 321 AHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATA 380
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P +W A+LGAC++H N +G +AK L+P N ++ L
Sbjct: 381 PALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVML 421
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A ++F + +K++V W+ +++ +G EA++ FY + S +P++ TF+S+L
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE-SGFEPDSATFVSLLS 216
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC+ +G + G V ++ + LDLN++
Sbjct: 217 ACAQTGAVSLGSWVHQYIISE-GLDLNVK 244
>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 704
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER+F G + + S MI+++ HG ++A+E F +++ +P++VTFL++L+
Sbjct: 391 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLY 449
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGL EEG+ F++M + + +++HY VDLL E E
Sbjct: 450 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 509
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +AK LDP + A Y L
Sbjct: 510 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLL 549
>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
Length = 628
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER+F G + + S MI+++ HG ++A+E F +++ +P++VTFL++L+
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLY 383
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGL EEG+ F++M + + +++HY VDLL E E
Sbjct: 384 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 443
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +AK LDP + A Y L
Sbjct: 444 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLL 483
>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
Length = 708
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER+F G + + S MI+++ HG ++A+E F +++ +P++VTFL++L+
Sbjct: 387 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLY 445
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGL EEG+ F++M + + +++HY VDLL E E
Sbjct: 446 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 505
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +AK LDP + A Y L
Sbjct: 506 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLL 545
>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 646
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER+F G + + S MI+++ HG ++A+E F +++ +P++VTFL++L+
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLY 383
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGL EEG+ F++M + + +++HY VDLL E E
Sbjct: 384 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 443
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +AK LDP + A Y L
Sbjct: 444 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLL 483
>gi|307136045|gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein [Cucumis melo
subsp. melo]
Length = 391
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +++VV WS +I++HA+HG+ AL F + S +P+ +TF+ +L ACS
Sbjct: 198 AHNVFDNMTERDVVAWSSLISAHALHGEASTALNIFQ-QMELSKVQPDAITFIGVLKACS 256
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL +E + F+ M D+ L + +HY VD+L+ W
Sbjct: 257 HVGLADEALDYFNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAHDIIREMPVRVTAKAW 316
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGACRI+ +++ E+ K F ++P+N A Y L
Sbjct: 317 GALLGACRIYGELELAEIAGKALFEIEPENAANYVLL 353
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 17/153 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + +++V W+ M+ + A +G +EA+ A + I + N +TFLS+L
Sbjct: 315 MVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAV-AHFEEIRKYGIQLNQITFLSVLT 373
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG + FD+M D+ ++ ++HY VDLL E
Sbjct: 374 ACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 432
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWGALLGACR+H N KIG+ A F LDP++
Sbjct: 433 AVWGALLGACRMHKNAKIGQYAADHVFELDPED 465
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 16/151 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + KNV+ W+ MI + A+HG + AL + + +PN VTFL++L+AC
Sbjct: 357 ALNIFNEMPQKNVITWTSMITAFAMHGDGKSAL-CLFEQMRNEGVEPNEVTFLNLLYACC 415
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE-------------TEPY--VW 108
++GL+ EG +F MV + ++ EHYG VDLL + P VW
Sbjct: 416 HAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVW 475
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKND 139
G+LL AC +H ++K+G AK LDP +D
Sbjct: 476 GSLLAACWMHGDLKLGAFAAKKILQLDPNHD 506
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF G+ +K+VV WS MI+ +A Q EAL F + C +P+ VT LS++ AC+
Sbjct: 256 ARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGI-RPDEVTMLSVISACA 314
Query: 64 YSGLIEEG 71
G +++
Sbjct: 315 NLGSLDKA 322
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + K+++ W+ MI A HG +AL F+ + + KP+ +TF+ +L
Sbjct: 369 IENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFH-QMKINGEKPDGITFIGVLC 427
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
+C++ GL+EEG F+ MV+++ + +EHYG VDL E +
Sbjct: 428 SCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADA 487
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACRI+ N+ + EL + L+PKN A Y L
Sbjct: 488 VIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 527
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ E++F + ++NV W+G+I +A +G E L F ++ PN+ T +++L
Sbjct: 267 VEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLS 326
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 327 ACARLGALDLG 337
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F G+ ++V W+ MI A HG R+A+E F I S+G P NVTF+ +L C
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFI--SEGLSPTNVTFVGVLNGC 390
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S SGL+ EG + F ++V ++++ +EHYG VDLL +P +
Sbjct: 391 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 450
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG +L +C+ H V +G V LDP + YY L
Sbjct: 451 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLL 488
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +KNVV WS MI+ +++G REA+EAF+ + + +P + TF ++L
Sbjct: 281 MDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFW-EMQKNGVEPGDHTFTAVLS 339
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS+ GL++EG+ FD M +F + N+ HYG VDLL E P
Sbjct: 340 ACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDA 399
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRIH + +GE + + L + Y L
Sbjct: 400 TMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLL 439
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F I +K+++ W+ M+A + IHG A+ F +I DG +P+ VTF+++L ACS++
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMI--KDGFEPDGVTFVAVLSACSHA 525
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGA 110
GL+ EG ++FD M+ +F+++ +EHY VDLL E VWGA
Sbjct: 526 GLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGA 585
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL +CR+H N ++ E A F+L+ + Y L
Sbjct: 586 LLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLL 620
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ NVV WS +I A GQ EALE F + + K N+VT S+L C+
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCA 422
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + +K+V+ W+ +I A+ GQ +ALE F+ + S+ KP+ +TF+ +L
Sbjct: 390 IESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH-EMQMSEVKPDAITFVGVLA 448
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS++GL+ EGI F+ M + + + ++EHYG VD+L + P
Sbjct: 449 ACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDY 508
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V LL ACRIH N+ + E A+ LDPKN Y L
Sbjct: 509 FVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLL 548
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A ++F +++K+VV W+ MI ++A EA++ F + + KPN +T +++L AC
Sbjct: 190 SARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRR-MEIASVKPNEITLVNVLTAC 248
Query: 63 SYSGLIEEGIKV 74
+ S +E +V
Sbjct: 249 ARSRDLETAKQV 260
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +KN+ W+ MI H EAL F + S K + VT S+L AC+
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFN-EMQLSGVKGDKVTMASLLIACT 350
Query: 64 YSGLIEEG 71
+ G +E G
Sbjct: 351 HLGALELG 358
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F G+ +++V WS MIA +AIHG + +AL+ F + S PN VTF S+L
Sbjct: 219 LDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKR-SKIIPNCVTFTSVLS 277
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-------------LATGETEPYV 107
A S+SGL+E+G ++F+ M ++++ ++HYG VDL + T EP V
Sbjct: 278 AYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNV 337
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W LLGAC+ H +GE +++ LDP + Y
Sbjct: 338 VLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENY 374
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYS 65
+F I +K+++ W+ M+A + IHG A+ F +I DG +P+ VTF+++L ACS++
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMI--KDGFEPDGVTFVAVLSACSHA 525
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGA 110
GL+ EG ++FD M+ +F+++ +EHY VDLL E VWGA
Sbjct: 526 GLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGA 585
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL +CR+H N ++ E A F+L+ + Y L
Sbjct: 586 LLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLL 620
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ NVV WS +I A GQ EALE F + + K N+VT S+L C+
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCA 422
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 18/155 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+++F + K++V W+ +I H +HG A+ F ++ S+G +P+NV +++ AC
Sbjct: 320 AQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMV--SEGIRPDNVAMVALFSAC 377
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY--------------V 107
S++GL +EG + F M ++L LEHY VDLL G E V
Sbjct: 378 SHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAV 437
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALLGAC+IH NV +GE L+PKN YY
Sbjct: 438 WGALLGACKIHKNVDVGEEAFTRVIELEPKNVGYY 472
>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
Length = 628
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER+F G + + S MI+++ HG ++A+E F +++ +P++VTFL++L+
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLY 383
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+SGL EEG+ F++M + + +++HY VDLL E E
Sbjct: 384 ACSHSGLKEEGMDCFELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 443
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +AK LDP + A Y L
Sbjct: 444 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLL 483
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F + +KNVV+W+ MIAS + H EA+ F + PN VT+LSIL
Sbjct: 309 IEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIF-PNEVTYLSILS 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY---- 106
ACS++GL+EEG F++++ D + N+ HY VD+L +G+T+ P+
Sbjct: 368 ACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTA 427
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+WG+LLG+ RIH N+++ + A+ F L+P+N
Sbjct: 428 SMWGSLLGSSRIHKNIRLARIAAEQLFRLEPEN 460
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA F + KN W+ +I A +G+ REALE F + + +P +VTF+ +L
Sbjct: 373 IDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRE-AGIEPTDVTFIGVLM 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+S L+EEG + FD M D+ + +EHYG VDLL E
Sbjct: 432 ACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNA 491
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL +C +H NV IGE K L+P + Y L
Sbjct: 492 VIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLL 531
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F G+ ++VV WS MI+ + Q REAL + + + +PN+VT +S+L AC+
Sbjct: 275 ARRLFDGMQSRDVVAWSAMISGYTQADQCREAL-GLFSEMQLARVEPNDVTMVSVLSACA 333
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 334 VLGALETG 341
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ +K+V+ WS M+ A HG+ +EA++ F + KPN +TF+ +L
Sbjct: 301 IDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLS 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEP 105
ACS++GL++EG+ FD M + ++ +EHYG VDLL +G+ +
Sbjct: 361 ACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADA 420
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+WG++L ACR H +V L A+ L+P++
Sbjct: 421 KIWGSVLNACRSHGDVDTAVLAAERLVALEPED 453
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK VV W+ +++ + G A+EAF L + +P++V+ +++L
Sbjct: 200 MRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRL-MQMEGFEPDDVSIVAVLP 258
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 259 ACAQLGALELG 269
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+++F I+++++ W+ MI A+HG+ A + F + ++ +P+++TF+ +L
Sbjct: 374 IEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR-MRKNEIEPDDITFVGLLS 432
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+SG+++ G +F M D+++ LEHYG +DLL T E EP
Sbjct: 433 ACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 492
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL AC++H NV++GE A++ ++PKN Y L
Sbjct: 493 VIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLL 532
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A+++F I K+VV W+ MI+ +A G +EALE F ++ ++ +P+ T +S++ AC
Sbjct: 172 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK-TNVRPDESTMVSVVSAC 230
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETE 104
+ S IE G +V + D NL+ +DL + GE E
Sbjct: 231 AQSASIELGRQVHS-WIDDHGFGSNLKIVNALIDLYIKCGEVE 272
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ K+V+ W+ +I + +EAL F ++ S PN+VT LSIL AC++ G
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR-SGESPNDVTMLSILPACAHLG 335
Query: 67 LIEEG 71
IE G
Sbjct: 336 AIEIG 340
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F +++++V W+ MI A HG+ +AL+ F + + KPN +F+++L
Sbjct: 587 VDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLF-VKMKLEGFKPNGYSFVAVLS 645
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV--------- 107
ACS++GL++EG + F + D+ ++ +EHY VDLL E + ++
Sbjct: 646 ACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGD 705
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC + N+++ E AK+ L PK+ + Y L
Sbjct: 706 APWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 745
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+ IF ++++NV+ W+ MI A +G+ +EA F L + PN+ T++SIL
Sbjct: 81 IDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF-LQMQREGFIPNSYTYVSILN 139
Query: 61 ACSYSGLIE 69
A + +G +E
Sbjct: 140 ANASAGALE 148
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+++F ++++NV W+ MI+ A HG EA F ++ +G P+ T++SIL AC
Sbjct: 489 AKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR--EGIVPDATTYVSILSAC 546
Query: 63 SYSGLIE 69
+ +G +E
Sbjct: 547 ASTGALE 553
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G++++++ W+ MI A HG+ +EA + +L + PN T+LSIL
Sbjct: 182 IDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAF-SLFLQMERGGCLPNLTTYLSILN 240
Query: 61 ACS 63
A +
Sbjct: 241 ASA 243
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+DDA +F G+ D++V+ W+ MI A +G EA F L + P++ T+LS+L
Sbjct: 285 IDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIF-LKMQQEGFVPDSTTYLSLL 342
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+ IF + +NV W+ MI A REAL + +L + P+ TF++IL
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREAL-SLFLQMRREGFFPDATTFVNILS 444
Query: 61 A 61
A
Sbjct: 445 A 445
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD-IMVH 80
MI +A +G +A++ Y + G+PN +T+LSIL AC ++ G K+ I+
Sbjct: 1 MIGGYAEYGYAEDAMKV-YSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59
Query: 81 DFQLDLNLE 89
FQ D+ +E
Sbjct: 60 GFQSDVRVE 68
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 16/147 (10%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
+N+ W+ MI A+HG+ EA+E FY ++ P++VTF+ +L AC++ G++ EG
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLR-EGAAPDDVTFVGVLLACTHGGMVVEGQH 338
Query: 74 VFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIH 118
F+ M DF + LEHYG VDLL E + VWG LLGAC H
Sbjct: 339 FFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFH 398
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V++ E A F L+P N Y L
Sbjct: 399 GHVELAEKAAGALFELEPSNPGNYVIL 425
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +NV W+ MI+ +A +GQ +AL F ++ ++ +PN VT S+L
Sbjct: 164 LEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLP 223
Query: 61 ACSYSGLIEEGIKV 74
AC+ G +E G ++
Sbjct: 224 ACANLGALEVGERI 237
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F I++K+VV W+ +I A +G REAL AF + +PN VTFL++L
Sbjct: 331 VKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGI-RPNKVTFLAVLS 389
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------------TGETE 104
ACS++GL EG+ + ++M + ++ +LEHY + +D+ G
Sbjct: 390 ACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKH 449
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGA+LGACRIH N+ + A+ F ++P N Y L
Sbjct: 450 VGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVML 490
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + KNV W+ +I + + EAL+ F ++ PN TF+ +L
Sbjct: 227 LDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLE-EKTSPNAFTFVGVLS 285
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ LI +G ++ +++
Sbjct: 286 ACADLALIAKGKEIHGLIIR 305
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A++ F + +N+ W+ ++AS++ G +A + F + H PN V++ +++
Sbjct: 62 MENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPH-----PNIVSYNTLIS 116
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQL 84
+ ++ GL E + +F M DF L
Sbjct: 117 SFTHHGLYVESMNIFRQMQQDFDL 140
>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 598
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R F + ++++ +S MIA+ A HG+ ++A++ F L + PN VTF+ +L
Sbjct: 361 IDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLF-LKMQQEGLTPNQVTFVGVLN 419
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS SGLIEEG + F IM + ++ EHY VDLL + +
Sbjct: 420 ACSTSGLIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADA 479
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL ACR++ NV++GE+ A+ F +DP + Y L
Sbjct: 480 TTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLL 519
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F G++D++VV W+ MI +A G+ +A F + G+ N+ T+ +++
Sbjct: 168 DARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFD-----NMGERNSFTWTTMVAGY 222
Query: 63 SYSGLIEEGIKVFDIM 78
+ G ++ ++++D+M
Sbjct: 223 ANYGDMKAAMELYDVM 238
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F + ++N W+ M+A +A +G + A+E + ++ +GK VT+++++
Sbjct: 197 MVDARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVM----NGK-EEVTWVAMIA 251
Query: 61 ACSYSGLIEEGIKVFD 76
G + E ++FD
Sbjct: 252 GYGKLGNVSEARRIFD 267
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F + ++V W+ +I+ +A +GQ EAL F + + S KP++VTF+ +L
Sbjct: 320 MGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR-SGIKPDHVTFVGVLS 378
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
AC+++GL+++G+++F + + ++ +HY +DLL+ +G+ E
Sbjct: 379 ACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNK 438
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH NV + A+ F ++P+N A Y +L
Sbjct: 439 FLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTL 478
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + ++ V W+ M+ + G+ E F ++ +PN T+ +L
Sbjct: 218 VDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLR 277
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ + G +V M
Sbjct: 278 ACAQFAVESFGRQVHGRMA 296
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + K+++ W+ MI A HG +AL F+ + + KP+ +TF+ +L
Sbjct: 411 IENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFH-QMKINGEKPDGITFIGVLC 469
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
+C++ GL+EEG F+ MV+++ + +EHYG VDL E +
Sbjct: 470 SCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADA 529
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACRI+ N+ + EL + L+PKN A Y L
Sbjct: 530 VIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 569
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ E++F + ++NV W+G+I +A +G E L F ++ PN+ T +++L
Sbjct: 309 VEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLS 368
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 369 ACARLGALDLG 379
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 16/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF + ++ V+ W+ M+ ++ HG+ RE LE F L+I + KP++VT L++L CS
Sbjct: 314 ARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCS 373
Query: 64 YSGLIEEGIKVF-DIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+ GL ++G+ +F D+ + + +HYG VD+L E +
Sbjct: 374 HGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAI 433
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG LLGAC +H N+ IGE V ++P+N Y L
Sbjct: 434 WGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVIL 471
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F + ++NVV W+ MI++++ G +AL F ++ S +PN TF ++L
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLR-SGTEPNEFTFATVLT 167
Query: 61 AC 62
+C
Sbjct: 168 SC 169
>gi|341606175|gb|AEK83190.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYXIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|326513920|dbj|BAJ92110.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 503
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D+ER++ G ++ + S MI++ HGQ +A+E F +++ + +PN VTFL++L+
Sbjct: 326 LGDSERVYSGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMN-AGARPNEVTFLALLY 384
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL EEG++ F++M + L +++HY VDLL +
Sbjct: 385 ACSHSGLKEEGLEFFELMTKAYGLQPSVKHYTCIVDLLGRSGCLDEAEALILSMPVRADG 444
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC+ N + E +A+ DP++ A Y L
Sbjct: 445 VIWKTLLSACKTQKNFDMAERIAERVIEFDPQDSAPYVLL 484
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + ++F +++V++W+ MI+++ +HG A+E F L+ S+ KPN TFLS+L
Sbjct: 593 LETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEE-SNIKPNAQTFLSLLS 651
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEP-------------- 105
AC+++G + EG +FD M + ++ +L+HY +DLL +G E
Sbjct: 652 ACNHTGHVLEGRHLFDRM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDG 710
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LL AC+IH+ ++G +A+ DPKND YY
Sbjct: 711 TVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDGYY 747
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
RIF + ++V+ W+ +I+S+ G EA+ F ++ PN VT + +L AC++
Sbjct: 497 RIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVK-EKVYPNKVTCIIVLSACAHL 555
Query: 66 GLIEEGIKV 74
++EG K+
Sbjct: 556 ASLDEGEKI 564
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ AE +F I +VV W+ +IA++A++G REAL+ F+ + P+ VTF+ IL
Sbjct: 505 ISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFH-KMEVEGVAPDEVTFVGILS 563
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY------------- 106
ACS+ GLI++G+K+F MV + ++ EHY VDLL G E
Sbjct: 564 ACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANA 623
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGACRIH N+++ + A+ +P + Y L
Sbjct: 624 GIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLL 663
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +IF + +KN+V W+ +I+ +G +AL++F L+ H KP+ TF L
Sbjct: 404 MDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGH-EGQKPDQSTFACGLS 462
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNLEHYGITV 95
+C++ ++ G ++ +M + DL + + IT+
Sbjct: 463 SCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITM 498
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA +IF I ++VV W+ MIA ++ G+ EAL F ++ K + V++ +++
Sbjct: 342 MDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV-----KKDIVSWNTMVA 396
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ + G ++ IK+F+ M
Sbjct: 397 SYAQVGQMDAAIKIFEEM 414
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 17/154 (11%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F + ++NVV W+ MIA + +HG REA++ F+L + PN+VTF+++L AC+++GL
Sbjct: 268 FDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHL-MRREGPTPNDVTFVAVLAACAHAGL 326
Query: 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPYVWGAL 111
+ EG FD M + L EHY VD+ E P VW A+
Sbjct: 327 VNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAM 386
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGAC++H N +G VA+ L+P+N ++ L
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLL 420
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I D++VV W+ MI+ + +G A+E Y + + P++ TF++ L AC+
Sbjct: 163 ARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIE-VYREMQVAQVVPDSATFVATLSACA 221
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
+G ++ G +V +V D Q+D+++
Sbjct: 222 QAGALDLGREVERRIVSD-QMDVSV 245
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A R+F + ++V W+ +I+ +A +GQ EAL F + + S KP++VTF+ +L
Sbjct: 320 MGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR-SGIKPDHVTFVGVLS 378
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
AC+++GL+++G+++F + + ++ +HY +DLL+ +G+ E
Sbjct: 379 ACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNK 438
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH NV + A+ F ++P+N A Y +L
Sbjct: 439 FLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTL 478
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F + ++ V W+ M+ + G+ E F ++ +PN T+ +L
Sbjct: 218 VDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLR 277
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ E ++ F VH
Sbjct: 278 ACA-----EFAVESFGRQVH 292
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++DAE +F G++ ++ V W+ +I ++ HGQ +AL+AF ++ +G P+ VTF+ +L
Sbjct: 684 VEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAML--DEGTVPDEVTFIGVL 741
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY--------- 106
ACS+ GLIEEG K F+ + + + +EHY VD+L E E +
Sbjct: 742 SACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSN 801
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W +LGAC++H N++ GE A F L+P+ D+ Y
Sbjct: 802 VLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNY 839
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF +I +++ W+ ++A +A GQ +A++ F + + KPN T S L
Sbjct: 583 LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCF-IQMQREGVKPNEFTLASSLS 641
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQ 83
CS ++ G ++ + + Q
Sbjct: 642 GCSRIATLDSGRQLHSMAIKAGQ 664
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F I D +VV WS +I GQ REA E F + H S PN T S++ A
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH-SGVIPNQFTLASLVSAA 441
Query: 63 S 63
+
Sbjct: 442 T 442
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I +KN + W+ MI+ A HG A++ F +I +P+ +TF+ +L
Sbjct: 405 IEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELG-LQPDEITFIGVLS 463
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL++EG + F +MV + L+ ++HY VDLL E +
Sbjct: 464 ACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDA 523
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL ACR+H N+ +GE A LDP + Y L
Sbjct: 524 VVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLL 563
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA ++F + +++V W+ ++ + + +EAL F+ + + +P+++T +++L
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFH-DMQEAMVEPDDITMVNLLS 362
Query: 61 ACSYSGLIEEGIKV 74
ACS G +E G+ V
Sbjct: 363 ACSQLGALEMGMWV 376
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A ++F G +++V W+ +I + G REALE F+ ++ P+ VT + ++
Sbjct: 171 MAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVS 230
Query: 61 ACSYSGLIEEGIKV 74
+ +E G ++
Sbjct: 231 GSAQLRDLELGRRL 244
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV W+ MI A HG R+A + FY ++ S PN VTF+++L
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLS-SHVSPNEVTFMAVLS 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+EEG ++F M F ++L +HY VDL E
Sbjct: 416 ACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL G+C +H + ++G+ A L P + YT L
Sbjct: 476 VVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLL 515
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA+++F + +NVV W+ +IA + + + F ++ SD PN T S+L A
Sbjct: 257 DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLK-SDVAPNEKTLSSVLSA 315
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C++ G + G +V M+ + +++N +DL
Sbjct: 316 CAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDL 350
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A R+F G DK+VV W+ MI +G EA+ +++ + + N +T +S+L A
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM-VYFVEMKKTGVAANEMTVVSVLKA 213
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M AER+F ++ W+ +IA +A +GQ EA+ F L++ S +P+++TF+ +L
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVK-SGTQPDHITFVGVLS 413
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G+ F + + L +HY +DLLA + +
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++W +LLG CRIH N+K+ + A+ F ++P+N A Y +L
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTL 513
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A IF ++D+++V W+ MI + G+ +E + F ++ S +PN TF +L
Sbjct: 254 IEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLR-SGIRPNEFTFSGVLN 312
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ E G KV M
Sbjct: 313 ACANQTSEELGKKVHGYMTR 332
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 48/175 (27%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS--- 57
+ +A+ +F + +++ W+ MI+ + H + EALE F ++ + K N T S
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211
Query: 58 ----------------------------ILFACS----YSGLIEEGIKVFDIMVHD---- 81
+ A S G IEE +FD MV
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271
Query: 82 --------FQLDLNLEHYGITVDLLATG-ETEPYVWGALLGACRIHHNVKIGELV 127
FQ E + + DLL +G + + +L AC + ++G+ V
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKV 326
>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 16/155 (10%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + +VV WS MIA++ HG+ EA++ F + + N+VTFLS+L+ACS+
Sbjct: 341 KVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQ-EKLEANDVTFLSLLYACSHC 399
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----ATGETEPYV-----------WGA 110
GL E+GIK FD+MV + + LEHY VDLL + E E + W
Sbjct: 400 GLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKT 459
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL AC+IH ++ ++++ F LDP++ Y L
Sbjct: 460 LLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLL 494
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + ER+ + +NVV W+ +IA A +G E L+ Y ++ + +P+ +TF+S++
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQ-YNMMKMAGFRPDKITFVSVIS 293
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 294 SCSELATLGQGQQI 307
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + ++F +++V++W+ MI+++ +HG A+E F L+ S+ KPN TFLS+L
Sbjct: 563 LETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEE-SNIKPNAQTFLSLLS 621
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEP-------------- 105
AC+++G + EG +FD M + ++ +L+HY +DLL +G E
Sbjct: 622 ACNHTGHVLEGRHLFDRM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDG 680
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LL AC+IH+ ++G +A+ DPKND YY
Sbjct: 681 TVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDGYY 717
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
RIF + ++V+ W+ +I+S+ G EA+ F ++ PN VT + +L AC++
Sbjct: 467 RIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVK-EKVYPNKVTCIIVLSACAHL 525
Query: 66 GLIEEGIKV 74
++EG K+
Sbjct: 526 ASLDEGEKI 534
>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 692
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ + IF + D++ ++ +I+S HG E EA+ F L+ DG P+ VTF+++L
Sbjct: 500 LEKGKEIFQLVTDRDTATYNTLISSFGKHGHEDEAIMLFDLMKR--DGIAPDKVTFVALL 557
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
+CS++GLIE+G+ +DIM+ D+ + EHY VDL + E E
Sbjct: 558 SSCSHAGLIEKGLHFYDIMLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSSLQDEAE 617
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V G LLGACR+H+ + I ELVAK F +P + Y+ L
Sbjct: 618 IDVLGCLLGACRVHNRMDIAELVAKRIFEQNPSDPGYHILL 658
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AE + + +++VIW+ M+A +A++G AL AF + +P++VT +S+L C
Sbjct: 401 EAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFR-ALQKVGFRPDHVTVVSVLPVC 459
Query: 63 SYSGLIEEGIKVFDIMVHDF 82
++ + +G ++ +V +
Sbjct: 460 NHHSRLIQGKELHAYVVRHY 479
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F I K+VV WS +IA ++ +G++ ++ F ++ + KPN+ T SIL + S
Sbjct: 301 ADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVT-AGLKPNSNTMASILPSLS 359
Query: 64 YSGLIEEGIKVFDIMVHDFQL 84
L G + +H F L
Sbjct: 360 EMKLFRHGKE-----IHGFSL 375
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + KN+ W+ +I A HG EAL F + +PN VTF+SIL
Sbjct: 290 IDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFG-EMERKRIRPNAVTFISILT 348
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
AC+++G IEEG + F MV D+ + +EHYG VDLL+ T E
Sbjct: 349 ACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNS 408
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++WGALL C++H N++I + ++ L+P N +Y+ L
Sbjct: 409 FIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLL 448
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ F I KNVV W+ +I +A +G+ EAL+A Y ++ + KP+N+T L +LF
Sbjct: 226 LEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDA-YRMMRATGLKPDNLTLLGLLF 284
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EPYV 107
C+++GL++EG +F + L EHY VDLL+ + EP +
Sbjct: 285 GCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGI 344
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W ALLG C+IH N K+ E VAK LDPK+ + Y
Sbjct: 345 GFWKALLGGCQIHWNSKLAESVAKRIRALDPKDTSSY 381
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
D+A+R+F + ++NVV W+ MI ++ G EA+ F + C G PN TF +L
Sbjct: 126 DEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEM--CRGGVSPNESTFPCVLT 183
Query: 61 ACSYSGLIEEGIKV 74
+ + +G + G +
Sbjct: 184 SVASAGTLGVGRSI 197
>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
Length = 559
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
DA+R F + +NV+ W+ +I + +G +A+ F ++ DG +PN+VTFLS+L
Sbjct: 368 SDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVE--DGVRPNDVTFLSLLS 425
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW------------ 108
AC + GL +G++ F M+ + +D EHY +DLLA G W
Sbjct: 426 ACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNS 485
Query: 109 ---GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC++H N+ +GE AK+ F +DP + Y L
Sbjct: 486 SMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVL 525
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF 55
A ++F G+ ++VV W+ M++ +A +G+ REALE F L + S +PN T+
Sbjct: 66 ARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFAL-MRASGARPNQFTY 116
>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
DA+R F + +NV+ W+ +I + +G +A+ F ++ DG +PN+VTFLS+L
Sbjct: 368 SDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVE--DGVRPNDVTFLSLLS 425
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW------------ 108
AC + GL +G++ F M+ + +D EHY +DLLA G W
Sbjct: 426 ACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNS 485
Query: 109 ---GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC++H N+ +GE AK+ F +DP + Y L
Sbjct: 486 SMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVL 525
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF 55
A ++F G+ ++VV W+ M++ +A +G+ REALE F L + S +PN T+
Sbjct: 66 ARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFAL-MRASGARPNQFTY 116
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ K++V W+ M+ A+HG +AL+ F ++ +P+ VT +++L
Sbjct: 191 VDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFS-IMRQEGFRPDKVTLVAVLC 249
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPYV 107
AC ++G ++EGI+ F+ M D+ + ++EHYG VDLL G EP V
Sbjct: 250 ACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNV 309
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG LLGACR+H+ V + E V F L+P + Y+ L
Sbjct: 310 VIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLL 349
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + KN+V W+ +++ +A+ G ++A+ +F + + KP++ T +SIL
Sbjct: 90 MEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEE-AGLKPDDGTVISILA 148
Query: 61 ACSYSGLIEEGIKV 74
+C+ SGL+ G +V
Sbjct: 149 SCAESGLLGLGKRV 162
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F G+ +NVV WS +IA A+HG+ ++ L+ F + + P++VT++ +L
Sbjct: 287 IEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFE-DMERAGVMPSDVTYIGLLS 345
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG FD MV L+ +EHYG VDLL + +
Sbjct: 346 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 405
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGAC++H NV++G+ VA+ L P + Y +L
Sbjct: 406 VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVAL 445
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ MIA +A G +EA+E F + ++ PN VT +S+L A S
Sbjct: 189 ARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFR-EMQMAEVPPNYVTLVSVLPAMS 247
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 248 RLGALELG 255
>gi|404356831|gb|AFR63408.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
Length = 204
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 29 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKE-KGFKPDKVTFVGVLS 87
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS+ GL+EEG + MV D+ ++ HY VD L T P
Sbjct: 88 ACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDA 147
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+I+ +V++G+L AK L+P + Y SL
Sbjct: 148 LVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSL 187
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 25/163 (15%)
Query: 3 DAERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLV----IHCSDGKPNNVTFLS 57
DA +F I + K+V+ W+ MI +A HG EALE F L+ IH P +TF+S
Sbjct: 455 DACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIH-----PTYITFIS 509
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY- 106
++ AC+++GL+EEG + F M++D+ ++ +EH+ VD+L T P+
Sbjct: 510 VMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFK 569
Query: 107 ----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACR+H+NV++ + A L+P++ A Y L
Sbjct: 570 PDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLL 612
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 93/163 (57%), Gaps = 23/163 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREAL---EAFYLVIHCSDGKPNNVTFLS 57
+++A +F I +K++V W+ MIA +A HG +EAL E+ + I KP++VT +
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTI-----KPDDVTLVG 510
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY- 106
+L ACS++GL+++G++ F+ M ++ + N +HY +DLL ++ P+
Sbjct: 511 VLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFY 570
Query: 107 ----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH + ++GE A+ F ++P N Y L
Sbjct: 571 PDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLL 613
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + KN+ W+ +I A HG +EAL+ F + KPN VTF+S+
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF-AKMEMESVKPNAVTFVSVFT 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV-------------DLLATGETEP-- 105
AC+++GL++EG +++ M+ D+ + N+EHYG V +L+ E EP
Sbjct: 397 ACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNA 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL CRIH N+ I E+ L+P N YY
Sbjct: 457 VIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYY 493
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ AE +F + K+++ W+ MI ++ + + REA+ FY ++ +G P+ VT +++
Sbjct: 237 LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME--EGIIPDEVTMSTVI 294
Query: 60 FACSYSGLIEEGIKV 74
AC++ G++E G +V
Sbjct: 295 SACAHLGVLEIGKEV 309
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+RIF + K++ W+ MI+ A+HG AL F + S+G P+++TF+ +L AC
Sbjct: 418 AKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMT--SEGFVPDDITFVGVLTAC 475
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YV 107
++GL+ G + F M+ D+++ L HYG +DL E +P +
Sbjct: 476 KHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAI 535
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGACRIH +++ E VAK F L+P+N + Y L
Sbjct: 536 WCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLL 573
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F I DKNVV W+ MI + +EAL F ++ S+ PN+VTFLSIL
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQ-SNIDPNDVTFLSILP 370
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
AC+ G ++ G VH + +D N++ TV L +
Sbjct: 371 ACANLGALDLG-----KWVHAY-VDKNMKSMKNTVALWTS 404
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F I ++VV W+ MI+ +A G+ EA+ AF+ + + PN T LS+L
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAM-AFFEEMRRAKVTPNVSTMLSVLS 268
Query: 61 ACSYSG 66
AC+ SG
Sbjct: 269 ACAQSG 274
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +NVV W+ +I+ A++G+ ++ F +I PN TFL +L
Sbjct: 286 LEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLA 345
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY------------ 106
CSY+G +E G ++F +M+ F+L+ EHYG VDL++ TE +
Sbjct: 346 CCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANA 405
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR H +VK+ E+ A + ++P N Y L
Sbjct: 406 AMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLL 445
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 3 DAER---IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
D ER +F + ++++V W+ MI+S + G++REALE F +I P+ T +++L
Sbjct: 183 DVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMID-QGFDPDEATVVTVL 241
Query: 60 FACSYSGLIEEG 71
+ G+++ G
Sbjct: 242 PISASLGVLDTG 253
>gi|341606127|gb|AEK83166.1| At1g74600-like protein [Capsella grandiflora]
gi|341606129|gb|AEK83167.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+ IF + K+V+ W+ +I +A +G+ R +L+ FY + S +P+ +TF+ +LF
Sbjct: 516 LDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLK-FYDAMVSSGTRPDFITFIGLLF 574
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++EG K F M + + EHY +DL + +
Sbjct: 575 ACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDA 634
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LL ACR+H N+++ E A + F L+P N Y L
Sbjct: 635 TVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVML 674
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F ++K+++ W+G+IA++A HG EA+ Y + + KPN+ T++ +L ACS
Sbjct: 379 ARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMH-LYKNMQENGYKPNDATYVGLLSACS 437
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPYV 107
++GL++EG+K+F+ MV D + + EHY VDL + T V
Sbjct: 438 HAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTV 497
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C H N IG+L AK +P N YT L
Sbjct: 498 WSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLL 535
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+F G+ D++VV W+ M+A++A G +EA F D + N VT+ ++L
Sbjct: 57 VSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLF----DRPDARRNVVTWTALLS 112
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ + ++E +F+ M
Sbjct: 113 GYARARRVDEAEALFEGM 130
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + +NV+ W+ M+ + Q AL+ F ++ +PN VTFL L
Sbjct: 275 LKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCML-VQGIQPNQVTFLGSLD 333
Query: 61 ACSYSGLIEEGIKVFDIM 78
ACS + EG +V ++
Sbjct: 334 ACSNLAALCEGQQVHQMI 351
>gi|341606125|gb|AEK83165.1| At1g74600-like protein [Capsella grandiflora]
gi|341606133|gb|AEK83169.1| At1g74600-like protein [Capsella grandiflora]
gi|341606137|gb|AEK83171.1| At1g74600-like protein [Capsella grandiflora]
gi|341606179|gb|AEK83192.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + +K+V+ W+ +I A+ GQ +ALE F+ + S+ KP+ +TF+ +L
Sbjct: 259 IESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH-EMQMSEVKPDAITFVGVLA 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS++GL+ EGI F+ M + + + ++EHYG VD+L + P
Sbjct: 318 ACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDY 377
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V LL ACRIH N+ + E A+ LDPKN Y L
Sbjct: 378 FVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLL 417
>gi|224577427|gb|ACN57387.1| At1g74600-like protein [Capsella grandiflora]
gi|224577429|gb|ACN57388.1| At1g74600-like protein [Capsella grandiflora]
gi|224577431|gb|ACN57389.1| At1g74600-like protein [Capsella grandiflora]
Length = 176
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 16 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 74
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 75 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 134
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 135 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 174
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + K+++ W+ MI++ A HG +A F L+++ S +P+ VTFL++L
Sbjct: 469 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLY-SGIRPDGVTFLALLT 527
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA------------TGETEP--- 105
A ++ G +++G +F+ M D+ ++ +EHYG VD+L T + P
Sbjct: 528 AYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND 587
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRI+ +V++GE V K L P YY L
Sbjct: 588 VVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILL 627
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++VV W+ M++ +A + REALE F + +P+ V +S++ AC+
Sbjct: 371 ARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGV-RPDEVAMVSVISACT 429
Query: 64 YSGLIEEGIKV 74
G +E G +V
Sbjct: 430 SLGDLETGFEV 440
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+DDA +F I N V W+ +IA H HG +A+ F ++ +G KP+++TF+++L
Sbjct: 503 LDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML--DEGVKPDHITFVTLL 560
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL++EG F++M D+ + +L+HYG VDL + +
Sbjct: 561 SACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPD 620
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR+H NV +G++ ++ F ++P++ Y+ L
Sbjct: 621 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 661
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+D A +F + +K+V+ W+ +I+ +A +G EA+E Y ++ G+ N T++S+
Sbjct: 400 VDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIE-MYNIMEEEGGEISANQGTWVSV 458
Query: 59 LFACSYSGLIEEGIKV 74
L ACS +G + +G+K+
Sbjct: 459 LPACSQAGALRQGMKL 474
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++DAE +F G++ ++ V W+ +I ++ HGQ +AL+AF ++ +G P+ VTF+ +L
Sbjct: 443 VEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAML--DEGTVPDEVTFIGVL 500
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY--------- 106
ACS+ GLIEEG K F+ + + + +EHY VD+L E E +
Sbjct: 501 SACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSN 560
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LGAC++H N++ GE A F L+P+ D+ Y L
Sbjct: 561 VLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILL 601
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF +I +++ W+ ++A +A GQ +A++ F + + KPN T S L
Sbjct: 342 LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCF-IQMQREGVKPNEFTLASSLS 400
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQ 83
CS ++ G ++ + + Q
Sbjct: 401 GCSRIATLDSGRQLHSMAIKAGQ 423
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + KN+ W+ +I A HG +EAL+ F + KPN VTF+S+
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF-AKMEMESVKPNAVTFVSVFT 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV-------------DLLATGETEP-- 105
AC+++GL++EG +++ M+ D+ + N+EHYG V +L+ E EP
Sbjct: 397 ACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNA 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL CRIH N+ I E+ L+P N YY
Sbjct: 457 VIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYY 493
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ AE +F + K+++ W+ MI ++ + + REA+ FY ++ +G P+ VT +++
Sbjct: 237 LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME--EGIIPDEVTMSTVI 294
Query: 60 FACSYSGLIEEGIKV 74
AC++ G++E G +V
Sbjct: 295 SACAHLGVLEIGKEV 309
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ AE++F I +++ W+ +I+ +A++G +A +AF + P+ VTF+ +L
Sbjct: 507 VQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQ-MSSERVVPDEVTFIGMLS 565
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY------------- 106
ACS++GL +G+ +F M+ DF ++ EHY VDLL G E
Sbjct: 566 ACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANA 625
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LLGACR+H N+++G A+ F L+P N + Y +L
Sbjct: 626 GLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITL 665
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
MD A IF + +KN+V W+ +IA + +AL++ LV+ +G KP+ TF L
Sbjct: 406 MDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKS--LVMMGKEGKKPDQSTFACTL 463
Query: 60 FACSYSGLIEEG 71
AC+ ++ G
Sbjct: 464 SACANLAALQVG 475
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE+IF +N+V W+ MI +A G + AL F +I + PN +T ++++
Sbjct: 372 VEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVIT 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--ETEPY------------ 106
+CS GL ++G ++F+ M F ++ EHY VDLL E + Y
Sbjct: 432 SCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 491
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
VWGALLGAC++H ++G + A+ F LDP++
Sbjct: 492 SVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 525
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +FG + ++NVV W+ ++ + + G+ E +EA Y + + G PN V+ + AC+
Sbjct: 173 ARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEA-YFGLREAGGLPNVVSACAFFNACA 231
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDLNL 88
+ + G + +V F++D+++
Sbjct: 232 GAMYLSLGEQFHGFVVKCGFEMDVSV 257
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F G+ +N V W M+A++A +G E EA A YL S +P + S L C
Sbjct: 273 KARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAA-YLGARRSGEEPTDFMVSSALTTC 331
Query: 63 S 63
+
Sbjct: 332 A 332
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F G K+VV W+ MI+ A +G +A+ F +I SD P+ TF +L
Sbjct: 289 VDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIR-SDVAPDEQTFTGVLS 347
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETE 104
ACS+SGL++EG + FD+M ++ L N+ HYG VDL+ +
Sbjct: 348 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 407
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRIH +V +GE V + L + Y L
Sbjct: 408 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLL 448
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F +++K++V W+ M+ + A +G +EA+ F + S N ++FL IL
Sbjct: 304 MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE-EMRKSGIYLNQISFLCILT 362
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG FD M+ ++ L+ +EHY VDLL E
Sbjct: 363 ACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTA 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALL ACR+H N K+G+ A F LDP
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFQLDP 452
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+E F I +VV W+ MIA+ A HG AL +F + + +P+ +TFLS+L AC
Sbjct: 352 DSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG-EMRSNRVEPDGITFLSLLSAC 410
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++G + E + F+ M+ +++ EH+ VD+L+ G E + +
Sbjct: 411 GHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 470
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H NVK+GEL AK L+P+N Y L
Sbjct: 471 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVL 508
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A+ +F I +++ W+ MI +A +G EAL+ ++ +P++ T +S+L A
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG-MQPDHSTLISVLTA 308
Query: 62 CSYSGLIEEGIK 73
CS ++EG K
Sbjct: 309 CSSLASLQEGRK 320
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 18/145 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I DK+VV W+ MI +A+ G +EAL+ F + C G P N+TF+ IL
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSM--CRMGLHPTNITFIGIL 311
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC +SG + EG +F+ M ++ ++ +EHYG V+LL E +
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 371
Query: 105 PYVWGALLGACRIHHNVKIGELVAK 129
P +WG LLGACR+H + +GE + +
Sbjct: 372 PVLWGTLLGACRLHGKIALGEKIVE 396
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F G+ +++ V W+ MI + +G EAL F ++ + KPN VT LS+L
Sbjct: 153 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLS 211
Query: 61 ACSYSGLIEEG 71
AC G +E G
Sbjct: 212 ACGQLGALESG 222
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + +FG + +V W+ +I HA+ G +AL FY + +PN TF SIL
Sbjct: 25 LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN-FYAQMLTQGVEPNAFTFSSILK 83
Query: 61 AC 62
C
Sbjct: 84 LC 85
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + K+++ W+ MI++ A HG +A F L+++ S +P+ VTFL++L
Sbjct: 282 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLY-SGIRPDGVTFLALLT 340
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA------------TGETEP--- 105
A ++ G +++G +F+ M D+ ++ +EHYG VD+L T + P
Sbjct: 341 AYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND 400
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRI+ +V++GE V K L P YY L
Sbjct: 401 VVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILL 440
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + +++VV W+ M++ +A + REALE F + +P+ V +S++
Sbjct: 181 LELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGV-RPDEVAMVSVIS 239
Query: 61 ACSYSGLIEEGIKV 74
AC+ G +E G +V
Sbjct: 240 ACTSLGDLETGFEV 253
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++N++ W+ MIA +A +G+ ++A+ F + + +PNN+TF+S+L
Sbjct: 542 IDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMG-FEPNNITFVSLLT 600
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-------------ATGETEP-- 105
ACS+ GLI EG + FD M + + HY VDLL A +P
Sbjct: 601 ACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCE 660
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACR+H NV++ L A + LDP++ Y L
Sbjct: 661 AAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLL 700
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F DK+VV W+ MI +A H EA+E F L++ S +PN VT ++++
Sbjct: 308 LKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELML-LSHVEPNEVTLIAVVS 366
Query: 61 ACSYSGLIEEGIKVFD----------IMVHDFQLDLNLEHYGIT-----VDLLATGETEP 105
ACS G +E G +V + + +H+ LD+ ++ + D +AT +
Sbjct: 367 ACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDV-- 424
Query: 106 YVWGALLGACRIHHNVKIGEL-VAKDPFHLDPKNDA 140
Y W ++ ++ K G+L A+ F P+ +A
Sbjct: 425 YSWTSM-----VNGYAKCGDLESARRFFDQTPRKNA 455
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R F KN V WS MIA ++ + + +E+L+ F+ ++ P T +S+L
Sbjct: 440 LESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMME-RGVVPIEHTLVSVLS 498
Query: 61 AC 62
AC
Sbjct: 499 AC 500
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +FGGII ++VV W+ ++ A HG+ E L A Y + + KPN VTF+ +++ACS
Sbjct: 198 AREVFGGIIVRDVVSWTTILVGEAQHGRVEEVL-ALYDRMLLAGMKPNEVTFVGLIYACS 256
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
++GL+++G ++FD M ++ + L+HY +DLL+ T PY W
Sbjct: 257 HAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASW 316
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+ H++ ++ VA + L PK+ + Y L
Sbjct: 317 GALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILL 353
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A IF + +NVV WS MI +A +G EALE F + +PN +TF+ +L
Sbjct: 271 MDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGV-RPNKITFVGVLS 329
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
AC + GL+EEG F +M +F+L+ L HYG VDLL+ E P
Sbjct: 330 ACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNV 389
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+G C +V++ E VA L+P ND Y L
Sbjct: 390 MVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVL 429
>gi|222636482|gb|EEE66614.1| hypothetical protein OsJ_23194 [Oryza sativa Japonica Group]
Length = 412
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F G+ ++V W+ MI A HG R+A+E F I S+G P NVTF+ +L C
Sbjct: 64 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFI--SEGLSPTNVTFVGVLNGC 121
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S SGL+ EG + F ++V ++++ +EHYG VDLL +P +
Sbjct: 122 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 181
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG +L +C+ H V +G V LDP + YY L
Sbjct: 182 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLL 219
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F G K+VV W+ MI+ A +G +A+ F +I SD P+ TF +L
Sbjct: 275 VDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIR-SDVAPDEQTFTGVLS 333
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETE 104
ACS+SGL++EG + FD+M ++ L N+ HYG VDL+ +
Sbjct: 334 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 393
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGACRIH +V +GE V + L + Y L
Sbjct: 394 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLL 434
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F I++K++ + MI A+HG+ A + L DG +P+++TF+ +L
Sbjct: 364 IEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFD--LLSRMKKDGIEPDDITFVGLL 421
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
ACS++GL + G K+F M D++++ LEHYG +DLL T E +
Sbjct: 422 SACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPD 481
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL AC+IH N+++GEL+A+ ++PKN Y L
Sbjct: 482 GVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLL 522
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A+++F I K+VV W+ MI+ +A G+ +EALE F ++ D KP+ T ++L
Sbjct: 160 MDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM-DVKPDESTMATVLS 218
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
C++SG +E G ++ I H F +L L
Sbjct: 219 TCTHSGNVELGRQIHSWIDNHGFGSNLKL 247
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F G+ K+V+ W+ +I +A +EAL F ++ + PN+VT LSIL
Sbjct: 261 MERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE-TPNDVTMLSILP 319
Query: 61 ACSYSGLIEEG 71
AC++ G I+ G
Sbjct: 320 ACAHLGAIDIG 330
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F I + N + W+ MI HA+ AL + +I PN+ TF + +C+ S
Sbjct: 34 VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLS-PNSYTFPFLFKSCAKSK 92
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
+EG Q+ + YG+TVDL
Sbjct: 93 AAQEGK----------QIHAQILKYGLTVDL 113
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF G+ K+VV W+ +I + +HGQ A+ F +I KP+ F+S+L
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIR-GGIKPDGTAFVSVLS 323
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL +G+ F +M + L EHY VDLL +
Sbjct: 324 ACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADG 383
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC+IH NV++ EL + L+P N YY L
Sbjct: 384 ALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLL 423
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + + ++V W+ I+ HA +G EAL F ++ C KPN+VTF+++L
Sbjct: 438 LDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFIAVLT 496
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+E+G D M+ + + ++HY +D+ A E +
Sbjct: 497 ACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDA 556
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W L C H N+++GE+ ++ LDP++ A Y
Sbjct: 557 MSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGY 593
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F GI ++V W+ MI +A+HG EA F + + KPN++TFL++L
Sbjct: 639 VDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER-MELGNVKPNHITFLAVLT 697
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------ 106
ACS++GL++ G K F+ M + + +LEH D L A E Y
Sbjct: 698 ACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTS 757
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VW LL ACR+H N + E VAK F L+PK+
Sbjct: 758 SVWSTLLRACRVHKNTVLAEEVAKKIFELEPKS 790
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD + ++F D + V+W+ M+A +A +G EAL F ++ + +P VTF S++
Sbjct: 538 MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQ-AGVRPVPVTFSSLIP 596
Query: 61 ACSYSGLIEEG 71
A L+ G
Sbjct: 597 AFGNLSLLRLG 607
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I +K + W+ M+ +AIH E + Y + +P+ +TF ++L AC
Sbjct: 243 AYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVM-ILYDKMRERHIRPDAITFTALLSACK 301
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP-----YVW 108
SGL++EG K FD M D+ + +EHY VDLL ET P +W
Sbjct: 302 NSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIW 361
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL +C+IH N+K+ E+ A+ F ++P N A Y
Sbjct: 362 GALLASCKIHKNIKLAEIAARKLFKMEPNNSANY 395
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
RI I NVV W+ +I+ + + + +AL+ F + + KPN+ T S+L AC+
Sbjct: 144 RIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQ-MQAENVKPNSTTICSLLCACAGP 202
Query: 66 GLIEEG 71
L+++G
Sbjct: 203 SLLKKG 208
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 16/161 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F K + W+ MI +A+HG+ +A+ F ++ C G +P+ VTF+ +L
Sbjct: 294 LELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLL 353
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC++ GL+E+G F++M+ ++ ++ + HYG +DLL E +
Sbjct: 354 NACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPD 413
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LL C++H + E AK +DP N Y T L
Sbjct: 414 EVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTML 454
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH---------CSDGKPNNVTFLS 57
+F ++D++V W+ +I+ +G E + F ++ C KPN VT +
Sbjct: 189 VFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVC 248
Query: 58 ILFACSYSGLIEEG 71
+L AC + G+++ G
Sbjct: 249 VLSACGHGGMLQLG 262
>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 89/149 (59%), Gaps = 16/149 (10%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+ K V+ W+ MI +A HG EALE F L + D +P ++TF+S+L AC+++GL+EEG
Sbjct: 426 LQKEVISWNAMIGGYASHGYAVEALEVFKL-MKSFDVRPTHITFISVLHACAHAGLVEEG 484
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE---------PY-----VWGALLGACR 116
++F+ M +F ++ ++EHY VD+++ G+ E P+ VWGALL A +
Sbjct: 485 REIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAK 544
Query: 117 IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+H+ +++ + A+ L+P + A Y L
Sbjct: 545 VHNKIEVARVAAEALIRLEPDSSAPYVLL 573
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F G+ +NVV WS +IA A+HG+ ++ L+ F + + P++VT++ +L
Sbjct: 310 IEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFE-DMERAGVMPSDVTYIGLLS 368
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+ EG FD MV L+ +EHYG VDLL + +
Sbjct: 369 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 428
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGAC++H NV++G+ VA+ L P + Y +L
Sbjct: 429 VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVAL 468
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ MIA +A G +EA+E F + ++ PN VT +S+L A S
Sbjct: 212 ARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFR-EMQMAEVPPNYVTLVSVLPAMS 270
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 271 RLGALELG 278
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F + +N W+ +I A +G+ REALE F ++ ++ +P +VTF+ +L
Sbjct: 424 IKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLE-ANIEPTDVTFIGVLL 482
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ L+EEG + F M D+ + +EHYG VDLL E
Sbjct: 483 ACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNA 542
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW ALL AC +H NV+IGE K LDP + Y
Sbjct: 543 VVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNY 579
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++VV WS MI+ + + REAL A + + ++ PN+VT +S+L
Sbjct: 323 LDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREAL-AIFNEMQGTEVNPNDVTMVSVLS 381
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 382 ACAVLGALETG 392
>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 861
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 24/162 (14%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +NV+ W+ +I ++ +HG EAL F ++ + PN VTF++ L ACS
Sbjct: 541 ARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACS 600
Query: 64 YSGLIEEGIKVFDIMVHDF--------------------QLDLNLEHYGITVDLLATGET 103
+SGL++ G+++F M D+ +LD E YGI + +A GE
Sbjct: 601 HSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLD---EAYGI-ISSMAPGEH 656
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ W +LGACR+H NVK+G + A+ F L+P ++Y L
Sbjct: 657 QVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLL 698
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 1 MDDAERIF--GGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+DDA+R+F G ++V W+ MI+ G+ EA++ Y ++ +P+ VTF S
Sbjct: 208 VDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGV-RPDGVTFASA 266
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102
L ACS L+ G +V ++ D L N VD+ A+ E
Sbjct: 267 LPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNE 310
>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
Length = 717
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F ++ K++ W+ M+ +AI+G E + F +I S P+ +TF+++L CS
Sbjct: 398 SRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE-SGVAPDGITFVALLSGCS 456
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+GL E G+ +F+ M +F++ LEHY VD+L ET P+ +W
Sbjct: 457 DTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIW 516
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G+LL +CR+H NV +GE+ AK+ F L+P N Y
Sbjct: 517 GSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNY 550
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A+++F + K+ W+ MI AI+G EAL F +I S P+ +T++ +L AC
Sbjct: 393 KAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASI-TPDEITYIGVLCAC 451
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+++G++E+G F M + N+ HYG VDLL + V
Sbjct: 452 THAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIV 511
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGACR+H NV++ E+ AK L+P+N A Y L
Sbjct: 512 WGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLL 549
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A + F I +++ V W+ MI + + EAL A + + S+ KP+ T +SIL
Sbjct: 290 IDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEAL-ALFREMQMSNVKPDEFTMVSILT 348
Query: 61 ACSYSGLIEEG 71
AC++ G +E G
Sbjct: 349 ACAHLGALELG 359
>gi|449532090|ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Cucumis sativus]
Length = 472
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
++E++F + N+V W+ MI+ + HG+ ++L F + C +PN+VT +IL +C
Sbjct: 233 NSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGI-QPNSVTLTAILASC 291
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
S++G I EG ++F ++ D +++ +EHY VDLL+ + +
Sbjct: 292 SHAGYINEGWRIFQSIISDNKVEPTVEHYACAVDLLSRFGFLKEAFLLIRNMKVKAAASI 351
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL C IH N++ GE+ A F L+P N + + +L
Sbjct: 352 WGALLSGCMIHRNLEFGEIAANQLFKLEPTNPSNFIAL 389
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + KN++ W+ MIA + +HG + A+ A + + S +P+ +F +IL+AC
Sbjct: 773 ARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAI-ALFEQMRGSGIEPDAASFSAILYACC 831
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYVW 108
+SGL EG + F M +++++ L+HY VDLL+ TG E + +W
Sbjct: 832 HSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIW 891
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LL CRIH NVK+ E VA F L+P+N YY L
Sbjct: 892 VSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLL 928
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+E F I +VV W+ MIA+ A HG AL +F + + +P+ +TFLS+L AC
Sbjct: 280 DSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG-EMRSNRVEPDGITFLSLLSAC 338
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++G + E + F+ M+ +++ EH+ VD+L+ G E + +
Sbjct: 339 GHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 398
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H NVK+GEL AK L+P+N Y L
Sbjct: 399 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVL 436
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A+ +F I +++ W+ MI +A +G EAL+ ++ +P++ T +S+L A
Sbjct: 178 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG-MQPDHSTLISVLTA 236
Query: 62 CSYSGLIEEGIK 73
CS ++EG K
Sbjct: 237 CSSLASLQEGRK 248
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE+IF +N+V W+ MI +A G + AL F +I + PN +T ++++
Sbjct: 372 VEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVIT 431
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--ETEPY------------ 106
+CS GL ++G ++F+ M F ++ EHY VDLL E + Y
Sbjct: 432 SCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 491
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
VWGALLGAC++H ++G + A+ F LDP++
Sbjct: 492 SVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 525
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +FG + ++NVV W+ ++ + + G+ E +EA Y + + G PN V+ + AC+
Sbjct: 173 ARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEA-YFGLREAGGLPNVVSACAFFNACA 231
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDLNL 88
+ + G + +V F++D+++
Sbjct: 232 GAMYLSLGEQFHGFVVKCGFEMDVSV 257
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F G+ +N V W M+A++A +G E EA A YL S +P + S L C
Sbjct: 273 KARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAA-YLGARRSGEEPTDFMVSSALTTC 331
Query: 63 S 63
+
Sbjct: 332 A 332
>gi|356515016|ref|XP_003526197.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g26900, mitochondrial-like [Glycine max]
Length = 439
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF + DK+V W+ MI+ +HGQ A+ F + KPN +TFL+IL
Sbjct: 245 LDEAMDIFDRMEDKDVKSWTAMISGLGVHGQPNNAIRLFNR-MEKEGFKPNELTFLAILT 303
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEP 105
ACS+ GL+ EG+ VF IMVH++ +EHYG +DLL T + +
Sbjct: 304 ACSHGGLVVEGMXVFKIMVHEYVFSPQVEHYGCLIDLLGRAGMLYETHKLIDSFTIKGDA 363
Query: 106 YVWGALLGACRIHHNVKIGELVA---KDPFHLDPKNDAYYTS 144
W LL ACRI+ +VK+G+ V K + P N +S
Sbjct: 364 TAWHTLLSACRIYRDVKLGKCVKDVLKSIYAEHPTNSLLISS 405
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+VV+W+ +I ++A +G EAL +F + KPN+ TF +L AC
Sbjct: 147 AHQVFDRVAKKDVVLWNYLIGNYARNGMVGEALASFEQ-MSVXGMKPNSSTFSGLLSACP 205
Query: 64 YSGLIE 69
SG I+
Sbjct: 206 TSGAIQ 211
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 4 AERIF--GGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH---CSDGKPNNVTFLSI 58
A ++F G + ++++ W+GMIA++A HG +EA+ F + C+ N+VTF+ +
Sbjct: 340 ARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCA----NDVTFVGL 395
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT--------------GETE 104
L ACS++GL+EEG K FD ++ + + L +HY VDL GE
Sbjct: 396 LTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEV 455
Query: 105 PY-VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P VWGALL C +H N IG+LVA+ ++P+N Y+ L
Sbjct: 456 PLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLL 497
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++FG + +KNV+ W+ M+ + HG EAL F ++ ++ KPN TF+++L
Sbjct: 235 LNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLG 294
Query: 61 ACSYSGLIEEGIKVFDIM 78
ACS + EG ++ ++
Sbjct: 295 ACSDLAGLTEGQQIHQMI 312
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AER+F + +NVV W+ M+ +A +G ++AL+ F + + N V++ +I+ A
Sbjct: 82 EAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM-----PERNVVSWNTIITAL 136
Query: 63 SYSGLIEEGIKVFDIM 78
G IE+ ++FD M
Sbjct: 137 VQCGRIEDAQRLFDQM 152
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE++F + +++ W+ MI+ A++G AL F +I+ +P+++TF+ +L AC+
Sbjct: 418 AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMIN-EGFQPDDITFVGVLSACT 476
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+G +E G + F M D+ + L+HYG +DLLA E EP +W
Sbjct: 477 QAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIW 536
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LL ACRIH V+ GE VA+ F L+P+N Y L
Sbjct: 537 GSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLL 573
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA R+F I K+VV W+ MIA + G+ EAL F + +D PN T +S+L
Sbjct: 209 VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQE-ADVSPNQSTMVSVLS 267
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC + +E G K V D NL+ VD+
Sbjct: 268 ACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDM 303
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ DK+V++W+ MI + EAL F +++ + PN+VTFL++L AC+
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLR-ENVTPNDVTFLAVLPACA 371
Query: 64 YSGLIEEG 71
G ++ G
Sbjct: 372 SLGALDLG 379
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ +F + KN+V W+ ++ +++HG+ +E + F ++ + KP+ ++F S+L AC
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMR-TRLKPDFISFTSLLSACG 500
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
GL +EG K F++M ++ + LEHY V+LL E + VW
Sbjct: 501 QVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVW 560
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL +CR+ +NV + E+ A+ FHL+P+N Y
Sbjct: 561 GALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTY 594
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
+D A +FG ++ NVV W+ +IA A +G++ EALE F + + KPN VT
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFR-EMQVAGVKPNRVTIP 392
Query: 57 SILFAC 62
S+L AC
Sbjct: 393 SMLPAC 398
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + K+ W+ MI+ + G ++ALE F ++ + PN+VTF+S+L ACS+SG
Sbjct: 302 VFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLR-AGVVPNSVTFVSVLSACSHSG 360
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
LIEEGI++FD M +++D LEHYG +DLL G E + +W +L
Sbjct: 361 LIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSL 420
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L AC + N ++ E+ K+ +P +D Y L
Sbjct: 421 LSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLL 454
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + ++VV W+ +I H Q ALE F ++ +P +VT + +L
Sbjct: 195 VDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMV-LEGHRPTHVTIVGVLS 253
Query: 61 ACSYSGLIEEGIKV----------FDIMVHDFQLDLNLEHYGITVDLLATGETE---PYV 107
AC+ G ++ G + +I+V + +D+ + I + E + +
Sbjct: 254 ACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFT 313
Query: 108 WGALLGACRIHHNVK 122
W ++ C + + K
Sbjct: 314 WTTMISCCTVQGDGK 328
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ ++FGG+ +++V W+ M+ + HG EA+E F ++ S +P+ V F++IL AC
Sbjct: 348 DSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR-SGIRPDRVVFMAILSAC 406
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S++GL++EG++ F +MV D+ + + E YG VDLL E+ P+ V
Sbjct: 407 SHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECV 466
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG LGAC+ H +G+L A L P Y L
Sbjct: 467 WGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVML 504
>gi|357152611|ref|XP_003576177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g12770-like [Brachypodium distachyon]
Length = 486
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D ++ +F G++D+NVV WS +IA + +HG+ +EA+ + ++ KPN +TF+S++ +
Sbjct: 263 DSSQAVFAGMLDRNVVSWSTLIACYGVHGKGKEAVRIYEEMLP-QRFKPNGITFMSVVSS 321
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV------------- 107
CS+SGL+ +G +F+ M ++ EHY VD+L G E V
Sbjct: 322 CSHSGLVTDGRMIFESMSKVHGVEPTAEHYACVVDILGRAGAIEEAVRLIRKMPMGPCAS 381
Query: 108 -WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGA+L AC ++NV GE+ F L+ N + Y +L
Sbjct: 382 SWGAVLSACATYNNVDDGEIAXFRLFELEEDNASNYVTL 420
>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 699
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA++ F + N +IW+ +I +A HGQ ALE FYL+ KP+++TF+++L AC
Sbjct: 448 DAKKCFETTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMRE-KKVKPDHITFVAVLTAC 506
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S++GL+EEG K+ M DF + L +EHY VDL ET P+ V
Sbjct: 507 SHNGLVEEGRKIIQSMESDFGIPLRMEHYACAVDLYGRAGYLEEGKALVETMPFEPDAMV 566
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LLGACR N+++ VAK L+P++ + Y L
Sbjct: 567 LRTLLGACRSCGNIELASHVAKMLLVLEPEDHSTYVLL 604
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1 MDDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+ DAER+F G + +++V W+ M+A++ +H +E A + F + + +P++ ++
Sbjct: 252 LQDAERVFVGAVTVTCRDLVTWNSMLAAYLLHKKENLAFDVF-IEMQSFGFEPDDYSYTG 310
Query: 58 ILFACS 63
++ CS
Sbjct: 311 VISGCS 316
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 22/160 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV--IHCSDGKPNNVTFLSI 58
+DDA R+F + +KNV W+ MI + +G EALE F + H +PN VTFL +
Sbjct: 324 IDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHI---EPNYVTFLGV 380
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY----------- 106
L ACS+SGL+++G ++F+ M D+ + +EHY VDL+ GE
Sbjct: 381 LSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAMPERH 440
Query: 107 ---VWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
VW ALL +C +H NV + + A + F L D + AY
Sbjct: 441 NSDVWAALLSSCNLHGNVDLASIAASELFKLNADKRPGAY 480
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF K++V+++ M+ + + + Y+ + + PN TF S++
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSAETAKRSVDMYISMQRASFHPNISTFASVIG 281
Query: 61 ACSYSGLIEEGIKV 74
ACS E G +V
Sbjct: 282 ACSVLTCHEVGQQV 295
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE+IF +N+V W+ MI +A G + AL F +I + PN +T ++++
Sbjct: 265 VEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVIT 324
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--ETEPY------------ 106
+CS GL ++G ++F+ M F ++ EHY VDLL E + Y
Sbjct: 325 SCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 384
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
VWGALLGAC++H ++G + A+ F LDP++
Sbjct: 385 SVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 418
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +FG + ++NVV W+ ++ + + G+ E +EA Y + + G PN V+ + AC+
Sbjct: 66 ARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEA-YFGLREAGGLPNVVSACAFFNACA 124
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDLNL 88
+ + G + +V F++D+++
Sbjct: 125 GAMYLSLGEQFHGFVVKCGFEMDVSV 150
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ +N V W M+A++A +G E EA A YL S +P + S L C+
Sbjct: 167 ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAA-YLGARRSGEEPTDFMVSSALTTCA 225
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ ++FGG+ +++V W+ M+ + HG EA+E F ++ S +P+ V F++IL AC
Sbjct: 364 DSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR-SGIRPDRVVFMAILSAC 422
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S++GL++EG++ F +MV D+ + + E YG VDLL E+ P+ V
Sbjct: 423 SHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECV 482
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG LGAC+ H +G+L A L P Y L
Sbjct: 483 WGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVML 520
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + ++ V W+ +I+ H IHG +AL+ F + KP++VTF+S+L AC
Sbjct: 530 DAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFR-EMQDEGVKPDHVTFISLLSAC 588
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SGL++EG F +M ++ + +L+HYG VDLL + +
Sbjct: 589 SHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASI 647
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACRIH N+++G+ + F +D +N YY L
Sbjct: 648 WGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLL 685
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I K+VV W+ +I+ + +G EA+E + ++ C + K N T++SIL
Sbjct: 426 IDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILA 485
Query: 61 ACSYSGLIEEGIKV 74
A ++ G +++G+++
Sbjct: 486 AYAHVGALQQGMRI 499
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
F I K+V W+ MI+++ +G REA++ FY ++ + + + TF +L AC
Sbjct: 131 FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ 186
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F G+ +K+V+ WS I A HG+ REA++ F ++ PN +TF+ +L
Sbjct: 300 IEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLS 359
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++EG++ FD M ++ ++ ++EHYG VDLL +
Sbjct: 360 ACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDG 419
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+WG+LL ACR H +V + A+ L+P++
Sbjct: 420 KIWGSLLSACRSHSDVDTAVVAAERLVELEPED 452
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK VV W+ +++ + G A+E F + +P++V+ +++L
Sbjct: 199 MRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQ-MQMEGFEPDDVSIVAVLP 257
Query: 61 ACSYSGLIEEGIKVF 75
AC+ G +E G ++
Sbjct: 258 ACAQLGALELGRWIY 272
>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F ++ K++ W+ M+ +AI+G E + F +I S P+ +TF+++L CS
Sbjct: 391 SRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE-SGVAPDGITFVALLSGCS 449
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+GL E G+ +F+ M +F++ LEHY VD+L ET P+ +W
Sbjct: 450 DTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIW 509
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G+LL +CR+H NV +GE+ AK+ F L+P N Y
Sbjct: 510 GSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNY 543
>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
Length = 666
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 17/154 (11%)
Query: 4 AERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
AE F ++ +KN + W+ MI H IHG A+ F ++ + KP+++TF++++ AC
Sbjct: 444 AENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESMVR-EEVKPDHITFVALISAC 502
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S++GL+E+G++ F+ M ++ + E+YG VDLLA E P V
Sbjct: 503 SHAGLLEQGLRYFEEMSREYGIVPVEENYGTVVDLLARAGRFKEARDLIERMPIKPGANV 562
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
WGALLGACRIH NVK EL A L+PK+ +
Sbjct: 563 WGALLGACRIHGNVKEAELAAHCLQKLEPKDSGF 596
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I+DK VV+W+ +IAS+ + A+E F +I+ +PN VT S++ ACS
Sbjct: 235 ARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIY-EGMEPNCVTLSSLISACS 293
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F ++ +++V W+ +I+ +A HG EAL+ F ++ + +PN +TFLS+L
Sbjct: 357 IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK-AKVQPNEITFLSVLT 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGL++EG F++M +++ + H+ VDLL E P
Sbjct: 416 ACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTA 474
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACR+H N+ +G A+ F LDP
Sbjct: 475 AVWGALLGACRMHKNMDLGVYAAEQIFELDP 505
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A+ IF + KNVV W+ +IA HA G+ + F ++ +P + T+ S+L
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR-QGFEPTHFTYSSVL- 314
Query: 61 ACSYSGLIEEG 71
AC+ SG +E+G
Sbjct: 315 ACASSGSLEQG 325
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F + K++V W+ +I+ ++ GQ EAL F ++H +PN T S+L
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLK 214
Query: 61 A 61
A
Sbjct: 215 A 215
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A F I++K+VV W+ MI +A HG EAL F L + + +P++ T +S+L
Sbjct: 231 IDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFEL-MKTTGIRPDDATMVSVLA 289
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G + F M D+ + L HY VDLL E +
Sbjct: 290 ACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDA 349
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE A+ F ++P N Y L
Sbjct: 350 ATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILL 389
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K V W+ +I AIHG+ REAL+ ++ + + PN++TF +IL
Sbjct: 293 MEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALD-WFTQMQKAGINPNSITFTAILT 351
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL EEG +F+ M + + ++EHYG VDL+ E+ P
Sbjct: 352 ACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNA 411
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL AC++H + ++G+ + K LDP + Y L
Sbjct: 412 AIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHL 451
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +IF + +KNV+ W+ MI G +EAL ++ + KP+++T L
Sbjct: 192 LDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQML-VAGIKPDSITLSCSLS 250
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 251 ACAGLGALEQG 261
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++N+V W+ +I A+HG+ EA+ F ++ S P++V F+ +L
Sbjct: 166 VDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVR-SGVTPDDVVFIGLLS 224
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++G + FD M DF + +EHYG VD+L + P
Sbjct: 225 ACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNP 284
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW L+ ACR H +K+GE + + +P +++ Y L
Sbjct: 285 VVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLL 324
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + + V WS MI + G+ +A+ F + P+ +T +S+L AC+
Sbjct: 68 ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFR-EMQIKGVCPDEITMVSVLSACT 126
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
G +E G K + V ++ N+E +D+ A
Sbjct: 127 GLGALELG-KWVESYVEKERVQKNVELSNALIDMFA 161
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+ +F D+++V W+ MI+ +A HG +A+E F + S + + VTFL+++
Sbjct: 553 IDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ-MEASGIQMDGVTFLAVIM 611
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ET------EPY---- 106
C+++GL+ EG + FD MV D +++ +EHY VDL + ET P+
Sbjct: 612 GCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGA 671
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR+H NV++G+ A L+P + + Y L
Sbjct: 672 MVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLL 711
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ KNVV W+ ++ A H Q + A + + PN TF S+L A + G
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCA-HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215
Query: 67 LIEEGIKV 74
++ G +V
Sbjct: 216 ALDLGQRV 223
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA IF I K+VV WS M++ HA G + E + + KPN T S++ A
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAG-DCEGATYLFNKMAIQGIKPNEFTISSVIDA 510
Query: 62 CS 63
C+
Sbjct: 511 CA 512
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 17/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF--YLVIHCSDGKPNNVTFLSI 58
+++A +F K++ W+ MI A+HG+ EA+ F + ++ +D KP+++TF+ +
Sbjct: 311 LEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGL 370
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L AC++ GL+ +G FD+M + F ++ +EHYG +DLL +
Sbjct: 371 LNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKA 430
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
+ +WG+LL AC+IH ++ + E+ K+ L+P N Y
Sbjct: 431 DEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGY 468
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + +++V W+ ++A+ +G EA+ F +I+ +PN VT + +L
Sbjct: 209 ISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLS 268
Query: 61 ACSYSGLIE--EGIKVF--------DIMVHDFQLDL-----NLEHYGITVDLLATGETEP 105
AC+ +G ++ +GI F D+ V + +DL NLE + +
Sbjct: 269 ACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKM--ASKKSL 326
Query: 106 YVWGALLGACRIH 118
W +++ +H
Sbjct: 327 TAWNSMINCFALH 339
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFAC 62
A ++F + ++NVV W+ M++ +A G A+ F D +V ++ +IL AC
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALF------EDMPERDVPSWNAILAAC 234
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLN 87
+ +GL E + +F M+++ + N
Sbjct: 235 TQNGLFLEAVSLFRRMINEPSIRPN 259
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A+ +F D+++V W+ MI+ +A HG +A+E F + S + + VTFL+++
Sbjct: 553 IDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ-MEASGIQMDGVTFLAVIM 611
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ET------EPY---- 106
C+++GL+ EG + FD MV D +++ +EHY VDL + ET P+
Sbjct: 612 GCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGA 671
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR+H NV++G+ A L+P + + Y L
Sbjct: 672 MVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLL 711
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ KNVV W+ ++ A H Q + A + + PN TF S+L A + G
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCA-HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215
Query: 67 LIEEGIKV 74
++ G +V
Sbjct: 216 ALDLGQRV 223
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA IF I K+VV WS M++ HA G + E + + KPN T S++ A
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAG-DCEGATYLFNKMAIQGIKPNEFTISSVIDA 510
Query: 62 CS 63
C+
Sbjct: 511 CA 512
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +K+++ W+G+IA++A HG EA+ Y + + +PN+VT++ +L ACS
Sbjct: 378 ARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIH-LYEKMQGNGYRPNDVTYVVLLSACS 436
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL----------------LATGETEPYV 107
+SGL++EG+K+F+ MV+D + + EHY +DL L V
Sbjct: 437 HSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSV 496
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C H N IG L A++ +P N YT L
Sbjct: 497 WSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLL 534
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F G +++VV W+ +++++A G R+A F SD + N VT+ ++L
Sbjct: 58 DARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLF----DRSDARRNVVTWTALLSGY 113
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLN--LEHYGI 93
+ +GL++E +F M + N LE Y +
Sbjct: 114 ARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAV 146
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + ++NVV W+ M+ + + G++ E + + S +PN VTFL L ACS
Sbjct: 277 ARKLFDEMPERNVVTWTTMMNGY-LKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACS 335
Query: 64 YSGLIEEGIKVFDIMVHD-FQLD 85
+ EG +V ++ FQ+D
Sbjct: 336 DLATLCEGKQVHQMICKTAFQVD 358
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D + ++F + ++NVV W+ +I A+HG+ REAL+ FY + S KP+ F+ +L
Sbjct: 233 IDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKE-SGLKPDGALFIGVLV 291
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+E+G +VF+ M +F + LEHYG VDLL +
Sbjct: 292 ACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPNS 351
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGAC H+++ + E + LDP +D Y L
Sbjct: 352 VIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLL 391
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 7 IFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
+F GI +++ W+ MI + A+HG RE L F+ + + KP+ +TF+ ++ AC++
Sbjct: 275 VFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFH-KLRMTGAKPDGITFVGVILACTHG 333
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGA 110
GL++EG +F+ M +F L +EHYG VDLL E + +WGA
Sbjct: 334 GLVDEGKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGA 393
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
LLGAC H N+++ E+ + L+P+N A
Sbjct: 394 LLGACSFHGNLELAEVAVEKLMRLEPQNTA 423
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDAE +F G+ D+NV+ W+ M++ +A +G+ EA+ F + +PN VT S+L
Sbjct: 167 VDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLP 226
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G KV
Sbjct: 227 ACAAVGALALGRKV 240
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF G+ +K+ W+ +I A++G+ +ALE F ++ + KP+++TF+ +L
Sbjct: 416 IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQ-TGVKPDDITFIGVLS 474
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPYV--- 107
ACS+ GL+EEG K F M +Q++ LEHYG +DLL E P V
Sbjct: 475 ACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNE 534
Query: 108 -----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+GALL ACR H NV++GE VAK ++ + + +T L
Sbjct: 535 VIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLL 577
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + KNV+ W+ MI A+HG+ EA+ F + S +P+++ F+ +L AC+++G
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFA-QMESSGIRPDDIAFIGVLCACTHAG 324
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L+++G ++FD MV + + +EHYG VDLLA E + +WGAL
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGAL 384
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ CR H NV+ E VAK L+P Y L
Sbjct: 385 MAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLL 418
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F + +N V WS M+ + G REAL F + D +P++ + +L
Sbjct: 159 LADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFAR-MQAEDVRPDDTVLVGVLA 217
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 218 ACAQHGALEQG 228
>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
Length = 434
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F I +KN++ WS MI + +G AL+AF L ++ P+ VTF SIL
Sbjct: 112 LDDATIVFSSIRNKNLISWSTMITAFVQNGHTDRALDAF-LAMNVDGLFPDAVTFKSILS 170
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPYV--- 107
ACS++GL E G FD++VHDF + ++H+ VDLL +T P+V
Sbjct: 171 ACSHAGLFEHGFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDD 230
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LL ACR+H +V+ G+ A+ L + YY L
Sbjct: 231 VTWNTLLAACRVHKSVERGKRAAEVLLELTSEIPGYYVLL 270
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + +++V W+ M+ + A +G +EA+ F + C + N +TFLS+L
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI-QLNQITFLSVLT 268
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG FD+M D+ + ++HY VDLL E
Sbjct: 269 ACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 327
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACR+H N K+G+ A F LDP
Sbjct: 328 AVWGALLGACRMHKNAKMGQYAADHVFELDP 358
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + K+V+ W+ +IA AI G +EA + F + + +PN++TF+++L ACS
Sbjct: 89 ATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKE-AGVEPNDITFVAMLSACS 147
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+++EG K+ D M + ++ +EHYG +DLLA E P
Sbjct: 148 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCAL 207
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIH N ++GE+V K +L P + Y L
Sbjct: 208 GALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 244
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 16/143 (11%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF + ++V W+ MI + +HG+ EA+ F+ + + +PN++TFL +L CS+ G
Sbjct: 659 IFNSMPKRDVFTWNSMIVGYGVHGRGDEAI-TFFGSMLMAGVRPNSITFLGLLCGCSHQG 717
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL---------------ATGETEPYVWGAL 111
L++EG++ F +M +F L ++HYG VDL + + +P +W L
Sbjct: 718 LVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTL 777
Query: 112 LGACRIHHNVKIGELVAKDPFHL 134
LG+C+IH NV+IGE+ ++ L
Sbjct: 778 LGSCKIHRNVEIGEMAMRNLVQL 800
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + D+++ W+ +I A+HG + A+ F + +P+ +TF+ +L
Sbjct: 243 LEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFN-EMRGEGVEPDVITFVGLLN 301
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ G ++EGIK F++M H+ ++ +EHYG ++LL E++
Sbjct: 302 ACTHGGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLGRAGRFQDALNVISNMRIESDE 361
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR+H NV++ EL + LDP N Y L
Sbjct: 362 VIWGSLLNACRVHRNVELAELAIRKLLELDPNNANYVVML 401
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F G+ +++VV W+ +++ +A G+ +A+ F + + + + +I+
Sbjct: 111 MADARKLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERMT-----ERDVAAWNAIIT 165
Query: 61 ACSYSGLIEEGIKVFDIMV 79
CS + L E + +F MV
Sbjct: 166 GCSQNRLFAEAVGIFGRMV 184
>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 502
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
++E++F + N+V W+ MI+ + HG+ ++L F + C +PN+VT +IL +C
Sbjct: 263 NSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGI-QPNSVTLTAILASC 321
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
S++G I EG ++F ++ D +++ +EHY VDLL+ + +
Sbjct: 322 SHAGYINEGWRIFQSIISDNKVEPTVEHYACAVDLLSRFGFLKEAFLLIRNMKVKAAASI 381
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL C IH N++ GE+ A F L+P N + + +L
Sbjct: 382 WGALLSGCMIHRNLEFGEIAANQLFKLEPTNPSNFIAL 419
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + +++V W+ M+ + A +G +EA+ F + C + N +TFLS+L
Sbjct: 313 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI-QLNQITFLSVLT 371
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++EG FD+M D+ + ++HY VDLL E
Sbjct: 372 ACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 430
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACR+H N K+G+ A F LDP
Sbjct: 431 AVWGALLGACRMHKNAKMGQYAADHVFELDP 461
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 17/147 (11%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
K+VV W+ +I+ + +HG EA++ F + PN +TF+S+L ACS++GL++EG +
Sbjct: 353 KDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGV-SPNIITFISVLGACSHAGLVDEGKR 411
Query: 74 VFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIH 118
+F+ MV D+ + EHY VDLL P VWG+LLGACRIH
Sbjct: 412 LFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIH 470
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V+ E+ F L+P+N Y L
Sbjct: 471 RHVEYAEMACSQLFDLEPRNAGNYVLL 497
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFA 61
AE +F + ++NVV W+ MI +A + + +A+ F +V D PN+VT + IL A
Sbjct: 239 AESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHA 297
>gi|255580953|ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529128|gb|EEF31108.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 313
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 16/155 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A + F + KN + W+ M AIHG+ +E LE + S KPN VTF S+
Sbjct: 101 LDSAVKFFVEMKLKNKLTWTAMATGLAIHGKGKETLELLD-GMGASGIKPNAVTFTSLFS 159
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC +SGL+EEG+ +F M F ++ ++HYG VDLL G E +
Sbjct: 160 ACCHSGLVEEGLHLFHNMKGKFGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDA 219
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
+W LL AC++H +V +GE VAK HL P+ ++
Sbjct: 220 ILWRCLLSACKVHGDVVMGEKVAKILLHLQPEKNS 254
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+RIFG I +KN+V + M+ A+HGQ EA+ F+ + S KP+++TF ++L
Sbjct: 529 LTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWR-SGLKPDSITFTALLT 587
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC GLI EG + FD M + + E+Y VDLLA E P
Sbjct: 588 ACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGA 647
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL C IH N+ + E+ A++ F L+P N A Y
Sbjct: 648 SLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANY 684
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+D A R+F + +N+ W+ ++A HA GQ ALE LV + PN T+ +
Sbjct: 358 LDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALE---LVERMKRNRLDPNVTTWNGL 414
Query: 59 LFACSYSGLIEEGI 72
+ S +GL + +
Sbjct: 415 ITGYSLNGLSSQAM 428
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F I +K + W+ M+ +AI+G E F + C G +P+ +TF ++L C
Sbjct: 593 AHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNM--CKTGIRPDAITFTALLSGC 650
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
SGL+ +G K FD M D+ ++ +EHY VDLL + + +
Sbjct: 651 KNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASI 710
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGA+L ACR+H ++KI E+ A++ F L+P N A Y
Sbjct: 711 WGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANY 745
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + K+V W+ MI A+ G +L F +I S +PN VTFL +L
Sbjct: 357 VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIR-SRVQPNGVTFLGVLS 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL++EG+++F +M+ D++L+ N++HYG VDLL E P
Sbjct: 416 ACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL C IH ++GE + L P + Y L
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILL 515
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + +N+V W +IA + + +EAL+ F +I +PN T S L A
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI-IEGIEPNQSTVTSALTA 315
Query: 62 CSYSGLIEEG 71
C+ G +++G
Sbjct: 316 CAQLGSLDQG 325
>gi|297800494|ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313967|gb|EFH44390.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 16/156 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D ++F + +NVV W+ +++ + HG+ E L+ F + +PN VTFL +L A
Sbjct: 244 SDGHKVFDQLSTRNVVTWTSLMSGYGYHGKVSEVLKCFEKMKE-EGCRPNPVTFLVVLTA 302
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------- 106
C++ GL+++G + F+ M D+ ++ +HY VD L A E Y
Sbjct: 303 CNHGGLVDKGWEHFNSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHAP 362
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH NVK+ EL A LDP N Y
Sbjct: 363 VWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNY 398
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F GI ++V W+ MI +A+HG EA F + + KPN++TFL++L
Sbjct: 322 VDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER-MELGNVKPNHITFLAVLT 380
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++ G K F+ M + + +LEH D L +
Sbjct: 381 ACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTS 440
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VW LL ACR+H N + E VAK F L+PK+
Sbjct: 441 SVWSTLLRACRVHKNTVLAEEVAKKIFELEPKS 473
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD + ++F D + V+W+ M+A +A +G EAL F ++ + +P VTF S++
Sbjct: 221 MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQ-AGVRPVPVTFSSLIP 279
Query: 61 ACSYSGLIEEGIKV 74
A L+ G ++
Sbjct: 280 AFGNLSLLRLGKQL 293
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + K+V W+ MI A+ G +L F +I S +PN VTFL +L
Sbjct: 357 VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIR-SRVQPNGVTFLGVLS 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL++EG+++F +M+ D++L+ N++HYG VDLL E P
Sbjct: 416 ACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL C IH ++GE + L P + Y L
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILL 515
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + +N+V W +IA + + +EAL+ F +I +PN T S L A
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI-IEGIEPNQSTVTSALTA 315
Query: 62 CSYSGLIEEG 71
C+ G +++G
Sbjct: 316 CAQLGSLDQG 325
>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 17/148 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +F ++KN V ++ MI+S+ HG AL F+ ++ S KP++VTF++IL ACS
Sbjct: 579 AENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLG-SGIKPDSVTFVAILSACS 637
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY--------------V 107
Y+GL++EG+++F M ++++ + EHY D+L G E Y +
Sbjct: 638 YAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGI 697
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLD 135
WG+LLGACRIH ++G++VA ++
Sbjct: 698 WGSLLGACRIHGEFELGKVVANKLLEME 725
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
D++ W+ MIA + +G E F +I + +PN VT SIL AC+ G I G
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGK 545
Query: 73 KVFDIMVHDF 82
++ + F
Sbjct: 546 QIHGFAIRCF 555
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF +++N +W+ MI + + EA++ F V+ ++VTFLS L
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALT 330
Query: 61 ACSYSGLIEEGIKV 74
A S +E G ++
Sbjct: 331 AISQLQWLELGRQL 344
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F +++KN V W+ ++ + +HG EAL F + K + VT L +L+AC
Sbjct: 531 DARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG-FKLDGVTLLVVLYAC 589
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S+SG+I++G++ F+ M DF + EHY VDLL E P V
Sbjct: 590 SHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL CRIH V++GE AK L ND YT L
Sbjct: 650 WVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLL 687
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+DA R+F + I +VV WS I+ +A G EAL ++ S KPN VT +S
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS-SGIKPNEVTLIS 370
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92
+L C+ G + G ++ + + +DL +G
Sbjct: 371 VLSGCASVGALMHGKEIHCYAI-KYPMDLRKNGHG 404
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + +VV W+ +I S+A G+ + ALE F + + +P+++T +++L
Sbjct: 178 LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237
Query: 61 ACSYSG 66
C+ G
Sbjct: 238 PCASVG 243
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+F G+ K+++ W+ M+ A +G EA F ++ CS P++VT L++L
Sbjct: 294 LEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMV-CSGVVPDSVTLLALLV 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--ATGETEPY------------ 106
A ++ GL++EGI++F+ M D+ ++ +EHYG +D+L A E Y
Sbjct: 353 AYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYDLLTNIPIPCND 412
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACRIH +V++GE + K L P YY L
Sbjct: 413 AVWGALLGACRIHGDVEMGEKLIKKLLELKPDEGGYYILL 452
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + ++VV W+ M+ ++ + REALE F + S P+ VT +S++
Sbjct: 193 LEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFG-EMRRSGVWPDEVTMVSLVS 251
Query: 61 ACSYSGLIEEGIKVFDIMVHDF 82
AC+ G +E G +MVH F
Sbjct: 252 ACASLGDMETG-----MMVHRF 268
>gi|302796432|ref|XP_002979978.1| hypothetical protein SELMODRAFT_111951 [Selaginella moellendorffii]
gi|300152205|gb|EFJ18848.1| hypothetical protein SELMODRAFT_111951 [Selaginella moellendorffii]
Length = 195
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++++ RIF + ++VV W+ MI+S+A G+ E+LE F+L + KP++VTF SIL
Sbjct: 22 LEESRRIFDEMPFRDVVCWNSMISSYAGSGRGEESLEVFHL-MDLDGTKPDHVTFSSILT 80
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETE------PYV--- 107
ACS+ GL+ G ++F ++ D + EHY +D+LA GE E P+V
Sbjct: 81 ACSHLGLLNSGWRMFVVLAVDHGVPPRQEHYASMIDILARLGKLGEAEELVKSMPFVPDL 140
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGA R+H N K+G AK HL K + + L
Sbjct: 141 QEWATLLGASRVHRNKKLGMEAAKSAIHLGTKTSSTFVLL 180
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + IF G+ +K+ W+ +I A++G+ +ALE F ++ + KP+++TF+ +L
Sbjct: 325 IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQ-TGVKPDDITFIGVLS 383
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPYV--- 107
ACS+ GL+EEG K F M +Q++ LEHYG +DLL E P V
Sbjct: 384 ACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNE 443
Query: 108 -----WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+GALL ACR H NV++GE VAK ++ + + +T L
Sbjct: 444 VIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLL 486
>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
Length = 567
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
++E +F + K++V W+ +IA++A HG+ ++ + F+ + + P+++TFLS+L AC
Sbjct: 323 ESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFH-EMEVTGLIPDDITFLSVLSAC 381
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+ G+++ +K+FD+M + + EHY VD+L+ + E V
Sbjct: 382 GHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNV 441
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LLGAC+IH NV++GEL AK D ++ Y L
Sbjct: 442 WGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVIL 479
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F GI K+V+ W+ MIA + +G EA+ L+ KP++ T +++L
Sbjct: 220 VDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFR-EGVKPDHATLIAVLT 278
Query: 61 ACSYSGLIEEG 71
ACS L+ +G
Sbjct: 279 ACSALALLRQG 289
>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
M+D+ +F ++D +NVV W+ +++ A +G+ +EA++ FY + + KPN VTFLS+L
Sbjct: 278 MEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAID-FYQRMILAGCKPNAVTFLSLL 336
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV-------- 107
+AC+++GL++EG F+ D L EHY VDLL+ E ++
Sbjct: 337 WACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPG 396
Query: 108 ---WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C+IH NV++GEL A+ LDP + + Y +
Sbjct: 397 IGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMM 437
>gi|76556518|emb|CAJ32535.1| pentatricopeptide repeat-containing protein [Hordeum vulgare subsp.
vulgare]
Length = 652
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A+++F + K++V W+ +I + +HG A+ F ++ S G +P+NV+ +++L
Sbjct: 327 LPQAQQLFDEMPRKSIVSWTALITGYGMHGHGDIAINFFQRMV--SQGIRPDNVSMVALL 384
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEP------------- 105
ACS++G EEG K F M ++L LEHY VDLL G E
Sbjct: 385 SACSHAGKYEEGCKYFFAMESTYKLRPTLEHYACMVDLLGRAGRLEEARELISSMPMPAD 444
Query: 106 -YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALLGAC+IH NV+ GE K L+P N YY
Sbjct: 445 GSVWGALLGACKIHKNVEAGEEAFKHVIMLEPSNVGYY 482
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 16/149 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF + ++V W+ MI + +HG+ EA+ F+ + + +PN++TFL +L
Sbjct: 278 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAI-TFFGSMLMAGVRPNSITFLGLLC 336
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL---------------ATGETEP 105
CS+ GL++EG++ F +M +F L ++HYG VDL + + +P
Sbjct: 337 GCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDP 396
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL 134
+W LLG+C+IH NV+IGE+ ++ L
Sbjct: 397 VLWRTLLGSCKIHRNVEIGEMAMRNLVQL 425
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + NV W+ MI+++ HG ++A++ F + PNNVTF+++L AC+
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACA 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-----------------ATGE-TEP 105
++GL+E+G V+ M ++L +EH+ VD+L ATG T P
Sbjct: 322 HAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAP 381
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W A+LGAC++H N +G +AK L+P+N ++ L
Sbjct: 382 ALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVML 421
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A ++F + +K+VV W+ +++ +G +A+ FY + S +P++ TF+S+L
Sbjct: 158 MEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRE-SGFEPDSATFVSLLS 216
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC+ +G I G V +V + LD+N++
Sbjct: 217 ACAQTGAISLGSWVHQYIVSE-GLDVNVK 244
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +D+++V W+ MI+ +A HG +++L+ F + + + + +TF+ ++
Sbjct: 545 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE-EMRSKNLELDGITFIGVIS 603
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+ EG + FD+MV D+ + +EHY VDL + P+
Sbjct: 604 ACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGA 663
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL ACR+H NV++GEL A+ L P++ A Y L
Sbjct: 664 TIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 703
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D ER+F + KNVV W+ ++A + +G +AL+ F + KPN TF ++L
Sbjct: 143 VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ-MQLEGIKPNPFTFAAVLG 201
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
+ G +E+G++V +++
Sbjct: 202 GLAADGAVEKGVQVHTMVIKS 222
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
++A +IF I +K++V WS M++ +A G A++ F L + +PN TF S+L A
Sbjct: 444 NEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIF-LQLAKEGVEPNEFTFSSVLNA 502
Query: 62 CSY-SGLIEEG 71
C+ + +E+G
Sbjct: 503 CAAPTASVEQG 513
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY 40
+ DA+ +F + ++N V W+ MIA +G + EA E FY
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
M DA ++FG + ++VV W+ MI A +GQ R+ALE F + ++GK PN +TF+ +L
Sbjct: 401 MGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMR--AEGKAPNYITFICVL 458
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
+ACS GLI EG + F M D + +HY VD+L +
Sbjct: 459 YACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQAS 518
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGACR+H +V+ G L AK LD + + Y L
Sbjct: 519 VLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVL 559
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +IF ++ K+V W+ MI++H+ HG+ ALE FY ++ S PN+VTFL +L
Sbjct: 286 VESAMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLE-SGVIPNDVTFLLVLS 344
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS+SGL+ E K+F+ M+ + + +EHYG VDLL + +
Sbjct: 345 GCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNMPMDPDA 404
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL AC N+ + E+ K L+P +D Y L
Sbjct: 405 VIWRSLLSACMNQRNLGLAEIAGKKIIELEPHDDGVYVLL 444
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F + +N V W+ MI + G LE F + + +P +T +++L
Sbjct: 184 LESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLS 243
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95
C+ G + G VH + +NL+ G+TV
Sbjct: 244 GCADLGAHDHGQA-----VHGYISKVNLDK-GVTV 272
>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
M+D+ +F ++D +NVV W+ +++ A +G+ +EA++ FY + + KPN VTFLS+L
Sbjct: 278 MEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAID-FYQRMILAGCKPNAVTFLSLL 336
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPYV-------- 107
+AC+++GL++EG F+ D L EHY VDLL+ E ++
Sbjct: 337 WACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPG 396
Query: 108 ---WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C+IH NV++GEL A+ LDP + + Y +
Sbjct: 397 IGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMM 437
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + KN+ W+ +I A HG +EAL+ F + KPN VTF+S+
Sbjct: 1083 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF-AKMEMESVKPNAVTFVSVFT 1141
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV-------------DLLATGETEP-- 105
AC+++GL++EG +++ M+ D+ + N+EHYG V +L+ E EP
Sbjct: 1142 ACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNA 1201
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL CRIH N+ I E+ L+P N YY
Sbjct: 1202 VIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYY 1238
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ AE +F + K+++ W+ MI ++ + + REA+ FY ++ +G P+ VT +++
Sbjct: 982 LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME--EGIIPDEVTMSTVI 1039
Query: 60 FACSYSGLIEEGIKV 74
AC++ G++E G +V
Sbjct: 1040 SACAHLGVLEIGKEV 1054
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +K+VV W+ MI + IHG +ALE F + PN+ TF+S+L
Sbjct: 403 MDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFR-EMEKGGPMPNDATFMSVLS 461
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SG++ G FD+M +++ EHYG VDLL E EP
Sbjct: 462 ACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEP 521
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
+WG LL ACR H + GE++AK L P
Sbjct: 522 TLWGDLLSACRAHCISEPGEILAKQLIKLFP 552
>gi|341606131|gb|AEK83168.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGVKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +D+++V W+ MI+ +A HG +++L+ F + + + + +TF+ ++
Sbjct: 449 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE-EMRSKNLELDGITFIGVIS 507
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+ EG + FD+MV D+ + +EHY VDL + P+
Sbjct: 508 ACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGA 567
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL ACR+H NV++GEL A+ L P++ A Y L
Sbjct: 568 TIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 607
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D ER+F + KNVV W+ ++A + +G +AL+ F + KPN TF ++L
Sbjct: 143 VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ-MQLEGIKPNPFTFAAVLG 201
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+ G +E+G++V +++
Sbjct: 202 GLAADGAVEKGVQVHTMVI 220
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 1 MDDAERIFG---GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
+DDA ++F G+ +NVV W+ +I+ + +G+ A+ F + +PN TF S
Sbjct: 345 IDDAFKLFCMMHGV--QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402
Query: 58 ILFACSY-SGLIEEG 71
+L AC+ + +E+G
Sbjct: 403 VLNACAAPTASVEQG 417
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY 40
+ DA+ +F + ++N V W+ MIA +G + EA E FY
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283
>gi|341606135|gb|AEK83170.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASXAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ IF I K++V WS MI + ++G EALE F ++ C KPN V F+S+L
Sbjct: 363 INQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGV-KPNEVVFISVLS 421
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL EG F M + + L HY VDL++ E +
Sbjct: 422 ACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDK 481
Query: 106 YVWGALLGACR-IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL CR H +++I ELVA+ LDP+N +YY L
Sbjct: 482 RIWGALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVIL 522
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + K+ + WS MI+ HA ALE F + +D +PN +TF+S+L
Sbjct: 262 LESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQ-MQSTDERPNEITFVSLLQ 320
Query: 61 ACSYSGLIEEG 71
ACS G E G
Sbjct: 321 ACSLIGAQELG 331
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSY 64
+IF K++V+WS M+++ GQ EA E F + + DG +PN+V+ +SIL AC+
Sbjct: 65 KIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQY--DGVEPNHVSIVSILPACAN 122
Query: 65 SGLIEEGIKVFDIMVHDFQLD 85
G + +F +H F +
Sbjct: 123 VGAL-----LFGKEIHGFSIK 138
>gi|308080542|ref|NP_001183145.1| uncharacterized protein LOC100501514 [Zea mays]
gi|238009628|gb|ACR35849.1| unknown [Zea mays]
Length = 332
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 16/138 (11%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R GG D++VV W+ MI +A+HG+ REALEAF + P ++TF+ +L ACS+S
Sbjct: 16 RDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQ-LRAQGLWPTDITFIGVLNACSHS 74
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVWGA 110
GL++EG + M ++ + +EHYG VDLL + + +W +
Sbjct: 75 GLVDEGRALLAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVRSMKAKPDAAMWAS 134
Query: 111 LLGACRIHHNVKIGELVA 128
LLGACR+H N+ +G+ VA
Sbjct: 135 LLGACRLHKNLALGQRVA 152
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + K++ W+ +I+ + HG + AL+ F ++ KPN VTF+ +L
Sbjct: 292 IEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML-VEGFKPNEVTFVCVLS 350
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS +GL++EG ++F++MVH + +EHYG VDLL +
Sbjct: 351 ACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEAS 410
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LLGACR H NV++ E VA+ L P+ + + L
Sbjct: 411 VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQL 450
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+FG KNVV W+ MI ++ G+ E L F + H + KP+N T +S+L AC+
Sbjct: 194 SRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQH-AGVKPDNCTLVSVLSACA 252
Query: 64 YSGLIEEG 71
+ G + +G
Sbjct: 253 HVGALSQG 260
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F +DK+V +W+ MI+ A +G EALE F + PN VT L++L ACS+SG
Sbjct: 413 VFEKALDKDVTLWTAMISGLAFNGHGTEALELF-CKMQTEVVAPNGVTLLAVLSACSHSG 471
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L++EG K+FD M + ++ +EH+G VDLLA +WG++
Sbjct: 472 LLDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLARSGRLIDALALARRMPMRPSRSIWGSI 531
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L A N+++ E+ +K+ LDP + Y L
Sbjct: 532 LNASLAGQNIEVAEIASKELLRLDPAEEGGYVLL 565
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 16/149 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF + ++V W+ MI + +HG+ EA+ F+ + + +PN++TFL +L
Sbjct: 260 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAI-TFFGSMLMAGVRPNSITFLGLLC 318
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL---------------ATGETEP 105
CS+ GL++EG++ F +M +F L ++HYG VDL + + +P
Sbjct: 319 GCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDP 378
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL 134
+W LLG+C+IH NV+IGE+ ++ L
Sbjct: 379 VLWRTLLGSCKIHRNVEIGEMAMRNLVQL 407
>gi|404356761|gb|AFR63373.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356767|gb|AFR63376.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356771|gb|AFR63378.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356775|gb|AFR63380.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356779|gb|AFR63382.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356803|gb|AFR63394.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356805|gb|AFR63395.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356807|gb|AFR63396.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356811|gb|AFR63398.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356829|gb|AFR63407.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
Length = 204
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 29 IEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKE-KGFKPDKVTFVGVLS 87
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG + MV D+ ++ HY VD L +++
Sbjct: 88 ACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKSDA 147
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+I+ +V++G+L AK L+P + Y SL
Sbjct: 148 LVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSL 187
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 20/161 (12%)
Query: 3 DAERIFGGIIDKN---VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
A +F I+ ++ VV W+ MI +A+HG EAL+ F + + KP+++TF+ +L
Sbjct: 229 SAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA--KPDHITFVGVL 286
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGET-EPY----------- 106
ACS+ GL+EEG F+ M+ D+++D ++HY VDLL +G E Y
Sbjct: 287 SACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPD 346
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL +C+IH NV++GE+ + L+P + Y L
Sbjct: 347 SGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVIL 387
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F I D + V W+ +IA +A G EAL+ F + C +PN VTF+++L
Sbjct: 364 LDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGV-RPNAVTFIAVLT 422
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGL+ EG + + M ++ + ++HY VD+ + + P+
Sbjct: 423 ACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDA 482
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W LLG C + N++IGEL A++ F LDP++ A Y
Sbjct: 483 MSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGY 519
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ ++F + ++++ W+ I A HG REA++ Y + PN VTF+ +L AC
Sbjct: 602 DSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIK-MYEHMESVGVLPNEVTFVGLLNAC 660
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG--------------ETEPYV 107
S++GL++EG + F M D+ L LEHY VDLL TG E + +
Sbjct: 661 SHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVI 720
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+IH N +IG A+ F +P N Y L
Sbjct: 721 WSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVML 758
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ +F + +N + W+GMIA +A +G+ EAL+ +H + P+ + S
Sbjct: 368 VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQ-ALHRNGMLPSLSSLTSSFL 426
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS+ G +E G +V + V
Sbjct: 427 ACSHIGALETGRQVHSLAV 445
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA IF ++ ++VV W+ +I+++A + EA+E F ++H + KPN+ +L
Sbjct: 500 LEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILLS 558
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C G + G ++ + +
Sbjct: 559 VCGGLGSAKLGQQIHTVAI 577
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + K++ W+ +I+ + HG + AL+ F ++ KPN VTF+ +L
Sbjct: 322 IEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML-VEGFKPNEVTFVCVLS 380
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS +GL++EG ++F++MVH + +EHYG VDLL +
Sbjct: 381 ACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEAS 440
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW +LLGACR H NV++ E VA+ L P+ + + L
Sbjct: 441 VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQL 480
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A R+FG KNVV W+ MI ++ G+ E L F + H + KP+N T +S+L
Sbjct: 221 LEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQH-AGVKPDNCTLVSVLS 279
Query: 61 ACSYSGLIEEG 71
AC++ G + +G
Sbjct: 280 ACAHVGALSQG 290
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A ++F + + +V W+ MI ++ IHG EAL F + S+G KP++VTF+ ++
Sbjct: 477 IDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQ--SEGLKPDDVTFICLI 534
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL+ EG F+ M DF + +EHY VDLL+ E +
Sbjct: 535 SACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPD 594
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACR++ NV++GE V+K L P++ + L
Sbjct: 595 VRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLL 635
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
KNVV+W+ +I ++A +G EA++ +Y ++ PN TF +L ACS EG +
Sbjct: 82 KNVVLWNLLIRAYAWNGPYEEAIDLYYKMLG-YGITPNRFTFPFVLKACSALKEASEGRE 140
Query: 74 V 74
+
Sbjct: 141 I 141
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 17/154 (11%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67
F + ++NVV W+ MIA + +HG EA++ F+L + PN+VTF+++L AC+++GL
Sbjct: 268 FDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHL-MRLEGPTPNDVTFVAVLAACAHAGL 326
Query: 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETEPYVWGAL 111
+ EG FD M + L EHY VD+ GE P VW A+
Sbjct: 327 VNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAM 386
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGAC++H N +G VA+ L+P+N ++ L
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLL 420
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I D++VV W+ MI+ + +G A+E Y + + P++ TF++ L AC+
Sbjct: 163 ARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIE-VYREMQVAQVVPDSATFVTTLSACA 221
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNL 88
+G ++ G +V +V D Q+D+++
Sbjct: 222 QAGALDLGREVERRIVSD-QMDVSV 245
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 18/155 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A+++F + K++V W+ +I H +HG A+ F ++ S+G P+NV + +L AC
Sbjct: 736 AQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMV--SEGIHPDNVAMVGVLSAC 793
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPY--------------V 107
S++GL +EG F M ++L LEHY VDLL G E V
Sbjct: 794 SHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAV 853
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
WGALLGAC+IH NV+IGE L+P+N YY
Sbjct: 854 WGALLGACKIHKNVEIGEEAFARVVELEPRNVGYY 888
>gi|302773103|ref|XP_002969969.1| hypothetical protein SELMODRAFT_92492 [Selaginella moellendorffii]
gi|300162480|gb|EFJ29093.1| hypothetical protein SELMODRAFT_92492 [Selaginella moellendorffii]
Length = 331
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 16/161 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD-GKPNNVTFLSIL 59
+D+A ++F D++V +W+ MIA++A +GQ +L+ F + ++ +PN +TF+ +L
Sbjct: 8 VDEARQVFEAFPDRDVALWNSMIAAYAQNGQGEMSLQVFERMKEATNNARPNAITFVHVL 67
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++ LIE G F M F + + +HY +DLL E +
Sbjct: 68 CACSHARLIERGRSYFGSMETVFGIQPSSQHYRCMIDLLGRSGNLDQAWNILHSMPLEPD 127
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +L ACR H NV++GEL A+ F ++P+ A Y L
Sbjct: 128 SLAWTTMLSACRAHSNVELGELCAERLFEMEPEYSAPYVLL 168
>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
Length = 717
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 525 IEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKE-KGFKPDKVTFVGVLS 583
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS+ GL+EEG + MV D+ ++ HY VD L T P
Sbjct: 584 ACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDA 643
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+I+ +V++G+L AK L+P + Y SL
Sbjct: 644 LVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSL 683
>gi|449434032|ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
gi|449526397|ref|XP_004170200.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
Length = 486
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D + F ++NV+ W+ +I+ + HG+ E LE+F+ +I+ +PN VTFL++L
Sbjct: 240 LSDGHKAFNKSSNRNVITWTALISGYGQHGRISEVLESFHSMIN-KGYRPNYVTFLAVLA 298
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS G + E F +M + ++ +HY DLLA +
Sbjct: 299 ACSRGGFVSEAWNYFSLMTKTYGIEPRGQHYAAMADLLARAGRLQEAYDFVLDAPCKEHS 358
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
+WGAL+GAC++H +V + + VA F LDPKN
Sbjct: 359 VMWGALVGACKVHEDVDLMKHVAASYFELDPKNS 392
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE 70
+++K++V W+ +IA + G LE FYL + S P+ TF S+L AC+ +E
Sbjct: 149 LLEKSLVSWNSLIAGYVQKGLAEVGLE-FYLKMRQSGLMPDQYTFASVLRACASLASLEH 207
Query: 71 GIKVFDIMV 79
G + +++
Sbjct: 208 GKRAHGVLI 216
>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
Length = 767
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA+R F + +NV+ W+ +I + +G +A+ F ++ DG +PN+VTFLS+L A
Sbjct: 577 DAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVE--DGVRPNDVTFLSLLSA 634
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW------------- 108
C + GL +G++ F M+ + +D EHY +DLLA G W
Sbjct: 635 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSS 694
Query: 109 --GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC++H N+ +GE AK+ F +DP + Y L
Sbjct: 695 MLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVL 733
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF 55
A ++F G+ ++VV W+ M++ +A +G+ REALE F L + S +PN T+
Sbjct: 112 ARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFAL-MRASGARPNQFTY 162
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF 55
+++V W+ M++ +A +G+ REALE F L + S +PN T+
Sbjct: 284 RSLVSWTAMVSGYARNGRPREALELFAL-MRASGARPNQFTY 324
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + ++NV W+ MIA A++G +EAL F+ + PN +TF+++L C
Sbjct: 327 DAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFW-KMQFVGPSPNAITFIALLTGC 385
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
S+SGLI EG +F +M + + L+HYG VDLL E P +
Sbjct: 386 SHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSEL 445
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL+GACRIH V++GE + K L+P + Y L
Sbjct: 446 WGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALL 483
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + D++ WS M++ ++ G EAL+ F ++ PN +S +
Sbjct: 223 INEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVS 282
Query: 61 ACSYSGLIEEG 71
AC+ +EEG
Sbjct: 283 ACAQLRALEEG 293
>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Glycine max]
Length = 714
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D AE+IF I D +V W+ +I+ ++++G E +A F + +P+ +TFL +L
Sbjct: 492 LDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQE-QGLEPDKITFLGVLA 550
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC++ GL+ G++ F IM ++ L L+HY V LL E P
Sbjct: 551 ACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNMEIRPDS 610
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC I VK+GE +AK+ F L+ KN +Y SL
Sbjct: 611 AVWGALLSACWIQQEVKLGECLAKNLFLLNYKNGGFYVSL 650
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +VV W+ +I ++ HG +AL+ F ++ +PN T S+L +C
Sbjct: 97 ARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLR-ESFRPNQTTIASLLPSCG 155
Query: 64 YSGLIEEGIKVFDIMVH-----DFQLDLNLEH-YGITVDLLAT-------GETEPYVWGA 110
L +G V + D QL L Y DL A+ GE W
Sbjct: 156 RRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQLLFQEMGEKNVISWNT 215
Query: 111 LLGA 114
++GA
Sbjct: 216 MIGA 219
>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
Length = 867
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +IF +DK++V+++ MI +A+HG +ALE F +++ KP++V F SIL ACS
Sbjct: 639 AYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFSHMLNMGI-KPDHVIFTSILSACS 697
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G I EG+K+FD + + +E + VDLLA G E +W
Sbjct: 698 HAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIW 757
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G LLGAC+ +H V++G +VA F ++ + Y L
Sbjct: 758 GTLLGACKTYHEVELGRIVADKLFKIEANDIGNYIVL 794
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F II K+VV W+ MIA A +G +EA F L++ S KPN T +IL C
Sbjct: 194 DAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGS-VKPNYATVANILPVC 252
Query: 63 S 63
+
Sbjct: 253 A 253
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA IF G+ + ++ W+ M+ +A + +ALE F L + KP+ VT +S++ C
Sbjct: 538 DANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELF-LKLQTQGMKPDVVTIMSLIPVC 596
Query: 63 S 63
+
Sbjct: 597 T 597
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AE +F + +++V W+ +IA +A++G+ ++L F ++ ++VT +SIL AC
Sbjct: 299 EAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPAC 358
Query: 63 SYSGLIEEGIKVFD-IMVHDF 82
+ ++ G +V I+ H F
Sbjct: 359 AQLDNLQAGKQVHAYILRHPF 379
>gi|399107044|gb|AFP20310.1| At1g74600-like protein, partial [Capsella grandiflora]
Length = 204
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYFHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+ + W+ M+ + +HG+ EAL+ F + + P+++TFL +L+
Sbjct: 569 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLY 627
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++++G+ FD M D+ L EHY +DLLA E
Sbjct: 628 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTA 687
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VW ALL ACR+H NV++ E ++ +ND YT
Sbjct: 688 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYT 725
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I +VV W+ +IA ++ G EAL F +I S PN VT +S+L AC+ G +G
Sbjct: 362 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQG 420
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLL 98
++ + + L L+ + G DL+
Sbjct: 421 TEIHAYSLKNCLLTLDNDFGGEDEDLM 447
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI HA +G +AL+ F +I G PN T IL
Sbjct: 465 ARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILM 524
Query: 61 ACSYSGLIEEGIKV 74
AC++ I G ++
Sbjct: 525 ACAHLAAIRIGKQI 538
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA R F + +NVV W+ +I + +G +A+ F ++ DG KPN+VTFLS+L A
Sbjct: 368 DARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRMVE--DGVKPNDVTFLSLLSA 425
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--Y 106
C +SGL +G++ F M+ + +D EHY +DLLA G + EP
Sbjct: 426 CGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSS 485
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++GA+LGAC+ H ++ +GE AK+ F + P++ +Y L
Sbjct: 486 MFGAMLGACKTHGSMPLGETAAKNLFTIAPESSVHYAVL 524
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 16/123 (13%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ ++VV W+ M++ ++ +GQ REAL+ F L++ S +PN T+ S+ AC+
Sbjct: 65 ARKVFDGMPHRSVVSWTAMVSGYSRNGQTREALDLFTLML-ASGVRPNQFTYGSVASACA 123
Query: 64 YSGLIEEGIKVF----------DIMVHDFQLDLNLEHYGITVD---LLATGETEPYV-WG 109
+G + G +V D+ V +D++L G VD L A E + V W
Sbjct: 124 GAGCVRSGEQVHACVAKGRFVGDVFVQSALMDMHLR-CGSVVDAMQLFAEMERKDVVAWN 182
Query: 110 ALL 112
ALL
Sbjct: 183 ALL 185
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A F GI +K+VV W+ M+A +A HG R+AL F + + KP+ +T + +L
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE-SMKTAGVKPDEITMVGVLS 503
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY---- 106
ACS++GL++ G + F M D+ + +HY +DLL G E P+
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE A+ F ++P+N Y L
Sbjct: 564 ASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRI 117
L Y+GL++ G + F M ++ + +HY +DLL G + GALLGA RI
Sbjct: 770 FLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLL--GRVDRLEEGALLGASRI 827
Query: 118 HHNVKIGELVAKDPFHLDPKNDA 140
H N ++GE A+ F + P+N
Sbjct: 828 HGNTELGEKAAQMFFKMGPQNSG 850
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+ DA R+F + +K+VV W+ +++ +A +G EA E F D P N++++ +
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF-------DNMPEKNSISWNGL 179
Query: 59 LFACSYSGLIEEGIKVFD 76
L A ++G IEE +F+
Sbjct: 180 LAAYVHNGRIEEACLLFE 197
>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R F I KNVV WS MI++ I+G EAL F I + KPN VT LS+L ACS+
Sbjct: 507 RAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFE-KIKQNGTKPNAVTALSLLSACSHG 565
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVW 108
GLIEEG+ F MV ++ LEHY VD+L+ E +W
Sbjct: 566 GLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIW 625
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LL +CR + N+ +G A L+P + A Y
Sbjct: 626 GTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGY 659
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ K+VV WS MIA A +G+ EA+ F + + PNNV+ ++++ AC+
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNE--EVIPNNVSIMNLMEACA 462
Query: 64 YSGLIEE-----GIKVFDIMVHDFQLDLN-LEHYGITVDLLAT-------GETEPYVWGA 110
S + + GI V + + + + ++ Y D+ A+ + W A
Sbjct: 463 VSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSA 522
Query: 111 LLGACRIH 118
++ A RI+
Sbjct: 523 MISAFRIN 530
>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 607
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 18/159 (11%)
Query: 4 AERIFG--GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A+R+F I DK++++W+ MI++HA HG + + Y + CS+ KP+ VTFL +L A
Sbjct: 367 AQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFK-LYNRMKCSNSKPDQVTFLGLLTA 425
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C SGL+E+G + F M + + EHY V+LL + +
Sbjct: 426 CVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDAR 485
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC++H K+ E A+ +++P+N Y L
Sbjct: 486 VWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILL 524
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A +IF + DK+V+ WS MI + +GQ AL F + SDG + + V ++IL
Sbjct: 263 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMK--SDGIQADFVIMINIL 320
Query: 60 FACSYSGLIE 69
A + G +E
Sbjct: 321 PAFVHIGALE 330
>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Brachypodium distachyon]
Length = 530
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSI 58
+D+A ++F G+ ++VV +S MI ++G+ EA+ F SD K PN VTF+ +
Sbjct: 335 IDNAFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIGLFK---EMSDAKIVPNAVTFVGL 391
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE------------TEP 105
L A +++GL+EE F M + + ++EHY I VDLL +G+ +P
Sbjct: 392 LSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQP 451
Query: 106 Y--VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ VWGALL ACR+H NV++GE+VA F L P YY L
Sbjct: 452 HASVWGALLLACRLHTNVELGEMVASKCFELAPGESGYYILL 493
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F G+ +K+V+ WS I A HG+ REA+ F ++ PN +TF+ +L
Sbjct: 299 IEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLS 358
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA------------TGETEP--- 105
ACS++GL++EG++ D M D+ ++ +EHYG VDLL G P
Sbjct: 359 ACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDG 418
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
+WG+LL ACR H +V+ + A+ L+P
Sbjct: 419 KIWGSLLSACRSHGDVETAVVAAERLVELEP 449
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY 40
+ A + F G+ +K+VV W+ +I++HA GQ R A E FY
Sbjct: 167 LSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFY 206
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK VV W+ +++ + G A+E F L + +P++V+ +++L
Sbjct: 198 MRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRL-MQMEGFEPDDVSIVAVLP 256
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 257 ACAQLGALELG 267
>gi|297795265|ref|XP_002865517.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311352|gb|EFH41776.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 396
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 21/165 (12%)
Query: 1 MDDAERIFGGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
M+D+ F + + +N+V W+ MI +A +G+ EA+ F +I ++ KPNNVT L +
Sbjct: 157 MEDSLLAFNKLQEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMIKDTNLKPNNVTLLGL 216
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNL---EHYGITVDLLATG----ETEPYV---- 107
LFAC+++GLI+EG F+ V+D+ D NL EHY VD+L+ E E +
Sbjct: 217 LFACNHAGLIQEGYTYFNKAVNDYD-DPNLIQPEHYACMVDMLSRSGRFKEAEELIKSMP 275
Query: 108 -------WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C+IH N ++ +L A +DP++ + Y L
Sbjct: 276 LDPGIGFWKALLGGCQIHSNKRLAKLAASKILEMDPRDVSSYVML 320
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+ + W+ M+ + +HG+ EAL+ F + + P+++TFL +L+
Sbjct: 576 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLY 634
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++++G+ FD M D+ L EHY +DLLA E
Sbjct: 635 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTA 694
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VW ALL ACR+H NV++ E ++ +ND YT
Sbjct: 695 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYT 732
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I +VV W+ +IA ++ G EAL F +I S PN VT +S+L AC+ G +G
Sbjct: 369 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQG 427
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLL 98
++ + + L L+ + G DL+
Sbjct: 428 TEIHAYSLKNCLLTLDNDFGGEDEDLM 454
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI HA +G +AL+ F +I G PN T IL
Sbjct: 472 ARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILM 531
Query: 61 ACSYSGLIEEGIKV 74
AC++ I G ++
Sbjct: 532 ACAHLAAIRIGKQI 545
>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + +VV WS MIA++ HG+ EA++ F + + N+VTFLS+L+ACS+
Sbjct: 341 KVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQ-EKLEANDVTFLSLLYACSHC 399
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----ATGETEPYV-----------WGA 110
GL E+GIK FD+MV + + LEHY VDLL + E E + W
Sbjct: 400 GLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKT 459
Query: 111 LLGACRIHHNVKIGELVAKDPFHLDPKN 138
LL AC+IH ++ ++++ F LDP++
Sbjct: 460 LLSACKIHKKTEMARRISEEVFRLDPRD 487
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ + ER+ + +NVV W+ +IA A +G E L+ Y ++ + +P+ +TF+S++
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQ-YNMMKMAGFRPDKITFVSVIS 293
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 294 SCSELATLGQGQQI 307
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 23/163 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREAL---EAFYLVIHCSDGKPNNVTFLS 57
+++A +F I +K++V W+ MIA +A HG +EAL E+ + I KP++VT +
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTI-----KPDDVTLVG 510
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY- 106
+L ACS++G +++G++ F+ M ++ + N +HY +DLL ++ P+
Sbjct: 511 VLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFY 570
Query: 107 ----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH + ++GE A+ F ++P N Y L
Sbjct: 571 PDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLL 613
>gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 706
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 18/159 (11%)
Query: 4 AERIFG--GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A+R+F I DK++++W+ MI++HA HG + + Y + CS+ KP+ VTFL +L A
Sbjct: 466 AQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFK-LYNRMKCSNSKPDQVTFLGLLTA 524
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C SGL+E+G + F M + + EHY V+LL + +
Sbjct: 525 CVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDAR 584
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC++H K+ E A+ +++P+N Y L
Sbjct: 585 VWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILL 623
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++NV+ WS MI + I+G EAL+ F+ + + PN+VTF+S+L ACS
Sbjct: 366 ARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFH-KMKSQNVVPNSVTFVSLLSACS 424
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV-----------W 108
+SG ++EG K F+ M D+ + EHY VDLL GE + ++ W
Sbjct: 425 HSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAW 484
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH V + +A+ ++P+ + Y L
Sbjct: 485 GALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLL 521
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F +D+NVV+W+ +I+ A + EA + F ++ S PN T +IL
Sbjct: 262 LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI-LPNQCTLAAILV 320
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
+CS G + G V M+ +
Sbjct: 321 SCSSLGSLRHGKSVHGYMIRN 341
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 24/164 (14%)
Query: 1 MDDAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
M+ R+FG I K N+V W+ +I++ A+HG +EALE + KPN +TFLS+
Sbjct: 317 MESIXRVFGEIAAKSRNLVSWTSVISAFAMHGMAKEALEILKECL-----KPNRITFLSV 371
Query: 59 LFACSYSGLIEEG-IKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY------- 106
L ACS+ GL+EEG +K F MV+++Q+ +++HYG +D+L E E
Sbjct: 372 LNACSHGGLVEEGRLKFFAKMVNEYQMSPDVKHYGGLIDMLGRAGRLDEAEKMALEFPDD 431
Query: 107 -----VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LLGAC H NV++G V + ++ K Y L
Sbjct: 432 VVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLL 475
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + +++V+ WS +I A++G EA FY ++ C + KPN+V F+ +L AC
Sbjct: 249 EARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGE-KPNDVVFMGLLTAC 307
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEP--------------YV 107
+++GL+++G+ F+ M ++ + +EHYG VDLL+ GE + +
Sbjct: 308 THAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVII 367
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLG CRI+ + G+ V + LD + Y L
Sbjct: 368 WGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYL 405
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE 70
+ D+NVV W+ MIA +A + + +A+E F ++ PN+VT +S+L AC++ G ++
Sbjct: 155 VRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDL 214
Query: 71 G 71
G
Sbjct: 215 G 215
>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
Length = 870
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I +K+++I++ MI +A+HG +EAL F+ +I KP++V ++L ACS
Sbjct: 631 AFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGI-KPDHVIITTVLSACS 689
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL++EG+ +F + + L +E Y VDLLA G E +W
Sbjct: 690 HAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIW 749
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G LLGACR HH V++G VA F ++ +N Y L
Sbjct: 750 GTLLGACRTHHEVELGRFVADRLFKIEAENIGNYVVL 786
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 43/65 (66%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++AE +F + +++V W+ +IA +A +G+ +ALE F+ ++ +P++VT L I+
Sbjct: 287 VEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIP 346
Query: 61 ACSYS 65
AC+ S
Sbjct: 347 ACAQS 351
>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 17/157 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + ++NV W+ MI + +G EALE F ++ +PN VTFLS L A
Sbjct: 324 DDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLSALSA 383
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------ETEPY- 106
C++ GL+EEG ++F+ M D+ L +EHY VDLL ET
Sbjct: 384 CAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFAMQMPETPNSD 443
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
VW ALL + ++H NV+I + A + F L D + AY
Sbjct: 444 VWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHA-IHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ DAE IF ++K++V+++ MI ++ H +++LE FY+ + PN TF S++
Sbjct: 221 VKDAEEIFRKTVEKDIVVFNAMIEGYSKTHEHAKKSLE-FYIDMQRLCFSPNISTFSSVI 279
Query: 60 FACSYSGLIEEGIKV-FDIMVHDFQLDLNL 88
ACS E G ++ +M F D+ +
Sbjct: 280 GACSVLAAFEAGQQIQCQLMKTKFFTDIRM 309
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A+++F I+++++ W+ MI A+HG+ A + F + ++ +P+++TF+ +L
Sbjct: 389 IEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR-MRKNEIEPDDITFVGLLS 447
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+SG+++ G +F M D+++ LEHYG +DLL T E EP
Sbjct: 448 ACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 507
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL AC+++ NV++GE A++ ++PKN Y L
Sbjct: 508 VIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLL 547
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A+++F I K+VV W+ MI+ +A G +EALE F ++ ++ +P+ T +S++ AC
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK-TNVRPDESTMVSVVSAC 245
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETE 104
+ S IE G +V + D NL+ +DL + GE E
Sbjct: 246 AQSASIELGRQVHS-WIDDHGFGSNLKIVNALIDLYIKCGEVE 287
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F G+ K+V+ W+ +I + +EAL F ++ S PN+VT LSIL AC++ G
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR-SGESPNDVTMLSILPACAHLG 350
Query: 67 LIEEG 71
IE G
Sbjct: 351 AIEIG 355
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D + IF +++ V W+ M+ +A HG EAL+ F + + KPN+ TFL++L
Sbjct: 566 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY-MQLENVKPNHATFLAVLR 624
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + GL+E+G+ F M+ ++ LD LEHY VD++ E +
Sbjct: 625 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 684
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL C+IH NV++ E A L+P++ A Y L
Sbjct: 685 VIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLL 724
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F ++ ++ V W+ +IA+H +G E + L F ++ S +P+ T+ S+L AC
Sbjct: 366 EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQ-SGMEPDEFTYGSVLKAC 424
Query: 63 S 63
+
Sbjct: 425 A 425
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ AE++ + ++ VV W+ +I+ ++ Q EA + F ++ P+N T+ +IL
Sbjct: 465 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV-DPDNFTYATILD 523
Query: 61 ACSYSGLIEEGIKVF-DIMVHDFQLD 85
C+ +E G ++ I+ + Q D
Sbjct: 524 TCANLVTVELGKQIHAQIIKKELQSD 549
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +IF +I+ +VV WS +I +A G EAL+ F + D KPN+VTF+ +L
Sbjct: 520 LKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL-DVKPNHVTFVGVLT 578
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG K++ M +F + EH VDLLA E E +
Sbjct: 579 ACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDI 638
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC+ H NV +G+ A++ +DP N A + L
Sbjct: 639 VVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLL 678
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F + ++NVV W+ +IA ++ +GQ ALE FY + S P+ TF SI+
Sbjct: 114 LKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE-FYFQMLQSGVMPDQFTFGSIIK 172
Query: 61 ACSYSGLIEEGIKV 74
ACS G I G ++
Sbjct: 173 ACSSLGDIGLGRQL 186
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + ++++ W MIA + G E EAL F ++H PN F S+ AC
Sbjct: 217 DALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSAC 276
Query: 63 S 63
S
Sbjct: 277 S 277
>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 793
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 24/164 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV----IHCSDGKPNNVTFL 56
+D A+ F I + +VV WS MI S+A HG ++A+ F L+ IH PN +TFL
Sbjct: 471 LDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIH-----PNQITFL 525
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET------------- 103
+L ACS+ GL+EEG++ ++ M D+ + +N++H VDLL+
Sbjct: 526 GVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGF 585
Query: 104 --EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P +W LL CRI+ ++ G+ VA+ LDP+ + Y L
Sbjct: 586 GDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLL 629
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+D + F ++V W+ MIA +A +GQ AL FY ++ S KP+ ++L A
Sbjct: 371 EDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELL-ASGKKPDEFIITTMLSA 429
Query: 62 CS 63
C+
Sbjct: 430 CA 431
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 15/153 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ DK+V+ WS +I A HG+ EA+ F + +PN +TF+ +L
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLS 361
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEP 105
ACSY+GL++EG+ FD M + ++ +EHYG VDLL +G+ +
Sbjct: 362 ACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADA 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWG+LL ACR H +V L A+ L+P +
Sbjct: 422 KVWGSLLSACRSHGDVDTAVLAAERLVELEPDD 454
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK +V W+ M++ + G A++AF + +P++V+ +++L
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR-SMQTEGFEPDDVSIVAVLP 259
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 260 ACAQLGTLELG 270
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP------NNVTFLS 57
A R+F + D N+ + + MI ++A + Q R+A+ + ++ C P + T+
Sbjct: 65 AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124
Query: 58 ILFACSYSGLIEEGIKV 74
+L AC + +E G +V
Sbjct: 125 LLKACGGTAALELGKQV 141
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 15/153 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ DK+V+ WS +I A HG+ EA+ F + +PN +TF+ +L
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLS 361
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEP 105
ACSY+GL++EG+ FD M + ++ +EHYG VDLL +G+ +
Sbjct: 362 ACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADA 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWG+LL ACR H +V L A+ L+P +
Sbjct: 422 KVWGSLLSACRSHGDVDTAVLAAERLVELEPDD 454
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK +V W+ M++ + G A++AF + +P++V+ +++L
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR-SMQTEGFEPDDVSIVAVLP 259
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 260 ACAQLGALELG 270
Score = 35.4 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP------NNVTFLS 57
A R+F + D N+ + + MI ++A + Q R+A+ + ++ C P + T+
Sbjct: 65 AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124
Query: 58 ILFACSYSGLIEEGIKV 74
+L AC + +E G +V
Sbjct: 125 LLKACGGTAALELGKQV 141
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 15/153 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F G+ DK+V+ WS +I A HG+ EA+ F + +PN +TF+ +L
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLS 361
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEP 105
ACSY+GL++EG+ FD M + ++ +EHYG VDLL +G+ +
Sbjct: 362 ACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADA 421
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWG+LL ACR H +V L A+ L+P +
Sbjct: 422 KVWGSLLSACRSHGDVDTAVLAAERLVELEPDD 454
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DK +V W+ M++ + G A++AF + +P++V+ +++L
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR-SMQTEGFEPDDVSIVAVLP 259
Query: 61 ACSYSGLIEEG 71
AC+ G +E G
Sbjct: 260 ACAQLGALELG 270
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP------NNVTFLS 57
A R+F + D N+ + + MI ++A + Q R+A+ + ++ C P + T+
Sbjct: 65 AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124
Query: 58 ILFACSYSGLIEEGIKV 74
+L AC + +E G +V
Sbjct: 125 LLKACGGTAALELGKQV 141
>gi|404356377|gb|AFR63181.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356381|gb|AFR63183.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356385|gb|AFR63185.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356397|gb|AFR63191.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356409|gb|AFR63197.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356487|gb|AFR63236.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356489|gb|AFR63237.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356491|gb|AFR63238.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356493|gb|AFR63239.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356495|gb|AFR63240.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356497|gb|AFR63241.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356499|gb|AFR63242.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356501|gb|AFR63243.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356503|gb|AFR63244.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356505|gb|AFR63245.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356507|gb|AFR63246.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356509|gb|AFR63247.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356511|gb|AFR63248.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356513|gb|AFR63249.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356515|gb|AFR63250.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356517|gb|AFR63251.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356519|gb|AFR63252.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356521|gb|AFR63253.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356523|gb|AFR63254.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356525|gb|AFR63255.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356527|gb|AFR63256.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356529|gb|AFR63257.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356531|gb|AFR63258.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356533|gb|AFR63259.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356535|gb|AFR63260.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356537|gb|AFR63261.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356539|gb|AFR63262.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356541|gb|AFR63263.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356543|gb|AFR63264.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356545|gb|AFR63265.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356547|gb|AFR63266.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356549|gb|AFR63267.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356679|gb|AFR63332.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356681|gb|AFR63333.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356683|gb|AFR63334.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356685|gb|AFR63335.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356687|gb|AFR63336.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356689|gb|AFR63337.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356691|gb|AFR63338.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356693|gb|AFR63339.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356695|gb|AFR63340.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356697|gb|AFR63341.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356699|gb|AFR63342.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356701|gb|AFR63343.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356703|gb|AFR63344.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356705|gb|AFR63345.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356707|gb|AFR63346.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356709|gb|AFR63347.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356711|gb|AFR63348.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356713|gb|AFR63349.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356715|gb|AFR63350.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356717|gb|AFR63351.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356719|gb|AFR63352.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356721|gb|AFR63353.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356723|gb|AFR63354.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356725|gb|AFR63355.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356727|gb|AFR63356.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356729|gb|AFR63357.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356731|gb|AFR63358.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356733|gb|AFR63359.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356735|gb|AFR63360.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356737|gb|AFR63361.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356739|gb|AFR63362.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356741|gb|AFR63363.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356743|gb|AFR63364.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356745|gb|AFR63365.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356747|gb|AFR63366.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356749|gb|AFR63367.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356751|gb|AFR63368.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356753|gb|AFR63369.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356755|gb|AFR63370.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356757|gb|AFR63371.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. lyrata]
gi|404356759|gb|AFR63372.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356791|gb|AFR63388.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356823|gb|AFR63404.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356827|gb|AFR63406.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
Length = 204
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 29 IEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKE-KGFKPDKVTFVGVLS 87
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS+ GL+EEG + MV D+ ++ HY VD L T P
Sbjct: 88 ACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDA 147
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+I+ +V++G+L AK L+P + Y SL
Sbjct: 148 LVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSL 187
>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
Length = 826
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ IF I K++V WS MI + ++G EALE F ++ C KPN V F+S+L
Sbjct: 442 INQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGV-KPNEVVFISVLS 500
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL EG F M + + L HY VDL++ E +
Sbjct: 501 ACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDK 560
Query: 106 YVWGALLGACR-IHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL CR H +++I ELVA+ LDP+N +YY L
Sbjct: 561 RIWGALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVIL 601
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + K+ + WS MI+ HA ALE F + +D +PN +TF+S+L
Sbjct: 341 LESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQ-MQSTDERPNEITFVSLLQ 399
Query: 61 ACSYSGLIEEG 71
ACS G E G
Sbjct: 400 ACSLIGAQELG 410
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSY 64
+IF K++V+WS M+++ GQ EA E F + + DG +PN+V+ +SIL AC+
Sbjct: 144 KIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQY--DGVEPNHVSIVSILPACAN 201
Query: 65 SGLIEEGIKVFDIMVHDFQLD 85
G + +F +H F +
Sbjct: 202 VGAL-----LFGKEIHGFSIK 217
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F + ++V W+ +I +A +G EA+ F + +D +P+ VTF+ +L AC
Sbjct: 503 EARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFR-EMEDNDVRPDEVTFVGVLSAC 561
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--V 107
S++GLI+EG F+ M D+ L EHY VDLL + +P V
Sbjct: 562 SHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGV 621
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGA+LGACR+H N ++ +L A+ + L+P + Y L
Sbjct: 622 WGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLL 659
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F + +K++V W+ MIA +A GQ R+A+ F + + N V++ S++
Sbjct: 369 LDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKM-----NQRNTVSWNSVIS 423
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
+GL E ++ F +M D
Sbjct: 424 GFVQNGLCVEALQHFVLMRRD 444
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 16/159 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A IF + +K+ W+ MI+ A+HG +A F L + + KPN+VTF+ +L
Sbjct: 312 VQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCF-LEMEKAGVKPNHVTFVGLLS 370
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++SGL+E+G FD+M + ++ + HY VD+L+ + +
Sbjct: 371 ACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDV 430
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTS 144
YVWGALLG C++H NV++GE V L+P N A+Y +
Sbjct: 431 YVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVN 469
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
+D A +F + +N++ W+ +I A G +E+LE F+ + SD KP+ +T S+
Sbjct: 208 LDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASV 267
Query: 59 LFACSYSGLIEEG 71
L AC+ G I+ G
Sbjct: 268 LSACAQLGAIDHG 280
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 17/151 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F ++ +++V W+ +I+ +A HG EAL+ F ++ + +PN +TFLS+L
Sbjct: 358 IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK-AKVQPNEITFLSVLT 416
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGL++EG F++M +++ + H+ VDLL E P
Sbjct: 417 ACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTA 475
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLG+CR+H N+ +G A+ F LDP
Sbjct: 476 AVWGALLGSCRMHKNMDLGVYAAEQIFELDP 506
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A+ IF + KNVV W+ +IA HA G+ + F ++ +P + T+ S+
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR-QGFEPTHFTYSSVFT 315
Query: 61 ACSYSGLIEEG 71
AC+ SG +E+G
Sbjct: 316 ACASSGSLEQG 326
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F + K++V W+ +I+ ++ GQ EAL F ++H +PN T S+L
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLK 214
Query: 61 A 61
A
Sbjct: 215 A 215
>gi|297734798|emb|CBI17032.3| unnamed protein product [Vitis vinifera]
Length = 694
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 19/154 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+++ F I ++ V W+ M+ ++A+HGQ +EAL+ F + D +P+ TF++++ ACS
Sbjct: 412 SKQAFDKIGSRDTVSWNSMLKAYAMHGQGKEALQLFSQM----DAQPDGATFVALISACS 467
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G++EEG K+F+ M ++ + L+HY VD+L E + VW
Sbjct: 468 HAGMVEEGAKIFEAMSNNHGIVPQLDHYACMVDILGRAGRIYEAKELIDKMPMEPDSMVW 527
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
ALLG CR H K +L A LDP N Y
Sbjct: 528 SALLGGCRKHGETKFAKLAAVKLKELDPNNSLGY 561
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+D A + F ++++N+V W+ +++ +A HG E F ++ C +P F S++
Sbjct: 106 LDYAHQWFDEMLERNIVSWTALVSRYAQHGWPDECFRVFTDMLICH--RPTEFAFASVI 162
>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 726
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A F ++ K+ + W+ MI + IHG EAL+ F ++ PN VTFLS+L
Sbjct: 484 ISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQML-VERVLPNRVTFLSLLS 542
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEP 105
ACS+SGLI +G ++F M F ++ +L+HY VDLL G+ +
Sbjct: 543 ACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMIIRMVVVADS 602
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGAL+ +CR+H + K+GE A+ ++ N YYT L
Sbjct: 603 RIWGALVASCRVHGDKKVGEFAAQRLLEMESDNVGYYTLL 642
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A+ +F + ++N V W+ +I +A HG EA+E F + SD K +++TF ++L
Sbjct: 1126 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTAVLN 1184
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++G++E G +F M ++++ LEHY VDLL E +
Sbjct: 1185 ACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDK 1244
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+VWGALLGACR H N+++ E+ A+ F L+P++
Sbjct: 1245 FVWGALLGACRNHGNIELAEVAAEHLFELEPES 1277
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A ++F I D +VV W+ +I +++ +G +A+ F L +G KP + TFL++L
Sbjct: 468 LENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAI--FLLRKMIEEGNKPTSXTFLTVL 525
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
ACS+SGL++EG + F MV D+ + H VD+L T +
Sbjct: 526 SACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPT 585
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL ACR + N+++ E VA+ L+P + Y +L
Sbjct: 586 ASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTL 626
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++AE +F + +N++ W+ I HG ++AL+ F ++ S +PN TF +L
Sbjct: 265 MEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRE-SGIEPNEFTFSIVLA 323
Query: 61 AC 62
+C
Sbjct: 324 SC 325
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I+DK++V+ + M++ +A HG EAL+ + + KPN V++ +++
Sbjct: 955 VEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALB-LVQKMQQAGVKPNVVSWNTLIA 1013
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
S G +VF +M +
Sbjct: 1014 GFSQVGDKSMVSEVFRLMTAN 1034
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI--HCSDGKPNNVTFLSI 58
++DA+ F G+ +K VV WS MI A HG + AL+ F+ ++ H S PN++T S+
Sbjct: 556 IEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHIS---PNHITMTSV 612
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L AC+++GL++E + F+ M F ++ EHY +DLL +T
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQT 672
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL A R+H + ++G L A+ F L+P+ + L
Sbjct: 673 NAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLL 714
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +FG + + +VV W+ I+ +HG ++ ALE L + S PN T SIL AC+
Sbjct: 256 AAVVFGKVPETDVVSWNAFISGCVLHGHDQHALE-LLLQMKSSGLVPNVFTLSSILKACA 314
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT--------------GETEPYVWG 109
SG G ++ MV N +G+ VD+ A + + +W
Sbjct: 315 GSGAFNLGRQIHGFMVKANADSDNYIAFGL-VDMYAKHGLLDDAKKVFDWIPQRDLVLWN 373
Query: 110 ALLGAC 115
AL+ C
Sbjct: 374 ALISGC 379
>gi|302773494|ref|XP_002970164.1| hypothetical protein SELMODRAFT_72257 [Selaginella moellendorffii]
gi|300161680|gb|EFJ28294.1| hypothetical protein SELMODRAFT_72257 [Selaginella moellendorffii]
Length = 177
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHC-SDGKPNNVTFLSIL 59
+D A+ +F + D+N++ W+ MIA+++ +G+ R+AL F+ ++C G+PN +TF S+L
Sbjct: 13 LDAAKAMFDKLPDRNLMSWNAMIAAYSQYGRCRDAL-LFFRCMNCDGGGQPNAITFSSVL 71
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PYV-- 107
ACS++GL+ E + F MV DF + EHY VD+L +GE P++
Sbjct: 72 TACSHAGLLRESWRHFTSMVGDFGIQPVREHYCCIVDVLGRSGELSDAEDLIHNMPFLPT 131
Query: 108 ---WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W L ACR H ++ A++ +DP NDA Y +L
Sbjct: 132 DITWRTFLSACRTHRQASDVKVAAENIVEIDPSNDAAYLTL 172
>gi|26453038|dbj|BAC43595.1| unknown protein [Arabidopsis thaliana]
Length = 333
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+N+V W+ MI +A +G+ EA+ F ++ ++ +PNNVT L +LFAC+++GLI+EG
Sbjct: 108 QRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGY 167
Query: 73 KVFDIMVHDFQLD--LNLEHYGITVDLLATG----ETEPYV-----------WGALLGAC 115
F+ V+D+ L LEHY VD+L+ E E + W ALLG C
Sbjct: 168 MYFNKAVNDYDDPNLLELEHYACMVDMLSRSDRFKEAEELIKSMPLDPGIGFWKALLGGC 227
Query: 116 RIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+IH N ++ +L A LDP++ + Y L
Sbjct: 228 QIHSNKRLAKLAASKILELDPRDVSSYVML 257
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 17/157 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + ++NV W+ MI + +G EALE F ++ +PN VTFLS L A
Sbjct: 324 DDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLSALSA 383
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------ETEPY- 106
C++ GL+EEG ++F+ M D+ L +EHY VDLL ET
Sbjct: 384 CAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFVMQMPETPNSD 443
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
VW ALL + ++H NV+I + A + F L D + AY
Sbjct: 444 VWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHA-IHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+ DAE IF ++K++V+++ MI ++ H +++LE FY+ + PN TF S++
Sbjct: 221 VKDAEEIFRKTVEKDIVVFNAMIEGYSKTHEHAKKSLE-FYIDMQRLCFSPNISTFSSVI 279
Query: 60 FACSYSGLIEEGIKV-FDIMVHDFQLDLNL 88
ACS E G ++ +M F D+ +
Sbjct: 280 GACSVLAAFEAGQQIQCQLMKTKFFTDIRM 309
>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 722
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 18/159 (11%)
Query: 4 AERIFG--GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A+R+F I DK++++W+ MI++HA HG + + Y + CS+ KP+ VTFL +L A
Sbjct: 482 AQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFK-LYNRMKCSNSKPDQVTFLGLLTA 540
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C SGL+E+G + F M + + EHY V+LL + +
Sbjct: 541 CVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDAR 600
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC++H K+ E A+ +++P+N Y L
Sbjct: 601 VWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILL 639
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A +IF + DK+V+ WS MI + +GQ AL F + SDG + + V ++IL
Sbjct: 378 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMK--SDGIQADFVIMINIL 435
Query: 60 FACSYSGLIE 69
A + G +E
Sbjct: 436 PAFVHIGALE 445
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A F GI +K+VV W+ M+A +A HG R+AL F + + KP+ +T + +L
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE-SMKTAGVKPDEITMVGVLS 503
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY---- 106
ACS++GL++ G + F M D+ + +HY +DLL G E P+
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH N ++GE A+ F ++P+N Y L
Sbjct: 564 ASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSI 58
+ DA R+F + +K+VV W+ +++ +A +G EA E F D P N++++ +
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF-------DNMPEKNSISWNGL 179
Query: 59 LFACSYSGLIEEGIKVFD 76
L A ++G IEE +F+
Sbjct: 180 LAAYVHNGRIEEACLLFE 197
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + +KN V W+ +IA++ HG +L F+ ++ DG +P++VTFL+IL AC
Sbjct: 430 ARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE--DGIQPDHVTFLTILSAC 487
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY-----V 107
++G +++GI+ F M ++ + +EHY VDL T + P+ V
Sbjct: 488 GHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGV 547
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG LLGACR+H NV++ E+ ++ LDP+N Y L
Sbjct: 548 WGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLL 585
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +K+ V+W+ M+ G+ A++ F + +C KPN++TF S+L
Sbjct: 23 IEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQT-KPNSITFASVLS 81
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ L E G ++ +++
Sbjct: 82 ICASEALSEFGNQLHGLVI 100
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + D NVV W+GMIA +G EA F +I + P+++TF S L
Sbjct: 124 LSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMIS-AGVSPDSITFASFLP 182
Query: 61 ACSYSGLIEEGIKVFD-IMVHDFQLDLNLE 89
+ + S +++G ++ I+ H LD+ L+
Sbjct: 183 SVTESASLKQGKEIHGYILRHGIALDVFLK 212
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + +NVV WS MI +A +G EALE F + +PN +TF+ +L
Sbjct: 270 MDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQMREFGV-RPNKITFVGVLS 328
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
AC + GL+EEG F +M +F L+ L HYG VDLL+ E P
Sbjct: 329 ACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNV 388
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+G C +V++ E VA L+P ND Y L
Sbjct: 389 MVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVL 428
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA ++F G+ ++VV+W+ MI A++G ALE F ++ PN TF+++L
Sbjct: 265 MEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQ-KGFMPNESTFIAVLC 323
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPYV 107
AC+++G ++EG +VF M D+ + EHYG DLL EP+
Sbjct: 324 ACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL+ +C++H+++ +GE V K L+P + Y L
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVL 422
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++N+V WS M+ + G+ EAL F ++ + +P+ V +S+L AC+
Sbjct: 164 AREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMR-EEFRPDVVVLVSVLKACA 222
Query: 64 YSGLIEEG 71
+ G +E G
Sbjct: 223 HLGAVERG 230
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + ++ V W+ MI +A HG+ EA++ F +I + KPN+VTF+SIL AC
Sbjct: 614 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRAC 672
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GLI++G++ F +M D+ LD L HY VD+L E + +
Sbjct: 673 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 732
Query: 108 WGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLG C IH +NV++ E LDP++ + YT L
Sbjct: 733 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLL 771
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++ V W+ +IA+H +G+ E L F ++ S +P+ TF S+L AC
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR-SRIEPDEFTFGSVLKAC 451
Query: 63 SYSGL 67
+ L
Sbjct: 452 TGGSL 456
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA ++F G+ ++VV+W+ MI A++G ALE F ++ PN TF+++L
Sbjct: 265 MEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQ-KGFMPNESTFIAVLC 323
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPYV 107
AC+++G ++EG +VF M D+ + EHYG DLL EP+
Sbjct: 324 ACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGAL+ +C++H+++ +GE V K L+P + Y L
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVL 422
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++N+V WS M+ + G+ EAL F ++ + +P+ V +S+L AC+
Sbjct: 164 AREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMR-EEFRPDVVVLVSVLKACA 222
Query: 64 YSGLIEEG 71
+ G +E G
Sbjct: 223 HLGAVERG 230
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF I +KN + W+ MI A HG EA+E F +I KP+ +TF+ +L
Sbjct: 411 IEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQ-KPDEITFIGVLS 469
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL++EG + F +M + L+ ++HY +DLL E +
Sbjct: 470 ACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDA 529
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGA+ ACR+ N+ +GE A +DP + Y L
Sbjct: 530 VVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLL 569
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA ++F + +++V W+ ++ + Q +EAL F+ + S P+ +T +++L
Sbjct: 310 MDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEAS-VVPDEITMVNLLT 368
Query: 61 ACSYSGLIEEGIKV 74
ACS G +E G+ V
Sbjct: 369 ACSQLGALEMGMWV 382
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
M+DA R+F +++V W+ +I + G EALE F+ +V + +P+ VT ++ +
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235
Query: 60 FACSYSGLIEEGIKV 74
C +E G ++
Sbjct: 236 SGCGQMRDLELGRRL 250
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +K W+ +I A++G ++LE F + S PN +TF +L
Sbjct: 449 LEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLS 508
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC ++GL+EEG F +M H +Q+ N+ HYG VDLL E+ P
Sbjct: 509 ACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDV 568
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGAC H ++GE V + +LDP++D + T L
Sbjct: 569 PAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTML 608
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + DK+ V WS MI+ + Q AL F + +P+ VT +S++
Sbjct: 348 VENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFD-NMRAQGVRPDEVTIVSVIS 406
Query: 61 ACSYSGLIEEGIKVFD 76
AC+ +E+G V D
Sbjct: 407 ACTNLSALEKGKSVHD 422
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF I DKN + W+ MI A HG EA+E F +I +P+ +TF+ +L AC ++G
Sbjct: 413 IFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGL-QPDEITFIGVLSACCHAG 471
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGAL 111
L++EG + F +M + L+ ++HY +DLL + + VWGAL
Sbjct: 472 LVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGAL 531
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
ACR+H N+ +GE A LDP + Y L
Sbjct: 532 FFACRMHGNITLGEKAAMKLVELDPSDSGIYVLL 565
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+DA +F + +++V W+ ++A + + Q +EA+ F+ + S PN +T +++L
Sbjct: 306 MEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFH-EMQESKVDPNEITMVNLLS 364
Query: 61 ACSYSGLIEEGIKV 74
ACS G +E G+ V
Sbjct: 365 ACSQLGALEMGMWV 378
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK---PNNVTFLSILF 60
A R+F ++VV W+ +I + G REALE F+ ++ DGK P+ VT + +
Sbjct: 175 ARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV--EDGKAVRPDEVTMIGAVS 232
Query: 61 ACSYSGLIEEGIKVFD 76
C+ G +E G ++ +
Sbjct: 233 GCAQMGDLELGKRLHE 248
>gi|224577399|gb|ACN57373.1| At1g74600-like protein [Capsella rubella]
gi|224577405|gb|ACN57376.1| At1g74600-like protein [Capsella rubella]
gi|224577407|gb|ACN57377.1| At1g74600-like protein [Capsella rubella]
gi|224577411|gb|ACN57379.1| At1g74600-like protein [Capsella rubella]
gi|224577413|gb|ACN57380.1| At1g74600-like protein [Capsella rubella]
gi|224577423|gb|ACN57385.1| At1g74600-like protein [Capsella rubella]
gi|224577433|gb|ACN57390.1| At1g74600-like protein [Capsella grandiflora]
Length = 176
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 16 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGVKPDKVTFVGVLS 74
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 75 ACSHGGLVEEGYLHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 134
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 135 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 174
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A ++F + K+++ W+ MI++ A HG +A F L++ S +P+ VTFL++L
Sbjct: 528 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLX-SGIRPDGVTFLALLT 586
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA------------TGETEP--- 105
A ++ G +++G +F+ M D+ ++ +EHYG VD+L T + P
Sbjct: 587 AYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND 646
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRI+ +V++GE V K L P YY L
Sbjct: 647 VVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILL 686
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +++VV W+ M++ +A + REALE F + +P+ V + ++ AC+
Sbjct: 430 ARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVG-VRPDEVAMVIVISACT 488
Query: 64 YSGLIEEGIKV 74
G +E G +V
Sbjct: 489 SLGDLETGFEV 499
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSIL 59
++ A+R+F + KN W+ MI++ A HG+ +EAL F + +PN++TF+S+L
Sbjct: 371 LESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLL 430
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW----------- 108
AC ++GL++EG ++FD+M F L +EHY VDLL+ W
Sbjct: 431 SACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPD 490
Query: 109 ----GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GAL AC+ NV IGE V + LDP N Y
Sbjct: 491 NVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNY 528
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I +K++V W+ +++ +A G REA+E F + S +P+ ++ +S+L AC
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 231 ELGDLELG 238
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ RIF G+ ++ + W+ I+++A +G EA+ F+ + + PN VT ++L AC+
Sbjct: 273 SRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKE-NGVDPNKVTLTAVLSACA 331
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETEPYV-WGALLGACRIHHNV 121
G ++ G Q+D H G+ D+ +AT + Y G+L A R+ +++
Sbjct: 332 SIGALDLGK----------QMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A+++F ++++++ W+ MI A+HG+ A + F + DG +P+++TF+ +L
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMR--KDGIEPDDITFVGLL 446
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP- 105
ACS+SG+++ G +F M D+++ LEHYG +DLL + E +P
Sbjct: 447 SACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPD 506
Query: 106 -YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL AC++H NV++GE A++ ++PKN Y L
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLL 547
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A+++F I K+VV W+ +I+ +A G +EALE F ++ ++ KP+ T +++L AC
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK-TNVKPDESTMVTVLSAC 245
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETE 104
+ S IE G +V + D NL+ +DL + GE E
Sbjct: 246 AQSASIELGRQVHS-WIDDHGFGSNLKIVNALIDLYIKCGEVE 287
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F G+ K+V+ W+ +I + +EAL F ++ S PN VT LSIL
Sbjct: 286 VETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR-SGESPNEVTMLSILP 344
Query: 61 ACSYSGLIEEG 71
AC++ G I+ G
Sbjct: 345 ACAHLGAIDIG 355
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F I + N++IW+ M HA+ AL + +I PN+ TF +L AC+ S
Sbjct: 59 VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL-VPNSYTFPFLLKACAKSK 117
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHY 91
EG ++ H +L +L+ Y
Sbjct: 118 AFREGQQIHG---HVLKLGCDLDLY 139
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+++F I+ KN+V W+ M+A +A +GQ R+ +E F +++ + P+ ++++S+L
Sbjct: 530 IEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGN-VPDQISYVSVLS 588
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY---- 106
CS+SG + EG F M D + EH+ VDLL G+ E P+
Sbjct: 589 GCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNA 648
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACRIH N K+ EL K+ LD + Y L
Sbjct: 649 AIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLL 688
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA R+FGGI+ NV W+ MI+ A GQ REA + F + + ++V++ S++
Sbjct: 55 ISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKM-----PERDSVSWNSMMS 109
Query: 61 ACSYSGLIEEGIKV 74
++G +E IK
Sbjct: 110 GYFHNGELEATIKA 123
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + K+ W+ MI+S + G R+A+E F+ ++ S PN+VTF+S+L ACS++G
Sbjct: 308 VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLR-SGILPNSVTFVSVLSACSHAG 366
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVWGAL 111
LI+EG ++FD M + +D LEHYG VDLL G + EP +W +L
Sbjct: 367 LIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSL 426
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L AC H N ++ E+ + +P +D Y L
Sbjct: 427 LSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLL 460
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A F + K+ V W+ +I H Q +ALE F ++ +PN++T + +L
Sbjct: 201 VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKML-LEGHRPNHITIVGVLS 259
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 260 ACADIGALDLG 270
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + ++ V W+ MI +A HG+ EA++ F +I + KPN+VTF+SIL AC
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRAC 714
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GLI++G++ F +M D+ LD L HY VD+L E + +
Sbjct: 715 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 774
Query: 108 WGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLG C IH +NV++ E LDP++ + YT L
Sbjct: 775 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLL 813
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++ V W+ +IA+H +G+ E L F ++ S +P+ TF SIL AC
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR-SRIEPDEFTFGSILKAC 493
Query: 63 S 63
+
Sbjct: 494 T 494
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + ++ V W+ MI +A HG+ EA++ F +I + KPN+VTF+SIL AC
Sbjct: 614 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRAC 672
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GLI++G++ F +M D+ LD L HY VD+L E + +
Sbjct: 673 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 732
Query: 108 WGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLG C IH +NV++ E LDP++ + YT L
Sbjct: 733 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLL 771
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++ V W+ +IA+H +G+ E L F ++ S +P+ TF SIL AC
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR-SRIEPDEFTFGSILKAC 451
Query: 63 SYSGL 67
+ L
Sbjct: 452 TGGSL 456
>gi|115469032|ref|NP_001058115.1| Os06g0625800 [Oryza sativa Japonica Group]
gi|51535726|dbj|BAD37743.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596155|dbj|BAF20029.1| Os06g0625800 [Oryza sativa Japonica Group]
Length = 433
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
NV +W+ +I+ H HG+ EAL F + +PN+VTFL++L AC+++GL+ EG++
Sbjct: 202 NVTMWTAVISGHGQHGRAAEALALFDRMTRVDGLRPNDVTFLAVLSACAHAGLVGEGLRH 261
Query: 75 FDIMVHDFQLDLNLEHYGITVDLLAT----------------GETEPYVWGALLGACRIH 118
M + L EHY VD+LA + VWGALLGA R H
Sbjct: 262 LSSMSSGYGLTPRGEHYAAAVDMLARVGRLGDAYELVKNLPDCQEHSVVWGALLGAGRKH 321
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V++ EL A+ F L P N Y L
Sbjct: 322 GDVRLVELAARRFFRLQPGNAGKYVVL 348
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ ++VV W+ MI+ A G E A+E F + +P+ TF S+L AC+
Sbjct: 89 ARKVFDGMPQRSVVAWNAMISGCARGGAEARAVEMFG-SMRAEGMRPDQFTFASVLCACA 147
Query: 64 YSGLIEEGIKVFDIMV 79
+E G +V +MV
Sbjct: 148 RLAALEHGRRVHGVMV 163
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 91/161 (56%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A +F + +KN V W+ +IA++ HG ++L F+ ++ +G +P+++TFL+IL
Sbjct: 465 LNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLE--EGIQPDHITFLTIL 522
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
+C ++G +E+G++ F M ++ + +EHY DL + P+
Sbjct: 523 SSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPA 582
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LLGACR+H NV++ E+ ++ L+PKN YY L
Sbjct: 583 ASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLL 623
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R F +IDK+ V+W+ MI + G+ A++ F ++ S+ KP++VTF +L
Sbjct: 61 IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMS-SEAKPDSVTFACVLS 119
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
++E G ++ ++V
Sbjct: 120 ISCSEAMVEYGRQLHGLVVRS 140
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F ++VI++ MI+ + ++G ++ALE F ++ PN +TF SIL AC+
Sbjct: 266 ACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQ-KKMIPNALTFSSILPACA 324
Query: 64 YSGLIEEG 71
I+ G
Sbjct: 325 GLAAIKLG 332
>gi|334188141|ref|NP_199060.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170829|sp|Q9FIH2.1|PP414_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42450, mitochondrial; Flags: Precursor
gi|9759481|dbj|BAB10486.1| unnamed protein product [Arabidopsis thaliana]
gi|332007429|gb|AED94812.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+N+V W+ MI +A +G+ EA+ F ++ ++ +PNNVT L +LFAC+++GLI+EG
Sbjct: 292 QRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGY 351
Query: 73 KVFDIMVHDFQLD--LNLEHYGITVDLLATG----ETEPYV-----------WGALLGAC 115
F+ V+D+ L LEHY VD+L+ E E + W ALLG C
Sbjct: 352 MYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGC 411
Query: 116 RIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+IH N ++ +L A LDP++ + Y L
Sbjct: 412 QIHSNKRLAKLAASKILELDPRDVSSYVML 441
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + +++VV WS MI +HG A+ F +I + KPN++TF++IL ACS
Sbjct: 556 AHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQ-REMKPNDITFMNILSACS 614
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SG +EEG F+ M +F+++ NLEH+ VDLL+ E +W
Sbjct: 615 HSGYVEEGKFYFNSM-KNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIW 673
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL CRIH + + + +D + + YYT L
Sbjct: 674 GALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLL 710
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSIL 59
+D A IF I K+VV W+ MI + G EA+ F + ++C D N VTFL+ +
Sbjct: 452 VDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLD--MNEVTFLTAI 509
Query: 60 FACSYSGLIEEGIKVFDIMV-----HDFQLDLNL-EHYGITVDLL-------ATGETEPY 106
ACS+ G +E+G + ++ D +D L + Y DL + E
Sbjct: 510 QACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVV 569
Query: 107 VWGALLGACRIHHNV 121
W A++G C +H ++
Sbjct: 570 SWSAMIGGCGMHGDI 584
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AERIF + ++++ W+ MI+ + ++AL+ F ++ PN VT +++L +C+
Sbjct: 254 AERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVA-PNAVTIMAVLSSCA 312
Query: 64 YSGLIEEGIKVFDIMVHDFQLD 85
L+ EG V V LD
Sbjct: 313 GFNLLREGKSVHCYAVKHIDLD 334
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A+++F + +++V WS +I+ + +G+ E LE F L++ D + ++VT LSI
Sbjct: 150 LSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVS-QDVELDSVTMLSIAG 208
Query: 61 ACSYSGLIE 69
AC G +
Sbjct: 209 ACGELGFLR 217
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A+ +F + ++N V W+ +I +A HG EA+E F + SD K +++TF ++L
Sbjct: 350 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTAVLN 408
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++G++E G +F M ++++ LEHY VDLL E +
Sbjct: 409 ACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDK 468
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+VWGALLGACR H N+++ E+ A+ F L+P++
Sbjct: 469 FVWGALLGACRNHGNIELAEVAAEHLFELEPES 501
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A R+F I+DK++V+ + M++ +A HG EAL + + KPN V++ +++
Sbjct: 179 VEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALN-LVQKMQQAGVKPNVVSWNTLIA 237
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
S G +VF +M +
Sbjct: 238 GFSQVGDKSMVSEVFRLMTAN 258
>gi|222635914|gb|EEE66046.1| hypothetical protein OsJ_22034 [Oryza sativa Japonica Group]
Length = 425
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
NV +W+ +I+ H HG+ EAL F + +PN+VTFL++L AC+++GL+ EG++
Sbjct: 194 NVTMWTAVISGHGQHGRAAEALALFDRMTRVDGLRPNDVTFLAVLSACAHAGLVGEGLRH 253
Query: 75 FDIMVHDFQLDLNLEHYGITVDLLAT----------------GETEPYVWGALLGACRIH 118
M + L EHY VD+LA + VWGALLGA R H
Sbjct: 254 LSSMSSGYGLTPRGEHYAAAVDMLARVGRLGDAYELVKNLPDCQEHSVVWGALLGAGRKH 313
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V++ EL A+ F L P N Y L
Sbjct: 314 GDVRLVELAARRFFRLQPGNAGKYVVL 340
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F G+ ++VV W+ MI+ A G E A+E F + +P+ TF S+L AC+
Sbjct: 81 ARKVFDGMPQRSVVAWNAMISGCARGGAEARAVEMFG-SMRAEGMRPDQFTFASVLCACA 139
Query: 64 YSGLIEEGIKVFDIMV 79
+E G +V +MV
Sbjct: 140 RLAALEHGRRVHGVMV 155
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSIL 59
++ A+R+F + KN W+ MI++ A HG+ +EAL F + +PN++TF+S+L
Sbjct: 371 LESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLL 430
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW----------- 108
AC ++GL++EG ++FD+M F L +EHY VDLL+ W
Sbjct: 431 SACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPD 490
Query: 109 ----GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GAL AC+ NV IGE V + LDP N Y
Sbjct: 491 NVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNY 528
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I +K++V W+ +++ +A G REA+E F + S +P+ ++ +S+L AC
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 231 ELGDLELG 238
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ RIF G+ ++ + W+ I+++A +G EA+ F+ + + PN VT ++L AC+
Sbjct: 273 SRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKE-NGVDPNKVTLTAVLSACA 331
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETEPYV-WGALLGACRIHHNV 121
G ++ G Q+D H G+ D+ +AT + Y G+L A R+ +++
Sbjct: 332 SIGALDLGK----------QMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D + IF +++ V W+ M+ +A HG EAL+ F + + KPN+ TFL++L
Sbjct: 582 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY-MQLENVKPNHATFLAVLR 640
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + GL+E+G+ F M+ ++ LD LEHY VD++ E +
Sbjct: 641 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 700
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL C+IH NV++ E A L+P++ A Y L
Sbjct: 701 VIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLL 740
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ AE++ + ++ VV W+ +I+ ++ Q EA + F ++ P+N T+ +IL
Sbjct: 481 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG-VDPDNFTYATILD 539
Query: 61 ACSYSGLIEEGIKVF-DIMVHDFQLD 85
C+ +E G ++ I+ + Q D
Sbjct: 540 TCANLVTVELGKQIHAQIIKKELQSD 565
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+V ++ MI A+HGQ +AL+ F + +P+ VTF+ +L
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGI-EPDEVTFVGVLT 437
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG K F+ M + L LEHYG VDLL E +
Sbjct: 438 ACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDA 497
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+V GALLGAC+IH V++GE V K ++P+ D Y
Sbjct: 498 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAY 534
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + KNVV W+ MI+ A GQ +E+L F + KP++VT +++L +C+
Sbjct: 281 ARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV-KPDDVTLVAVLNSCA 339
Query: 64 YSGLIEEG 71
G++E G
Sbjct: 340 NLGVLELG 347
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +++V +WS MIA +HG+ + A++ F+ + + KPN+VTF ++L
Sbjct: 411 LEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFF-EMQEAKVKPNSVTFTNVLC 469
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL++EG F M + + ++HY VD+L T P
Sbjct: 470 ACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSA 529
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
VWGALLGAC +H NV++GEL + L+P+N
Sbjct: 530 SVWGALLGACSLHMNVELGELASDQLLKLEPRN 562
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AER+F GI K+VV W+ MI++ A +ALE F L + + PN+VT + +L AC+
Sbjct: 180 AERLFKGISCKDVVSWNSMISAFAQGNCPEDALELF-LKMERENVMPNSVTMVGVLSACA 238
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
+E G V +E GI VDL
Sbjct: 239 KKLDLEFGRWVCSY----------IERKGIKVDL 262
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A +F + K + W+ +I+++ +G+ +EAL F + KP+ VT +S L A
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369
Query: 62 CSYSGLIEEG------IKVFDIMVHDFQLDLNLEHYGITVDL-------LATGETEPYVW 108
C+ G I+ G IK I+++ + ++ Y L + E + YVW
Sbjct: 370 CAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVW 429
Query: 109 GALLGACRIH 118
A++ +H
Sbjct: 430 SAMIAGLGMH 439
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + NVV W+ MI+ + +HG EA+E F+ + C PN VT++++L AC+
Sbjct: 263 ARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGV-VPNRVTYVAVLSACA 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPYV 107
++GLI EG VF M ++ + +EH+ VD+ G E P V
Sbjct: 322 HAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAV 381
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W A+LGAC++H N +G VA++ +P+N +Y L
Sbjct: 382 WTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLL 419
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + ++++ W+ MI+ + +G EA+E F + S G+P++ TF+S+L ACS
Sbjct: 162 ARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRE-SGGEPDSATFVSVLSACS 220
Query: 64 YSGLIEEGIKVFDIMV 79
G ++ G + + +V
Sbjct: 221 QLGSLDLGCWLHECIV 236
>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
Length = 851
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + K+VV W+ MI+ +A HG +AL F +I + +P+ +TF+++L
Sbjct: 309 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID-NKIRPDWITFVAVLL 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+ G+ F+ MV D++++ +HY VDLL + P+
Sbjct: 368 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA 427
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+G LLGACR+H NV++ E A+ L+ +N A Y L
Sbjct: 428 AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL 467
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +IF +I+ +VV WS +I +A G EAL+ F + D KPN+VTF+ +L
Sbjct: 258 LKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL-DVKPNHVTFVGVLT 316
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG K++ M +F + EH VDLLA E E +
Sbjct: 317 ACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDI 376
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC+ H NV +G+ A++ +DP N A + L
Sbjct: 377 VVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLL 416
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
++NVV W+ +IA ++ +GQ ALE FY + S P+ TF SI+ ACS G I G
Sbjct: 3 ERNVVSWTSVIAGYSQNGQGGNALE-FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 61
Query: 73 KV 74
++
Sbjct: 62 QL 63
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA +F + ++++ W MIA + G E EAL F ++H G+P+ V + +I+
Sbjct: 94 DALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLH--QGRPDLVAWNAIIAGF 151
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIH 118
+Y G + + I F E DL++ W A+L AC H
Sbjct: 152 AY-GELRDAIFFF-------------EEMRCNADLVS--------WNAILTACMRH 185
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++VV W+ MI+++ G+ +A+ A + + S P+++ F++ L
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV-ALFSKLQDSGLVPDSIAFVTTLA 418
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG F +M +++ LEH VDLL E
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H + IG L A F L P+ YY L
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I ++NV+I + MI S+ +G E ++ F + C + +P++ TF +L ACS
Sbjct: 93 ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRPDHYTFPCVLKACS 151
Query: 64 YSGLIEEGIKV 74
SG I G K+
Sbjct: 152 CSGTIVIGRKI 162
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
M+ A +F + ++V + M+ H +HG +A+E F ++ +G P+N F +L
Sbjct: 351 MERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLL--EGITPDNAAFTVVL 408
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETE 104
ACS++GL+EEG + FD+M +++ + + +HY V LL GE
Sbjct: 409 TACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPH 468
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P WGALLG C+ H ++++G++ AK F ++P+N Y SL
Sbjct: 469 PGAWGALLGGCKFHCDIELGKIAAKKLFEIEPENAGNYVSL 509
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A R+F + ++V ++ MI A+HG+ A + F + +PN VTFL +L
Sbjct: 365 IDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGI-EPNEVTFLGLLM 423
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPYV 107
ACS+ GL+ EG K F M ++L EHYG +DLL E P V
Sbjct: 424 ACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDV 483
Query: 108 W--GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ GALLGACRIH NV IGE V + LDP + Y
Sbjct: 484 FACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTY 520
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F + KNVV W+ MI+ A G+ REAL+ F + + KP+ VT + +L
Sbjct: 264 LNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRM-MQDKGVKPDEVTLVGVLN 322
Query: 61 ACSYSGLIEEG 71
+C+ G++E G
Sbjct: 323 SCANLGVLEIG 333
>gi|297734800|emb|CBI17034.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 19/155 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++++F + ++ V W+ M+ ++A+HGQ +EAL F + D +P+ TF+++L ACS
Sbjct: 266 SKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQM----DAQPDGATFVALLSACS 321
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+ EEG K+F+ M ++ + L+HY VD+L E + VW
Sbjct: 322 HAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVW 381
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
ALLG+CR H K+ +L A LDP N Y
Sbjct: 382 SALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYV 416
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA++ F + KN V W+ MI +++ HG EAL++F +IH S+ +PN+VT + +L
Sbjct: 726 ISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIH-SNVRPNHVTLVGVLS 784
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+++GI+ F+ M ++ L EHY VD+L E +
Sbjct: 785 ACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDA 844
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC +H N++IGE A L+P++ A Y L
Sbjct: 845 LVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 884
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++VV W+ MI+++ G+ +A+ A + + S P+++ F++ L
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV-ALFSKLQDSGLVPDSIAFVTTLA 418
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG F +M +++ LEH VDLL E
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H + IG L A F L P+ YY L
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I ++NV+I + MI S+ +G E ++ F + C + +P++ TF +L ACS
Sbjct: 93 ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRPDHYTFPCVLKACS 151
Query: 64 YSGLIEEGIKV 74
SG I G K+
Sbjct: 152 CSGTIVIGRKI 162
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
M+ A +F + ++V + M+ H +HG +A+E F ++ +G P+N F +L
Sbjct: 351 MERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLL--EGITPDNAAFTVVL 408
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETE 104
ACS++GL+EEG + FD+M +++ + + +HY V LL GE
Sbjct: 409 TACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPH 468
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P WGALLG C+ H ++++G++ AK F ++P+N Y SL
Sbjct: 469 PGAWGALLGGCKFHCDIELGKIAAKKLFEIEPENAGNYVSL 509
>gi|341606097|gb|AEK83151.1| At1g74600-like protein [Capsella grandiflora]
gi|341606099|gb|AEK83152.1| At1g74600-like protein [Capsella grandiflora]
gi|341606101|gb|AEK83153.1| At1g74600-like protein [Capsella grandiflora]
gi|341606103|gb|AEK83154.1| At1g74600-like protein [Capsella grandiflora]
gi|341606105|gb|AEK83155.1| At1g74600-like protein [Capsella grandiflora]
gi|341606107|gb|AEK83156.1| At1g74600-like protein [Capsella grandiflora]
gi|341606109|gb|AEK83157.1| At1g74600-like protein [Capsella grandiflora]
gi|341606111|gb|AEK83158.1| At1g74600-like protein [Capsella grandiflora]
gi|341606113|gb|AEK83159.1| At1g74600-like protein [Capsella grandiflora]
gi|341606115|gb|AEK83160.1| At1g74600-like protein [Capsella grandiflora]
gi|341606119|gb|AEK83162.1| At1g74600-like protein [Capsella grandiflora]
gi|341606121|gb|AEK83163.1| At1g74600-like protein [Capsella grandiflora]
gi|341607201|gb|AEK83703.1| At1g74600-like protein [Capsella rubella]
gi|341607203|gb|AEK83704.1| At1g74600-like protein [Capsella rubella]
gi|341607205|gb|AEK83705.1| At1g74600-like protein [Capsella rubella]
gi|341607207|gb|AEK83706.1| At1g74600-like protein [Capsella rubella]
gi|341607209|gb|AEK83707.1| At1g74600-like protein [Capsella rubella]
gi|341607211|gb|AEK83708.1| At1g74600-like protein [Capsella rubella]
gi|341607213|gb|AEK83709.1| At1g74600-like protein [Capsella rubella]
gi|341607215|gb|AEK83710.1| At1g74600-like protein [Capsella rubella]
gi|341607217|gb|AEK83711.1| At1g74600-like protein [Capsella rubella]
gi|341607219|gb|AEK83712.1| At1g74600-like protein [Capsella rubella]
gi|341607221|gb|AEK83713.1| At1g74600-like protein [Capsella rubella]
gi|341607223|gb|AEK83714.1| At1g74600-like protein [Capsella rubella]
gi|341607225|gb|AEK83715.1| At1g74600-like protein [Capsella rubella]
gi|341607227|gb|AEK83716.1| At1g74600-like protein [Capsella rubella]
gi|399107036|gb|AFP20306.1| At1g74600-like protein, partial [Capsella grandiflora]
gi|399107038|gb|AFP20307.1| At1g74600-like protein, partial [Capsella grandiflora]
gi|399107040|gb|AFP20308.1| At1g74600-like protein, partial [Capsella grandiflora]
gi|399107042|gb|AFP20309.1| At1g74600-like protein, partial [Capsella grandiflora]
Length = 204
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGVKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYLHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ ++ ++F G+ DKNV W+ +I +H IHG +EA+E Y + P+ T++ IL
Sbjct: 603 IKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIE-LYERMKKVGQMPDRFTYIGILM 661
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++GL+EEG+K F M + ++ LEHY +D+LA E +
Sbjct: 662 ACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADN 721
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CR ++IGE VAK L+P Y L
Sbjct: 722 RIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLL 761
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ AE++F GI DK V W+ +I HA +G R+AL + + + S +P+ T S+L
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTY-SGQQPDWFTISSLLL 459
Query: 61 ACSYSGLIEEGIKV 74
AC++ ++ G ++
Sbjct: 460 ACAHLKSLQYGKEI 473
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + KN++ W+ +++ + +G + ++ F ++ +D +P+N TF S++ AC
Sbjct: 97 DSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC 156
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
+++A+ F +KNVV W+ MI++ ++ G EA + I + K N VT L++L
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358
Query: 60 FAC 62
AC
Sbjct: 359 PAC 361
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F + + N+V W+ MI + + +G R++ + ++ P+ VT ++IL
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILP 256
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ G ++ G+ + + V
Sbjct: 257 VCAGEGEVDIGMGIHGLAV 275
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 18/144 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++DA +F I DK++V+W+ MI +A+HG R+ALE F + S G P ++TF+ +L
Sbjct: 314 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLR--SQGLWPTDITFIGLL 371
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
ACS+SGL++EG + F M ++ + +EHYG VDLL T +
Sbjct: 372 NACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD 431
Query: 105 PYVWGALLGACRIHHNVKIGELVA 128
+W +LL ACR+H N+ +G+ +A
Sbjct: 432 TVMWVSLLAACRLHKNMALGQQIA 455
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ K+ + W+ MI + HG+ EAL F ++ S P+ V + L
Sbjct: 212 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR-SGVDPDEVAIILALS 270
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------------ATGETEPY 106
A + G E G + + + ++ LN +D+ + G+ +
Sbjct: 271 AVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIV 330
Query: 107 VWGALLGACRIHHNVK 122
VW A++ +H + +
Sbjct: 331 VWNAMINGYAMHGDSR 346
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 18/144 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++DA +F I DK++V+W+ MI +A+HG R+ALE F + S G P ++TF+ +L
Sbjct: 313 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLR--SQGLWPTDITFIGLL 370
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETE 104
ACS+SGL++EG + F M ++ + +EHYG VDLL T +
Sbjct: 371 NACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD 430
Query: 105 PYVWGALLGACRIHHNVKIGELVA 128
+W +LL ACR+H N+ +G+ +A
Sbjct: 431 TVMWVSLLAACRLHKNMALGQQIA 454
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F G+ K+ + W+ MI + HG+ EAL F ++ S P+ V + L
Sbjct: 211 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR-SGVDPDEVAIILALS 269
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL--------------ATGETEPY 106
A + G E G + + + ++ LN +D+ + G+ +
Sbjct: 270 AVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIV 329
Query: 107 VWGALLGACRIHHNVK 122
VW A++ +H + +
Sbjct: 330 VWNAMINGYAMHGDSR 345
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I N V W+ +IA H HG +A+ F ++ +G KP+++TF+++L
Sbjct: 502 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML--DEGVKPDHITFVTLL 559
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL++EG F++M D+ + +L+HYG VD+ + +
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR+H NV +G++ ++ F ++P++ Y+ L
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + + +V+ W+ +I+ +A +G EA+E + ++ + N T++S+L
Sbjct: 400 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 459
Query: 61 ACSYSGLIEEGIKV 74
ACS +G + +G+K+
Sbjct: 460 ACSQAGALRQGMKL 473
>gi|341606139|gb|AEK83172.1| At1g74600-like protein [Capsella grandiflora]
gi|341606151|gb|AEK83178.1| At1g74600-like protein [Capsella grandiflora]
gi|341606155|gb|AEK83180.1| At1g74600-like protein [Capsella grandiflora]
gi|341606157|gb|AEK83181.1| At1g74600-like protein [Capsella grandiflora]
gi|341606159|gb|AEK83182.1| At1g74600-like protein [Capsella grandiflora]
gi|341606163|gb|AEK83184.1| At1g74600-like protein [Capsella grandiflora]
gi|341606165|gb|AEK83185.1| At1g74600-like protein [Capsella grandiflora]
gi|341606167|gb|AEK83186.1| At1g74600-like protein [Capsella grandiflora]
gi|341606169|gb|AEK83187.1| At1g74600-like protein [Capsella grandiflora]
gi|341606171|gb|AEK83188.1| At1g74600-like protein [Capsella grandiflora]
gi|341606173|gb|AEK83189.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y L
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYIXL 182
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 761
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 762 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 821
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L+P + Y SL
Sbjct: 822 LVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISL 861
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA+R+F +++KNV W+ MI + +G EALE F + PN VTFLS L AC
Sbjct: 328 DAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPNFVTFLSALTAC 387
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+++GL+E G ++F M +++L +EHY VDLL V
Sbjct: 388 AHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQAWEFVTRMPERPNSDV 447
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLD 135
W ALL +CRIH N+++ +L A + F L+
Sbjct: 448 WLALLSSCRIHGNIEMAKLAANELFKLN 475
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHA-IHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
DDAE IF +DK+VV+++ MI ++ + +LE Y+ + + +PN TF SI+
Sbjct: 225 DDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAMRSLEV-YIDMQRLNFRPNLSTFASIIG 283
Query: 61 ACSYSGLIEEGIKV 74
ACS E G +V
Sbjct: 284 ACSVLAAFEIGEQV 297
>gi|341606161|gb|AEK83183.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRXREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y L
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYIXL 182
>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
Length = 702
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A+ +F + ++N V W+ +I +A HG EA+E F + SD K +++TF ++L
Sbjct: 507 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTAVLN 565
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++G++E G +F M ++++ LEHY VDLL E +
Sbjct: 566 ACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDK 625
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+VWGALLGACR H N+++ E+ A+ F L+P++
Sbjct: 626 FVWGALLGACRNHGNIELAEVAAEHLFELEPES 658
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++AE +F + +N++ W+ I HG ++AL+ F ++ S +PN TF +L
Sbjct: 265 MEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRE-SGIEPNEFTFSIVLA 323
Query: 61 AC 62
+C
Sbjct: 324 SC 325
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + KNV+ W+ +IA + HG+ EA+E F ++H PN+VTFL++L
Sbjct: 384 IEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH-EGMVPNHVTFLAVLS 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----------ATGETEPY---- 106
ACSYSGL + G ++F+ M D ++ HY ++LL A + P+
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL ACR+H N ++G+ A+ + + P+ + Y L
Sbjct: 503 NMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVL 542
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + +K V W+ +IA +A+HG EAL +Y + S K +N TF I+
Sbjct: 283 IEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYY-EMRDSGVKIDNFTFSIIIR 341
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDL 86
C+ +E + +V H F LD+
Sbjct: 342 ICARLASLEHAKQAHAGLVRHGFGLDI 368
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 20/159 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCS---DGKPNNVTFLS 57
MD A ++F I +N V WS +I A G EA+ F L++ CS + +P+ +TF+
Sbjct: 317 MDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLML-CSGQNEVRPDEITFIG 375
Query: 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY- 106
L ACS++GLI +GI++F M F + +EHYG VDLL+ E+ P
Sbjct: 376 ALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMK 435
Query: 107 ----VWGALLGACRIHHNVKIGELVAKD-PFHLDPKNDA 140
VWGALL CR+H N +I VAK F +DP N A
Sbjct: 436 PNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIDPNNQA 474
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ +F + KN+V W+ ++ ++HG+ +E + F ++ + KP+ ++F S+L AC
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR-TRLKPDFISFTSLLSACG 500
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
GL +EG K F +M ++ + LEHY V+LL E + VW
Sbjct: 501 QVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW 560
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL +CR+ +NV + E+ A+ FHL+P+N Y L
Sbjct: 561 GALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLL 597
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
++ NVV W+ +IA A +G++ EALE F + + KPN+VT S+L AC + G
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFR-EMQVAGVKPNHVTIPSMLPACGNIAALGHG 407
Query: 72 IKV--FDIMVH 80
F + VH
Sbjct: 408 RSTHGFAVRVH 418
>gi|341606153|gb|AEK83179.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y L
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYIXL 182
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE+ F + KN V W+ +I +++ HG EAL++F +IH S+ +PN+VT + +L
Sbjct: 743 ISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH-SNVRPNHVTLVGVLS 801
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+++GI F+ M ++ L EHY VD+L + +
Sbjct: 802 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC +H N++IGE A L+P++ A Y L
Sbjct: 862 LVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 901
>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
Length = 501
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 16/153 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + KNVV+W+ MIAS HG+ EA+ F + S PN VT++S++
Sbjct: 309 IEEAYLVFADMKHKNVVLWNAMIASFTRHGKSWEAMILFEKMQQ-SGISPNEVTYVSMMS 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
C ++GL+EE F +++ D ++ N+ HY VD+LA +G+T+ P
Sbjct: 368 MCGHAGLVEEARSYFGLLISDQTVEPNVLHYSCMVDVLARSGKTDEAWELIQQMPFEPTP 427
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138
+WG+LLG+C + NV I L A+ F L+P+N
Sbjct: 428 SMWGSLLGSCHKYMNVGIARLAAEQLFKLEPEN 460
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D + IF +++ V W+ M+ +A HG EAL+ F + + KPN+ TFL++L
Sbjct: 629 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY-MQLENVKPNHATFLAVLR 687
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC + GL+E+G+ F M+ ++ LD LEHY VD++ E +
Sbjct: 688 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 747
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL C+IH NV++ E A L+P++ A Y L
Sbjct: 748 VIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLL 787
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F ++ ++ V W+ +IA+H +G E + L F ++ S +P+ T+ S+L AC
Sbjct: 429 EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQ-SGMEPDEFTYGSVLKAC 487
Query: 63 S 63
+
Sbjct: 488 A 488
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ AE++ + ++ VV W+ +I+ ++ Q EA + F ++ P+N T+ +IL
Sbjct: 528 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV-DPDNFTYATILD 586
Query: 61 ACSYSGLIEEGIKVF-DIMVHDFQLD 85
C+ +E G ++ I+ + Q D
Sbjct: 587 TCANLVTVELGKQIHAQIIKKELQSD 612
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + K+VV W+ MI+ +A HG +AL F +I + +P+ +TF+++L
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID-NKIRPDWITFVAVLL 393
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+ G+ F+ MV D++++ +HY VDLL + P+
Sbjct: 394 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA 453
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+G LLGACR+H NV++ E A+ L+ +N A Y L
Sbjct: 454 AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL 493
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + KNV+ W+ +IA + HG+ EA+E F ++H PN+VTFL++L
Sbjct: 384 IEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH-EGMVPNHVTFLAVLS 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----------ATGETEPY---- 106
ACSYSGL + G ++F+ M D ++ HY ++LL A + P+
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL ACR+H N ++G+ A+ + + P+ + Y L
Sbjct: 503 NMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVL 542
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + +K V W+ +IA +A+HG EAL +Y + S K +N TF I+
Sbjct: 283 IEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYY-EMRDSGVKIDNFTFSIIIR 341
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDL 86
C+ +E + +V H F LD+
Sbjct: 342 ICARLASLEHAKQAHAGLVRHGFGLDI 368
>gi|359497691|ref|XP_003635608.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 317
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+E F I +VV W+ MIA+ A HG AL +F + + +P+ +TFLS+L AC
Sbjct: 79 DSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG-EMRSNRVEPDGITFLSLLSAC 137
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++G + E + F+ M+ +++ EH+ VD+L+ G E + +
Sbjct: 138 GHAGKVHESLNWFNSMIKSYKIVARPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 197
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H NVK+GEL AK L+P+N Y L
Sbjct: 198 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVL 235
>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F +K + W+ MI AI+G RE + A + + P+ +TF ++L
Sbjct: 179 LESAHKVFWSA-EKTLASWNCMIMGFAINGCGREVI-ALLDGMQRAGILPDAITFTALLS 236
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
C SGL+EEG K FD+M +D+ + +EHY DLL +T P
Sbjct: 237 GCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDA 296
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGA+LG+CRIH N++ E+ AK+ F L+P N A Y
Sbjct: 297 SVWGAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANY 333
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLS 57
D A+R+ + I +++ W+ ++A +++ G +EAL A I S PN V++ +
Sbjct: 40 DHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRGHTKEAL-ALIHDIKISGLTPNVVSWTA 98
Query: 58 ILFACSYSGLIEEGIKVF 75
++ CS +G E I+ F
Sbjct: 99 LISGCSQNGNYSESIEAF 116
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74
NVV W+ +I+ + +G E++EAF + + KPN+ T S+L C L+++G ++
Sbjct: 92 NVVSWTALISGCSQNGNYSESIEAF-VQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEI 150
>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
Length = 332
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + ++ V W+ MI +A HG+ EA++ F +I + KPN+VTF+SIL AC
Sbjct: 85 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRAC 143
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GLI++G++ F +M D+ LD L HY VD+L E + +
Sbjct: 144 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 203
Query: 108 WGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLG C IH +NV++ E LDP++ + YT L
Sbjct: 204 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLL 242
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AE +F I +K+VV W+ +IA +A++G +EA+E F V+ P+ VTF +L AC
Sbjct: 507 EAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFE-VMPLRGIIPDEVTFTGLLSAC 565
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETEPYV-------------- 107
++ G +++G+ +F M + + EHY ++LL G E V
Sbjct: 566 NHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKI 625
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACRIHHN+++ + A+ L+P+N + Y L
Sbjct: 626 WGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLL 663
Score = 38.5 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+A R+F ++ K++V W+ MIA++A GQ +ALE F + + N V++ S++
Sbjct: 374 DEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM-----QERNVVSWNSLITG 428
Query: 62 CSYSGLIEEGIKVFDIM 78
+GL E + F +M
Sbjct: 429 YVQNGLYFEALNCFILM 445
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A IF I ++ V W+ MI +A G+ EAL F ++ C D V++ +++
Sbjct: 342 MDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMV-CKD----MVSWNTMIA 396
Query: 61 ACSYSGLIEEGIKVFDIM 78
A + +G +++ +++F+ M
Sbjct: 397 AYAQAGQMDKALEMFNEM 414
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + ++NVV W+ +I + +G EAL F L+ + KP+ T + L
Sbjct: 404 MDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGE-KPDQTTIVCCLR 462
Query: 61 ACSYSGLIEEGIKVFDIMV 79
A + + G+++ + +
Sbjct: 463 ASANLAALNVGVQLHHLTI 481
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A+++F I++K+VV WS MIA+H IHGQ A F+ ++ S+ KPN VTF++IL
Sbjct: 557 LQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMV-LSNIKPNEVTFMNILS 615
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC ++G ++EG F+ M + + N+EH+ VDLL+
Sbjct: 616 ACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAA 675
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL CRI+ + + E +A++ + + YYT L
Sbjct: 676 SIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTLL 715
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F I D++ W+ MI+++ + EAL+ F + + S+ +PN+VT +S+L +C+
Sbjct: 257 AKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVF-IKMQDSEVEPNDVTMISVLNSCA 315
Query: 64 YSGLIEEGIKV 74
G ++EG V
Sbjct: 316 RLGRLKEGKSV 326
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA+++F + +++V+WS +I+ + +G RE LE F +I C +P++V LS+
Sbjct: 153 LRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMI-CEGIRPDSVMLLSVAE 211
Query: 61 ACSYSGLIE 69
AC G +
Sbjct: 212 ACGKIGCLR 220
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A IF I K++V W+ MI + +G EAL F + + + N VTFLS + A
Sbjct: 457 SSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFK-NRLEINKVTFLSAIQA 515
Query: 62 CSYSGLIEEG 71
CS G +++G
Sbjct: 516 CSNLGYLDKG 525
>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 484
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A RIF G++ KNVV W+ MI ++ IHG +++ F + + KPN TF+S+L
Sbjct: 163 LKTARRIFDGMLCKNVVSWNTMIMAYGIHGFGTMSIQLFSEMRE-NGIKPNESTFVSLLS 221
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TG---------ETEPYV--- 107
+CS +GL++EG + F+ M D+ +D +EH+G VDLL TG E P V
Sbjct: 222 SCSITGLVDEGWEFFNSMKSDYNIDHGIEHFGCMVDLLGRTGNLDAAMQFIEELPLVPTA 281
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL A R +N+ + EL AK F L+ N Y L
Sbjct: 282 RIWGSLLTASRNKNNIALAELAAKHIFSLEHDNTGCYVLL 321
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
A+R+F I +KN+V W+ MIA++ +G EALE F + + KP+ VT SIL A
Sbjct: 65 AKRVFSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWN-EPPKPDAVTIASILPA 121
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ +F + KN+V W+ ++ ++HG+ +E + F ++ + KP+ ++F S+L AC
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR-TRLKPDFISFTSLLSACG 500
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
GL +EG K F +M ++ + LEHY V+LL E + VW
Sbjct: 501 QVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW 560
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL +CR+ +NV + E+ A+ FHL+P+N Y L
Sbjct: 561 GALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLL 597
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
++ NVV W+ +IA A +G++ EALE F + + KPN+VT S+L AC
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFR-EMQVAGVKPNHVTIPSMLPAC 398
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+V ++ MI A+HGQ +AL+ F + +P+ VTF+ +L
Sbjct: 357 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGI-EPDEVTFVGVLT 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG K F+ M + L LEHYG VDLL E +
Sbjct: 416 ACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDA 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+V GALLGAC+IH V++GE V K ++P+ D Y
Sbjct: 476 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAY 512
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + KNVV W+ MI+ A GQ +E+L F + KP++VT +++L +C+
Sbjct: 259 ARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCA 317
Query: 64 YSGLIEEG 71
G++E G
Sbjct: 318 NLGVLELG 325
>gi|255685076|gb|ACU28027.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685124|gb|ACU28051.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685126|gb|ACU28052.1| At1g74600-like protein [Arabidopsis thaliana]
Length = 182
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 15 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 73
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 74 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 133
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L+P + Y SL
Sbjct: 134 LVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISL 173
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + +KN+V W+ MI+++A +G ++AL F +I S KP+++TF+ +L
Sbjct: 438 IDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIG-SGLKPDHITFIGVLS 496
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACSY G + EG F+ M + F ++ EHY VDLL+ E
Sbjct: 497 ACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASE 556
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACR H NV++ +L + LDP++ Y+ L
Sbjct: 557 GGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLL 596
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + ++N+V W+ MIA ++ + Q EALE F+ ++ P T + +L
Sbjct: 335 LGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLS 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
A G +E G ++ V+ + ++L +D+ A G++ A ++ H+
Sbjct: 395 ASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAK-------CGSIDAAAKLFHS 447
Query: 121 VKIGELVA 128
+ LV+
Sbjct: 448 MPEKNLVS 455
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F K+VV W+ MI +A + EA+ F ++ SD KPN VT +++L ACS
Sbjct: 206 ARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLS-SDVKPNEVTMIALLSACS 264
Query: 64 YSGLIEEGIKVFD-IMVHDFQLDLNL 88
G E G + + I D LNL
Sbjct: 265 QKGDSEMGKTLHEHIRRKDITCSLNL 290
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DKNV W+ +I A+HG E++ F ++ + KP+ +TF+++L
Sbjct: 331 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQ-GNVKPDEITFVAVLA 389
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++++G + F +M ++++ N++HYG VD+L+ G E P
Sbjct: 390 ACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNP 449
Query: 106 YVWGALLGACRIHHNVKIGE 125
+W LLGACRIH +++ E
Sbjct: 450 VIWRTLLGACRIHGEIELAE 469
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F G D++VV W+ MI+ + G ++A+E F + KP+ VT LS+L
Sbjct: 228 MAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQ-MQAMGEKPDTVTMLSLLS 286
Query: 61 ACSYSGLIEEG 71
AC+ SG ++ G
Sbjct: 287 ACADSGDLDAG 297
>gi|302812958|ref|XP_002988165.1| hypothetical protein SELMODRAFT_127772 [Selaginella moellendorffii]
gi|300143897|gb|EFJ10584.1| hypothetical protein SELMODRAFT_127772 [Selaginella moellendorffii]
Length = 224
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE+ F + +NV+ W+GMI ++A +G +ALE + ++ PN++TF+S+L
Sbjct: 61 VEDAEKTFWDMRSRNVISWTGMITAYAQNGYNSKALEMLH-AMNLEGVSPNDITFVSVLS 119
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL + G+ M+ D+ L ++HY +D++ E +P
Sbjct: 120 ACSHGGLSKRGLGYLASMLADYGLAPTIDHYVCAIDVVGRSGEAGEASTIAKAMPFEPDP 179
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W ++L AC + + +G + A+ LDPKNDA Y
Sbjct: 180 VAWTSILAACSVQQDASLGAVAAEKFRDLDPKNDASY 216
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 16/159 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A+R+F I DK + I++ MI+ A+HGQ EAL A Y + KP+N+TF + L+A
Sbjct: 524 DQAKRVFDMIPDKELPIYNAMISGFALHGQAVEAL-ALYRCLKEEGLKPDNITFTNALYA 582
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY----- 106
CS++ ++ EG+++F MV + ++ ++EHYG V LL+ PY
Sbjct: 583 CSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQ 642
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ G+LL ACR H+ +++ E ++ L P N Y ++
Sbjct: 643 ILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAM 681
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F I K++++W+ M+A+ A G EAL FY + PN +++ S++
Sbjct: 355 ARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFY-QMQLESVPPNVISWNSLILGFL 413
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99
SG + E +F + + + NL + + LA
Sbjct: 414 NSGQVNEAKDMF-LQMQSLGVQPNLVTWTTLISGLA 448
>gi|224089599|ref|XP_002308772.1| predicted protein [Populus trichocarpa]
gi|222854748|gb|EEE92295.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 17/148 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +F + DKN V ++ MI ++ HG AL F+ + S +P+ +TF+++L ACS
Sbjct: 84 AESVFTKLPDKNSVTYTTMILAYGQHGMGERALSLFH-SMKKSGIEPDAITFIAVLSACS 142
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY--------------V 107
+SGL++EG+++F+ M DF++ + HY D+L G E Y +
Sbjct: 143 HSGLVDEGLQIFESMEKDFKIQPSTPHYCCVTDMLGRVGRVVEAYEFVKQLGEAGNVLEI 202
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLD 135
WG+LLGACR+H +V++GE+VAK ++
Sbjct: 203 WGSLLGACRLHEHVELGEVVAKKLLEME 230
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F + DKNV W+ +I A+HG E++ F ++ + KP+ +TF+++L
Sbjct: 331 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQ-GNVKPDEITFVAVLA 389
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ G++++G + F +M ++++ N++HYG VD+L+ G E P
Sbjct: 390 ACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNP 449
Query: 106 YVWGALLGACRIHHNVKIGE 125
+W LLGACRIH +++ E
Sbjct: 450 VIWRTLLGACRIHGEIELAE 469
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A +F G D++VV W+ MI+ + G ++A+E F + KP+ VT LS+L
Sbjct: 228 MAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQ-MQAMGEKPDTVTMLSLLS 286
Query: 61 ACSYSGLIEEG 71
AC+ SG ++ G
Sbjct: 287 ACADSGDLDAG 297
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++FG + K+V+ WS MI+ +A HG A+E F + + KPN +TFL +L
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFN-EMQRAKVKPNGITFLGLLS 350
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ G+ +EG++ FD+M D+Q++ +EHYG +D+LA +T P
Sbjct: 351 ACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDS 410
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPF-HLDPKNDAYYTSL 145
+WG+LL +CR N+ + LVA D L+P++ Y L
Sbjct: 411 KIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPEDMGNYVLL 450
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A+ +F ++DK +V W+ MI+ + G EA++ F+ + + +P+ ++ +S+L
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMD-FFREMQLAGIEPDEISLISVLP 249
Query: 61 ACSYSGLIEEG 71
+C+ G +E G
Sbjct: 250 SCAQLGSLELG 260
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + K ++ W+ MIA A+HG EALE F + + KPN++TF++IL
Sbjct: 266 IKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFS-RMERARVKPNDITFIAILS 324
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL++ G F+ M+ + ++ +EHYG +DLL E
Sbjct: 325 ACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNA 384
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL AC H + ++GEL + L+P N Y L
Sbjct: 385 VIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALL 424
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F + ++V +WS MI A+HG EA++ FY + ++ KPN VTF ++
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE-ANVKPNGVTFTNVFC 474
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS++GL++E +F M ++ + +HY VD+L E P
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 534
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC+IH N+ + E+ L+P+ND + L
Sbjct: 535 SVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLL 574
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A + + K++V W+ +I+++ +G+ EAL F+ + + K N +T +S L A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 62 CSYSGLIEEGIKVFD-IMVHDFQLDLNLEH-----YGITVDLLATGET-------EPYVW 108
C+ G +E G + I H +++ ++ Y DL + E + +VW
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 109 GALLGACRIH 118
A++G +H
Sbjct: 435 SAMIGGLAMH 444
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I +K+VV W+ MI G +ALE F + D K ++VT + +L
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK-KMESEDVKASHVTMVGVLS 240
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ +E G +V + + ++++NL +D+
Sbjct: 241 ACAKIRNLEFGRQVCS-YIEENRVNVNLTLANAMLDM 276
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F I +K+V +WS MIA A+HG+ A+E F L + + KPN+VTF ++L
Sbjct: 528 VEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELF-LDMQETQVKPNSVTFTNLLC 586
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+SGL++EG ++FD M + + +HY VD+L E P
Sbjct: 587 ACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSA 646
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC IH N+++ E ++P N Y L
Sbjct: 647 SVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLL 686
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFAC 62
A IF + K++ W+ +I+ + G+ +EAL F L + S +P+ VT LS L AC
Sbjct: 428 ARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSAC 487
Query: 63 SYSGLIEEGIKVFD-IMVHDFQLDLNL-----EHYGITVDLL-------ATGETEPYVWG 109
+ G ++ G + I QL+ NL + Y + D+ + G + +VW
Sbjct: 488 AQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWS 547
Query: 110 ALLGACRIH 118
A++ +H
Sbjct: 548 AMIAGLAMH 556
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+K++V W+ M+ G +AL+ F + + PN VT +S++ AC+ + + G
Sbjct: 305 NKDIVSWNSMVTGFVQGGYPDKALDLFERMRN-EGVHPNAVTMVSVMSACAKTMNLTLGR 363
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDL-LATGETE 104
KV D + + ++ +NL T+D+ + GE E
Sbjct: 364 KVCDYIDRN-EMMMNLNVCNATIDMFVKCGEVE 395
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 93/162 (57%), Gaps = 20/162 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDG---KPNNVTFLSIL 59
A R+F + +NV+ W+ +I ++ +HG+ +E+LE F +V + G KP VTF+++
Sbjct: 490 ARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALF 549
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL----------------LATGET 103
+CS+SG+++EG+ +F M ++ ++ +HY VDL + +G
Sbjct: 550 ASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFD 609
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ W +LLGACRI+HN++IGE+ A++ L P ++Y L
Sbjct: 610 KVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLL 651
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+DDA+ + D+++V W+ MI+S + + + EAL +L + +G KP+ VTF S+L
Sbjct: 166 LDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEAL--MFLRLMVLEGVKPDGVTFASVL 223
Query: 60 FACSYSGLIEEGIKV 74
ACS+ L+ G ++
Sbjct: 224 PACSHLDLLRTGKEI 238
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH---------CSDG------ 48
++RIF + D+++V W+ +I S+ I G+ +AL L++H DG
Sbjct: 373 SKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL----LLLHEMQRIEEKSTYDGDYNDEK 428
Query: 49 ----KPNNVTFLSILFACSYSGLIEEGIKV 74
KPN++T +++L C+ + +G ++
Sbjct: 429 QVPFKPNSITLMTVLPGCASLSALAKGKEI 458
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I N V W+ +IA H HG +A+ F ++ +G KP+++TF+++L
Sbjct: 420 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML--DEGVKPDHITFVTLL 477
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL++EG F++M D+ + +L+HYG VD+ + +
Sbjct: 478 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 537
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR+H NV +G++ ++ F ++P++ Y+ L
Sbjct: 538 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 578
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + + +V+ W+ +I+ +A +G EA+E + ++ + N T++S+L
Sbjct: 318 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 377
Query: 61 ACSYSGLIEEGIKV 74
ACS +G + +G+K+
Sbjct: 378 ACSQAGALRQGMKL 391
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ ++ ++F + K+VV W+ +I++ ++G+ ++A+ AF + + P++V F++I+F
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFG-EMEAAGIVPDHVAFVAIIF 463
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG+ F M D++++ +EHY VDLL+ + +
Sbjct: 464 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 523
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL ACR+ + +I E V++ L+P + YY
Sbjct: 524 SIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 560
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH-----CSDGKPNNVTF 55
+D A ++F + ++VV W+ +I+ + +G EALE +Y I + KP+ +T
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTI 225
Query: 56 LSILFACSYSGLIEEGIKVFDIMV 79
SIL AC + G +E G V D M+
Sbjct: 226 TSILQACGHLGDLEFGKYVHDYMI 249
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A+ +F + ++ W+ ++ +A HGQ +AL F L++ S KP+ + F+ +L
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLK-SGTKPDGIAFIGVLS 461
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+++G++ F + L ++HY +DLLA + +
Sbjct: 462 ACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDK 521
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
Y+W ALLG CRIH N+++ + AK F ++P+N A Y +L
Sbjct: 522 YIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTL 561
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A IF + +++VV W+ MI ++ +G+ E F +++ S+ PN+ TF +L
Sbjct: 302 IEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMN-SNIMPNDFTFAGVLN 360
Query: 61 ACS 63
AC+
Sbjct: 361 ACA 363
>gi|224577443|gb|ACN57395.1| At1g74600-like protein [Capsella grandiflora]
Length = 176
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 16 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGFKPDKVTFVGVLS 74
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 75 ACSHGGLVEEGYFHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 134
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 135 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 174
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ ++NV +S MI AIHG+ R A++ FY ++ + KPN+VTF+ +L
Sbjct: 295 VEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLE-TGVKPNHVTFVGVLT 353
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++GL+++G ++F M + + E Y DLL+ ET P
Sbjct: 354 ACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDG 413
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALLGA +H N + E+ +K F L+P N Y
Sbjct: 414 AVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNY 450
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 16/150 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A RIF I ++V W+ MI HA+HG REAL + + + KPN++TFL++L ACS
Sbjct: 328 ARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL-VLFDRMELGNLKPNHITFLAVLTACS 386
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT-GETE--------------PYVW 108
++GL+++G K F+ M + + +LEH+ D L G+ E VW
Sbjct: 387 HAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVW 446
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKN 138
LL AC++H N + E VAK F L+P++
Sbjct: 447 STLLRACKVHKNTVLAEEVAKKIFDLEPRS 476
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D + ++F + ++ ++W+ M+A A +G EAL F ++H S KP VTF S++ A
Sbjct: 225 DYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLH-SGIKPMPVTFSSLIPA 283
Query: 62 C 62
C
Sbjct: 284 C 284
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F + +++ V W+ M+A + HG EA++ F ++ PN +T +++ AC
Sbjct: 549 EARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK-ERVSPNEITLTAVISAC 607
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY-----------V 107
S +GL++EG ++F +M DF++ +HYG VDLL E E + V
Sbjct: 608 SRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISV 667
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLGAC+ H+NV++ E A L+P + Y +L
Sbjct: 668 WHALLGACKSHNNVQLAERAAHHILELEPSYASVYITL 705
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
AE++F + ++VV WS MIA++A + +A + F + ++ +PN +TFLSIL AC
Sbjct: 109 SAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD-ANIEPNRITFLSILKAC 167
Query: 63 SYSGLIEEGIKVFDIM 78
+ ++E+G K+ I+
Sbjct: 168 NNYSILEKGRKIHTIV 183
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHG-QEREALEAFYLVIHCSDGK---PNNVTFL 56
+ +A IF + ++V+ WS MIA +A G +++E+++ + ++ + PN VTF+
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368
Query: 57 SILFACSYSGLIEEGIKVF-DIMVHDFQLDLNLE 89
SIL AC+ G +E+G ++ ++ F+LD +L+
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQ 402
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + ++NVV W+ +I ++A H + EA E + ++ + PN VTF+S+L +C+
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ-AGISPNAVTFVSLLNSCNTPE 272
Query: 67 LIEEGIKV 74
+ G ++
Sbjct: 273 ALNRGRRI 280
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV--IHCSDGKPNNVTFLSI 58
+ AE++F + +NVV W+ MIA +A +G + ++ F L+ + +P+ VT ++I
Sbjct: 446 LSSAEKVFSEMPTRNVVSWNLMIAGYAQNG---DIVKVFELLSSMKAEGFQPDRVTVITI 502
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
L AC +E G +VH + L LE
Sbjct: 503 LEACGALAGLERG-----KLVHAEAVKLGLE 528
>gi|255685050|gb|ACU28014.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685052|gb|ACU28015.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685054|gb|ACU28016.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685056|gb|ACU28017.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685058|gb|ACU28018.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685060|gb|ACU28019.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685064|gb|ACU28021.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685066|gb|ACU28022.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685068|gb|ACU28023.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685070|gb|ACU28024.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685072|gb|ACU28025.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685074|gb|ACU28026.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685078|gb|ACU28028.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685080|gb|ACU28029.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685082|gb|ACU28030.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685086|gb|ACU28032.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685088|gb|ACU28033.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685090|gb|ACU28034.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685092|gb|ACU28035.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685096|gb|ACU28037.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685098|gb|ACU28038.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685100|gb|ACU28039.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685102|gb|ACU28040.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685104|gb|ACU28041.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685106|gb|ACU28042.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685108|gb|ACU28043.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685110|gb|ACU28044.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685112|gb|ACU28045.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685114|gb|ACU28046.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685118|gb|ACU28048.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685120|gb|ACU28049.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685122|gb|ACU28050.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685128|gb|ACU28053.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685130|gb|ACU28054.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685132|gb|ACU28055.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685134|gb|ACU28056.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685136|gb|ACU28057.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685138|gb|ACU28058.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685140|gb|ACU28059.1| At1g74600-like protein [Arabidopsis thaliana]
Length = 182
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 15 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 73
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 74 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 133
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L+P + Y SL
Sbjct: 134 LVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISL 173
>gi|15221226|ref|NP_177580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169846|sp|Q9CA73.1|PP119_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74400
gi|12324820|gb|AAG52382.1|AC011765_34 hypothetical protein; 20273-21661 [Arabidopsis thaliana]
gi|332197466|gb|AEE35587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-----PNNVTFL 56
+ A ++F + K+V ++ MI +A++GQ +E+LE F + + PN+VTF+
Sbjct: 221 EKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFI 280
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
+L ACS+SGL+EEG + F M+ D+ L H+G VDL
Sbjct: 281 GVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPI 340
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ +W LLGAC +H NV++GE V + F LD + Y +L
Sbjct: 341 KPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVAL 384
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE+ F + KN V W+ +I +++ HG EAL++F +IH S+ +PN+VT + +L
Sbjct: 703 ISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH-SNVRPNHVTLVGVLS 761
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+++GI F+ M ++ L EHY VD+L + +
Sbjct: 762 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 821
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC +H N++IGE A L+P++ A Y L
Sbjct: 822 LVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 861
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + KNV+ W+ +IA + HG+ EA+E F ++H PN+VTFL++L
Sbjct: 384 IEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH-EGMVPNHVTFLAVLS 442
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL----------ATGETEPY---- 106
ACSYSGL + G ++F+ M D ++ HY ++LL A + P+
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALL ACR+H N ++G+ A+ + + P+ + Y L
Sbjct: 503 NMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVL 542
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ +F + +K V W+ +IA +A+HG EAL +Y + S K +N TF I+
Sbjct: 283 IEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYY-EMRDSGVKIDNFTFSIIIR 341
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDL 86
C+ +E + +V H F LD+
Sbjct: 342 ICARLASLEHAKQAHAGLVRHGFGLDI 368
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A RIF G+ +K+ W+ +I A++G+ +ALE F + + P+ VTF+ +L
Sbjct: 140 IEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQ-VEAIPDEVTFIGVLS 198
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL------------------ATGE 102
ACS+ GL+EEG + F+ M + ++ LEHYG +DLL A E
Sbjct: 199 ACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKIVNANNE 258
Query: 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
++G+LL ACRI+ NV++GE VA+ ++ ++ + +T L
Sbjct: 259 IIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTLL 301
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ A ++F +K + W+ MI A+HGQ A+ F ++ G +P+ VTF+ +L
Sbjct: 288 LGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLL 347
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC++ GL+E+G F++MV ++ ++ +EHYG +DLL E +
Sbjct: 348 NACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPD 407
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LL C++H + E AK +DP N Y L
Sbjct: 408 EVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIML 448
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF-YLVIHCSDGKPNNVTFLSIL 59
++ A R+FG ++D++V W+ +IA +G + +E F +V C+ +PN VT + L
Sbjct: 187 VESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECN--RPNGVTVVCAL 244
Query: 60 FACSYSGLIEEG 71
AC + G+++ G
Sbjct: 245 SACGHMGMLQLG 256
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+E F I +VV W+ MIA+ A HG AL +F + + +P+ +TFLS+L AC
Sbjct: 352 DSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG-EMRSNRVEPDGITFLSLLSAC 410
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++G + E + F+ M+ +++ EH+ VD+L+ G E + +
Sbjct: 411 GHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 470
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC +H NVK+GEL AK L+P+N Y L
Sbjct: 471 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVL 508
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A+ +F I +++ W+ MI +A +G EAL+ ++ +P++ T +S+L A
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG-MQPDHSTLISVLTA 308
Query: 62 CSYSGLIEEGIKV 74
CS ++EG K
Sbjct: 309 CSSLASLQEGRKT 321
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ IF + K+V+ WS MIA A +G EAL F + KPN++T L +LF
Sbjct: 533 LEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE-SMKVQGPKPNHITILGVLF 591
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------------EPYV 107
ACS++GL+ EG F M + + +D EHYG +DLL E EP V
Sbjct: 592 ACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDV 651
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LL ACR NV + AK+ LDP++ Y L
Sbjct: 652 VTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLL 691
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 16/144 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ +F + D++V+ ++ MI+ +++G+ R+A+E F ++I +P NVTF+ +L
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG-RRLRPTNVTFVGVLN 387
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+ GL++ G K+F M D+ ++ +EHYG VDLL T + P
Sbjct: 388 ACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 447
Query: 106 YVWGALLGACRIHHNVKIGELVAK 129
+ G LL AC++H N+++GE VAK
Sbjct: 448 IMLGTLLSACKMHKNLELGEQVAK 471
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + K+ V W+ MI + + ALEAF + + +PN T + +L
Sbjct: 228 VEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFR-GMQGENVRPNEFTIVCVLS 286
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
ACS G +E G V M F+++LNL
Sbjct: 287 ACSQLGALEIGRWVHSYM-RKFEIELNL 313
>gi|341606183|gb|AEK83194.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGFKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYFHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE++ + +++ W+ +IA++ I+G AL F + + +PN +TF +IL AC+
Sbjct: 474 AEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACA 533
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++GL+ EG ++F M ++ L+ +EH+ VDLL E P VW
Sbjct: 534 HAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPFEPGPEVW 593
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLG C + N+ I E VAK + L+PK+ A+ +L
Sbjct: 594 GALLGGCGLFGNLDIAERVAKKLYILEPKSRAWRVAL 630
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE++ +I ++VV W+ +I+ ++G +AL F+ + PN VT LSIL ACS
Sbjct: 196 AEKLMKRLICRDVVSWTSVISGCVLNGMVEKAL-LFFFEMQEDGVSPNTVTILSILQACS 254
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + DK VV W+ M++ H G E + F+ ++ +PN T IL
Sbjct: 93 IEDAAKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLETL--QPNEYTLAVILQ 150
Query: 61 ACS 63
AC+
Sbjct: 151 ACA 153
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA+ F G+ ++ +V WS MI A HG + AL+ F+ ++ +G PN++T S+L
Sbjct: 561 IEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRML--DEGVAPNHITLTSVL 618
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE---------PY--- 106
AC+++GL+++ K F+ M F +D EHY +D+L G+ E P+
Sbjct: 619 SACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQAN 678
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGA R+H + ++G + A+ F L+P+ + L
Sbjct: 679 AAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLL 719
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +VV W+ I+ HG + ALE L + S PN T S+L AC+
Sbjct: 259 AATVFEKMPAADVVSWNAFISGCVTHGHDHRALE-LLLQMKSSGLVPNVFTLSSVLKACA 317
Query: 64 YSGLIEEGIKVFDIMVH---DFQ-------LDLNLEHYGITVDLLATGETEPY----VWG 109
+G G ++ MV DF +D+ +H G D + P +W
Sbjct: 318 GAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKH-GFLDDARKVFDFMPRRDLILWN 376
Query: 110 ALLGACRIHHNVKIGELVA 128
AL+ C H+ + GE+++
Sbjct: 377 ALISGCS--HDGRHGEVLS 393
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 1 MDDAERIFGGII----DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
+D+A R+F + ++N V W+ MI+++ + Q +A+ F ++ S +PN F
Sbjct: 151 VDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMV-WSGERPNEFGFS 209
Query: 57 SILFACSYSGLIEEGIKVFDIMVH 80
++ AC+ S +E G +V +V
Sbjct: 210 CVVNACTGSRDLEAGRQVHGAVVR 233
>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g71420-like [Vitis vinifera]
Length = 741
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 19/154 (12%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++++F + ++ V W+ M+ ++A+HGQ +EAL F + D +P+ TF+++L ACS
Sbjct: 422 SKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQM----DAQPDGATFVALLSACS 477
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+ EEG K+F+ M ++ + L+HY VD+L E + VW
Sbjct: 478 HAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVW 537
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
ALLG+CR H K+ +L A LDP N Y
Sbjct: 538 SALLGSCRKHGETKLAKLAAVKLKELDPNNSLGY 571
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF--YLVIHCSDGKPNNVTFLSI 58
+D A ++F + +KN+V W+ +++ +A HG+ E F L+ H +P F S+
Sbjct: 116 LDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIWH----QPTEFAFASV 171
Query: 59 LFAC 62
+ AC
Sbjct: 172 ISAC 175
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ ++ ++F + K+VV W+ +I++ ++G+ ++A+ AF + + P++V F++I+F
Sbjct: 568 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFG-EMEAAGIVPDHVAFVAIIF 626
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG+ F M D++++ +EHY VDLL+ + +
Sbjct: 627 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 686
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL ACR+ + +I E V++ L+P + YY
Sbjct: 687 SIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 723
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D RIF ++ ++ V W+ MI ++ G E+++ F +++ KP+ +T SIL AC
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN--QFKPDLLTITSILQAC 326
Query: 63 SYSGLIEEGIKVFDIMV 79
+ G +E G V D M+
Sbjct: 327 GHLGDLEFGKYVHDYMI 343
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + ++VV W+ +I+ + +G EALE +Y + P++ T S+L
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG-VVPDSYTMSSVLR 224
Query: 61 ACSYSGLIEEG 71
AC G +EEG
Sbjct: 225 ACGGLGSVEEG 235
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 90/145 (62%), Gaps = 16/145 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ +F + D++V+ ++ MI+ +++G+ R+A+E F +++ +P NVTF+ +L
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVG-RRLRPTNVTFVGVLN 387
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+ GL++ G ++F M D++++ +EHYG VDLL T + P
Sbjct: 388 ACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 447
Query: 106 YVWGALLGACRIHHNVKIGELVAKD 130
+ G LL AC++H N+++GE VAK+
Sbjct: 448 IMLGTLLSACKMHKNLELGEQVAKE 472
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + K+ V W+ MI + + ALEAF + + +PN T + +L
Sbjct: 228 VEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFR-GMQGENVRPNEFTIVCVLS 286
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
ACS G +E G V M F+++LNL
Sbjct: 287 ACSQLGALEIGRWVHSYM-RKFEIELNL 313
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F I++ +VV W+ +I+++A+HG+ ALE F ++ SD K N+VTF+S+L C
Sbjct: 504 DALKVFESIVECDVVSWNSIISAYALHGRATNALELFDR-MNKSDIKANDVTFVSLLSVC 562
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
+GL+ +G+ +F+ M+ D ++ ++EHY V LL P V
Sbjct: 563 GSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMV 622
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALL +C +H NV +G A+ ++P ++ Y L
Sbjct: 623 WRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLL 660
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA IF I +V++WS +I+ +A Q +A E F ++ S PN + +L
Sbjct: 300 IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMR-SFVVPNEFSLSGVLQ 358
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ +E G ++ ++ +
Sbjct: 359 ACANIAFLELGEQIHNLAI 377
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 23/111 (20%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA-- 61
A +F GI+ K+ V W+ M++ ++ + AL F + + KPN S L A
Sbjct: 202 ARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS-KMRMTGFKPNPFVLTSALKAAV 260
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALL 112
C S L+ +GI +G +V L +TEP+V GALL
Sbjct: 261 CLSSALLGKGI------------------HGCSVKTLY--DTEPHVGGALL 291
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+++ IF + D N V W+ +I + G +AL F+ + + VTF S+L
Sbjct: 401 MENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFH-EMRAAHMLSTQVTFSSVLR 459
Query: 61 ACSYSGLIEEGIKVFDIM 78
AC+ + I+ +++ ++
Sbjct: 460 ACANTSSIKHAVQIHSLI 477
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 16/144 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ +F + D++V+ ++ MI+ +++G+ R+A+E F ++I +P NVTF+ +L
Sbjct: 286 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG-RRLRPTNVTFVGVLN 344
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+ GL++ G K+F M D+ ++ +EHYG VDLL T + P
Sbjct: 345 ACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 404
Query: 106 YVWGALLGACRIHHNVKIGELVAK 129
+ G LL AC++H N+++GE VAK
Sbjct: 405 IMLGTLLSACKMHKNLELGEQVAK 428
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 1 MDDAERIFG----GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
+ DA R+F ++ K+ V W+ MI + + ALEAF + + +PN T +
Sbjct: 181 LGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFR-GMQGENVRPNEFTIV 239
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
+L ACS G +E G V M F+++LNL
Sbjct: 240 CVLSACSQLGALEIGRWVHSYM-RKFEIELNL 270
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + K++V W+ MIA ++ HG EAL F+ + KP++ T +++L
Sbjct: 455 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR-FFESMKREGLKPDDATMVAVLS 513
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+++G + F M D+ + N +HY VDLL E +
Sbjct: 514 ACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDA 573
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LLGA R+H N ++ E A F ++P+N Y L
Sbjct: 574 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLL 613
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ E++F ++ +NV ++ MI++ HGQ + L AFY + +PN VTF+S+L
Sbjct: 486 LELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGL-AFYEQMKEEGNRPNKVTFISLLS 544
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL++ G +++ M++D+ ++ N+EHY VDL+ +
Sbjct: 545 ACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDA 604
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+G+LLGACR+H+ V++ EL+A+ L + +Y L
Sbjct: 605 NVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLL 644
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +AE IF DK++++W+ MI + + G A F I ++ +PN +T +SIL
Sbjct: 385 IKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRR-IWGAEHRPNFITVVSILP 443
Query: 61 ACSYSGLIEEGIKV 74
C+ G + +G ++
Sbjct: 444 ICTQMGALRQGKEI 457
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A + F + KN VIW+ MI +A +G+ EA++ + +I + KP+ +TF+S+L
Sbjct: 556 IESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGE-KPDGITFVSVLT 614
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------GETEPY---- 106
ACS+SGL++ G+++ M D ++ L+HY VD L E PY
Sbjct: 615 ACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSS 674
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL +CR++ +V + VA+ HLDP+N A Y L
Sbjct: 675 VLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLL 714
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSI 58
M+ AE IF + + NVV W+ MIA GQE + ++ + D +PN VT +SI
Sbjct: 286 MNGAELIFTEMPEVNVVSWNIMIAGF---GQEYRSDKSIEYLKRMRDSGFEPNEVTCISI 342
Query: 59 LFACSYSGLIEEGIKVFDIM 78
L AC SG +E G ++F+ +
Sbjct: 343 LGACFRSGDVETGRRIFNTI 362
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A +F G+ +++VV W+ MI+ G E +AL+ + ++ DG P+ T S+L
Sbjct: 74 LEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMV--GDGFLPSRFTLASVL 131
Query: 60 FACS 63
ACS
Sbjct: 132 SACS 135
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + D+++ W+ +I A+HG + A+ F + +P+ VTF+ +L
Sbjct: 302 LEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFN-EMRGEGVEPDVVTFVGLLN 360
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ G ++EGI+ F++M H+ ++ +EHYG +DLL E +
Sbjct: 361 ACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDALNVISDMRIEADE 420
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR+H V+ EL + LDP N Y L
Sbjct: 421 VMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVML 460
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F G+ ++NVV W+ +++ +A G+ +A+ F + + + + +I+
Sbjct: 170 MADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERM-----PERDVAAWNAIIA 224
Query: 61 ACSYSGLIEEGIKVFDIMV 79
CS +GL E + +F MV
Sbjct: 225 GCSQNGLFVEAVGIFGRMV 243
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++IF + +++V W+ MI A+HGQ +A+E F + KPN+V F+++L ACS
Sbjct: 394 AKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ-METEGIKPNHVAFMAVLTACS 452
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET--EPY-------------VW 108
+ GL++E K F+ M DF + +EHY DLL E Y +W
Sbjct: 453 HGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIW 512
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
LL ACR+H N+ + E VA +DP N Y
Sbjct: 513 ATLLSACRVHXNIDMAEKVANRILEVDPNNTGAY 546
>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
Length = 646
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + +++VV W+ +I + +HGQ A++ F ++ + P++V + +L ACS
Sbjct: 327 AQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATA-PDSVAMVGLLSACS 385
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
++G+ +EG K F M D+ L LEHY VDLL + VW
Sbjct: 386 HAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVW 445
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALLGAC+IH NV++GE + L+P N YY
Sbjct: 446 GALLGACKIHKNVEMGEEAFERVVSLEPANVGYY 479
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---KPNNVTFLSILFACSYSGLIEE 70
+++V W+ +I++HA +G EA+E Y + +G +P+ VT + +L +C+++G
Sbjct: 231 RDLVSWNAVISAHAQNGLAVEAVE-LYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRV 289
Query: 71 GIKV 74
G+ V
Sbjct: 290 GLDV 293
>gi|341606141|gb|AEK83173.1| At1g74600-like protein [Capsella grandiflora]
gi|341606143|gb|AEK83174.1| At1g74600-like protein [Capsella grandiflora]
gi|341606145|gb|AEK83175.1| At1g74600-like protein [Capsella grandiflora]
gi|341606147|gb|AEK83176.1| At1g74600-like protein [Capsella grandiflora]
gi|341606149|gb|AEK83177.1| At1g74600-like protein [Capsella grandiflora]
gi|341606177|gb|AEK83191.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ P+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXXPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DAE F + ++ VV WS MI A HG + ALE F ++ +G PN++T S+L
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV--DEGINPNHITMTSVL 613
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL++E + F+ M F +D EHY +DLL +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGA R+H + ++G+L A+ F L+P+ + L
Sbjct: 674 ASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + D +VV W+ +I+ ++G + A+E L + S PN SIL
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE-LLLQMKSSGLVPNVFMLSSILK 311
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ +G + G ++ M+
Sbjct: 312 ACAGAGAFDLGRQIHGFMI 330
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F GI ++++ W+ MI A HG EAL+ F+ + +C P+ VTF+ +L AC
Sbjct: 240 AMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGIS-PDKVTFVGVLCACK 298
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL+E+G+ F+ M DF + +EH G VDLL+ + + +W
Sbjct: 299 HMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIW 358
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LLGA +++ V GEL K+ L+P+N A + L
Sbjct: 359 ATLLGASKVYKKVDTGELALKELIKLEPRNPANFVML 395
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ ER+F ++++NV W+G+I +A +G+ E L +F ++ PN+ T +L
Sbjct: 134 MEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLS 193
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G +V
Sbjct: 194 ACAKLGAFDFGKRV 207
>gi|302760059|ref|XP_002963452.1| hypothetical protein SELMODRAFT_70490 [Selaginella moellendorffii]
gi|300168720|gb|EFJ35323.1| hypothetical protein SELMODRAFT_70490 [Selaginella moellendorffii]
Length = 176
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE F + +NV+ W+GMI ++A +G +ALE + ++ PN++TF+S+L
Sbjct: 15 VEDAEETFWDMRSRNVISWTGMITAYAQNGYNSKALEMLH-AMNLEGVSPNDITFVSVLS 73
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL + G+ M+ D+ L ++HY +D++ E +P
Sbjct: 74 ACSHGGLSKRGLGYLASMLADYGLAPTIDHYVCAIDVVGRSGEAGEASTIAKAMPFEPDP 133
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W ++L AC + + +G + A+ LDPKNDA Y
Sbjct: 134 VAWTSILAACSVQQDASLGAVAAEKFRDLDPKNDASY 170
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 17/148 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE +F ++KN V ++ MI S+ HG AL F+ ++ S KP++VTF++IL ACS
Sbjct: 579 AENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLG-SGIKPDSVTFVAILSACS 637
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGET-EPY--------------V 107
Y+GL++EG+++F M ++++ + EHY D+L G E Y +
Sbjct: 638 YAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRI 697
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLD 135
WG+LLGACRIH ++G++VA ++
Sbjct: 698 WGSLLGACRIHGEFELGKVVANKLLEME 725
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
D++ W+ MIA + +G E F +I + +PN VT SIL AC+ G I G
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGK 545
Query: 73 KVFDIMVHDF 82
++ + F
Sbjct: 546 QIHGFAIRCF 555
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF +++N +W+ MI + + EA++ F V+ ++VTFLS L
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALT 330
Query: 61 ACS 63
A S
Sbjct: 331 AIS 333
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV W+ MI A HG R+A + FY ++ S PN VTF+++L
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLS-SHVSPNEVTFMAVLS 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+EEG ++F M F ++ +HY VDL E
Sbjct: 416 ACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL G+C +H + ++G+ A L P + YT L
Sbjct: 476 VVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLL 515
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA+++F + +NVV W+ +IA + + + F ++ SD PN T S+L A
Sbjct: 257 DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLK-SDVAPNEKTLSSVLSA 315
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C++ G + G +V M+ + +++N +DL
Sbjct: 316 CAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDL 350
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A R+F G DK+VV W+ MI +G EA+ +++ + + N +T +S+L A
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM-VYFVEMKKTGVAANEMTVVSVLKA 213
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + DK+VV+WS MI + +HG +EA+ Y + + PN+ TF+ +L AC
Sbjct: 341 ARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAI-CLYNEMKQAGVCPNDGTFIGLLTACK 399
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY-------------VW 108
SGL++EG ++F +M D ++ + +HY VDLL + Y VW
Sbjct: 400 NSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 458
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+IH V++GE+ A+ F LDP N +Y L
Sbjct: 459 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQL 495
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + DK+VV+WS MI + +HG +EA+ Y + + PN+ TF+ +L AC
Sbjct: 356 ARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAI-CLYNEMKQAGVCPNDGTFIGLLTACK 414
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY-------------VW 108
SGL++EG ++F +M D ++ + +HY VDLL + Y VW
Sbjct: 415 NSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 473
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL AC+IH V++GE+ A+ F LDP N +Y L
Sbjct: 474 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQL 510
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D R+F + +++V+ WS MI A HG+ REA+E F + + +P+ +TF+ +L
Sbjct: 300 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ-EMQKAKIEPSIITFVGLLT 358
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+ EG++ F+ M D+ ++ +EHYG V+LL + +
Sbjct: 359 ACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDS 418
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR H N+KI + + L+P + Y L
Sbjct: 419 PIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLL 458
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 90/145 (62%), Gaps = 16/145 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A+ +F + D++V+ ++ MI+ +++G+ R+A+E F +++ +P NVTF+ +L
Sbjct: 293 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVG-RRLRPTNVTFVGVLN 351
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+ GL++ G ++F M D++++ +EHYG VDLL T + P
Sbjct: 352 ACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 411
Query: 106 YVWGALLGACRIHHNVKIGELVAKD 130
+ G LL AC++H N+++GE VAK+
Sbjct: 412 IMLGTLLSACKMHKNLELGEQVAKE 436
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 1 MDDAERIFG----GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
+ DA R+F ++ K+ V W+ MI + + ALEAF + + +PN T +
Sbjct: 188 LGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFR-GMQGENVRPNEFTIV 246
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNL 88
+L ACS G +E G V M F+++LNL
Sbjct: 247 CVLSACSQLGALEIGRWVHSYM-RKFEIELNL 277
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 19/159 (11%)
Query: 1 MDDAERIFGG--IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+D A +F + +++V W+ +I+ + +HG +EALE F + +PN++TF SI
Sbjct: 354 LDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSR-MQVEGVEPNDITFTSI 412
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP 105
L ACS++GLI+EG K F M + ++HY VD+L + P
Sbjct: 413 LSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRP 471
Query: 106 Y--VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALL ACRIH N ++GE+ A + F L+P++ YY
Sbjct: 472 SDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYY 510
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++N + W+ M++ + +G+ +AL F + S+ PN VT L ++
Sbjct: 253 ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN-QMQASECDPNPVTALIMVS 311
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETE 104
ACSY G G K+ + ++ ++D++ +D+ GE +
Sbjct: 312 ACSYLGSKHLGRKLHNFVISS-KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERD 370
Query: 105 PYVWGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W L+ +H H + EL ++ ND +TS+
Sbjct: 371 VSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSI 412
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DAE F + ++ VV WS MI A HG + ALE F ++ +G PN++T S+L
Sbjct: 463 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV--DEGINPNHITMTSVL 520
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL++E + F+ M F +D EHY +DLL +
Sbjct: 521 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 580
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGA R+H + ++G+L A+ F L+P+ + L
Sbjct: 581 ASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 621
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + D +VV W+ +I+ ++G + A+E L + S PN SIL
Sbjct: 160 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE-LLLQMKSSGLVPNVFMLSSILK 218
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ +G + G ++ M+
Sbjct: 219 ACAGAGAFDLGRQIHGFMI 237
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++NVV W+ MI+ + +G +A+E F+ + + PN++TF+++L
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR-NGLLPNSITFVAVLS 321
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+ EG +VF+ M +++L +EH+ VD+L E P
Sbjct: 322 ACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAP 381
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W A+LGAC++H N +G VA+ +P N A+Y L
Sbjct: 382 AIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVIL 421
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A ++F + D++VV W+ MI+ + +G +EA+ F + +PN+ TF+S+L AC
Sbjct: 164 NARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGV-EPNSATFVSVLSAC 222
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNL 88
++ G G V + V + LDLN+
Sbjct: 223 AHLGAFILGCWVHEYAVGN-GLDLNV 247
>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AER+F I + V W+ MI+ ++ +G E AL Y + +P+ +TFL +L AC
Sbjct: 392 AERVFKSIREPCVATWNTMISGYSWYGLEHNALNC-YSKMREQGLEPDRITFLGVLAACI 450
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YVW 108
+ GL+ EG K F IM +F + NL+H V LL E+EP VW
Sbjct: 451 HGGLLHEGKKHFQIMTEEFGMVPNLQHCACMVGLLGRAGLFEEALLFIKNMESEPDSAVW 510
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL AC IH +K+GE +AK + LD KN Y
Sbjct: 511 GALLNACCIHQEIKLGECLAKKLYLLDYKNCGLY 544
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++F + K++V+W+ MI + +HG ++A++ F ++ + P++V+FL++L+
Sbjct: 618 LSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQ-TGVTPDHVSFLALLY 676
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS+S L+ EG D+M+ ++L+ EHY VDLL +G+TE
Sbjct: 677 ACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKS 736
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW +LLGACR+H N ++ + A L+P N Y
Sbjct: 737 VVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNY 773
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + K++V W+ MI +A G EAL + + +D +P++V +SIL A
Sbjct: 522 KMFETVEQKDIVTWTSMINCYANSGLLNEAL-VLFAEMQSTDVQPDSVALVSILGAIGGL 580
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGE 125
+ +G + VH F + N V L + G+L GA ++ + VK +
Sbjct: 581 SSLAKGKE-----VHGFLIRRNFHMEEAIVSSLVDMYSG---CGSLSGALKVFNAVKCKD 632
Query: 126 LV 127
+V
Sbjct: 633 MV 634
>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R F I KNVV WS MI++ I+G EAL F I + KPN VT LS+L ACS+
Sbjct: 507 RAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFE-KIKQNGTKPNAVTALSLLSACSHG 565
Query: 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVW 108
GL+EEG+ F MV ++ LEHY VD+L+ E +W
Sbjct: 566 GLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIW 625
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G LL +CR + N+ +G A L+P + A Y
Sbjct: 626 GTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGY 659
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F G+ K+VV WS MIA A +G+ EA+ F + + PNNV+ ++++ AC+
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNE--EVIPNNVSIMNLMEACA 462
Query: 64 YSGLIEE-----GIKVFDIMVHDFQLDLN-LEHYGITVDLLAT-------GETEPYVWGA 110
S + + GI V + + + + ++ Y D+ A+ + W A
Sbjct: 463 VSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSA 522
Query: 111 LLGACRIH 118
++ A RI+
Sbjct: 523 MISAFRIN 530
>gi|302820554|ref|XP_002991944.1| hypothetical protein SELMODRAFT_134394 [Selaginella moellendorffii]
gi|300140330|gb|EFJ07055.1| hypothetical protein SELMODRAFT_134394 [Selaginella moellendorffii]
Length = 195
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ ++ RIF + ++VV W+ MI+S+A G+ E+LE F+L + KP++VTF S+L
Sbjct: 22 LGESRRIFDEMPFRDVVCWNSMISSYAGSGRGEESLEVFHL-MDLDGTKPDHVTFSSVLT 80
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETE------PYV--- 107
ACS+ GL+ G ++F ++ D + EHY +D+LA GE E P+V
Sbjct: 81 ACSHLGLLNSGWRMFVVLAVDHGVPPRQEHYASMIDILARLGKLGEAEELVKSMPFVPDL 140
Query: 108 --WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGA R+H N K+G AK HL K + + L
Sbjct: 141 QEWATLLGASRVHRNKKLGMEAAKSAIHLGTKTSSTFVLL 180
>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510 [Vitis vinifera]
gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 16/148 (10%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+++VV WS +I+++A+HG R ALE F + + +P+ +TFL +L ACS++GL +E +
Sbjct: 246 ERDVVAWSSLISAYALHGDARTALETFEQ-MEMAKVQPDGITFLGVLKACSHAGLADEAL 304
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRI 117
F M D+ ++ + +HY VD L+ ++ WGALLGACR
Sbjct: 305 GYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKSTAKTWGALLGACRT 364
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ V++ E+ + F L+P N A Y L
Sbjct: 365 YGEVELAEIAGRALFELEPDNAANYVLL 392
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + ++V+ WS MI A HG+ REA+ A + + ++ KPN +TF+ +L
Sbjct: 278 IDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAI-AIFERMKQTNIKPNGITFVGLLS 336
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++G EEG+ FD M DF ++ +EHYG VDLL + +
Sbjct: 337 ACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDS 396
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR H N+++ + + L+P + Y L
Sbjct: 397 KIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLL 436
>gi|295828400|gb|ADG37869.1| AT1G13410-like protein [Neslia paniculata]
Length = 185
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F GI ++++ W+ MI A HG EAL+ F+ + +C +P+ VTF+ +L AC
Sbjct: 20 AMEVFKGIKRRDLISWNTMINGFAAHGHGTEALDLFHEMKNCGI-RPDKVTFVGVLCACK 78
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+ GL+E+G+ F M DF + +EH G VDLL+ + + +W
Sbjct: 79 HMGLVEDGLAYFSSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIW 138
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LLGA +++ V IGEL + L+P+N A + L
Sbjct: 139 ATLLGASKVYKKVDIGELALVELIKLEPRNPANFVML 175
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 17/145 (11%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+++V W+ +I+ + +HG +EALE F + +PN++TF SIL ACS++GLI+EG
Sbjct: 399 ERDVSSWNVLISGYGVHGHGKEALELFSR-MQVEGVEPNDITFTSILSACSHAGLIDEGR 457
Query: 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--VWGALLGACRI 117
K F M + ++HY VD+L + P VWGALL ACRI
Sbjct: 458 KCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 516
Query: 118 HHNVKIGELVAKDPFHLDPKNDAYY 142
H N ++GE+ A + F L+P++ YY
Sbjct: 517 HGNTELGEIAANNLFQLEPEHTGYY 541
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++N + W+ M++ + +G+ +AL F + S+ PN VT L ++
Sbjct: 284 VERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQ-MQASECDPNPVTALIMVS 342
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----------------GETE 104
ACSY G G K+ + ++ ++D++ +D+ GE +
Sbjct: 343 ACSYLGSKHLGRKLHNFVISS-KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERD 401
Query: 105 PYVWGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W L+ +H H + EL ++ ND +TS+
Sbjct: 402 VSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSI 443
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
++VV W+ +I+ + +HG EA++ F +IH P+ +TF+S+L ACS++GL+ EG
Sbjct: 347 RDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGF-SPSIITFISVLGACSHAGLVNEGKM 405
Query: 74 VFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIH 118
+F+ MV ++ + EHY VDLL E P VWGALLGACRIH
Sbjct: 406 LFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIH 464
Query: 119 HNVKIGELVAKDPFHLDPKNDAYYTSL 145
+V+ E+ F L+P+N Y L
Sbjct: 465 GHVEYAEIACSHLFDLEPRNAGNYVLL 491
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSILFAC 62
AE +F + ++NVV WS MI +A + + +A+E F ++ +D PN++T +S+L AC
Sbjct: 233 AESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNAC 292
Query: 63 SYSGLIEEG 71
+ + G
Sbjct: 293 AGVNALSHG 301
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++ A+ F + KNVV WS ++A++A +G+E A F+ + DG PN VTF S+L
Sbjct: 776 LEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQ--DGVLPNIVTFTSVL 833
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL +EG F M D L+ EHYG V+LLA + +
Sbjct: 834 HACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPD 893
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGAC +H + + G L AK +P+N A Y L
Sbjct: 894 ASAWRSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLL 934
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F I+DK++V W+ MI ++A + E +A A YL + + PN+VT +++L
Sbjct: 674 VEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAF-ALYLEMVENQMPPNDVTLITLLD 732
Query: 61 ACSYSGLIEEG 71
+CS + +E G
Sbjct: 733 SCSSTCKMERG 743
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA R+F I K+ V W+ +++++A G R+A+ + P+++TF++IL++C
Sbjct: 364 DASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAI-FLSRQMQVEGFVPDDITFITILYSC 422
Query: 63 SYSGLIEE 70
S S L+++
Sbjct: 423 SQSALLKQ 430
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D+A +F I +V+ WS IA++ GQ EA++ F L ++ KPN T S+L A
Sbjct: 265 DEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKTFEL-MNLEGVKPNATTLTSVLRA 320
Query: 62 CSYSGLIEEGIKV 74
C+ G E+G ++
Sbjct: 321 CATVGAHEQGRRI 333
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA F GI +NV W+ +I+ +G+ E LE + + N +TF+S+L
Sbjct: 472 LDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLE-LLKSMDLEGTEANKITFISLLG 530
Query: 61 ACSYSGLIEEG 71
ACS +G + G
Sbjct: 531 ACSVTGDLSLG 541
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F ++ ++VV W+ +I+++A G EAL+ Y + +P+ VT +S+L
Sbjct: 573 LDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQ-LYRRMEQEFSRPDAVTLISVLE 631
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ + EG + + +V
Sbjct: 632 ACASLRALVEGKAIHERIV 650
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F +V W+ +IA++ HG+ A A + +H + N +TFL++L
Sbjct: 162 LDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAF-ATWSKMHQEGLRSNEITFLTVLD 220
Query: 61 ACSYSGLIEEGIKVFDIMVH---DFQLDL 86
CS ++E G V + + DF L +
Sbjct: 221 TCSSLEVLETGKHVHRLALGSGLDFSLRM 249
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A F + +++++ W+ MI +A H ++A++ Y KP+ VTF S+L
Sbjct: 61 VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQ-LYAYSRLEGTKPDEVTFASLLN 119
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
AC SG ++ F M+H+
Sbjct: 120 ACFASGDLK-----FGRMLHE 135
>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
Length = 1359
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
AE IF + K+++ W+ MI + HG R AL F + + P++VTFLS++ AC+
Sbjct: 1130 AENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGE-TPDDVTFLSLISACN 1188
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
+SG +EEG F+IM D+ ++ +EHY VDLL E + +W
Sbjct: 1189 HSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIW 1248
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LL A R HHNV++G L A+ ++P+ + Y L
Sbjct: 1249 LCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQL 1285
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+AE +F ++DK + IW+ M+A++ + ALE F + S P++ T +++ C
Sbjct: 824 EAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKS-VLPDSFTLSNVISCC 882
Query: 63 SYSGLIEEGIKV-FDIMVHDFQLDLNLEHYGITVDLLATGETEPYV------------WG 109
S GL + G V ++ Q +E +T+ +T+ Y+ WG
Sbjct: 883 SMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWG 942
Query: 110 ALL-GACR 116
+L+ G C+
Sbjct: 943 SLISGLCK 950
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 16/155 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M D++ +F +++ V W+ M+ +A HG EAL+ F + + KPN+ TF+S+L
Sbjct: 636 MQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFE-SMQLVNVKPNHATFVSVLR 694
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+++G+ FD+M+ ++ LD EHY VD+L E +
Sbjct: 695 ACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADA 754
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
+W LL C+IH NV++ E + LDP++ +
Sbjct: 755 VIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSS 789
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F + ++ V W+ +IA+ +G E E L F +IH S +P++ T+ S+L AC
Sbjct: 436 EASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIH-SRMEPDDFTYGSVLKAC 494
Query: 63 SYSGLIEEGIKV 74
+ + G+++
Sbjct: 495 AGRQALNTGMEI 506
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + + ++V W+ I+ HA +G EAL F ++ C KPN+VTF+++L
Sbjct: 436 LDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFIAVLT 494
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+E+G D M+ + + ++HY +D+ A E +
Sbjct: 495 ACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDA 554
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W L C H N+++G++ ++ LDP++ A Y
Sbjct: 555 MSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGY 591
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+ + W+ M+ + +HG+ EAL+ F + + P+++TFL +L+
Sbjct: 424 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLY 482
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS+ G++++G+ FD M D+ L EHY +DLLA E
Sbjct: 483 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTA 542
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VW ALL ACR+H NV++ E ++ +ND YT
Sbjct: 543 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYT 580
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I ++V W+ +IA ++ G EAL F +I S PN VT +S+L AC+ G +G
Sbjct: 217 IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQG 275
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLL 98
+++ + + L L+ + G DL+
Sbjct: 276 MEIHAYSLKNCLLTLDNDFGGEDEDLM 302
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI HA +G +AL+ F +I G PN T IL
Sbjct: 320 ARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILM 379
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLD 85
AC++ I G ++ ++ Q D
Sbjct: 380 ACAHLAAIRIGKQIHAYVLRHHQYD 404
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+ F I NV W+ +I HA HG EA+ F +I PN TF+ +L AC
Sbjct: 520 EAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIE-QGLAPNGATFVGVLSAC 578
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S +GL+ EG+K+F M + + LEHY VDLL E + V
Sbjct: 579 SRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVV 638
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC ++++GE VA+ F DPK + Y L
Sbjct: 639 WGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVIL 676
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQE-REALEAFYLVIHCSDGKPNNVTFLSIL 59
MDDA +F + ++VV W+ +I+ + +G +ALE F L++ + PN TF ++
Sbjct: 220 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVV 279
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC G++ G V +++
Sbjct: 280 RACGRLGILSVGRTVHGLLM 299
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + + VV W+ MI+S++ HG+ EAL Y +H S K + TF S+L
Sbjct: 88 LDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVY-SMHRSHMKLSESTFSSVLS 146
Query: 61 ACSYSGLIEEG 71
C+ + +G
Sbjct: 147 VCARLRCLRDG 157
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+K+ V W+ MI+ + GQ EAL+ Y+ +H + TF ++ ACS G +++G
Sbjct: 429 EKDPVTWNSMISGYIHSGQPEEALK-LYITMHRLSIQQTRSTFSALFHACSCLGSLQQG 486
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76
V+WS MIA++ HG+ EA+ F + G N+VTFLS+L+ACS++GL E+G+ F
Sbjct: 257 VLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLG-GNDVTFLSLLYACSHNGLKEKGMGFFK 315
Query: 77 IMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIHHNV 121
+MV + L LEHY VDLL E + +W LL ACRIH N
Sbjct: 316 LMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNA 375
Query: 122 KIGELVAKDPFHLDPKNDAYYTSL 145
+ A++ L+P++ A Y L
Sbjct: 376 DMATRTAEEILRLNPQDSATYVLL 399
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA+ F G+ DK VV WS MI A HG + AL+ F ++ PN++T S+L
Sbjct: 558 IEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVD-ERIAPNHITLTSVLC 616
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL++E F M F +D EHY +DLL E
Sbjct: 617 ACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANA 676
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL A R+H + ++G+L A+ F L+P+ + L
Sbjct: 677 AVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLL 716
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 1 MDDAERIFG-GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+D+A R+F D+N V W+GM+++ + + +A+E F ++ S +PN F ++
Sbjct: 151 VDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVW-SGVRPNEFGFSCVV 209
Query: 60 FACSYSGLIEEGIKVFDIMVHD------FQLDLNLEHYGITVDL----LATG---ETEPY 106
AC+ S +E G KV ++V F + ++ Y D+ L G +T+
Sbjct: 210 NACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVV 269
Query: 107 VWGALLGACRIH 118
W A + C +H
Sbjct: 270 SWNAFISGCVLH 281
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+DDA R+F + KN V W+ MI++ A HG+ +E+L F + +PN+++F+ +L
Sbjct: 379 LDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVL 438
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC ++GL++EG ++FD+M F L +EH+ VDLLA + +
Sbjct: 439 SACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPD 498
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
V GALLGAC+ NV + E V ++P N Y
Sbjct: 499 EVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNY 536
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A R+F ++ K+VV W+ MI +A +G EA+ F + S P+ +T + +L
Sbjct: 278 LSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFS-GMRESGVNPDKITLVGVLS 336
Query: 61 ACSYSGLIEEG 71
AC+ G ++ G
Sbjct: 337 ACASIGALDFG 347
>gi|341606117|gb|AEK83161.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 24 IEDCCKAFSQINVPDLIAWTALIASXAQHGKATEALQMYNLMKE-KGVKPDKVTFVGVLS 82
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 83 ACSHGGLVEEGYLHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 142
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 143 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 182
>gi|357120134|ref|XP_003561784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Brachypodium distachyon]
Length = 466
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F + +++ V W+ MI A +G EA+ F ++ KP+++TF ++L AC
Sbjct: 273 EARHLFDNMAERSTVTWNSMIFGLANYGHCGEAVGLFDWMLR-EGAKPDHLTFTAVLTAC 331
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
SY G++E+G ++ +M ++ ++ LEHY V LL E + +V
Sbjct: 332 SYGGMVEKGKGLYRVMQEEYGMEPRLEHYACMVHLLGRAGRLAEAHVFIKAMPVEPDRFV 391
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGACR H NV++ E+ A ++P N A Y L
Sbjct: 392 WGALLGACRSHGNVELAEMAASRLLTVEPGNAASYLLL 429
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 16/154 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++V +WS MI A+HG EA++ FY + ++ KPN VTF ++
Sbjct: 418 LEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQE-ANVKPNGVTFTNVFC 476
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS++GL++E +F M + + +HY VD+L E P
Sbjct: 477 ACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 536
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
VWGALLGAC+IH N+ + E+ L+P+ND
Sbjct: 537 SVWGALLGACKIHANLSLAEMACTRLLELEPRND 570
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A + + K++V W+ +I+++ +G+ EAL F+ + + K N +T +S L A
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376
Query: 62 CSYSGLIEEG------IKVFDIMVHDFQLDLNLEHYGITVDLLATGET-------EPYVW 108
C+ G +E G IK I ++ + + Y DL E + +VW
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436
Query: 109 GALLGACRIH 118
A++G +H
Sbjct: 437 SAMIGGLAMH 446
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I +K+VV W+ MI G +ALE F + D K ++VT + +L
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK-KMESEDVKASHVTMVGVLS 242
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ +E G +V + + ++++NL +D+
Sbjct: 243 ACAKIRDLEFGRRVCSY-IEENRVNVNLTLANAMLDM 278
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 16/156 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A ++F + +NV+ W+ +I+ A HG +ALE FY ++ KPN VT++++L A
Sbjct: 500 EAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIG-VKPNEVTYIAVLSA 558
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
CS+ GLI+E K F+ M ++ + +EHY VDLL + +
Sbjct: 559 CSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VW LG+CR+H N K+GE AK +P + A Y
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATY 654
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++++ +IF ++ NV+ W+ +I+ + QE+EA++ F ++H PN TF S+L
Sbjct: 299 VENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLH-GHVTPNCFTFSSVLK 357
Query: 61 ACS 63
AC+
Sbjct: 358 ACA 360
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPNNVTFLSILFACSYSGLIEEG 71
+++V WS +I+ A + E AL F ++ CS PN F ++L +CS G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164
Query: 72 IKVFDIMV 79
+ +F ++
Sbjct: 165 LAIFAFLL 172
>gi|224577437|gb|ACN57392.1| At1g74600-like protein [Capsella grandiflora]
Length = 176
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D + F I +++ W+ +IAS+A HG+ EAL+ + L+ P+ VTF+ +L
Sbjct: 16 IEDCCKAFSQIHVPDLIAWTALIASYAQHGKATEALQMYNLMKE-KGXXPDKVTFVGVLS 74
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG MV D+ ++ HY VD L E E +
Sbjct: 75 ACSHGGLVEEGYXHLKSMVKDYGIEPENRHYVCMVDTLGRSGRLREAESFINSMPIKPDA 134
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL ACR+H +V++G+L AK L+P + Y SL
Sbjct: 135 LVWGTLLSACRLHGDVELGKLAAKMAIELEPSDAGAYISL 174
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A++IF G+ K+ V WS MI + +HG AL A + S KP+ +T+ S+L ACS
Sbjct: 812 AKKIFEGLSSKDAVSWSTMINGYGLHGDSEAAL-ALLSQMRLSGMKPDGITYASVLSACS 870
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE-TEPY-------------VW 108
+ G I++G +F+ MV + + +EHY VDLL TG+ E Y +
Sbjct: 871 HGGFIDQGWMIFNSMVEE-GVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLL 929
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+LLGAC IH NVK+GE ++ F LDPKN Y L
Sbjct: 930 ESLLGACIIHGNVKLGEKISSLLFELDPKNSGSYVML 966
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F +KNVVIW+ MI+++A + + EA + F ++ ++ +PN VTF+SI+ C
Sbjct: 310 ARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLK-ANMQPNVVTFVSIIPCCE 368
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
S G K V ++LD L
Sbjct: 369 NSANFWYG-KSLHAHVMKYRLDSQLS 393
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F ++++V W+ MI+ ++ HGQ ++ALE F + + + VTF+ ++
Sbjct: 546 IDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFD-EMQKRNMDVDAVTFIGVIT 604
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+E+G K F+ M++D ++ ++HY +DL + P+
Sbjct: 605 ACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGA 664
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LLGA R+H NV++GEL A+ L P++ A Y L
Sbjct: 665 TVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLL 704
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
DA ++F I K+++ WS M+A +A G+ EA + F+ +I +G KPN TF S++ A
Sbjct: 446 DAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLI--KEGIKPNEFTFSSVINA 503
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90
C+ E K F H + + + L +
Sbjct: 504 CASPTAAAEQGKQF----HAYAIKMRLNN 528
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA +F + ++ V W+ MIA + +GQ+ E E F + + KP ++TF S++
Sbjct: 245 LRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFN-KMQLAGVKPTHMTFASVIK 303
Query: 61 ACS 63
+C+
Sbjct: 304 SCA 306
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F +K+++ W+G+IA++A HG EA+ Y + + +PN+VT++ +L ACS
Sbjct: 380 ARKLFDLSREKDLISWNGIIAAYAHHGVGIEAI-LLYEKMQENGYRPNDVTYVVLLSACS 438
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP---YV 107
+SGL++EG+K+F+ MV+D + + EHY +DL + + +P V
Sbjct: 439 HSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSV 498
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W ALLG C H N IG L A++ +P N YT L
Sbjct: 499 WSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLL 536
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA ++F G D +VV W+ +++++A G R+A E F D + N VT+ ++L
Sbjct: 60 DARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELF----DRPDARRNVVTWTALLSGY 115
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLN--LEHYG 92
+ + L++E +F M + N LE Y
Sbjct: 116 ARARLVDEAEALFQRMPQRNVVSWNTMLEAYA 147
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + ++NVV W+ M+ + + G++ E + + + +PN VTFL L
Sbjct: 276 LKRARELFDEMPERNVVTWTTMMNGY-LKGKQSELALGLFSGMLMAGTRPNQVTFLGALD 334
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDLNLE 89
ACS + EG +V ++ FQ D +E
Sbjct: 335 ACSDLAALCEGKQVHQMICKTTFQFDAFVE 364
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +KNV+ WS MI AI+GQ ++AL F + KPN VTF+ IL
Sbjct: 319 VERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFS-QMEMQGVKPNEVTFIGILN 377
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+S L++EG F M + L N H+ VDL ++ P+
Sbjct: 378 ACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNS 437
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACRIH + ++GE V K LDP + Y L
Sbjct: 438 AIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLL 477
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+F + D++VV WS MI + + +E L F ++ +PN ++ L AC
Sbjct: 220 SARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMG-EKIEPNESVLVNALSAC 278
Query: 63 SYSGLIEEG 71
++ G +E+G
Sbjct: 279 AHLGAMEQG 287
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + K+ + W+ M+ + +HG+ EAL+ F + + P+++TFL +L+
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLY 589
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT---------------GETEP 105
ACS+ G++++G+ FD M D+ L EHY +DLLA E
Sbjct: 590 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTA 649
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143
VW ALL ACR+H NV++ E ++ +ND YT
Sbjct: 650 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYT 687
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
I ++V W+ +IA ++ G EAL F +I S PN VT +S+L AC+ G +G
Sbjct: 324 IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQG 382
Query: 72 IKVFDIMVHDFQLDLNLEHYGITVDLL 98
+++ + + L L+ + G DL+
Sbjct: 383 MEIHAYSLKNCLLTLDNDFGGEDEDLM 409
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 4 AERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILF 60
A IF I ++NVV W+ MI HA +G +AL+ F +I G PN T IL
Sbjct: 427 ARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILM 486
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLD 85
AC++ I G ++ ++ Q D
Sbjct: 487 ACAHLAAIRIGKQIHAYVLRHHQYD 511
>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial; Flags: Precursor
gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +KNV W+ MI + +G EALE F + +PN VTFL L
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRI-EPNYVTFLGALS 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++G ++F+ M D+ + +EHY VDL+ +
Sbjct: 383 ACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDS 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
+W ALL +C +H NV++ + A + F L D + AY
Sbjct: 443 DIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAY 480
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF K++V+++ M+ + G+ + Y+ + + PN TF S++
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIG 281
Query: 61 ACS 63
ACS
Sbjct: 282 ACS 284
>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +KNV W+ MI + +G EALE F + +PN VTFL L
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRI-EPNYVTFLGALS 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++G ++F+ M D+ + +EHY VDL+ +
Sbjct: 383 ACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDS 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
+W ALL +C +H NV++ + A + F L D + AY
Sbjct: 443 DIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAY 480
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF K++V+++ M+ + G+ + Y+ + + PN TF S++
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIG 281
Query: 61 ACS 63
ACS
Sbjct: 282 ACS 284
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DAE F + ++ VV WS MI A HG + ALE F ++ +G PN++T S+L
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV--DEGINPNHITMTSVL 613
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL++E + F+ M F +D EHY +DLL +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA R+H + ++G+L A+ F L+P+ + L
Sbjct: 674 ASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + D +VV W+ +I+ ++G + A+E L + S PN T SIL
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE-LLLQMKYSGLVPNVFTLSSILK 311
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +G + G ++ M+
Sbjct: 312 ACSGAGAFDLGRQIHGFMI 330
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I + V W+ +I+S IHG +AL+ F + +DG K +++TF+S+L
Sbjct: 503 LEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMR--ADGVKADHITFVSLL 560
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL++E FD M ++++ NL+HYG VDL + +
Sbjct: 561 SACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQAD 620
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG LL ACRIH N ++G + +D +N YY L
Sbjct: 621 ASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLL 661
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + ++V+ W+ +I +A +G EA++A+ ++ PN T++SIL
Sbjct: 401 IDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILP 460
Query: 61 ACSYSGLIEEGIKV 74
A S+ G +++G+K+
Sbjct: 461 AYSHVGALQQGMKI 474
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A+ +F + ++VV W+ MI + +HG +ALE F L + + +PN+ TF+S+L
Sbjct: 355 MDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELF-LEMEKAGQQPNDATFISVLS 413
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++G++ EG FD+M ++++ +EHYG VDLLA +
Sbjct: 414 ACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGS 473
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL C H + ++GE+VAK L+P++ Y L
Sbjct: 474 AIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYILL 513
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
+NVV W+ ++A HA E L F ++ + PN T +S+L AC+ G + G+
Sbjct: 266 RNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMW 325
Query: 74 V 74
V
Sbjct: 326 V 326
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A++IF + K+VV+W+ MI A+HG EAL F + S P+++T++ +LF
Sbjct: 364 LGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLF 423
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEP-- 105
ACS+ GL+EE K F +M + + EHYG VDLL+ T +P
Sbjct: 424 ACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNI 483
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136
+WGALL C+IH NV + V L+P
Sbjct: 484 AIWGALLNGCQIHENVCVANQVKVRLKELEP 514
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M ++F I NVV W+ +IA + + Q EAL+ F + H + +PN +T ++ L
Sbjct: 155 MKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSH-WNVEPNEITMVNALI 213
Query: 61 ACSYSGLIEEG 71
AC++S I+ G
Sbjct: 214 ACAHSRDIDTG 224
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + +N+V W+ MI ++ + + +EAL+ F+ + S P+ TFLS+L C+
Sbjct: 266 ARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFF-DMWTSGVYPDKATFLSVLSVCA 324
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-LATGETEPYVWGALLG 113
+ + G VH + L GI D+ LAT + Y LG
Sbjct: 325 HQCALALGQT-----VHAYLLKT-----GIATDISLATALLDMYAKTGELG 365
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A+ F I NV W+ +I HA HG EA+ F +I PN TF+ +L AC
Sbjct: 480 EAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIE-QGLAPNGATFVGVLSAC 538
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S +GL+ EG+K+F M + + LEHY VDLL E + V
Sbjct: 539 SRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVV 598
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC ++++GE VA+ F DPK + Y L
Sbjct: 599 WGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVIL 636
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQE-REALEAFYLVIHCSDGKPNNVTFLSIL 59
MDDA +F + ++VV W+ +I+ + +G +ALE F L++ + PN TF ++
Sbjct: 180 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVV 239
Query: 60 FACSYSGLIEEGIKVFDIMV 79
AC G++ G V +++
Sbjct: 240 RACGRLGILSVGRTVHGLLM 259
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + + VV W+ MI+S++ HG+ EAL Y +H S K + TF S+L
Sbjct: 48 LDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVY-SMHRSHMKLSESTFSSVLS 106
Query: 61 ACSYSGLIEEG 71
C+ + +G
Sbjct: 107 VCARLRCLRDG 117
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
+K+ V W+ MI+ + GQ EAL+ Y+ +H + TF ++ ACS G + +G
Sbjct: 389 EKDPVTWNSMISGYIHSGQPEEALK-LYITMHRLSIQQTQSTFSALFHACSCLGSLHQG 446
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 4 AERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+F + K + W+ MI + A HGQ EA+ F ++ + +P+ +T++ +L AC
Sbjct: 485 ARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-AGVEPDRITYVGVLSAC 543
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++G + EG + +D + ++ Q+ + HY VDLLA E +
Sbjct: 544 SHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIA 603
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL ACR+H N ++ EL A+ +DP N Y+++
Sbjct: 604 WGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD AE +F + +++V W+ MIA + +G + +AL+ F ++H S P+ T S+L
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G +V
Sbjct: 306 ACANLGNVRIGKQV 319
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +FG + +++VV W+ MI + +G+ EA++ F +I C +PN+ T ++L
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLS 439
Query: 61 ACSYSGLIEEGIKV 74
C+ ++ G ++
Sbjct: 440 VCASLACLDYGKQI 453
>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +KNV W+ MI + +G EALE F + +PN VTFL L
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRI-EPNYVTFLGALS 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++G ++F+ M D+ + +EHY VDL+ +
Sbjct: 383 ACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDS 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
+W ALL +C +H NV++ + A + F L D + AY
Sbjct: 443 DIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAY 480
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF K++V+++ M+ + G+ + Y+ + + PN TF S++
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIG 281
Query: 61 ACS 63
AC+
Sbjct: 282 ACA 284
>gi|255685084|gb|ACU28031.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685094|gb|ACU28036.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685142|gb|ACU28060.1| At1g74600-like protein [Arabidopsis thaliana]
Length = 182
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 15 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 73
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 74 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 133
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L+P + Y SL
Sbjct: 134 LVWGILLAACKIHGEVELGKVAAKKAIELEPSDAGAYISL 173
>gi|255685062|gb|ACU28020.1| At1g74600-like protein [Arabidopsis thaliana]
gi|255685116|gb|ACU28047.1| At1g74600-like protein [Arabidopsis thaliana]
Length = 182
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 15 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 73
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 74 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 133
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L P + Y SL
Sbjct: 134 LVWGTLLAACKIHGEVELGKVAAKKAIELKPSDAGAYISL 173
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MDDA F ++ KN+V W+ MI +A +G +A+E F ++ ++ KP+ VTF+++L
Sbjct: 276 MDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYML-TTEQKPDAVTFIAVLT 334
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
CS+SGL+++ + F+ M + + + EHY +D L + +P
Sbjct: 335 GCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDP 394
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC +HHN ++G+ A+ F +DPKN + Y L
Sbjct: 395 IIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLL 434
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DAE F + ++ VV WS MI A HG + ALE F ++ +G PN++T S+L
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV--DEGINPNHITMTSVL 613
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
AC+++GL++E + F+ M F +D EHY +DLL +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGA R+H + ++G+L A+ F L+P+ + L
Sbjct: 674 ASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A IF + D +VV W+ +I+ ++G + A+E L + S PN T SIL
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE-LLLQMKYSGLVPNVFTLSSILK 311
Query: 61 ACSYSGLIEEGIKVFDIMV 79
ACS +G + G ++ M+
Sbjct: 312 ACSGAGAFDLGRQIHGFMI 330
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA RIF +K+VV W+ MIA +A HG +A+E F L++ S KP+ +T+L +L
Sbjct: 272 LKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLS 331
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
+C ++GL++EG K F++M H + +LN HY VDLL E P
Sbjct: 332 SCRHAGLVKEGRKFFNLMAEHGLKPELN--HYSCLVDLLGRFGLLQEALELIENMPMKPN 389
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR+H +V G A++ L+P A + L
Sbjct: 390 SVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQL 430
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++NVV W+ MI+ A + L+ Y + S PN+ TF ++L
Sbjct: 171 VENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLK-LYSKMRKSTSDPNDYTFTALLS 229
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ SG + +G V +H
Sbjct: 230 ACTGSGALGQGRSVHCQTLH 249
>gi|404356401|gb|AFR63193.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
gi|404356425|gb|AFR63205.1| pentatricopeptide repeat-containing protein, partial [Arabidopsis
lyrata subsp. petraea]
Length = 204
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++ + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 29 IEECCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKE-KGFKPDKVTFVGVLS 87
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS+ GL+EEG + MV D+ ++ HY VD L T P
Sbjct: 88 ACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDA 147
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+I+ +V++G+L AK L+P + Y SL
Sbjct: 148 LVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSL 187
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ + NV +S MI A+HG+ R A++ FY ++ + KPN+VTF+ +
Sbjct: 294 VEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLE-NGIKPNHVTFVGLFT 352
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS++G++E+G ++F M + + +HY DLL +T P
Sbjct: 353 ACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNG 412
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWGALLGA IH N + E+ ++ F L+P N Y
Sbjct: 413 GVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNY 449
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSIL 59
++ A+ F + KNVV WS ++A++A +G+E A F+ + DG PN VTF S+L
Sbjct: 458 LEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQ--DGVLPNIVTFTSVL 515
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL +EG F M D L+ EHYG V+LLA + +
Sbjct: 516 HACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPD 575
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGAC +H + + G L AK +P+N A Y L
Sbjct: 576 ASAWRSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLL 616
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA ++F I+DK++V W+ MI ++A + E +A A YL + + +PN+VT +++L
Sbjct: 255 VDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAF-ALYLEMVENQMRPNDVTLITLLD 313
Query: 61 ACSYSGLIEEG 71
+CS + +E G
Sbjct: 314 SCSSTCKMERG 324
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA F GI +NV W+ +I+ +G+ E LE + + N +TF+S+L
Sbjct: 53 LDDARAAFRGIHQRNVFSWTILISLLVQNGEASEGLELLKF-MDLEGTEANKITFISLLG 111
Query: 61 ACSYSGLIEEGIKV 74
ACS +G + G K+
Sbjct: 112 ACSVTGDLSLGKKI 125
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A +F ++ ++VV W+ +I+++A G EAL+ Y + +P+ VT +S+L
Sbjct: 154 LDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQ-LYRRMEQEFSRPDAVTLISVLE 212
Query: 61 ACSYSGLIEEGIKVFDIMV 79
AC+ + EG + + +V
Sbjct: 213 ACASLRTLVEGKTIHERIV 231
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D R+F + +++V+ WS MI A HG+ REA+E F + + +P+ +TF+ +L
Sbjct: 316 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ-EMQKAKIEPSIITFVGLLT 374
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+++GL+ EG++ F+ M D+ ++ +EHYG V+LL + +
Sbjct: 375 ACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDS 434
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR H N+KI + + L+P + Y L
Sbjct: 435 PIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLL 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MDDAERIFGGIIDKNVVI--WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+DDA R+F + +++ I W+ +++ +A G +ALE F+ + +P+ ++ +S+
Sbjct: 213 LDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALE-FFRRMQMVGIEPDEISLVSV 271
Query: 59 LFACSYSGLIEEG 71
L C+ G +E G
Sbjct: 272 LPDCAQLGALELG 284
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 16/155 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F I + +++ WS +I +A G +EA E F + KPN +TF+ IL
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFR-TMRGLGVKPNEITFVGILT 613
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ G++EEG+K++ M D+++ EH VDLLA + P+
Sbjct: 614 ACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDV 673
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140
VW LL AC++H N+++G+ A++ +DP N A
Sbjct: 674 VVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSA 708
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F I ++V W+ +IA A +E+ F + H + PN+VT LS+L
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRH-TGLVPNDVTVLSLLC 410
Query: 61 ACSYSGLIEEGIKVFDIMVH-DFQLDL 86
ACS ++ GI+V +V F LD+
Sbjct: 411 ACSEPVMLNHGIQVHSYIVKMGFNLDI 437
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA +F II K+++ W MIA + G E EAL F ++ S +PN F S
Sbjct: 250 MADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFS 309
Query: 61 ACS 63
ACS
Sbjct: 310 ACS 312
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + KNVV W+ MI+ ++ +G+E A+ Y+ + S P++ TF SI+
Sbjct: 149 LKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAI-TLYVQMLRSGHIPDHFTFGSIVK 207
Query: 61 ACS 63
+CS
Sbjct: 208 SCS 210
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 4 AERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+F + K + W+ MI + A HGQ EA+ F ++ + +P+ +T++ +L AC
Sbjct: 379 ARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-AGVEPDRITYVGVLSAC 437
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++G + EG + +D + ++ Q+ + HY VDLLA E +
Sbjct: 438 SHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIA 497
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL ACR+H N ++ EL A+ +DP N Y+++
Sbjct: 498 WGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 535
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD AE +F + D+++V W+ MIA + +G + +AL+ F ++H S P+ T S+L
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 199
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G +V
Sbjct: 200 ACANLGNVRIGKQV 213
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +FG + +++VV W+ MI + +G+ EA++ F +I C +PN+ T ++L
Sbjct: 275 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLS 333
Query: 61 ACSYSGLIEEGIKV 74
C+ ++ G ++
Sbjct: 334 VCASLACLDYGKQI 347
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F + +NV+ WS MI + I+G EAL+ F + + PN+VTF+S+L ACS
Sbjct: 366 ARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFD-NMKSQNLVPNSVTFVSLLSACS 424
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV-----------W 108
+SG ++EG K F+ M D+ L EHY VDLL GE + ++ W
Sbjct: 425 HSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAW 484
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH V + +A+ ++P + Y L
Sbjct: 485 GALLSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLL 521
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F +++NVV+W+ +I+ A + EA++ F ++ S PN+ T +IL
Sbjct: 262 LDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESI-LPNHCTLAAILV 320
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
+CS G + G V M+ +
Sbjct: 321 SCSSLGSLRHGKSVHGYMIRN 341
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 4 AERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+F + K + W+ MI + A HGQ EA+ F ++ + +P+ +T++ +L AC
Sbjct: 485 ARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-AGVEPDRITYVGVLSAC 543
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
S++G + EG + +D + ++ Q+ + HY VDLLA E +
Sbjct: 544 SHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIA 603
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WG+LL ACR+H N ++ EL A+ +DP N Y+++
Sbjct: 604 WGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD AE +F + D+++V W+ MIA + +G + +AL+ F ++H S P+ T S+L
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305
Query: 61 ACSYSGLIEEGIKV 74
AC+ G + G +V
Sbjct: 306 ACANLGNVRIGKQV 319
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +FG + +++VV W+ MI + +G+ EA++ F +I C +PN+ T ++L
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLS 439
Query: 61 ACSYSGLIEEGIKV 74
C+ ++ G ++
Sbjct: 440 VCASLACLDYGKQI 453
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + DKNVV W+ MI +HA+HGQ EAL F P+ +T++ +L ACS
Sbjct: 420 ASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQ-KFKAIGIFPDEITYIGVLSACS 478
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY-----VW 108
+SGL+ EG F M + ++ EHY +DLL + P W
Sbjct: 479 HSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGW 538
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL ACR+H NV+IG+ A LDP + Y
Sbjct: 539 GALLNACRMHGNVEIGKCAADKLVGLDPSDSGIY 572
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F I ++N V WS M+A+++ EA+ F +I + +P + T +S+L
Sbjct: 315 LENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMI-AAGVEPIDATLVSVLS 373
Query: 61 ACSYSGLIEEGIKVFD--IMVHDFQLDLNLEH 90
AC+ G ++ G ++D I+ H +L +NL +
Sbjct: 374 ACAQLGCLDVGRCLYDAYIVSHKVELTVNLSN 405
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + D++VV W+ ++ +A G EA F ++ G PN VT ++
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAAS 241
Query: 61 ACSYSGLIEEGIKVFDIMVHD-FQLDLNLEH 90
A GL+ G V +V ++ +NLE+
Sbjct: 242 AAGQIGLLGLGRMVHQCVVESGVRMSVNLEN 272
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+D A ++F + +KNV WS I A++G ++ LE F + H +G PN +TF+S+L
Sbjct: 293 VDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKH--EGIAPNEITFISVL 350
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL-------------LATGETEPY 106
CS G ++EG FD M D ++ LEHYG VDL + T +P+
Sbjct: 351 KGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPH 410
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL ACR++ N+++GE ++ ++ KN Y SL
Sbjct: 411 AGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSL 451
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
A +F + ++ V W+ MIA +A GQ REAL F L+ DG K N V+ +S++ AC
Sbjct: 195 ARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQM--DGVKVNEVSMISVVTAC 252
Query: 63 SYSGLIEEG 71
++ G +++G
Sbjct: 253 THLGALDQG 261
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +K+++ W+ +I A+HG +AL F + + P+ +TF+ IL
Sbjct: 297 VETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSH-MKIAGENPDGITFIGILC 355
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+E+G F M D+ + +EHYG VDLL E +
Sbjct: 356 ACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADA 415
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACR++ NV++ EL + +PKN A Y L
Sbjct: 416 VIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVML 455
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64
ER+F + ++NV W+ +I + +G E L AF ++ PN+ T +++L AC+
Sbjct: 199 ERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACAR 258
Query: 65 SGLIEEG 71
G ++ G
Sbjct: 259 LGALDLG 265
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
E++F + K++ W+ M+A +I+GQ EAL F +I +PN +TF+++L CS
Sbjct: 331 CEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGI-EPNGITFVALLSGCS 389
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL----------LATGETEPY-----VW 108
+SGL EG ++F ++ DF + +LEHY VD+ L+ E P +W
Sbjct: 390 HSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIW 449
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
G+LL +CR++ NV + E+VA+ F ++P N Y L
Sbjct: 450 GSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVML 486
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
DA+ +F ++K+V +W+ MI++ ++HG R A A + + P+++TF+S+L AC
Sbjct: 692 DAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAF-AVFXQMELLGIXPDHITFVSLLSAC 750
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----V 107
+ GL+EEG K F+ M + + LEHY V +L PY +
Sbjct: 751 ARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACM 810
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LL ACR+H N +IGE AK F L+P N Y L
Sbjct: 811 WATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLL 848
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
MD A ++F I +N V W+ ++A + + Q EAL+ F ++ +G +P+++TF+ +
Sbjct: 588 MDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEML--GEGLQPSSITFMILF 645
Query: 60 FAC 62
AC
Sbjct: 646 PAC 648
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D AE++F +KN +W+ MIA++ G+ +AL + KP+ +T+ +IL
Sbjct: 406 DYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDAL-GLLRSMQKDGWKPDVITYNTILSG 464
Query: 62 CSYSGLIEEGIKVFDIMVH 80
+ +GL + ++ MV
Sbjct: 465 HARNGLKTQAXELLSEMVQ 483
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA+ IF + +N V W+ +I S + HG+ EAL+ F + +G KPN+VTF+ +L
Sbjct: 599 IEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ--EGLKPNDVTFIGVL 656
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+ GL+EEG+ F M + + L+ +HY VD+L
Sbjct: 657 AACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITAN 716
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC++H N++IGEL AK L+P + A Y L
Sbjct: 717 AMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLL 757
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +I + ++VV W+ MIA + H EAL F + C P+N+ S
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVW-PDNIGLASAAS 455
Query: 61 ACSYSGLIEEGIKV 74
AC+ + +G+++
Sbjct: 456 ACAGIKAMRQGLQI 469
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F I DKN+V+W+ +I + +HG EAL+ F +I S P+ V FL +L
Sbjct: 263 LNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLID-SGLHPDGVIFLCLLS 321
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
A S++G++ EG+++F+ M D+ ++ + EHY VD+L +
Sbjct: 322 AFSHAGMVAEGMELFEKM-GDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQPGK 380
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+GALLGACRIH+N+++ E +A+ F LDP N Y L
Sbjct: 381 DVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYIIL 420
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK---PNNVTFLSILF 60
+ R+F I +K++V W+ MI+ +AI+G +AL F+ ++ P++ T ++IL
Sbjct: 161 SRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILP 220
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD-LLATGETEPYVWGALLGACR 116
AC+ + I+EG+ + ++ GI +D L +G Y LL + R
Sbjct: 221 ACAQAAAIQEGLWIHSYVIKS----------GIELDAALGSGLIAMYANCGLLNSAR 267
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + D++V +W+ +I +A G EAL Y + CS N TF +L
Sbjct: 57 IEDARKVFDCLPDRDVFVWNTIIQGYANLGPFMEALN-IYEYMRCSGVAANRYTFPFVLK 115
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQ--LDLNL 88
AC G +++G K I H + LDL+L
Sbjct: 116 AC---GAMKDGKKGQAIHGHVVKHGLDLDL 142
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ DA IF + ++V+ W+ +I+++ HG REA++ F ++ G +P+++ F+++L
Sbjct: 344 LKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKML--GQGLEPDSIAFVAVL 401
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS++GL+ +G FD M + + EHY VDLL E
Sbjct: 402 AACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPN 461
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL ACRIH N+ IG + A + F L P+ YY L
Sbjct: 462 ERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLL 502
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA R+F G+ ++VV W+ MIA A G A+E F + P+ T IL A
Sbjct: 175 EDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA 234
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D +IF I N+V ++ MI A +G EALE F+ +++ KPN +TFL +L AC
Sbjct: 473 DGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLN-EGQKPNEITFLGVLSAC 531
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--V 107
++ GL+E+G F M +Q++ HY VDLL EP+ V
Sbjct: 532 THVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGV 591
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALLGA RIH + + +L A+ F L+P N A Y L
Sbjct: 592 WGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVL 629
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,428,228,227
Number of Sequences: 23463169
Number of extensions: 93609931
Number of successful extensions: 211281
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5242
Number of HSP's successfully gapped in prelim test: 861
Number of HSP's that attempted gapping in prelim test: 180254
Number of HSP's gapped (non-prelim): 19794
length of query: 145
length of database: 8,064,228,071
effective HSP length: 109
effective length of query: 36
effective length of database: 9,801,709,946
effective search space: 352861558056
effective search space used: 352861558056
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)