BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047113
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A ++F GI K+ V+W+ +I + IHG+ +ALE F ++ S+ KPN VTFLSIL
Sbjct: 417 LGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILS 476
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
ACS++GLI EG+++F +MV+D++L NLEHY + VDLL G+ + P
Sbjct: 477 ACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTP 536
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+ G LLGACRIH N ++ E VAK F L+ + YY
Sbjct: 537 QILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYY 573
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A R+F + ++V WS M++ +G +A+E F ++ SD P+ VT ++++
Sbjct: 112 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVS 171
Query: 61 ACS 63
AC+
Sbjct: 172 ACT 174
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
+A +F I +K+V+ WS +IA + +G EAL F ++ DG +PN T L +L A
Sbjct: 216 EAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMM--DDGTEPNVATVLCVLQA 273
Query: 62 CSYSGLIEEGIKVFDIMVH 80
C+ + +E+G K ++ +
Sbjct: 274 CAAAHDLEQGRKTHELAIR 292
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ +R+F + D++VV W+ +I+S+ +HG ++A++ F ++ + P VTF+S+L
Sbjct: 336 LEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML-ANGASPTPVTFVSVLG 394
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+EEG ++F+ M D + +EHY VDLL E P
Sbjct: 395 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG+LLG+CRIH NV++ E ++ F L+PKN Y L
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKPNNVTFLSIL 59
+D A +FGG+ +NVV WS MIA +A +G+ EAL F ++ D PN+VT +S+L
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
AC+ +E+G ++H + L L+ + L T
Sbjct: 293 QACASLAALEQG-----KLIHGYILRRGLDSILPVISALVT 328
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 15/151 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV +S MI A HG+ +EAL F+ ++ ++ KPN VTF+ L
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-------------TGETEPY- 106
ACS+SGL+++G +VFD M F + +HY VDLL T EP+
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHG 453
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDP 136
VWGALLGACRIH+N +I E+ A+ F L+P
Sbjct: 454 GVWGALLGACRIHNNPEIAEIAAEHLFELEP 484
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A R+ + +N +W+ +I +AI G+ EA+ A Y + + P + TF ++L AC
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAI-AMYGCMRKEEITPVSFTFSALLKAC 159
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A +F + K++V W+ M+ A + + +EALE ++ + S + + VT +
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALE-YFDRMEKSGIRADEVTVAGYIS 289
Query: 61 ACSYSG 66
AC+ G
Sbjct: 290 ACAQLG 295
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + KN V W+ MI+ + +HGQ +EAL FY +++ S P VTFL +L+AC
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN-SGITPTPVTFLCVLYAC 531
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP--YV 107
S++GL++EG ++F+ M+H + + +++HY VD+L EP V
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV 591
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACRIH + + V++ F LDP N Y+ L
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLL 629
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A ++F +K++ W+ MI+ + +G +A+ F + S+ PN VT IL
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR-EMQKSEFSPNPVTITCILS 428
Query: 61 ACSYSGLIEEGIKVFDIM 78
AC+ G + G V D++
Sbjct: 429 ACAQLGALSLGKWVHDLV 446
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + +K+ ++W+ MI+ + + E+++ F +I+ S + + T L IL
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229
Query: 61 ACSYSGLIEEGIKVFDIMV------HDFQL 84
A + + G+++ + HD+ L
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVL 259
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F I K++V W+ MIA + +HG +EA+ A + + + + + ++F+S+L+ACS
Sbjct: 553 AHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI-ALFNQMRQAGIEADEISFVSLLYACS 611
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGE--------------TEPYVW 108
+SGL++EG + F+IM H+ +++ +EHY VD+LA TG+ + +W
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
GALL CRIHH+VK+ E VA+ F L+P+N YY
Sbjct: 672 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 705
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +AE +F + K+++ W+ +I ++ + EAL F L++ P+ T +L
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507
Query: 61 ACSYSGLIEEGIKV 74
AC+ ++G ++
Sbjct: 508 ACASLSAFDKGREI 521
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F + +++V+ W+ +I + +G + L F ++ S + + T +S+
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQML-VSGIEIDLATIVSVFA 304
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
C+ S LI G V I V
Sbjct: 305 GCADSRLISLGRAVHSIGVK 324
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 21/153 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M++A +F I K+V W+ +I+ +A HG REA+ F + + KPN +TF ++L
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKF-MEMQKMGIKPNVITFTAVLT 356
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACSY+GL+EEG +F M D+ L +EHYG VDLL +
Sbjct: 357 ACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNA 416
Query: 106 YVWGALLGACRIHHNVKIGE-----LVAKDPFH 133
+WGALL ACRIH N+++GE L+A DP+H
Sbjct: 417 VIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A +F + +KN + W+ MI+ + +EAL+ F+ + SD +P+NV+ + L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFH-EMQNSDVEPDNVSLANALS 255
Query: 61 ACSYSGLIEEG 71
AC+ G +E+G
Sbjct: 256 ACAQLGALEQG 266
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F G + +W+ MI + + +L Y + CS N TF S+L ACS
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSL-LLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 64 YSGLIEEGIKV 74
EE ++
Sbjct: 127 NLSAFEETTQI 137
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A R+F + ++NV+ W+ MI A HG LE F +I KPN VT+++IL
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE-EGVKPNEVTYVAILS 583
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ GL+ EG + F+ M D ++ +EHY VDLL T P+
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV 643
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LGACR+H N ++G+L A+ LDP A Y L
Sbjct: 644 LVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
R FG ++VV WS M+A + +G+E +A++ F + PN+ + +++ ACS S
Sbjct: 124 RRFG---KRDVVSWSAMMACYGNNGRELDAIKVFVEFLELG-LVPNDYCYTAVIRACSNS 179
Query: 66 GLIEEG 71
+ G
Sbjct: 180 DFVGVG 185
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
++A ++F + + NVV W+ MI G REA+ F+L + S + + T S+ A
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIR-FFLDMVLSGFESDKFTLSSVFSA 278
Query: 62 CS 63
C+
Sbjct: 279 CA 280
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQ-EREALEAFYLVIHCSDGKPNNVTFLSIL 59
+DD ++F + D +V+ W+ +I + + EA+ F +I +PN+ TF S
Sbjct: 321 VDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAF 380
Query: 60 FAC 62
AC
Sbjct: 381 KAC 383
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 16/158 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A IF +K VV W+ MIA +A++G EAL+ F +I D KPN++TFL++L AC
Sbjct: 411 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL-DYKPNHITFLAVLQAC 469
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYV 107
++SG +E+G + F IM + + L+HY VDLL + + + +
Sbjct: 470 AHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGI 529
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGALL AC+IH NVKI E A+ F+L+P+ A Y +
Sbjct: 530 WGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEM 567
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + + V W+ MI+ +A G EAL F+ +I S KP+ VT LS++ C
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK-SGEKPDLVTLLSLISGCG 368
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 369 KFGSLETG 376
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F +D++VV+WS MI + +HG+ REA+ + Y + PN+VTFL +L
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI-SLYRAMERGGVHPNDVTFLGLLM 432
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
AC++SG++ EG F+ M D +++ +HY +DLL +P
Sbjct: 433 ACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGV 491
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALL AC+ H +V++GE A+ F +DP N +Y L
Sbjct: 492 TVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F + N+++W+ MI+ +A +G REA++ F+ +I+ D +P+ ++ S + AC+
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN-KDVRPDTISITSAISACA 334
Query: 64 YSGLIEEGIKVFD 76
G +E+ +++
Sbjct: 335 QVGSLEQARSMYE 347
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MDDAERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58
+ A +F G+ ++ +V W+ +++++A +G+ EALE F + D KP+ V +S+
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQ-MRKMDVKPDWVALVSV 228
Query: 59 L--FAC 62
L F C
Sbjct: 229 LNAFTC 234
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 20/164 (12%)
Query: 1 MDDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56
++ A +IF GI +K +VV+W +I+ + +HG AL+ F ++ S PN +TF
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVR-SGVTPNEITFT 529
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
S L ACS+SGL+EEG+ +F M+ ++ HY VDLL
Sbjct: 530 SALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPF 589
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
E VWGALL AC H NV++GE+ A F L+P+N Y L
Sbjct: 590 EPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLL 633
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD+A +F + ++V+ W+ MI + G ALE L + +PN VT S++
Sbjct: 269 MDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRL-MQFEGVRPNAVTIASLVS 327
Query: 61 ACSYSGLIEEG 71
C + + +G
Sbjct: 328 VCGDALKVNDG 338
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++D+ +F I + + W+ M+A++A HG R+A++ F L++H P++VTF +L
Sbjct: 286 LEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGIS-PDHVTFTHLLN 344
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+EEG F+ M +++D L+HY VDLL E
Sbjct: 345 ACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSS 404
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR++ + ++G A+ F L+P++ Y L
Sbjct: 405 GVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFAC 62
AE++F + ++++V W+ +I+ ++ G + E ++ G +PN VTFLS++ AC
Sbjct: 85 AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144
Query: 63 SYSGLIEEG------IKVFDIMVHDFQLDLNLEHYGITVDLLAT 100
Y G EEG + F ++ ++ + YG T DL ++
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSS 188
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65
++F + KN+V W+ MI H +G + L F + +P+ TFL++L +C
Sbjct: 190 KLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGH-EPDQATFLAVLRSCEDM 248
Query: 66 GLIE 69
G++
Sbjct: 249 GVVR 252
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA + F D++ V+WS MI+++ HGQ EA+E F + ++ + N V FL++L+
Sbjct: 328 LGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLY 387
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL ++G+++FD+MV + L+HY VDLL +T+
Sbjct: 388 ACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDI 447
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W LL AC IH N ++ + V K+ +DP + A Y L
Sbjct: 448 VIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLL 487
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ D E + + +N+V W+ +I +A +G E + Y ++ S +PN +TF+++L
Sbjct: 227 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP-ETVLYLYKMMKISGCRPNKITFVTVLS 285
Query: 61 ACSYSGLIEEGIKV 74
+CS + +G ++
Sbjct: 286 SCSDLAIRGQGQQI 299
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D +F + +NVV WS MI + ++HG+ +AL F + + +PN VTF+ +L+
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLY 453
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
CS+SGL+EEG K+F M ++ + LEHYG VDL E+ P
Sbjct: 454 GCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNV 513
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139
+WG+L+ ACRIH +++G+ AK L+P +D
Sbjct: 514 VIWGSLMSACRIHGELELGKFAAKRILELEPDHD 547
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA+ IF K++V W+ MI+++ +EAL F + CS KP+ V+ S++
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC-CSGIKPDVVSMFSVIS 352
Query: 61 ACSYSGLIEEG 71
AC+ G++++
Sbjct: 353 ACANLGILDKA 363
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A + F + +KNV W+ MIA + +HG +ALE F +I S +PN +TF+S+L
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID-SGVRPNYITFVSVLA 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL EG + F+ M F ++ LEHYG VDLL + +
Sbjct: 397 ACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDS 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL ACRIH NV++ E+ F LD N YY L
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +IF I+DK+ V ++ +++ +A G EA E F ++ N +T ++L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLE 89
+SG + G +HD + + LE
Sbjct: 299 HSGALRIG-----KCIHDQVIRMGLE 319
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY-LVIHCSDGKP----NNVTF 55
++DA ++F I +N+V W+ MI + ++G +A+ F L++ +D +++
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 56 LSILFACS 63
+S++ ACS
Sbjct: 187 VSVISACS 194
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 15/157 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A +F + +KN+V W+ +IA+ HG+ +++L F+ ++ S +P+ +TFL I+
Sbjct: 593 LKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA----------TGETEPY---- 106
+C + G ++EG++ F M D+ + EHY VDL T ++ P+
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG LLGACR+H NV++ E+ + LDP N YY
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYY 749
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D ++F ++ K+ VIW+ M+ +A G ++ F V+ PN VTF +L
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS-VMRMDQISPNAVTFDCVLS 247
Query: 61 ACSYSGLIEEGIKVFDIMV 79
C+ LI+ G+++ ++V
Sbjct: 248 VCASKLLIDLGVQLHGLVV 266
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F + + V W+ MI+ + G E+L FY +I S P+ +TF S+L +
Sbjct: 291 DDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMIS-SGVLPDAITFSSLLPS 349
Query: 62 CSYSGLIEEGIKVFD-IMVHDFQLDLNL 88
S +E ++ IM H LD+ L
Sbjct: 350 VSKFENLEYCKQIHCYIMRHSISLDIFL 377
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A IF + +++V W+ MI + HG + ALE F + KPN VTFLS++ ACS
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE-EMQKGTIKPNGVTFLSVISACS 550
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEPY--VW 108
+SGL+E G+K F +M ++ ++L+++HYG VDLL +P V+
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GA+LGAC+IH NV E A+ F L+P + Y+ L
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLL 647
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ A ++F G++++NVV W+ MI ++ + +EA+ F ++ +G KP +V+ + L
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML--DEGVKPTDVSVMGAL 344
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90
AC+ G +E G +H ++L L+
Sbjct: 345 HACADLGDLERG-----RFIHKLSVELGLDR 370
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+++A ++F + ++++V W+ ++A ++ +G R ALE + C + KP+ +T +S+L
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM--CEENLKPSFITIVSVL 243
Query: 60 FACSYSGLIEEGIKV 74
A S LI G ++
Sbjct: 244 PAVSALRLISVGKEI 258
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +FG + + +V W+ MI A +G+ +AL ++ + KP+ T++S++
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALN-YFSQMRSRTVKPDTFTYVSVIT 446
Query: 61 A 61
A
Sbjct: 447 A 447
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
IF K++++W+ +I+ +A HG EAL+ F + KPN VTF++ L ACSY+G
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVWGAL 111
++EEG+K+++ M F + HY VD+L T E + VWG+L
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
LGACR H + + E AK ++P+N Y L
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIEIEPENSGTYILL 541
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A R+F + ++N W +I H +G E EAL+ F L + +P T +SIL C+
Sbjct: 284 ARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFIL-MQKQGVRPTFPTLISILSVCA 342
Query: 64 YSGLIEEGIKVFDIMVH-DFQLDL 86
+ G +V +V F +D+
Sbjct: 343 SLASLHHGKQVHAQLVRCQFDVDV 366
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF + +++V+ W+ M+ + + + +A + F ++ + V++ S+L
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM-----PEKTEVSWTSMLM 242
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G IE+ ++F++M
Sbjct: 243 GYVQNGRIEDAEELFEVM 260
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLV 42
DA ++F + D+N++ W+G+++ + +G+ EA + F L+
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLM 105
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F + ++NVV W+ ++ + +G+ A F+ + + N V++ +L
Sbjct: 95 IDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-----PEKNKVSWTVMLI 149
Query: 61 ACSYSGLIEEGIKVFDIM 78
G I++ K+++++
Sbjct: 150 GFLQDGRIDDACKLYEMI 167
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYL-----VIHCSDGKPNNVTF 55
+DDA +IF + +K V W+ M+ + +G+ +A E F + VI C+
Sbjct: 219 VDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACN--------- 269
Query: 56 LSILFACSYSGLIEEGIKVFDIM 78
+++ G I + +VFD M
Sbjct: 270 -AMISGLGQKGEIAKARRVFDSM 291
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILF 60
+A ++F K++ W+ M+A + + R+A + F D P N +++ ++
Sbjct: 35 EARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLF-------DEMPDRNIISWNGLVS 87
Query: 61 ACSYSGLIEEGIKVFDIM 78
+G I+E KVFD+M
Sbjct: 88 GYMKNGEIDEARKVFDLM 105
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +++V+ WS MI+ A +G +EAL+ F + S KPN +T + +LF
Sbjct: 309 LEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER-MKSSGTKPNYITIVGVLF 367
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------ETEP-- 105
ACS++GL+E+G F M + +D EHYG +DLL E EP
Sbjct: 368 ACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLGACR+ N+ + E AK LDP++ YT L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA ++F + +NV+ W+ MI++++ ++ALE L++ + +PN T+ S+L
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLR 170
Query: 61 ACS--------YSGLIEEGIKVFDIMVHDFQLDL-----NLEHYGITVDLLATGETEPYV 107
+C+ + G+I+EG++ D+ V +D+ E D + TG+ V
Sbjct: 171 SCNGMSDVRMLHCGIIKEGLES-DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDA--IV 227
Query: 108 WGALLG 113
W +++G
Sbjct: 228 WNSIIG 233
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA +F ++ + ++W+ +I A + + ALE F + + T S+L A
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR-AGFIAEQATLTSVLRA 269
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNV 121
C+ L+E G++ VH + D +L VD+ G+L A R+ + +
Sbjct: 270 CTGLALLELGMQAH---VHIVKYDQDLILNNALVDMYCKC-------GSLEDALRVFNQM 319
Query: 122 K 122
K
Sbjct: 320 K 320
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ ++F I KNV+ W+ +I ++ +HG +EA++ +++ KPN VTF+S+ ACS
Sbjct: 571 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFISVFAACS 629
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY--------------V 107
+SG+++EG+++F +M D+ ++ + +HY VDLL E Y
Sbjct: 630 HSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGA 689
Query: 108 WGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
W +LLGA RIH+N++IGE+ A++ L+P ++Y L
Sbjct: 690 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
R+F G+ D+ + +W+ MIA ++ + ++EAL F + + N+ T ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 63 SYSG 66
SG
Sbjct: 416 VRSG 419
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFY----LVIHCSDG------KP 50
+D A RIFG + D+++V W+ MI + +AL + L S G KP
Sbjct: 456 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 515
Query: 51 NNVTFLSILFACSYSGLIEEGIKV 74
N++T ++IL +C+ + +G ++
Sbjct: 516 NSITLMTILPSCAALSALAKGKEI 539
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++F I ++N V W+ +I+S + ALEAF ++ + +P++ T +S++ ACS
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVVTACS 210
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSG 66
FGG +++V W+ +++S + Q EALE YL +G +P+ T S+L ACS+
Sbjct: 262 FGG---RDLVTWNTVLSSLCQNEQLLEALE--YLREMVLEGVEPDEFTISSVLPACSHLE 316
Query: 67 LIEEGIKVFDIMVHDFQLDLN 87
++ G ++ + + LD N
Sbjct: 317 MLRTGKELHAYALKNGSLDEN 337
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F G+ ++V+ W+ MI + +HG EA+ +F+ + S +PN +TFL +L
Sbjct: 259 LENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAI-SFFRKMVASGVRPNAITFLGLLL 317
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA-TGETE--------------P 105
CS+ GL++EG++ F+IM F L N++HYG VDL G+ E P
Sbjct: 318 GCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDP 377
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+W LLG+C+IH N+++GE+ K L+ N Y
Sbjct: 378 VLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDY 414
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+ ++F G+ +K+ W+ MI + IHG +EA++ F + + P+++TFL +L AC
Sbjct: 650 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFE-EMQRTGHNPDDLTFLGVLTAC 708
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPY 106
++SGLI EG++ D M F L NL+HY +D+L E +
Sbjct: 709 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 768
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W +LL +CRIH N+++GE VA F L+P+ Y L
Sbjct: 769 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLL 807
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+R+F GI K V W+ +I HA R +L+A +L + S P++ T S+L ACS
Sbjct: 449 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA-HLQMKISGLLPDSFTVCSLLSACS 507
Query: 64 YSGLIEEGIKVFDIMVHDF 82
+ G +V ++ ++
Sbjct: 508 KLKSLRLGKEVHGFIIRNW 526
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DD+ +F + KN+ W+ +I+S++ + E LE F +I +D P++ T+ ++ A
Sbjct: 137 DDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKA 196
Query: 62 CSYSGLIEEGI 72
C +G+ + GI
Sbjct: 197 C--AGMSDVGI 205
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A+ +F K++++W+ +I+ +A HG EAL+ F+ + S PN VT ++IL ACS
Sbjct: 385 AKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFH-EMPSSGTMPNKVTLIAILTACS 443
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA---------------TGETEPYVW 108
Y+G +EEG+++F+ M F + +EHY TVD+L T + + VW
Sbjct: 444 YAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVW 503
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALLGAC+ H + + E+ AK F +P N Y L
Sbjct: 504 GALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLL 540
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A IF + ++NVV W+ MI + + + A + F ++ ++ V++ S+L
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE-----VSWTSMLL 242
Query: 61 ACSYSGLIEEGIKVFDIM 78
+ SG IE+ + F++M
Sbjct: 243 GYTLSGRIEDAEEFFEVM 260
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A R+F + D++ W GMI ++ G E EAL+ F + +P+ + +SIL
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQ-MQKQGVRPSFPSLISILS 339
Query: 61 ACSYSGLIEEGIKV 74
C+ ++ G +V
Sbjct: 340 VCATLASLQYGRQV 353
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A +F + ++NVV W+ M+ + G EA F+ + + N V++ +
Sbjct: 97 EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM-----PERNEVSWTVMFGGL 151
Query: 63 SYSGLIEEGIKVFDIM-VHDFQLDLNL----------EHYGITVDLLATGETEPYVWGAL 111
G I++ K++D+M V D N+ + + D + E W +
Sbjct: 152 IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR--ERNVVTWTTM 209
Query: 112 LGACRIHHNVKIGELVAKDPFHLDP-KNDAYYTSL 145
+ R ++ V VA+ F + P K + +TS+
Sbjct: 210 ITGYRQNNRVD----VARKLFEVMPEKTEVSWTSM 240
>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470
OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
Length = 501
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D R+F + +NV+ W+ +I+ + HG+ E L+ F + +PN VTFL +L A
Sbjct: 261 SDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKE-EGCRPNPVTFLVVLTA 319
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPY 106
C++ GL+++G + F M D+ ++ +HY VD L + P
Sbjct: 320 CNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPP 379
Query: 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
VWG+LLGACRIH NVK+ EL A LDP N Y
Sbjct: 380 VWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNY 415
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + ++++ W+ MI+ + G E+E L +Y + + P+ TF S+ ACS
Sbjct: 165 LFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQ-NRIVPDQYTFASVFRACSALD 223
Query: 67 LIEEGIKVFDIMV 79
+E G + +M+
Sbjct: 224 RLEHGKRAHAVMI 236
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A +F + + NV W+ MI+++ HG ++A+E F + PNNVTF+++L AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSAC 320
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL-----------------ATGE-TE 104
+++GL+EEG V+ M ++L +EH+ VD+L ATG+ T
Sbjct: 321 AHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATA 380
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
P +W A+LGAC++H N +G +AK L+P N ++ L
Sbjct: 381 PALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVML 421
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M+ A ++F + +K++V W+ +++ +G EA++ FY + S +P++ TF+S+L
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE-SGFEPDSATFVSLLS 216
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89
AC+ +G + G V ++ + LDLN++
Sbjct: 217 ACAQTGAVSLGSWVHQYIISE-GLDLNVK 244
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + KN+ W+ +I A HG +EAL+ F + KPN VTF+S+
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF-AKMEMESVKPNAVTFVSVFT 396
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV-------------DLLATGETEP-- 105
AC+++GL++EG +++ M+ D+ + N+EHYG V +L+ E EP
Sbjct: 397 ACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNA 456
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
+WGALL CRIH N+ I E+ L+P N YY
Sbjct: 457 VIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYY 493
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++ AE +F + K+++ W+ MI ++ + + REA+ FY ++ +G P+ VT +++
Sbjct: 237 LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME--EGIIPDEVTMSTVI 294
Query: 60 FACSYSGLIEEGIKV 74
AC++ G++E G +V
Sbjct: 295 SACAHLGVLEIGKEV 309
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 15/160 (9%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF + +NVV W+ +I+ A++G+ ++ F +I PN TFL +L
Sbjct: 286 LEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLA 345
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE--TEPY------------ 106
CSY+G +E G ++F +M+ F+L+ EHYG VDL++ TE +
Sbjct: 346 CCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANA 405
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL ACR H +VK+ E+ A + ++P N Y L
Sbjct: 406 AMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLL 445
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA+++F + ++NVV+W+ MI G L F + + + V++ S++
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQM-----SERSIVSWNSMIS 207
Query: 61 ACSYSGLIEEGIKVFDIMV 79
+ S G E +++F M+
Sbjct: 208 SLSKCGRDREALELFCEMI 226
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
MD A IF + +NVV WS MI +A +G EALE F + +PN +TF+ +L
Sbjct: 271 MDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGV-RPNKITFVGVLS 329
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
AC + GL+EEG F +M +F+L+ L HYG VDLL+ E P
Sbjct: 330 ACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNV 389
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG L+G C +V++ E VA L+P ND Y L
Sbjct: 390 MVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVL 429
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DDA +F + + ++V W+ I+ HA +G EAL F ++ C KPN+VTF+++L
Sbjct: 438 LDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFIAVLT 496
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+E+G D M+ + + ++HY +D+ A E +
Sbjct: 497 ACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDA 556
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
W L C H N+++GE+ ++ LDP++ A Y
Sbjct: 557 MSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGY 593
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
+ R+F ++ K++ W+ M+ +AI+G E + F +I S P+ +TF+++L CS
Sbjct: 391 SRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE-SGVAPDGITFVALLSGCS 449
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VW 108
+GL E G+ +F+ M +F++ LEHY VD+L ET P+ +W
Sbjct: 450 DTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIW 509
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142
G+LL +CR+H NV +GE+ AK+ F L+P N Y
Sbjct: 510 GSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNY 543
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA ++F G+ ++NVV W+ +I+ + + E F + G + T +IL A
Sbjct: 288 DDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGF-SWATLTTILPA 346
Query: 62 CSYSGLIEEGIKV 74
CS + G ++
Sbjct: 347 CSRVAALLTGKEI 359
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 17/158 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF--YLVIHCSDGKPNNVTFLSI 58
+++A +F K++ W+ MI A+HG+ EA+ F + ++ +D KP+++TF+ +
Sbjct: 311 LEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGL 370
Query: 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ET 103
L AC++ GL+ +G FD+M + F ++ +EHYG +DLL +
Sbjct: 371 LNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKA 430
Query: 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141
+ +WG+LL AC+IH ++ + E+ K+ L+P N Y
Sbjct: 431 DEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGY 468
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ +A +F + +++V W+ ++A+ +G EA+ F +I+ +PN VT + +L
Sbjct: 209 ISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLS 268
Query: 61 ACSYSGLIE--EGIKVF--------DIMVHDFQLDL-----NLEHYGITVDLLATGETEP 105
AC+ +G ++ +GI F D+ V + +DL NLE + +
Sbjct: 269 ACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKM--ASKKSL 326
Query: 106 YVWGALLGACRIH 118
W +++ +H
Sbjct: 327 TAWNSMINCFALH 339
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFAC 62
A ++F + ++NVV W+ M++ +A G A+ F D +V ++ +IL AC
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALF------EDMPERDVPSWNAILAAC 234
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLN 87
+ +GL E + +F M+++ + N
Sbjct: 235 TQNGLFLEAVSLFRRMINEPSIRPN 259
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++NV+ WS MI + I+G EAL+ F+ + + PN+VTF+S+L ACS
Sbjct: 366 ARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFH-KMKSQNVVPNSVTFVSLLSACS 424
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT----GETEPYV-----------W 108
+SG ++EG K F+ M D+ + EHY VDLL GE + ++ W
Sbjct: 425 HSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAW 484
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL ACRIH V + +A+ ++P+ + Y L
Sbjct: 485 GALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLL 521
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D+A ++F +D+NVV+W+ +I+ A + EA + F ++ S PN T +IL
Sbjct: 262 LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI-LPNQCTLAAILV 320
Query: 61 ACSYSGLIEEGIKVFDIMVHD 81
+CS G + G V M+ +
Sbjct: 321 SCSSLGSLRHGKSVHGYMIRN 341
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
D+ +F + ++ V W+ MI +A HG+ EA++ F +I + KPN+VTF+SIL AC
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRAC 714
Query: 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYV 107
++ GLI++G++ F +M D+ LD L HY VD+L E + +
Sbjct: 715 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 774
Query: 108 WGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
W LLG C IH +NV++ E LDP++ + YT L
Sbjct: 775 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLL 813
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
+A R+F + ++ V W+ +IA+H +G+ E L F ++ S +P+ TF SIL AC
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR-SRIEPDEFTFGSILKAC 493
Query: 63 S 63
+
Sbjct: 494 T 494
>sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2
SV=1
Length = 517
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72
+N+V W+ MI +A +G+ EA+ F ++ ++ +PNNVT L +LFAC+++GLI+EG
Sbjct: 292 QRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGY 351
Query: 73 KVFDIMVHDFQLD--LNLEHYGITVDLLATG----ETEPYV-----------WGALLGAC 115
F+ V+D+ L LEHY VD+L+ E E + W ALLG C
Sbjct: 352 MYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGC 411
Query: 116 RIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+IH N ++ +L A LDP++ + Y L
Sbjct: 412 QIHSNKRLAKLAASKILELDPRDVSSYVML 441
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
++A +F + +++VV W+ +I + G+ EA+ F ++ PN TF + A
Sbjct: 176 EEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITA 235
Query: 62 CS 63
S
Sbjct: 236 IS 237
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + ++VV W+ MI+++ G+ +A+ A + + S P+++ F++ L
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV-ALFSKLQDSGLVPDSIAFVTTLA 418
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS++GL+EEG F +M +++ LEH VDLL E
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGACR+H + IG L A F L P+ YY L
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A ++F I ++NV+I + MI S+ +G E ++ F + C + +P++ TF +L ACS
Sbjct: 93 ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRPDHYTFPCVLKACS 151
Query: 64 YSGLIEEGIKV 74
SG I G K+
Sbjct: 152 CSGTIVIGRKI 162
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++DA +F I N V W+ +IA H HG +A+ F ++ +G KP+++TF+++L
Sbjct: 502 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML--DEGVKPDHITFVTLL 559
Query: 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETE 104
ACS+SGL++EG F++M D+ + +L+HYG VD+ + +
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALL ACR+H NV +G++ ++ F ++P++ Y+ L
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A +F + + +V+ W+ +I+ +A +G EA+E + ++ + N T++S+L
Sbjct: 400 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 459
Query: 61 ACSYSGLIEEGIKV 74
ACS +G + +G+K+
Sbjct: 460 ACSQAGALRQGMKL 473
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62
A F I +++V W+ MI+ + G E + F L + S P+ TF S+L AC
Sbjct: 105 ARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+DD + F I +++ W+ +IAS+A HG+ EAL+ + L+ KP+ VTF+ +L
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVGVLS 761
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EE + MV D+ ++ HY VD L E E +
Sbjct: 762 ACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDA 821
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWG LL AC+IH V++G++ AK L+P + Y SL
Sbjct: 822 LVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISL 861
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M +A +F I + +VV W+ M++ + ALE F + H S + NN T S++
Sbjct: 301 MAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRH-SGVEINNCTVTSVIS 359
Query: 61 ACSYSGLIEEGIKV 74
AC ++ E +V
Sbjct: 360 ACGRPSMVCEASQV 373
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
++++ ++F GI K+ W+ MI+ +G REA+ F ++ DG P+ T ++L
Sbjct: 501 LEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLD--DGTSPDESTLAAVL 558
Query: 60 FACSYSGLIEEGIKV 74
CS + G ++
Sbjct: 559 TVCSSHPSLPRGKEI 573
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+DA ++F + NV W+ +IA A+ Q A+ + + KP++ T+ S+L A
Sbjct: 202 EDAYKVFRDSLSANVYCWNTIIAG-ALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAA 260
Query: 62 CS 63
C+
Sbjct: 261 CA 262
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
++ +F + KN+V W+ ++ ++HG+ +E + F ++ + KP+ ++F S+L AC
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR-TRLKPDFISFTSLLSACG 500
Query: 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEPYVW 108
GL +EG K F +M ++ + LEHY V+LL E + VW
Sbjct: 501 QVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW 560
Query: 109 GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
GALL +CR+ +NV + E+ A+ FHL+P+N Y L
Sbjct: 561 GALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLL 597
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 12 IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71
++ NVV W+ +IA A +G++ EALE F + + KPN+VT S+L AC + G
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFR-EMQVAGVKPNHVTIPSMLPACGNIAALGHG 407
Query: 72 IKV--FDIMVH 80
F + VH
Sbjct: 408 RSTHGFAVRVH 418
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M DA ++F + DK+VV S ++ ++A G E + + S + N V++ IL
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS-EMESSGIEANIVSWNGILS 225
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGA-LLGACRIHH 119
+ SG +E + +F + H G D + P V + +L R+ H
Sbjct: 226 GFNRSGYHKEAVVMFQ----------KIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 120 NVKIGELVAKDPFHLDPKNDAYYTS 144
I + + KD + D Y S
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKS 300
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DAE+ F + KN V W+ +I +++ HG EAL++F +IH S+ +PN+VT + +L
Sbjct: 743 ISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH-SNVRPNHVTLVGVLS 801
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+ GL+++GI F+ M ++ L EHY VD+L + +
Sbjct: 802 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VW LL AC +H N++IGE A L+P++ A Y L
Sbjct: 862 LVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 901
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
+NVV+W+ M+ ++ + R + F + + PN T+ SIL C G +E G +
Sbjct: 453 ENVVLWNVMLVAYGLLDDLRNSFRIFR-QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 511
Query: 74 VF-DIMVHDFQLD 85
+ I+ +FQL+
Sbjct: 512 IHSQIIKTNFQLN 524
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA ++F + K+VV W+ MI+ +A HG +AL F +I + +P+ +TF+++L
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID-NKIRPDWITFVAVLL 393
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
AC+++GL+ G+ F+ MV D++++ +HY VDLL + P+
Sbjct: 394 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA 453
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V+G LLGACR+H NV++ E A+ L+ +N A Y L
Sbjct: 454 AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL 493
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 4 AERIFGGI-IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFA 61
AE +F + ++KN+V W+ MI+ + + + + L+ F ++ +G +PN+ S L
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE--EGIRPNSSGLSSALLG 293
Query: 62 CSYSGLIEEGIKVFDIM 78
CS ++ G ++ I+
Sbjct: 294 CSELSALQLGRQIHQIV 310
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ A ++FG + K+V+ WS MI+ +A HG A+E F + + KPN +TFL +L
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFN-EMQRAKVKPNGITFLGLLS 350
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY---- 106
ACS+ G+ +EG++ FD+M D+Q++ +EHYG +D+LA +T P
Sbjct: 351 ACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDS 410
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPF-HLDPKNDAYYTSL 145
+WG+LL +CR N+ + LVA D L+P++ Y L
Sbjct: 411 KIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPEDMGNYVLL 450
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
M A+ +F ++DK +V W+ MI+ + G EA++ F+ + + +P+ ++ +S+L
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMD-FFREMQLAGIEPDEISLISVLP 249
Query: 61 ACSYSGLIEEG 71
+C+ G +E G
Sbjct: 250 SCAQLGSLELG 260
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVI 43
DA ++F + +++V+ W+ +++ +A GQ ++A F+L++
Sbjct: 162 DAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLML 202
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ + +F + ++V +WS MI A+HG EA++ FY + ++ KPN VTF ++
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE-ANVKPNGVTFTNVFC 474
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEP----- 105
ACS++GL++E +F M ++ + +HY VD+L E P
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 534
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGALLGAC+IH N+ + E+ L+P+ND + L
Sbjct: 535 SVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLL 574
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A + + K++V W+ +I+++ +G+ EAL F+ + + K N +T +S L A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 62 CSYSGLIEEGIKVFD-IMVHDFQLDLNLEH-----YGITVDLLATGET-------EPYVW 108
C+ G +E G + I H +++ ++ Y DL + E + +VW
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 109 GALLGACRIH 118
A++G +H
Sbjct: 435 SAMIGGLAMH 444
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+D A ++F I +K+VV W+ MI G +ALE F + D K ++VT + +L
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK-KMESEDVKASHVTMVGVLS 240
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
AC+ +E G +V + + ++++NL +D+
Sbjct: 241 ACAKIRNLEFGRQVCS-YIEENRVNVNLTLANAMLDM 276
>sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing protein At1g74400
OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1
Length = 462
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-----PNNVTFL 56
+ A ++F + K+V ++ MI +A++GQ +E+LE F + + PN+VTF+
Sbjct: 221 EKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFI 280
Query: 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------- 101
+L ACS+SGL+EEG + F M+ D+ L H+G VDL
Sbjct: 281 GVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPI 340
Query: 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+ +W LLGAC +H NV++GE V + F LD + Y +L
Sbjct: 341 KPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVAL 384
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 1 MDDAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59
+D A ++F +K N+V+W+ MI+++ + EA+E F + + + V L
Sbjct: 116 VDYARQVFDETPEKQNIVLWTAMISAYTENENSVEAIELFKR-MEAEKIELDGVIVTVAL 174
Query: 60 FACSYSGLIEEGIKVFDIMV---HDFQLDLNLEHYGITVDLLATGETEP 105
AC+ G ++ G +++ + +DL L + + + + +GETE
Sbjct: 175 SACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNM-YVKSGETEK 222
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + +KNV W+ MI A HG R+A + FY ++ S PN VTF+++L
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLS-SHVSPNEVTFMAVLS 415
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC++ GL+EEG ++F M F ++ +HY VDL E
Sbjct: 416 ACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
VWGAL G+C +H + ++G+ A L P + YT L
Sbjct: 476 VVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLL 515
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
DDA+++F + +NVV W+ +IA + + + F ++ SD PN T S+L A
Sbjct: 257 DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLK-SDVAPNEKTLSSVLSA 315
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97
C++ G + G +V M+ + +++N +DL
Sbjct: 316 CAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDL 350
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D A R+F G DK+VV W+ MI +G EA+ +++ + + N +T +S+L A
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM-VYFVEMKKTGVAANEMTVVSVLKA 213
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DA R+F + +KNV W+ MI + +G EALE F + +PN VTFL L
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRI-EPNYVTFLGALS 382
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
ACS+SGL+++G ++F+ M D+ + +EHY VDL+ +
Sbjct: 383 ACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDS 442
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHL--DPKNDAY 141
+W ALL +C +H NV++ + A + F L D + AY
Sbjct: 443 DIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAY 480
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++DAE IF K++V+++ M+ + G+ + Y+ + + PN TF S++
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIG 281
Query: 61 ACS 63
ACS
Sbjct: 282 ACS 284
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 18/161 (11%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+ DA RIF +K+VV W+ MIA +A HG +A+E F L++ S KP+ +T+L +L
Sbjct: 272 LKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLS 331
Query: 61 ACSYSGLIEEGIKVFDIMV-HDFQLDLNLEHYGITVDLLATG----------ETEPY--- 106
+C ++GL++EG K F++M H + +LN HY VDLL E P
Sbjct: 332 SCRHAGLVKEGRKFFNLMAEHGLKPELN--HYSCLVDLLGRFGLLQEALELIENMPMKPN 389
Query: 107 --VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WG+LL +CR+H +V G A++ L+P A + L
Sbjct: 390 SVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQL 430
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A ++F + ++NVV W+ MI+ A + L+ Y + S PN+ TF ++L
Sbjct: 171 VENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLK-LYSKMRKSTSDPNDYTFTALLS 229
Query: 61 ACSYSGLIEEGIKVFDIMVH 80
AC+ SG + +G V +H
Sbjct: 230 ACTGSGALGQGRSVHCQTLH 249
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 3 DAERIFGGIIDK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
D++R+FG I+D+ N+V W+ M+ + HG EA+E F ++ S +P+ + F+++L A
Sbjct: 366 DSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVS-SGIRPDRIVFMAVLSA 424
Query: 62 CSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY----- 106
C ++GL+E+G+K F++M ++ ++ + + Y VDLL E P+
Sbjct: 425 CRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDES 484
Query: 107 VWGALLGACRIH-HNVKIGELVAKDPFHLDPKNDAYYTSL 145
WGA+LGAC+ H HN I L A+ L PK Y L
Sbjct: 485 TWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVML 524
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
+++A +F + D++VV W+ MI +A A E F+ ++ PN T S+L
Sbjct: 61 VEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVK-QGTSPNEFTLSSVLK 119
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHN 120
+C ++ G V ++V ++ +L +++ AT + AC I +
Sbjct: 120 SCRNMKVLAYGALVHGVVVK-LGMEGSLYVDNAMMNMYATCSV------TMEAACLIFRD 172
Query: 121 VKIGELVAKDPFHLDPKNDAYYTSL 145
+K+ KND +T+L
Sbjct: 173 IKV-------------KNDVTWTTL 184
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A +F + +NV+ WS MI AIHGQ +A++ F + + +P++V ++++L
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF-CKMRQAGVRPSDVAYINLLT 383
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----ETEPY---------- 106
ACS+ GL+EEG + F MV L+ +EHYG VDLL E E +
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 107 -VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+W ALLGACR+ NV++G+ VA + P + Y +L
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVAL 483
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQERE--ALEAFYLVIHCSDGKPNNVTFLSI 58
+D A +IF + +N W+ +I + +++ A+ FY ++ +PN TF S+
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 59 LFACSYSGLIEEGIKV 74
L AC+ +G I+EG ++
Sbjct: 135 LKACAKTGKIQEGKQI 150
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63
A +F + ++VV W+ MI+ ++++G ++A+E F + D +PN VT +S+L A S
Sbjct: 227 ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR-EMKKGDIRPNYVTLVSVLPAIS 285
Query: 64 YSGLIEEG 71
G +E G
Sbjct: 286 RLGSLELG 293
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66
+F + ++NVV W+ +IA A HG EAL F ++ + +PN+VTF++IL ACS+ G
Sbjct: 307 VFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVK-AGVRPNDVTFIAILSACSHVG 365
Query: 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG----------ETEPY-----VWGAL 111
++ G ++F+ M + + N+EHYG +DLL ++ P+ +WG+L
Sbjct: 366 WVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSL 425
Query: 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
L A +HH++++GE + L+P N Y L
Sbjct: 426 LAASNVHHDLELGERALSELIKLEPNNSGNYMLL 459
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73
+N V W+ +I+ +A G+ EA+E F ++ + +P+ VT L++L AC+ G +E G +
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRML-MENVEPDEVTLLAVLSACADLGSLELGER 271
Query: 74 VFDIMVH 80
+ + H
Sbjct: 272 ICSYVDH 278
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF 60
++ A IF I DK V W+ +I++ A +G+ ++ALE F + + S PN +T L+IL
Sbjct: 274 LEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEM-MKSSYVHPNGITLLAILT 332
Query: 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------ETEP 105
AC+ S L++ GI++F + ++++ EHYG VDL+ E +
Sbjct: 333 ACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDA 392
Query: 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
V GALLGAC+IH N ++G V K L P++ Y +L
Sbjct: 393 SVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVAL 432
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61
+ A +F + +NVV WS MI +A++G REAL F + +PN VTFL +L A
Sbjct: 262 EAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLF-TTMQNEGLRPNYVTFLGVLSA 320
Query: 62 CSYSGLIEEGIKVFDIMVH--DFQLDLNLEHYGITVDLLATG---------------ETE 104
CS++GL+ EG + F +MV D L+ EHY VDLL E +
Sbjct: 321 CSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPD 380
Query: 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145
+WGALLGAC +H ++ +G+ VA P +Y+ L
Sbjct: 381 TGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLL 421
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSIL 59
+ AE +F + K++V W+ +A G ALE F + C+D + ++ T +S+L
Sbjct: 160 LSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM--CADAVQFDSFTVVSML 217
Query: 60 FACSYSGLIEEGIKVFD----------IMVHDFQLDLNLE 89
AC G +E G +++D I+V + +LD++L+
Sbjct: 218 SACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLK 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,701,640
Number of Sequences: 539616
Number of extensions: 2265983
Number of successful extensions: 5495
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 4303
Number of HSP's gapped (non-prelim): 764
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)