Query 047113
Match_columns 145
No_of_seqs 108 out of 1266
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4.3E-30 9.3E-35 204.6 13.0 144 1-145 376-534 (697)
2 PLN03081 pentatricopeptide (PP 100.0 3.7E-30 7.9E-35 205.0 9.3 138 1-140 275-428 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.5E-28 5.4E-33 198.2 12.4 143 1-145 540-697 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.5E-28 5.3E-33 198.2 11.5 139 1-141 238-392 (857)
5 PLN03218 maturation of RBCL 1; 99.9 1.3E-27 2.8E-32 195.5 10.5 135 2-138 596-754 (1060)
6 PLN03218 maturation of RBCL 1; 99.9 4.4E-27 9.6E-32 192.4 11.8 129 2-132 423-569 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.8 4.6E-18 1E-22 92.0 6.4 50 14-64 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 3.3E-16 7.1E-21 84.7 5.9 50 50-100 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.2 3.3E-11 7.2E-16 59.6 3.7 32 47-78 2-33 (34)
10 KOG4422 Uncharacterized conser 99.2 2.7E-10 5.9E-15 85.0 9.8 113 15-133 241-384 (625)
11 PF12854 PPR_1: PPR repeat 99.2 5.1E-11 1.1E-15 58.9 3.8 31 13-43 4-34 (34)
12 TIGR00756 PPR pentatricopeptid 99.1 2.9E-10 6.2E-15 56.1 4.1 35 17-52 1-35 (35)
13 PRK11788 tetratricopeptide rep 99.0 2.5E-09 5.5E-14 80.0 9.0 77 2-79 124-207 (389)
14 PF13812 PPR_3: Pentatricopept 99.0 1.1E-09 2.3E-14 53.9 4.2 34 16-50 1-34 (34)
15 PRK11788 tetratricopeptide rep 99.0 6.2E-09 1.3E-13 77.9 9.3 128 2-133 197-346 (389)
16 KOG4422 Uncharacterized conser 98.9 1.6E-08 3.5E-13 75.8 10.3 110 8-123 199-330 (625)
17 TIGR02917 PEP_TPR_lipo putativ 98.9 3.8E-08 8.2E-13 79.7 11.3 133 3-140 653-805 (899)
18 PF01535 PPR: PPR repeat; Int 98.8 8.1E-09 1.8E-13 49.5 3.4 31 17-48 1-31 (31)
19 TIGR02917 PEP_TPR_lipo putativ 98.7 1.3E-07 2.8E-12 76.6 10.9 32 105-136 669-700 (899)
20 PF13429 TPR_15: Tetratricopep 98.7 1.1E-07 2.3E-12 68.6 7.7 137 2-141 94-250 (280)
21 TIGR00756 PPR pentatricopeptid 98.7 2.7E-08 5.8E-13 48.8 3.1 35 53-88 1-35 (35)
22 PRK15359 type III secretion sy 98.6 4.3E-07 9.3E-12 59.5 8.9 115 7-143 15-130 (144)
23 PF13812 PPR_3: Pentatricopept 98.6 5.3E-08 1.1E-12 47.7 3.4 33 53-86 2-34 (34)
24 TIGR02521 type_IV_pilW type IV 98.6 3.8E-06 8.2E-11 57.6 12.6 135 2-138 48-202 (234)
25 PF06239 ECSIT: Evolutionarily 98.4 4.3E-06 9.3E-11 57.8 10.0 95 5-101 34-151 (228)
26 PF01535 PPR: PPR repeat; Int 98.4 3E-07 6.6E-12 43.9 3.0 31 53-84 1-31 (31)
27 TIGR00990 3a0801s09 mitochondr 98.4 2E-05 4.3E-10 62.9 14.4 130 3-138 349-500 (615)
28 PF08579 RPM2: Mitochondrial r 98.4 1.2E-05 2.5E-10 50.1 9.9 82 17-100 26-116 (120)
29 TIGR00990 3a0801s09 mitochondr 98.4 5E-06 1.1E-10 66.3 10.3 135 2-142 311-470 (615)
30 KOG1126 DNA-binding cell divis 98.3 2.6E-06 5.6E-11 66.7 7.9 117 15-139 420-557 (638)
31 PRK09782 bacteriophage N4 rece 98.3 9.4E-06 2E-10 67.8 10.7 30 107-136 679-708 (987)
32 KOG1155 Anaphase-promoting com 98.3 6.1E-06 1.3E-10 62.6 8.8 129 1-135 278-462 (559)
33 KOG4318 Bicoid mRNA stability 98.3 1.4E-06 3.1E-11 70.3 5.2 121 13-135 22-234 (1088)
34 TIGR02521 type_IV_pilW type IV 98.3 4.9E-05 1.1E-09 52.0 12.5 130 2-134 82-232 (234)
35 PRK15174 Vi polysaccharide exp 98.2 1.6E-05 3.6E-10 63.9 10.9 24 18-41 146-169 (656)
36 PRK15174 Vi polysaccharide exp 98.2 1.5E-05 3.2E-10 64.2 10.5 112 22-138 218-351 (656)
37 PRK09782 bacteriophage N4 rece 98.2 2.6E-05 5.7E-10 65.2 12.0 135 2-142 526-680 (987)
38 PRK10370 formate-dependent nit 98.2 5.5E-05 1.2E-09 52.2 11.4 104 14-139 71-178 (198)
39 PRK11189 lipoprotein NlpI; Pro 98.2 5.7E-05 1.2E-09 55.1 11.9 117 15-137 97-268 (296)
40 TIGR02552 LcrH_SycD type III s 98.2 6E-05 1.3E-09 48.2 10.5 105 15-140 16-120 (135)
41 PF13429 TPR_15: Tetratricopep 98.2 1E-05 2.2E-10 58.4 7.6 126 3-133 128-276 (280)
42 KOG4626 O-linked N-acetylgluco 98.2 5.2E-06 1.1E-10 65.2 6.2 116 17-138 287-421 (966)
43 KOG4626 O-linked N-acetylgluco 98.2 2.5E-05 5.5E-10 61.5 9.6 138 3-143 304-494 (966)
44 PF12921 ATP13: Mitochondrial 98.1 5.6E-05 1.2E-09 48.4 9.7 83 15-98 1-98 (126)
45 PRK12370 invasion protein regu 98.1 7.1E-05 1.5E-09 59.2 12.2 130 2-137 321-473 (553)
46 KOG4318 Bicoid mRNA stability 98.1 7.3E-06 1.6E-10 66.4 5.6 84 37-123 11-101 (1088)
47 PF10037 MRP-S27: Mitochondria 98.1 3E-05 6.6E-10 59.1 8.4 98 2-101 83-186 (429)
48 cd00189 TPR Tetratricopeptide 98.1 0.00014 3E-09 42.1 9.8 98 18-136 2-99 (100)
49 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.6E-09 55.5 11.2 106 21-133 174-296 (395)
50 PRK11189 lipoprotein NlpI; Pro 97.9 0.00017 3.6E-09 52.7 10.3 111 16-132 64-192 (296)
51 KOG1126 DNA-binding cell divis 97.9 2.8E-05 6.1E-10 61.0 6.0 56 21-79 494-550 (638)
52 KOG0553 TPR repeat-containing 97.9 5.3E-05 1.2E-09 54.6 6.7 96 24-141 89-185 (304)
53 PRK10049 pgaA outer membrane p 97.9 0.00035 7.6E-09 57.3 12.1 138 2-140 254-428 (765)
54 PRK12370 invasion protein regu 97.9 0.00022 4.8E-09 56.4 10.4 134 2-141 278-443 (553)
55 PRK10747 putative protoheme IX 97.8 0.00038 8.1E-09 52.9 10.6 34 105-138 328-361 (398)
56 TIGR00540 hemY_coli hemY prote 97.8 0.0016 3.5E-08 49.7 13.4 134 2-139 135-297 (409)
57 PRK11447 cellulose synthase su 97.8 0.00065 1.4E-08 58.2 12.3 74 2-79 590-664 (1157)
58 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.3E-08 41.0 10.3 107 17-140 3-111 (119)
59 PLN03088 SGT1, suppressor of 97.7 0.00017 3.7E-09 54.0 7.5 95 24-140 10-105 (356)
60 PRK10049 pgaA outer membrane p 97.7 0.00028 6E-09 57.9 8.6 125 2-133 32-178 (765)
61 PRK11447 cellulose synthase su 97.7 0.00068 1.5E-08 58.0 11.0 117 21-140 274-420 (1157)
62 COG4783 Putative Zn-dependent 97.6 0.0024 5.3E-08 49.0 12.4 127 2-133 323-453 (484)
63 KOG1070 rRNA processing protei 97.6 0.0011 2.3E-08 56.6 10.9 126 2-133 1475-1662(1710)
64 PRK14574 hmsH outer membrane p 97.6 0.00058 1.3E-08 56.4 9.4 131 2-141 51-205 (822)
65 PRK15359 type III secretion sy 97.6 0.001 2.2E-08 43.5 8.6 76 2-79 41-119 (144)
66 PRK02603 photosystem I assembl 97.6 0.0017 3.7E-08 43.5 9.8 64 15-79 34-99 (172)
67 KOG3941 Intermediate in Toll s 97.5 0.0027 5.8E-08 46.1 10.6 95 5-101 54-171 (406)
68 PRK10747 putative protoheme IX 97.5 0.0041 8.9E-08 47.3 12.4 131 2-136 135-294 (398)
69 PF08579 RPM2: Mitochondrial r 97.4 0.0018 4E-08 40.5 7.9 63 54-117 27-116 (120)
70 KOG1129 TPR repeat-containing 97.4 0.00055 1.2E-08 50.5 6.5 138 2-142 307-466 (478)
71 PF06239 ECSIT: Evolutionarily 97.4 0.0017 3.7E-08 45.2 8.3 73 48-121 43-154 (228)
72 COG5010 TadD Flp pilus assembl 97.4 0.012 2.5E-07 42.0 12.5 113 15-130 99-227 (257)
73 PF14559 TPR_19: Tetratricopep 97.4 8.9E-05 1.9E-09 41.7 1.6 61 63-142 2-62 (68)
74 PF14559 TPR_19: Tetratricopep 97.4 0.0014 3.1E-08 36.7 6.7 62 27-94 2-64 (68)
75 KOG1840 Kinesin light chain [C 97.4 0.0039 8.4E-08 48.8 10.7 104 17-133 368-478 (508)
76 PF04733 Coatomer_E: Coatomer 97.4 0.002 4.3E-08 47.1 8.6 33 105-137 201-233 (290)
77 PRK14574 hmsH outer membrane p 97.3 0.0058 1.3E-07 50.7 12.0 134 2-139 344-518 (822)
78 PF10037 MRP-S27: Mitochondria 97.3 0.00084 1.8E-08 51.4 6.7 99 16-133 66-166 (429)
79 KOG2002 TPR-containing nuclear 97.3 0.00049 1.1E-08 56.5 5.6 120 2-140 629-751 (1018)
80 PF03704 BTAD: Bacterial trans 97.3 0.0029 6.3E-08 41.1 8.4 73 18-92 64-140 (146)
81 PF12895 Apc3: Anaphase-promot 97.3 0.0017 3.8E-08 38.1 6.6 81 29-130 2-83 (84)
82 COG2956 Predicted N-acetylgluc 97.3 0.0042 9.1E-08 45.8 9.5 78 2-79 52-134 (389)
83 PRK15179 Vi polysaccharide bio 97.3 0.0051 1.1E-07 50.1 11.0 110 2-133 103-216 (694)
84 PF13432 TPR_16: Tetratricopep 97.3 0.00061 1.3E-08 38.0 4.3 61 60-139 5-65 (65)
85 KOG2003 TPR repeat-containing 97.2 0.0071 1.5E-07 46.7 10.4 112 21-137 563-692 (840)
86 CHL00033 ycf3 photosystem I as 97.2 0.0095 2.1E-07 39.7 10.2 107 16-136 35-151 (168)
87 TIGR03302 OM_YfiO outer membra 97.2 0.0082 1.8E-07 42.0 10.2 62 18-79 72-142 (235)
88 TIGR02552 LcrH_SycD type III s 97.2 0.0071 1.5E-07 38.4 8.9 84 2-90 34-120 (135)
89 COG3063 PilF Tfp pilus assembl 97.1 0.01 2.2E-07 41.8 9.7 117 19-141 38-175 (250)
90 COG5010 TadD Flp pilus assembl 97.1 0.0048 1E-07 43.9 8.2 104 15-140 66-169 (257)
91 PRK15363 pathogenicity island 97.1 0.021 4.6E-07 37.9 10.7 94 18-133 37-131 (157)
92 PF13432 TPR_16: Tetratricopep 97.1 0.0031 6.8E-08 35.0 6.0 55 22-79 3-58 (65)
93 PF12895 Apc3: Anaphase-promot 97.1 0.00077 1.7E-08 39.7 3.3 73 2-77 6-83 (84)
94 PRK15179 Vi polysaccharide bio 97.0 0.0076 1.6E-07 49.1 9.7 105 15-141 85-190 (694)
95 PF13414 TPR_11: TPR repeat; P 97.0 0.0073 1.6E-07 33.8 7.1 62 15-79 2-65 (69)
96 COG4235 Cytochrome c biogenesi 97.0 0.019 4.1E-07 41.7 10.4 105 15-138 155-260 (287)
97 cd00189 TPR Tetratricopeptide 97.0 0.011 2.3E-07 33.8 7.7 76 2-79 17-95 (100)
98 KOG1155 Anaphase-promoting com 97.0 0.034 7.4E-07 43.0 11.8 126 2-133 347-494 (559)
99 PLN03088 SGT1, suppressor of 97.0 0.013 2.9E-07 44.0 9.8 88 2-95 19-110 (356)
100 PF13414 TPR_11: TPR repeat; P 96.9 0.0024 5.1E-08 35.9 4.5 67 51-136 2-69 (69)
101 PF04733 Coatomer_E: Coatomer 96.9 0.0053 1.2E-07 44.8 7.1 121 14-139 129-270 (290)
102 TIGR00540 hemY_coli hemY prote 96.9 0.047 1E-06 41.7 12.4 116 15-133 262-398 (409)
103 PRK10153 DNA-binding transcrip 96.8 0.073 1.6E-06 42.1 13.2 126 14-142 335-490 (517)
104 cd05804 StaR_like StaR_like; a 96.8 0.044 9.6E-07 40.6 11.5 97 21-136 119-217 (355)
105 PLN02789 farnesyltranstransfer 96.8 0.033 7E-07 41.4 10.5 121 17-142 38-179 (320)
106 PRK10803 tol-pal system protei 96.7 0.029 6.3E-07 40.5 9.6 104 17-139 144-251 (263)
107 PRK10370 formate-dependent nit 96.7 0.0093 2E-07 41.1 6.6 94 30-144 53-149 (198)
108 KOG3081 Vesicle coat complex C 96.7 0.0091 2E-07 42.9 6.5 108 23-141 115-243 (299)
109 KOG1127 TPR repeat-containing 96.7 0.0084 1.8E-07 50.0 7.1 119 17-138 493-629 (1238)
110 KOG1915 Cell cycle control pro 96.6 0.06 1.3E-06 41.9 11.1 132 2-136 158-353 (677)
111 KOG1840 Kinesin light chain [C 96.6 0.014 3.1E-07 45.7 8.0 105 17-133 200-311 (508)
112 PF13424 TPR_12: Tetratricopep 96.6 0.0081 1.8E-07 34.6 5.2 63 17-79 6-73 (78)
113 PF13428 TPR_14: Tetratricopep 96.5 0.00084 1.8E-08 34.6 0.5 37 107-143 3-39 (44)
114 TIGR03302 OM_YfiO outer membra 96.4 0.18 3.8E-06 35.2 13.1 125 15-139 32-200 (235)
115 PRK15363 pathogenicity island 96.4 0.031 6.7E-07 37.1 7.5 84 1-86 51-137 (157)
116 KOG0547 Translocase of outer m 96.4 0.069 1.5E-06 41.6 10.2 125 2-131 411-563 (606)
117 PF09976 TPR_21: Tetratricopep 96.4 0.13 2.9E-06 33.3 12.1 24 107-130 120-143 (145)
118 COG3071 HemY Uncharacterized e 96.3 0.19 4.2E-06 38.0 12.0 112 15-133 262-389 (400)
119 KOG2076 RNA polymerase III tra 96.3 0.08 1.7E-06 43.7 10.5 113 2-136 156-272 (895)
120 PF05843 Suf: Suppressor of fo 96.3 0.073 1.6E-06 38.7 9.6 30 107-136 109-138 (280)
121 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.038 8.3E-07 42.6 8.1 62 15-79 74-139 (453)
122 COG4783 Putative Zn-dependent 96.2 0.12 2.6E-06 40.1 10.6 101 25-131 315-434 (484)
123 KOG1129 TPR repeat-containing 96.2 0.009 1.9E-07 44.3 4.5 127 3-133 241-386 (478)
124 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.053 1.2E-06 33.2 7.5 78 2-79 19-103 (119)
125 PF13371 TPR_9: Tetratricopept 96.2 0.0099 2.1E-07 33.6 3.8 62 60-140 3-64 (73)
126 PF12569 NARP1: NMDA receptor- 96.2 0.086 1.9E-06 41.7 9.9 139 2-143 21-232 (517)
127 PF13371 TPR_9: Tetratricopept 96.1 0.048 1.1E-06 30.7 6.6 54 23-79 2-56 (73)
128 PF05843 Suf: Suppressor of fo 96.1 0.067 1.4E-06 38.9 8.7 98 17-134 2-99 (280)
129 KOG1173 Anaphase-promoting com 96.1 0.018 3.9E-07 45.3 5.7 38 102-139 486-523 (611)
130 cd05804 StaR_like StaR_like; a 96.0 0.13 2.7E-06 38.1 9.7 111 21-137 48-180 (355)
131 KOG1128 Uncharacterized conser 95.9 0.089 1.9E-06 42.7 9.0 117 16-135 424-583 (777)
132 KOG1173 Anaphase-promoting com 95.9 0.076 1.7E-06 41.9 8.3 79 17-101 456-535 (611)
133 KOG3081 Vesicle coat complex C 95.8 0.047 1E-06 39.3 6.4 78 2-81 154-236 (299)
134 PF09295 ChAPs: ChAPs (Chs5p-A 95.8 0.056 1.2E-06 41.3 7.3 86 53-143 170-272 (395)
135 KOG3616 Selective LIM binding 95.8 0.099 2.1E-06 43.0 8.7 67 3-79 750-818 (1636)
136 KOG1125 TPR repeat-containing 95.7 0.048 1E-06 42.9 6.6 98 14-133 428-526 (579)
137 PF02284 COX5A: Cytochrome c o 95.7 0.11 2.3E-06 32.0 6.8 75 19-96 11-87 (108)
138 cd00923 Cyt_c_Oxidase_Va Cytoc 95.7 0.09 1.9E-06 32.0 6.3 63 31-96 22-84 (103)
139 KOG2076 RNA polymerase III tra 95.6 0.24 5.1E-06 41.1 10.4 97 19-135 417-513 (895)
140 KOG4570 Uncharacterized conser 95.6 0.087 1.9E-06 39.0 7.3 60 15-79 103-162 (418)
141 KOG2003 TPR repeat-containing 95.6 0.29 6.3E-06 38.2 10.3 102 14-120 590-709 (840)
142 KOG0547 Translocase of outer m 95.6 0.13 2.8E-06 40.2 8.5 114 19-138 363-495 (606)
143 COG2956 Predicted N-acetylgluc 95.5 0.4 8.6E-06 35.7 10.3 132 2-135 124-279 (389)
144 KOG3060 Uncharacterized conser 95.5 0.36 7.9E-06 34.7 9.8 119 19-141 55-190 (289)
145 PF13176 TPR_7: Tetratricopept 95.5 0.035 7.6E-07 27.1 3.6 25 18-42 1-25 (36)
146 PF13281 DUF4071: Domain of un 95.4 0.59 1.3E-05 35.5 11.3 36 102-137 302-337 (374)
147 PRK14720 transcript cleavage f 95.4 0.17 3.7E-06 42.5 9.1 119 14-141 29-152 (906)
148 PRK10153 DNA-binding transcrip 95.3 0.17 3.7E-06 40.1 8.7 70 15-90 419-488 (517)
149 PF13424 TPR_12: Tetratricopep 95.3 0.098 2.1E-06 29.9 5.8 68 52-132 5-73 (78)
150 KOG1915 Cell cycle control pro 95.3 0.52 1.1E-05 37.0 10.8 122 3-131 91-233 (677)
151 KOG3941 Intermediate in Toll s 95.3 0.14 3E-06 37.5 7.3 74 47-121 62-174 (406)
152 PF12921 ATP13: Mitochondrial 95.2 0.13 2.8E-06 32.9 6.5 54 14-67 50-103 (126)
153 PF12688 TPR_5: Tetratrico pep 95.2 0.43 9.4E-06 30.2 10.6 57 23-80 8-66 (120)
154 COG3071 HemY Uncharacterized e 95.2 0.69 1.5E-05 35.1 11.0 127 10-138 181-361 (400)
155 KOG2047 mRNA splicing factor [ 95.1 0.47 1E-05 38.5 10.4 114 15-133 137-276 (835)
156 KOG0985 Vesicle coat protein c 95.0 0.72 1.6E-05 39.5 11.5 106 16-131 1104-1220(1666)
157 PF09976 TPR_21: Tetratricopep 95.0 0.084 1.8E-06 34.2 5.3 77 21-101 53-131 (145)
158 PRK14720 transcript cleavage f 94.9 0.26 5.7E-06 41.4 8.8 118 17-140 117-258 (906)
159 COG3629 DnrI DNA-binding trans 94.7 0.69 1.5E-05 33.7 9.6 83 16-101 153-240 (280)
160 COG3898 Uncharacterized membra 94.6 1.1 2.4E-05 34.4 10.7 132 2-136 137-294 (531)
161 COG3063 PilF Tfp pilus assembl 94.5 1.2 2.5E-05 31.7 11.5 128 3-133 53-201 (250)
162 PRK02603 photosystem I assembl 94.5 0.54 1.2E-05 31.3 8.4 63 2-67 52-121 (172)
163 KOG1174 Anaphase-promoting com 94.5 0.32 7E-06 37.4 7.7 35 102-136 365-399 (564)
164 PLN02789 farnesyltranstransfer 94.4 1.2 2.5E-05 33.2 10.5 119 15-137 105-253 (320)
165 KOG0495 HAT repeat protein [RN 94.4 1 2.2E-05 36.8 10.6 124 15-142 718-854 (913)
166 KOG2002 TPR-containing nuclear 94.4 0.22 4.7E-06 41.8 7.1 131 1-136 662-800 (1018)
167 PF03704 BTAD: Bacterial trans 94.2 0.15 3.3E-06 32.9 5.1 99 16-133 3-124 (146)
168 KOG3785 Uncharacterized conser 94.1 0.69 1.5E-05 35.1 8.7 117 20-141 363-496 (557)
169 KOG1128 Uncharacterized conser 94.0 0.2 4.2E-06 40.8 6.0 95 17-133 520-615 (777)
170 PF14938 SNAP: Soluble NSF att 93.9 0.53 1.2E-05 34.1 8.0 76 3-79 99-182 (282)
171 PF00515 TPR_1: Tetratricopept 93.9 0.033 7.1E-07 26.5 1.2 32 106-137 2-33 (34)
172 PF07719 TPR_2: Tetratricopept 93.8 0.056 1.2E-06 25.5 1.8 33 106-138 2-34 (34)
173 KOG0548 Molecular co-chaperone 93.6 0.25 5.3E-06 38.8 5.9 96 24-141 10-106 (539)
174 KOG2053 Mitochondrial inherita 93.6 1 2.2E-05 37.7 9.4 79 18-101 43-123 (932)
175 KOG2047 mRNA splicing factor [ 93.6 1.5 3.3E-05 35.7 10.2 115 18-135 250-417 (835)
176 KOG1125 TPR repeat-containing 93.6 0.54 1.2E-05 37.3 7.6 88 31-137 409-496 (579)
177 CHL00033 ycf3 photosystem I as 93.5 0.54 1.2E-05 31.1 6.9 73 2-77 52-138 (168)
178 PRK15331 chaperone protein Sic 93.5 1.3 2.8E-05 29.8 8.4 54 24-79 45-98 (165)
179 KOG0553 TPR repeat-containing 93.4 1.5 3.2E-05 32.3 9.2 93 3-101 99-195 (304)
180 KOG2796 Uncharacterized conser 93.4 0.84 1.8E-05 33.3 7.8 119 18-138 179-319 (366)
181 PF12569 NARP1: NMDA receptor- 93.1 2.9 6.2E-05 33.3 11.1 96 18-135 196-292 (517)
182 PF13428 TPR_14: Tetratricopep 93.1 0.28 6.1E-06 24.9 3.9 27 18-44 3-29 (44)
183 PF13176 TPR_7: Tetratricopept 92.9 0.15 3.2E-06 24.8 2.6 27 107-133 1-27 (36)
184 PF00515 TPR_1: Tetratricopept 92.9 0.31 6.7E-06 23.0 3.7 28 17-44 2-29 (34)
185 PF04840 Vps16_C: Vps16, C-ter 92.8 1 2.2E-05 33.6 7.9 103 18-133 179-290 (319)
186 PF13512 TPR_18: Tetratricopep 92.8 0.66 1.4E-05 30.3 6.1 119 18-138 13-132 (142)
187 PF13374 TPR_10: Tetratricopep 92.7 0.35 7.7E-06 23.6 4.0 27 17-43 3-29 (42)
188 KOG4340 Uncharacterized conser 92.7 2.7 5.9E-05 31.3 9.7 77 5-84 132-209 (459)
189 PF04840 Vps16_C: Vps16, C-ter 92.7 1.8 3.8E-05 32.3 9.1 108 3-132 195-302 (319)
190 PF14938 SNAP: Soluble NSF att 92.6 2.9 6.3E-05 30.3 10.6 97 3-100 140-247 (282)
191 PRK10803 tol-pal system protei 92.4 1.2 2.7E-05 32.1 7.8 79 2-80 160-245 (263)
192 TIGR02561 HrpB1_HrpK type III 92.4 2.1 4.6E-05 28.3 10.1 95 27-133 21-121 (153)
193 KOG1914 mRNA cleavage and poly 92.1 2.7 5.9E-05 33.6 9.6 77 15-97 19-95 (656)
194 PF13431 TPR_17: Tetratricopep 92.0 0.18 3.8E-06 24.3 2.1 24 13-36 10-33 (34)
195 PF04184 ST7: ST7 protein; In 92.0 2.4 5.2E-05 33.5 9.1 71 22-93 265-336 (539)
196 KOG4162 Predicted calmodulin-b 91.9 4.6 9.9E-05 33.5 10.9 116 18-139 652-788 (799)
197 KOG1174 Anaphase-promoting com 91.7 2.2 4.7E-05 33.1 8.5 37 102-138 468-504 (564)
198 PF13170 DUF4003: Protein of u 91.5 0.86 1.9E-05 33.6 6.2 90 2-95 120-224 (297)
199 smart00299 CLH Clathrin heavy 91.5 2 4.3E-05 27.5 7.3 51 15-67 6-56 (140)
200 PLN03098 LPA1 LOW PSII ACCUMUL 91.2 0.91 2E-05 35.3 6.2 69 49-134 71-141 (453)
201 PF10602 RPN7: 26S proteasome 91.1 3.5 7.5E-05 27.9 10.7 62 17-79 37-100 (177)
202 KOG0495 HAT repeat protein [RN 91.0 7.5 0.00016 32.1 11.1 60 17-79 619-678 (913)
203 PF13181 TPR_8: Tetratricopept 90.9 0.13 2.9E-06 24.2 1.1 32 106-137 2-33 (34)
204 PF13525 YfiO: Outer membrane 90.8 3.9 8.5E-05 28.1 9.8 65 22-86 11-76 (203)
205 COG1729 Uncharacterized protei 90.7 3.9 8.4E-05 29.6 8.6 103 18-139 144-249 (262)
206 KOG0543 FKBP-type peptidyl-pro 90.1 2.1 4.5E-05 32.8 7.1 26 54-79 259-284 (397)
207 KOG1156 N-terminal acetyltrans 90.0 2.6 5.7E-05 34.2 7.9 89 54-142 145-256 (700)
208 PF13762 MNE1: Mitochondrial s 89.7 4.2 9E-05 26.7 8.7 83 18-101 41-128 (145)
209 KOG0985 Vesicle coat protein c 89.6 1.9 4.2E-05 37.1 7.2 109 19-132 609-751 (1666)
210 PF04053 Coatomer_WDAD: Coatom 89.6 4.9 0.00011 31.4 9.1 55 15-79 346-400 (443)
211 KOG3616 Selective LIM binding 89.6 1.6 3.4E-05 36.4 6.5 95 23-130 739-849 (1636)
212 PF07079 DUF1347: Protein of u 89.4 0.94 2E-05 35.3 4.9 74 27-101 90-180 (549)
213 PF00637 Clathrin: Region in C 89.1 0.6 1.3E-05 30.0 3.4 94 21-127 12-105 (143)
214 PF13512 TPR_18: Tetratricopep 88.9 1.2 2.6E-05 29.1 4.6 72 52-140 11-82 (142)
215 KOG0548 Molecular co-chaperone 88.6 3.5 7.6E-05 32.7 7.6 55 23-79 365-419 (539)
216 PF07721 TPR_4: Tetratricopept 88.1 1.1 2.4E-05 19.9 3.0 22 19-40 4-25 (26)
217 KOG1127 TPR repeat-containing 87.9 6.8 0.00015 33.7 9.1 124 3-132 510-657 (1238)
218 COG5107 RNA14 Pre-mRNA 3'-end 87.7 12 0.00026 29.6 10.3 90 7-101 31-122 (660)
219 PRK10564 maltose regulon perip 87.7 1.5 3.3E-05 32.2 4.9 40 19-59 260-299 (303)
220 COG3898 Uncharacterized membra 87.5 12 0.00025 29.1 9.5 37 16-52 188-224 (531)
221 PF13374 TPR_10: Tetratricopep 87.5 1.6 3.4E-05 21.2 3.7 28 52-79 2-29 (42)
222 smart00028 TPR Tetratricopepti 87.5 0.78 1.7E-05 20.0 2.4 31 107-137 3-33 (34)
223 PF13929 mRNA_stabil: mRNA sta 87.5 9.5 0.00021 28.1 8.8 103 28-130 140-263 (292)
224 COG3629 DnrI DNA-binding trans 87.4 3.7 8E-05 30.0 6.7 51 14-64 185-239 (280)
225 KOG4077 Cytochrome c oxidase, 87.3 5.3 0.00011 25.8 6.6 60 34-96 67-126 (149)
226 KOG2053 Mitochondrial inherita 87.2 17 0.00038 30.8 11.2 95 2-101 60-157 (932)
227 PF14853 Fis1_TPR_C: Fis1 C-te 86.9 0.25 5.4E-06 26.6 0.4 30 111-140 7-36 (53)
228 COG4700 Uncharacterized protei 86.8 8.5 0.00018 26.8 9.4 63 19-83 92-154 (251)
229 TIGR02561 HrpB1_HrpK type III 86.6 4.1 9E-05 26.9 6.0 57 2-64 27-88 (153)
230 PF09613 HrpB1_HrpK: Bacterial 86.4 6.3 0.00014 26.3 6.9 51 24-79 18-71 (160)
231 PF13170 DUF4003: Protein of u 86.3 3.7 8E-05 30.3 6.4 70 15-85 59-136 (297)
232 PRK15331 chaperone protein Sic 86.3 3.9 8.4E-05 27.5 5.9 77 1-79 53-132 (165)
233 PRK10866 outer membrane biogen 86.3 9.9 0.00021 27.1 11.1 20 60-79 77-96 (243)
234 PF02284 COX5A: Cytochrome c o 85.8 5.2 0.00011 24.7 5.8 44 14-59 43-86 (108)
235 PF09613 HrpB1_HrpK: Bacterial 85.8 8.4 0.00018 25.8 9.9 41 2-44 27-72 (160)
236 PF07035 Mic1: Colon cancer-as 85.2 9.3 0.0002 25.7 9.7 87 39-131 17-115 (167)
237 KOG3785 Uncharacterized conser 84.3 5 0.00011 30.7 6.2 73 3-79 411-488 (557)
238 KOG1070 rRNA processing protei 84.3 4.7 0.0001 35.9 6.7 74 4-79 1516-1591(1710)
239 KOG4648 Uncharacterized conser 84.2 3.2 6.9E-05 31.6 5.1 92 24-137 105-197 (536)
240 PF11848 DUF3368: Domain of un 83.8 4.1 9E-05 21.2 4.2 32 27-59 13-44 (48)
241 COG4105 ComL DNA uptake lipopr 83.4 15 0.00032 26.6 11.8 54 28-81 46-100 (254)
242 PF13174 TPR_6: Tetratricopept 83.4 0.5 1.1E-05 21.8 0.5 27 111-137 6-32 (33)
243 PF11848 DUF3368: Domain of un 83.3 4.8 0.0001 21.0 5.0 38 59-97 9-46 (48)
244 PF00637 Clathrin: Region in C 83.2 0.62 1.3E-05 29.9 1.1 97 15-121 41-141 (143)
245 PF11846 DUF3366: Domain of un 83.1 8.1 0.00018 26.3 6.6 55 25-79 117-171 (193)
246 KOG2376 Signal recognition par 82.8 24 0.00052 28.7 10.8 114 16-133 376-519 (652)
247 PF11207 DUF2989: Protein of u 82.8 12 0.00026 26.1 7.2 65 34-100 124-190 (203)
248 PF09205 DUF1955: Domain of un 82.8 11 0.00024 24.7 7.7 67 16-85 86-152 (161)
249 PRK10866 outer membrane biogen 82.7 4.5 9.7E-05 28.8 5.4 68 54-139 35-103 (243)
250 PF13762 MNE1: Mitochondrial s 82.3 5.2 0.00011 26.3 5.1 56 14-70 77-133 (145)
251 KOG2376 Signal recognition par 80.9 13 0.00028 30.2 7.6 106 21-135 17-140 (652)
252 KOG3617 WD40 and TPR repeat-co 80.6 11 0.00024 32.2 7.3 106 22-132 832-939 (1416)
253 PF10300 DUF3808: Protein of u 79.5 15 0.00032 29.0 7.7 79 2-80 250-333 (468)
254 PRK10564 maltose regulon perip 79.4 6 0.00013 29.2 5.1 48 47-95 251-299 (303)
255 KOG0543 FKBP-type peptidyl-pro 79.4 18 0.00038 27.9 7.7 70 16-90 257-326 (397)
256 cd00280 TRFH Telomeric Repeat 78.9 19 0.0004 24.9 7.0 66 32-101 85-156 (200)
257 cd00923 Cyt_c_Oxidase_Va Cytoc 78.6 12 0.00026 23.0 5.4 44 14-59 40-83 (103)
258 COG5107 RNA14 Pre-mRNA 3'-end 77.0 17 0.00037 28.8 7.1 47 54-101 399-446 (660)
259 PF10366 Vps39_1: Vacuolar sor 76.7 4.1 8.9E-05 25.3 3.2 27 18-44 41-67 (108)
260 KOG4555 TPR repeat-containing 76.3 19 0.00041 23.6 7.9 92 24-133 51-143 (175)
261 PF07443 HARP: HepA-related pr 75.9 1.1 2.4E-05 24.3 0.4 34 30-64 6-39 (55)
262 KOG2610 Uncharacterized conser 74.7 36 0.00078 26.1 8.2 49 29-79 116-164 (491)
263 COG1729 Uncharacterized protei 74.4 24 0.00053 25.6 7.0 81 3-83 159-246 (262)
264 PF11846 DUF3366: Domain of un 74.2 7.2 0.00016 26.5 4.2 32 13-44 141-172 (193)
265 TIGR03504 FimV_Cterm FimV C-te 74.2 8.1 0.00018 19.8 3.4 23 22-44 5-27 (44)
266 PF11663 Toxin_YhaV: Toxin wit 74.0 4.3 9.4E-05 26.3 2.8 32 28-62 107-138 (140)
267 COG5108 RPO41 Mitochondrial DN 73.3 27 0.00059 29.2 7.6 80 21-100 33-115 (1117)
268 KOG3617 WD40 and TPR repeat-co 73.2 38 0.00081 29.2 8.4 115 15-131 756-884 (1416)
269 COG4235 Cytochrome c biogenesi 73.0 35 0.00076 25.2 9.1 74 3-79 174-254 (287)
270 PF13525 YfiO: Outer membrane 73.0 12 0.00025 25.7 5.1 63 61-139 14-76 (203)
271 KOG1914 mRNA cleavage and poly 72.9 50 0.0011 26.9 11.3 116 16-133 366-500 (656)
272 PF04124 Dor1: Dor1-like famil 70.6 16 0.00034 27.4 5.6 38 21-58 111-148 (338)
273 PF14689 SPOB_a: Sensor_kinase 70.5 12 0.00026 20.6 3.8 45 32-79 6-50 (62)
274 PF12688 TPR_5: Tetratrico pep 69.6 25 0.00055 22.2 8.1 90 2-99 18-117 (120)
275 TIGR02508 type_III_yscG type I 69.5 21 0.00047 22.1 4.9 60 24-92 47-106 (115)
276 PF10579 Rapsyn_N: Rapsyn N-te 69.5 7.9 0.00017 22.7 3.0 25 106-130 44-68 (80)
277 KOG2041 WD40 repeat protein [G 69.4 43 0.00092 28.3 7.9 70 1-77 750-821 (1189)
278 PF06552 TOM20_plant: Plant sp 69.1 20 0.00042 24.6 5.2 69 2-79 52-134 (186)
279 PF13929 mRNA_stabil: mRNA sta 68.9 44 0.00096 24.7 8.9 100 2-101 145-251 (292)
280 COG4455 ImpE Protein of avirul 68.4 41 0.00089 24.1 8.1 79 18-99 3-83 (273)
281 KOG0276 Vesicle coat complex C 68.3 54 0.0012 27.1 8.2 22 110-131 726-747 (794)
282 PF07079 DUF1347: Protein of u 68.1 60 0.0013 25.9 8.3 123 1-133 22-156 (549)
283 PF06957 COPI_C: Coatomer (COP 68.1 27 0.00059 27.2 6.4 100 26-137 214-332 (422)
284 KOG2280 Vacuolar assembly/sort 67.3 35 0.00077 28.6 7.1 50 47-101 679-728 (829)
285 PRK04841 transcriptional regul 66.7 79 0.0017 26.8 10.5 116 18-133 493-640 (903)
286 KOG4570 Uncharacterized conser 66.0 32 0.00069 26.0 6.1 86 46-131 58-161 (418)
287 COG4105 ComL DNA uptake lipopr 65.3 21 0.00046 25.8 5.0 71 52-139 35-105 (254)
288 cd00280 TRFH Telomeric Repeat 64.8 6.5 0.00014 27.1 2.3 28 109-137 115-142 (200)
289 cd08326 CARD_CASP9 Caspase act 64.7 9.4 0.0002 22.5 2.7 60 7-71 21-80 (84)
290 PF02847 MA3: MA3 domain; Int 63.8 31 0.00066 21.0 9.3 64 20-87 6-71 (113)
291 PF10579 Rapsyn_N: Rapsyn N-te 63.8 28 0.0006 20.4 4.8 46 28-74 18-65 (80)
292 KOG0624 dsRNA-activated protei 62.7 40 0.00086 25.9 6.2 52 22-76 161-213 (504)
293 KOG2396 HAT (Half-A-TPR) repea 62.6 62 0.0014 26.0 7.4 89 34-142 89-177 (568)
294 cd08332 CARD_CASP2 Caspase act 62.4 11 0.00024 22.5 2.8 58 7-69 25-82 (90)
295 PF11817 Foie-gras_1: Foie gra 61.9 45 0.00097 23.8 6.3 21 59-79 185-205 (247)
296 PF02607 B12-binding_2: B12 bi 61.8 26 0.00057 19.8 4.3 40 27-67 12-51 (79)
297 PF11207 DUF2989: Protein of u 61.6 53 0.0011 23.0 6.5 61 63-125 118-198 (203)
298 cd08819 CARD_MDA5_2 Caspase ac 61.5 28 0.00061 20.8 4.3 14 29-42 49-62 (88)
299 PF02184 HAT: HAT (Half-A-TPR) 61.0 18 0.00038 17.3 2.8 25 67-94 2-26 (32)
300 PF08311 Mad3_BUB1_I: Mad3/BUB 60.4 41 0.00089 21.3 7.6 43 34-77 81-124 (126)
301 PF04910 Tcf25: Transcriptiona 59.7 47 0.001 25.2 6.4 108 26-139 20-138 (360)
302 KOG4162 Predicted calmodulin-b 58.9 1.1E+02 0.0024 25.9 9.8 65 15-79 356-421 (799)
303 KOG4340 Uncharacterized conser 58.8 77 0.0017 24.0 7.6 68 29-101 125-192 (459)
304 KOG4334 Uncharacterized conser 58.6 6.8 0.00015 31.0 1.7 75 19-101 493-573 (650)
305 smart00299 CLH Clathrin heavy 58.0 45 0.00098 21.0 11.0 57 15-79 40-96 (140)
306 KOG3364 Membrane protein invol 57.8 26 0.00056 23.0 4.0 62 63-141 46-107 (149)
307 smart00638 LPD_N Lipoprotein N 57.5 1E+02 0.0022 24.9 9.3 83 16-100 340-430 (574)
308 PF02259 FAT: FAT domain; Int 56.6 76 0.0017 23.2 9.7 117 16-135 31-176 (352)
309 PF10475 DUF2450: Protein of u 56.1 78 0.0017 23.2 7.3 24 102-125 194-217 (291)
310 smart00804 TAP_C C-terminal do 55.4 15 0.00032 20.5 2.3 23 30-52 39-61 (63)
311 KOG4555 TPR repeat-containing 55.2 58 0.0013 21.5 7.3 82 1-83 59-145 (175)
312 COG4785 NlpI Lipoprotein NlpI, 54.5 79 0.0017 22.8 8.6 30 15-44 98-127 (297)
313 PF07163 Pex26: Pex26 protein; 54.3 88 0.0019 23.2 9.9 93 21-128 88-181 (309)
314 PRK10941 hypothetical protein; 54.1 84 0.0018 22.9 9.3 77 18-97 183-260 (269)
315 PF10300 DUF3808: Protein of u 53.9 57 0.0012 25.8 6.1 77 1-79 283-374 (468)
316 COG3118 Thioredoxin domain-con 53.5 92 0.002 23.2 10.0 106 25-133 143-264 (304)
317 KOG2280 Vacuolar assembly/sort 53.5 1.4E+02 0.003 25.4 8.8 100 18-129 686-794 (829)
318 PF10366 Vps39_1: Vacuolar sor 53.3 13 0.00029 23.0 2.1 30 104-133 38-67 (108)
319 smart00386 HAT HAT (Half-A-TPR 52.9 21 0.00045 15.7 3.2 28 66-95 1-28 (33)
320 PRK11906 transcriptional regul 52.8 1.2E+02 0.0025 24.2 9.8 85 14-101 336-421 (458)
321 TIGR03581 EF_0839 conserved hy 52.6 46 0.001 23.6 4.8 90 31-132 136-235 (236)
322 PF07064 RIC1: RIC1; InterPro 51.5 91 0.002 22.6 7.2 36 104-139 219-254 (258)
323 PF07064 RIC1: RIC1; InterPro 50.9 93 0.002 22.5 7.0 59 21-79 184-247 (258)
324 KOG0991 Replication factor C, 50.7 97 0.0021 22.7 7.6 59 4-65 227-285 (333)
325 cd08329 CARD_BIRC2_BIRC3 Caspa 50.5 21 0.00046 21.5 2.7 54 6-64 27-80 (94)
326 PF04053 Coatomer_WDAD: Coatom 50.0 60 0.0013 25.5 5.7 104 27-133 272-375 (443)
327 cd07153 Fur_like Ferric uptake 49.9 56 0.0012 19.9 4.7 47 22-69 6-52 (116)
328 PHA02884 ankyrin repeat protei 49.3 66 0.0014 23.9 5.6 61 10-75 24-90 (300)
329 PF04090 RNA_pol_I_TF: RNA pol 49.2 88 0.0019 21.8 6.1 117 15-133 40-167 (199)
330 PF10602 RPN7: 26S proteasome 48.7 47 0.001 22.4 4.4 40 46-86 29-69 (177)
331 KOG1538 Uncharacterized conser 48.5 1.4E+02 0.0029 25.3 7.4 96 18-133 749-845 (1081)
332 PRK11906 transcriptional regul 48.1 1.4E+02 0.003 23.7 10.4 52 31-87 319-370 (458)
333 smart00544 MA3 Domain in DAP-5 47.6 63 0.0014 19.6 10.4 61 20-84 6-68 (113)
334 PRK04841 transcriptional regul 46.2 1.9E+02 0.004 24.6 10.7 109 24-133 460-601 (903)
335 KOG4567 GTPase-activating prot 45.1 1E+02 0.0022 23.3 5.8 59 36-101 263-321 (370)
336 KOG0624 dsRNA-activated protei 44.8 1.5E+02 0.0032 23.0 9.7 110 25-138 115-256 (504)
337 PF07240 Turandot: Stress-indu 44.7 67 0.0014 19.1 4.9 19 26-44 6-24 (85)
338 PF04124 Dor1: Dor1-like famil 44.7 39 0.00084 25.4 3.8 24 56-79 110-133 (338)
339 cd01671 CARD Caspase activatio 44.1 26 0.00056 19.8 2.3 57 5-66 16-72 (80)
340 KOG4648 Uncharacterized conser 43.2 21 0.00047 27.3 2.2 32 112-143 104-135 (536)
341 PF08564 CDC37_C: Cdc37 C term 43.1 32 0.00068 21.1 2.6 11 3-13 16-26 (99)
342 KOG0292 Vesicle coat complex C 42.7 2.1E+02 0.0046 25.1 7.8 36 104-139 1083-1118(1202)
343 COG2405 Predicted nucleic acid 42.7 51 0.0011 21.7 3.6 39 58-97 115-153 (157)
344 COG2909 MalT ATP-dependent tra 42.6 2.3E+02 0.0049 24.6 8.9 119 14-133 495-646 (894)
345 PF12816 Vps8: Golgi CORVET co 42.4 54 0.0012 22.6 4.0 79 10-95 16-94 (196)
346 KOG1156 N-terminal acetyltrans 42.2 2E+02 0.0044 24.0 7.8 38 102-139 366-405 (700)
347 PF10345 Cohesin_load: Cohesin 41.5 1.9E+02 0.0042 23.6 7.6 49 28-76 373-428 (608)
348 KOG0550 Molecular chaperone (D 41.4 1.4E+02 0.003 23.6 6.2 16 64-79 261-276 (486)
349 PF14669 Asp_Glu_race_2: Putat 41.1 81 0.0018 22.2 4.5 56 21-77 137-206 (233)
350 PF12862 Apc5: Anaphase-promot 40.9 77 0.0017 18.7 7.2 55 25-80 7-69 (94)
351 KOG0403 Neoplastic transformat 40.9 1.9E+02 0.0041 23.2 9.2 94 20-120 513-617 (645)
352 PRK10941 hypothetical protein; 39.7 22 0.00047 25.9 1.8 34 106-139 182-215 (269)
353 PF07575 Nucleopor_Nup85: Nup8 39.6 69 0.0015 25.9 4.7 89 7-99 396-484 (566)
354 COG0735 Fur Fe2+/Zn2+ uptake r 39.5 1.1E+02 0.0023 20.0 6.2 60 39-101 9-68 (145)
355 KOG1130 Predicted G-alpha GTPa 39.0 65 0.0014 25.5 4.2 20 63-83 28-47 (639)
356 KOG4414 COP9 signalosome, subu 38.8 80 0.0017 21.0 4.1 32 102-133 36-67 (197)
357 PF07304 SRA1: Steroid recepto 38.7 66 0.0014 21.4 3.8 41 38-79 77-117 (157)
358 COG4785 NlpI Lipoprotein NlpI, 38.6 62 0.0013 23.3 3.8 37 102-138 95-132 (297)
359 PF05476 PET122: PET122; Inte 38.5 1.2E+02 0.0027 22.1 5.3 57 24-83 18-74 (267)
360 PF12968 DUF3856: Domain of Un 38.4 86 0.0019 20.2 4.1 23 15-37 54-76 (144)
361 KOG3060 Uncharacterized conser 38.4 1.6E+02 0.0035 21.7 8.2 30 50-79 152-181 (289)
362 PF14840 DNA_pol3_delt_C: Proc 38.2 40 0.00086 21.4 2.6 29 28-57 9-37 (125)
363 cd08330 CARD_ASC_NALP1 Caspase 38.0 40 0.00087 19.7 2.5 53 5-62 18-70 (82)
364 TIGR02531 yecD_yerC TrpR-relat 37.9 74 0.0016 18.9 3.6 27 17-43 3-29 (88)
365 KOG1130 Predicted G-alpha GTPa 37.5 44 0.00096 26.3 3.1 116 17-133 196-343 (639)
366 PF01475 FUR: Ferric uptake re 37.1 79 0.0017 19.5 3.9 46 21-67 12-57 (120)
367 PF04184 ST7: ST7 protein; In 36.5 1.2E+02 0.0027 24.4 5.4 59 2-61 276-340 (539)
368 KOG2796 Uncharacterized conser 36.3 1.8E+02 0.0039 21.7 8.7 86 15-101 211-301 (366)
369 PF14669 Asp_Glu_race_2: Putat 36.2 1.5E+02 0.0033 20.8 7.7 71 56-133 136-209 (233)
370 COG3947 Response regulator con 36.0 1E+02 0.0022 23.2 4.6 26 54-79 281-306 (361)
371 PRK11639 zinc uptake transcrip 35.4 1.4E+02 0.0029 20.0 5.0 54 46-101 20-73 (169)
372 PRK15180 Vi polysaccharide bio 35.4 1.7E+02 0.0036 23.9 5.9 23 117-139 403-425 (831)
373 PF07720 TPR_3: Tetratricopept 34.9 59 0.0013 15.7 3.3 20 21-40 6-25 (36)
374 PF05373 Pro_3_hydrox_C: L-pro 34.9 1.1E+02 0.0024 18.8 4.9 46 76-122 31-81 (101)
375 PF01347 Vitellogenin_N: Lipop 34.8 2.5E+02 0.0054 22.8 10.7 34 15-49 377-410 (618)
376 cd08323 CARD_APAF1 Caspase act 34.7 67 0.0014 19.0 3.0 61 7-72 19-79 (86)
377 PF11768 DUF3312: Protein of u 34.1 2.6E+02 0.0056 22.8 8.5 109 18-131 410-520 (545)
378 KOG0591 NIMA (never in mitosis 34.0 1.8E+02 0.0039 21.9 5.7 56 5-63 69-135 (375)
379 KOG0550 Molecular chaperone (D 32.6 1.7E+02 0.0037 23.1 5.6 61 19-79 252-314 (486)
380 COG5210 GTPase-activating prot 32.4 1.8E+02 0.004 23.1 6.0 65 35-101 361-425 (496)
381 PF10440 WIYLD: Ubiquitin-bind 32.0 99 0.0022 17.4 4.5 28 34-62 10-39 (65)
382 PF09797 NatB_MDM20: N-acetylt 31.6 82 0.0018 23.8 3.9 35 21-56 222-256 (365)
383 COG1747 Uncharacterized N-term 31.4 3E+02 0.0064 22.7 8.9 48 51-101 65-112 (711)
384 COG2405 Predicted nucleic acid 31.0 1.4E+02 0.0031 19.7 4.3 42 18-61 112-153 (157)
385 COG1775 HgdB Benzoyl-CoA reduc 30.9 2.3E+02 0.005 21.9 5.9 73 3-79 147-222 (379)
386 smart00777 Mad3_BUB1_I Mad3/BU 30.0 1.5E+02 0.0033 18.9 4.7 43 33-76 80-123 (125)
387 PF00619 CARD: Caspase recruit 29.9 42 0.00092 19.2 1.7 64 4-73 18-81 (85)
388 PF09454 Vps23_core: Vps23 cor 29.4 1.1E+02 0.0024 17.0 4.9 48 14-63 6-53 (65)
389 KOG1920 IkappaB kinase complex 29.1 3.7E+02 0.0079 24.4 7.3 107 14-132 933-1053(1265)
390 cd02679 MIT_spastin MIT: domai 28.0 1.1E+02 0.0024 17.9 3.1 44 29-80 21-67 (79)
391 PF06855 DUF1250: Protein of u 27.6 96 0.0021 15.8 2.7 28 15-42 14-41 (46)
392 cd04400 RhoGAP_fBEM3 RhoGAP_fB 27.5 2E+02 0.0043 19.5 5.6 14 87-100 133-146 (190)
393 COG3947 Response regulator con 27.3 2.8E+02 0.006 21.0 7.5 67 19-88 282-353 (361)
394 PF13281 DUF4071: Domain of un 27.1 3E+02 0.0065 21.3 6.5 34 29-63 195-228 (374)
395 PF02259 FAT: FAT domain; Int 26.7 2.6E+02 0.0056 20.4 6.6 64 15-79 145-211 (352)
396 cd08780 Death_TRADD Death Doma 26.7 1.5E+02 0.0033 17.8 3.8 48 24-74 40-87 (90)
397 KOG2114 Vacuolar assembly/sort 26.3 2.8E+02 0.0061 24.1 6.1 73 19-101 708-784 (933)
398 cd08327 CARD_RAIDD Caspase act 26.2 1.1E+02 0.0024 18.4 3.1 48 11-63 30-77 (94)
399 PF11491 DUF3213: Protein of u 25.8 10 0.00022 22.3 -1.4 19 103-121 22-40 (88)
400 PF09797 NatB_MDM20: N-acetylt 24.9 3.1E+02 0.0067 20.7 6.5 67 20-89 184-253 (365)
401 PF15297 CKAP2_C: Cytoskeleton 24.8 2.8E+02 0.006 21.3 5.4 65 31-99 118-186 (353)
402 PF12926 MOZART2: Mitotic-spin 24.8 1.7E+02 0.0036 17.6 7.9 43 37-80 29-71 (88)
403 PF15469 Sec5: Exocyst complex 24.7 2.2E+02 0.0048 19.0 6.2 112 19-140 60-174 (182)
404 PF06552 TOM20_plant: Plant sp 24.6 2.4E+02 0.0053 19.4 7.5 83 16-101 28-126 (186)
405 KOG1920 IkappaB kinase complex 24.4 5.5E+02 0.012 23.4 7.9 46 85-130 932-977 (1265)
406 cd08326 CARD_CASP9 Caspase act 24.2 1.6E+02 0.0035 17.2 5.6 43 35-83 18-60 (84)
407 PF01335 DED: Death effector d 23.6 1.1E+02 0.0024 17.6 2.7 42 34-77 38-79 (84)
408 cd08320 Pyrin_NALPs Pyrin deat 23.4 1E+02 0.0022 18.2 2.4 26 54-79 47-72 (86)
409 TIGR02671 cas_csx9 CRISPR-asso 22.9 2.8E+02 0.0061 20.6 5.0 16 46-61 8-23 (377)
410 cd04402 RhoGAP_ARHGAP20 RhoGAP 22.8 2.1E+02 0.0044 19.5 4.3 20 7-26 76-97 (192)
411 COG5108 RPO41 Mitochondrial DN 22.8 3.8E+02 0.0082 22.9 6.1 44 57-101 33-78 (1117)
412 PF09477 Type_III_YscG: Bacter 22.7 2.1E+02 0.0045 18.0 5.9 80 3-91 24-106 (116)
413 KOG2199 Signal transducing ada 22.6 3.9E+02 0.0084 21.1 6.4 48 16-63 23-73 (462)
414 PF03943 TAP_C: TAP C-terminal 22.4 42 0.00092 17.7 0.6 22 30-51 27-48 (51)
415 KOG2041 WD40 repeat protein [G 22.1 5.2E+02 0.011 22.4 7.6 86 14-100 690-785 (1189)
416 PF05944 Phage_term_smal: Phag 22.0 1.9E+02 0.004 18.7 3.6 45 90-135 31-78 (132)
417 PF10963 DUF2765: Protein of u 21.7 1.8E+02 0.0039 17.2 3.2 32 48-79 12-43 (83)
418 cd08304 DD_superfamily The Dea 21.7 1.1E+02 0.0024 17.1 2.3 37 31-72 31-67 (69)
419 COG5159 RPN6 26S proteasome re 21.5 3.7E+02 0.008 20.4 9.0 107 23-131 10-151 (421)
420 KOG0890 Protein kinase of the 21.3 5.5E+02 0.012 25.3 7.3 86 5-94 1427-1523(2382)
421 COG1747 Uncharacterized N-term 21.2 4.8E+02 0.01 21.6 8.8 29 108-136 208-236 (711)
422 cd08325 CARD_CASP1-like Caspas 21.1 64 0.0014 18.8 1.3 56 6-66 20-76 (83)
423 KOG1147 Glutamyl-tRNA syntheta 21.0 69 0.0015 26.1 1.8 60 73-133 254-331 (712)
424 PHA00425 DNA packaging protein 20.8 2E+02 0.0042 17.0 5.5 40 67-108 14-60 (88)
425 KOG1538 Uncharacterized conser 20.8 4.8E+02 0.01 22.3 6.3 55 18-76 600-656 (1081)
426 cd00215 PTS_IIA_lac PTS_IIA, P 20.3 1.3E+02 0.0029 18.2 2.6 19 26-44 25-43 (97)
427 TIGR01529 argR_whole arginine 20.3 2.6E+02 0.0057 18.2 4.2 40 22-62 6-45 (146)
428 PF08542 Rep_fac_C: Replicatio 20.2 1.9E+02 0.0041 16.5 3.9 41 21-64 10-50 (89)
429 PRK05094 dsDNA-mimic protein; 20.2 1.2E+02 0.0027 18.8 2.4 39 32-71 13-52 (107)
430 TIGR00823 EIIA-LAC phosphotran 20.1 1.3E+02 0.0029 18.3 2.6 19 26-44 27-45 (99)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=204.62 Aligned_cols=144 Identities=36% Similarity=0.683 Sum_probs=137.6
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+++|.++|++|.+||+++||+||.+|+++|+.++|.++|++|.+ .|++||..||+++|.+|++.|.+++|.++|+.|..
T Consensus 376 ~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 99999999999999999999999999999999986
Q ss_pred hcCcCccHHHHHHHHHHHhcC---------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcccC
Q 047113 81 DFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~---------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 145 (145)
+.|+.|+..+|+++|++|++. .|+..+|++|+.+|+..|+++.|..+++++.+++|++...|++|
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 789999999999999999998 78999999999999999999999999999999999888777653
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=3.7e-30 Score=205.02 Aligned_cols=138 Identities=22% Similarity=0.332 Sum_probs=129.9
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+ .|++||..||++++.+|++.|.++.|.+++..|.
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~- 352 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI- 352 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-
Confidence 47899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hcCcCccHHHHHHHHHHHhcC--------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC--CCCCCCC
Q 047113 81 DFQLDLNLEHYGITVDLLATG--------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH--LDPKNDA 140 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~ 140 (145)
+.|+.||..+|++||++|+++ .||..+||+||.+|++.|+.++|.++|++|.+ +.|+..+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 899999999999999999998 78999999999999999999999999999887 5565433
No 3
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=2.5e-28 Score=198.18 Aligned_cols=143 Identities=41% Similarity=0.756 Sum_probs=137.3
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+ .|++||..||+.+|.+|++.|.+++|.++|+.|..
T Consensus 540 ~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 36899999999 89999999999999999999999999999999 99999999999999999999999999999999997
Q ss_pred hcCcCccHHHHHHHHHHHhcC---------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcccC
Q 047113 81 DFQLDLNLEHYGITVDLLATG---------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYTSL 145 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~---------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 145 (145)
+.|+.|+..+|++++++|++. .||..+|++|+.+|..+|+.+.++...+++.+++|+++.+|++|
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll 697 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697 (857)
T ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Confidence 799999999999999999999 89999999999999999999999999999999999999888764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=2.5e-28 Score=198.23 Aligned_cols=139 Identities=15% Similarity=0.236 Sum_probs=131.9
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.. .|++||..||+.+|.+|++.|+++.|.+++..|.
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~- 315 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVV- 315 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-
Confidence 36899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hcCcCccHHHHHHHHHHHhcC--------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC--CCCCCCCC
Q 047113 81 DFQLDLNLEHYGITVDLLATG--------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH--LDPKNDAY 141 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 141 (145)
+.|+.||..+||+||++|+++ .||..+||++|.+|++.|++++|.++|++|.+ +.|+..++
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 999999999999999999998 88999999999999999999999999999976 56755443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.3e-27 Score=195.50 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=96.5
Q ss_pred chHHHHhccCCC----CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID----KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~----~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.++|++|.+ |+..+||+||.+|++.|++++|.++|++|.+ .|+.||..+|+++|++|++.|+++.|.++|+.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456666666653 4556777777777777777777777777776 77777777777777777777777777777777
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC--CCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH--LDPK 137 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~ 137 (145)
|. +.|+.||..+|++||++|+++ .||..+||+||.+|++.|++++|.++|++|.+ +.|+
T Consensus 675 M~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 AR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 76 667777777777777777766 67777888888888888888888888887765 4454
Q ss_pred C
Q 047113 138 N 138 (145)
Q Consensus 138 ~ 138 (145)
.
T Consensus 754 ~ 754 (1060)
T PLN03218 754 T 754 (1060)
T ss_pred H
Confidence 3
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=4.4e-27 Score=192.40 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=88.8
Q ss_pred chHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhh
Q 047113 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
++|.++|+.|+.||..+||.||.+|++.|++++|.++|++|.+ .|+.||..+||++|++|++.|+++.|.++|++|. +
T Consensus 423 ~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~ 500 (1060)
T PLN03218 423 KEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-N 500 (1060)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-H
Confidence 3566666666666667777777777777777777777777766 6777777777777777777777777777777776 6
Q ss_pred cCcCccHHHHHHHHHHHhcC------------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 82 FQLDLNLEHYGITVDLLATG------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.|+.||..||++||++|++. .||..+||+||.+|++.|++++|.++|++|.
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677777777777777666 5666666666666666666666666666664
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.75 E-value=4.6e-18 Score=92.01 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=46.4
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
||+++||+||++|+++|++++|.++|++|.+ .|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 7899999999999999999999999999998 9999999999999999875
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=3.3e-16 Score=84.68 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhc
Q 047113 50 PNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 50 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 100 (145)
||..+||++|++|++.|++++|.++|++|. +.|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999999999999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=3.3e-11 Score=59.57 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 47 DGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 47 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
|++||..|||++|+++|+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.7e-10 Score=85.03 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=90.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHH----HHHHHHHHhhhhcCcCccHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIE----EGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~ 90 (145)
+..+||.+|.+-+-. ...++..+|.. ..++||..|||+++++.++.|+++ .+.+++.+|+ .-|++|+..+
T Consensus 241 ~~~aFN~lI~~~S~~----~~K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsS 314 (625)
T KOG4422|consen 241 YREAFNGLIGASSYS----VGKKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSS 314 (625)
T ss_pred eHHhhhhhhhHHHhh----ccHHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhh
Confidence 344555555444322 22566677788 889999999999999999999876 4678888998 8999999999
Q ss_pred HHHHHHHHhcC---------------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 91 YGITVDLLATG---------------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 91 ~~~li~~~~~~---------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
|..+|..+++. +.|...|-+.|+.|.+..+.+-|.++..-++.
T Consensus 315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999887 44667899999999999999999988776553
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.16 E-value=5.1e-11 Score=58.88 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhH
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVI 43 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~ 43 (145)
+||.+|||+||++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999994
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.06 E-value=2.9e-10 Score=56.14 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN 52 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~ 52 (145)
++||+||.+|++.|++++|.++|++|.+ .|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCC
Confidence 4799999999999999999999999999 9999984
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.01 E-value=2.5e-09 Score=80.03 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=35.3
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.++|+++.. ++..+++.++..+.+.|++++|.+.|+.+.. .+-.+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 345555554432 2344555555555555555555555555544 221111 11223344444445555555555
Q ss_pred HHHhh
Q 047113 75 FDIMV 79 (145)
Q Consensus 75 ~~~m~ 79 (145)
++++.
T Consensus 203 ~~~al 207 (389)
T PRK11788 203 LKKAL 207 (389)
T ss_pred HHHHH
Confidence 55544
No 14
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.98 E-value=1.1e-09 Score=53.91 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP 50 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p 50 (145)
+++||++|.+|++.|++++|.++|++|++ .|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence 36899999999999999999999999998 89887
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.95 E-value=6.2e-09 Score=77.95 Aligned_cols=128 Identities=15% Similarity=0.043 Sum_probs=73.4
Q ss_pred chHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+++.+ | +...|..+...+.+.|++++|...|+++.. .+-.....+++.+..++.+.|+++.|...++.+
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555432 2 344566666666666666666666666654 221112345566666666666666666666666
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHh---ccChhHHHHHHccCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG----------------ETEPYVWGALLGACRI---HHNVKIGELVAKDPFH 133 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~ 133 (145)
. . ..|+...+..++..|.+. .|+..+++.++..+.. .|+.+++..+++++.+
T Consensus 276 ~-~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 276 L-E--EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred H-H--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6 2 234544555566655554 5666666666666553 3466666666666554
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.6e-08 Score=75.77 Aligned_cols=110 Identities=19% Similarity=0.127 Sum_probs=94.4
Q ss_pred hccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc
Q 047113 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 8 f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 87 (145)
+-+..++...||.+||.+.|+--..+.|.+++++-+. ...+.+..+||.+|.+-+-. .+..+..+|. ...+.||
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi-sqkm~Pn 272 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VGKKLVAEMI-SQKMTPN 272 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----ccHHHHHHHH-HhhcCCc
Confidence 3344445668999999999999999999999999998 88899999999999876644 3478889999 7889999
Q ss_pred HHHHHHHHHHHhcC----------------------CCchhhHHHHHHHHHhccChhH
Q 047113 88 LEHYGITVDLLATG----------------------ETEPYVWGALLGACRIHHNVKI 123 (145)
Q Consensus 88 ~~~~~~li~~~~~~----------------------~p~~~~~~~li~~~~~~g~~~~ 123 (145)
..|+|+++++.++- .|...+|..+|.-+++.++..+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 99999999988876 8899999999999999888744
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.86 E-value=3.8e-08 Score=79.66 Aligned_cols=133 Identities=8% Similarity=-0.063 Sum_probs=78.9
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|.+.|+.+. +.+..+|..+...+...|++++|..+++.+.. .. +.+...+..+...+...|+++.|...++.+.
T Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455554432 22445566666666666666666666666654 32 3345556666666666666666666666665
Q ss_pred hhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 80 HDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
. ..|+..++..+..+|.+. +.+..+++.+...|...|+.++|...++++.+..|+++.
T Consensus 731 -~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 731 -K--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred -h--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 2 234435555555555544 445566777777777777777777777777776665543
No 18
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.79 E-value=8.1e-09 Score=49.54 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCC
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDG 48 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~ 48 (145)
++||+||++|++.|++++|.++|++|.+ .|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~-~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE-RGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH-CcC
Confidence 4788899999999999999999988887 664
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.74 E-value=1.3e-07 Score=76.59 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 105 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
..+|..+...+...|++++|..+++.+.+..|
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 34444444555555555555555554444444
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=1.1e-07 Score=68.62 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred chHHHHhccC--CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 2 DDAERIFGGI--IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 2 ~~A~~~f~~m--~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++|.++++.. +.++...+..++..+.+.|+++++..+++........+++...|..+-..+.+.|+.+.|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555555544 23566778889999999999999999999976523455678888888899999999999999999998
Q ss_pred hhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 80 HDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 80 ~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
...| |....+.++..+... +.|...|..+-.+|...|+.++|+..+++..+..|+++..
T Consensus 174 ---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 ---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp ---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred ---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 3456 477777888777755 4566778889999999999999999999988888877643
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.67 E-value=2.7e-08 Score=48.83 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccH
Q 047113 53 VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNL 88 (145)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 88 (145)
.+||++|++|++.|++++|.++|++|. +.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 379999999999999999999999999 88999973
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=4.3e-07 Score=59.48 Aligned_cols=115 Identities=8% Similarity=0.031 Sum_probs=93.3
Q ss_pred HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC
Q 047113 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD 85 (145)
Q Consensus 7 ~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 85 (145)
+|+...+-++..+..+-.++.+.|++++|...|+.... +.| +...|..+-.++...|+++.|...|+... . ..
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~--l~ 88 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-M--LD 88 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h--cC
Confidence 33333333444566778889999999999999999865 345 77889999999999999999999999998 3 34
Q ss_pred ccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 86 LNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 86 ~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
|+ +...+..+-.++...|++++|...+++..+..|+++.++.
T Consensus 89 p~----------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 89 AS----------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred CC----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 43 6677888888999999999999999999999998876653
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.62 E-value=5.3e-08 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc
Q 047113 53 VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
.|||++|.+|++.|+++.|.++|+.|. +.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 589999999999999999999999999 889987
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.56 E-value=3.8e-06 Score=57.59 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=95.7
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|++.. +.+...|..+...+...|++++|...|++..+ .. +.+...+..+...+...|++++|...++..
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45666666542 23566788888899999999999999988765 32 235567777888888999999999999988
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
............+..+..+|.+. +.+...+..+...+...|++++|...+++..+..|++
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 73212222344555555555544 3345678888888899999999999988877665543
No 25
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.44 E-value=4.3e-06 Score=57.82 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=82.6
Q ss_pred HHHhccC--CCCchhhHHHHHHHHHHc-----CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc-----------
Q 047113 5 ERIFGGI--IDKNVVIWSGMIASHAIH-----GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG----------- 66 (145)
Q Consensus 5 ~~~f~~m--~~~~~~~~~~li~a~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------- 66 (145)
...|+.. ..+|-.+|..+|..+.+. |..+=....++.|.+ .|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 4566665 567889999999999864 778888999999999 999999999999999987632
Q ss_pred -----hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 67 -----LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 67 -----~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
+-+-|..++++|. +.|+.||..|+..|++.+++.
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccc
Confidence 3367999999999 999999999999999999988
No 26
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.42 E-value=3e-07 Score=43.86 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhhhcCc
Q 047113 53 VTFLSILFACSYSGLIEEGIKVFDIMVHDFQL 84 (145)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 84 (145)
+|||++|++|++.|++++|.++|++|. +.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCcC
Confidence 489999999999999999999999999 7664
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.40 E-value=2e-05 Score=62.95 Aligned_cols=130 Identities=12% Similarity=-0.020 Sum_probs=78.7
Q ss_pred hHHHHhccCC--CC-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 3 DAERIFGGII--DK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 3 ~A~~~f~~m~--~~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
+|...|+... .| +..+|..+...+...|++++|...|+.... . .| +...|..+-..+...|+++.|...|+..
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-L--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555332 12 344566666666667777777777766544 2 23 4556666666667777777777777666
Q ss_pred hhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 79 VHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
. . +.| +...+..+..++.+. +.+...|+.+-..+...|++++|...|++..++.|..
T Consensus 426 l-~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 426 I-D--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred H-H--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 6 2 233 344444444444433 3345677777777778888888888887777766643
No 28
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.38 E-value=1.2e-05 Score=50.13 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCC-CCcHHHHHHHHHHhhccch--------HHHHHHHHHHhhhhcCcCcc
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGL--------IEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~m~~~~~~~~~ 87 (145)
.|-...|..|...+++.....+|+.+++ .|+ .|+..+|+.++.+-++... .-....+++.|. ..++.|+
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~ 103 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPN 103 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCc
Confidence 3556788889999999999999999999 999 9999999999999887542 346788999999 8899999
Q ss_pred HHHHHHHHHHHhc
Q 047113 88 LEHYGITVDLLAT 100 (145)
Q Consensus 88 ~~~~~~li~~~~~ 100 (145)
..||+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999977654
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.36 E-value=5e-06 Score=66.30 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=107.8
Q ss_pred chHHHHhccCCC-----C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-----K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-----~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+.|+.... | +...|+.+...+...|++++|+..|+...+ +.|+ ...|..+...+...|+++.|...
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456677775432 2 456789999999999999999999999765 3564 66888888899999999999999
Q ss_pred HHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 75 FDIMVHDFQLDL-NLEHYGITVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 75 ~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
|+... +. .| +...|..+...|... .| +...|..+...+.+.|++++|+..+++..+..|
T Consensus 388 ~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 388 FDKAL-KL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99988 32 34 577888888777765 44 567888888999999999999999999888888
Q ss_pred CCCCCc
Q 047113 137 KNDAYY 142 (145)
Q Consensus 137 ~~~~~~ 142 (145)
+++..+
T Consensus 465 ~~~~~~ 470 (615)
T TIGR00990 465 EAPDVY 470 (615)
T ss_pred CChHHH
Confidence 776544
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.6e-06 Score=66.66 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=96.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
...+|.++-+.|+-.++++.|+++|++..+ +.| ...+|+.+-+-......+|.|...|+... ..|..+||+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnA 491 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNA 491 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHH
Confidence 457899999999999999999999999866 556 78899999999999999999999998887 445555554
Q ss_pred ---HHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 94 ---TVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 94 ---li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
|.-.|.|. +.+.+....+...+-+.|+.|+|++++++...++|.++
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 45566666 55677777788888888888889888888888888765
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.30 E-value=9.4e-06 Score=67.80 Aligned_cols=30 Identities=7% Similarity=-0.154 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.+..+-.++...|++++|+..+++..+..|
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 333444444444444444444444444333
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.1e-06 Score=62.62 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=105.6
Q ss_pred CchHHHHhccCCCC------chhhHHHHH-------------------------------HHHHHcCChHHHHHHHHHhH
Q 047113 1 MDDAERIFGGIIDK------NVVIWSGMI-------------------------------ASHAIHGQEREALEAFYLVI 43 (145)
Q Consensus 1 ~~~A~~~f~~m~~~------~~~~~~~li-------------------------------~a~~~~g~~~~A~~~~~~m~ 43 (145)
+|+|+.+|+++.+. |..+|+.++ +-|+-.+++++|...|++..
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 47899999988642 445555444 45556778999999999976
Q ss_pred hhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCc
Q 047113 44 HCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG-----------------ETE 104 (145)
Q Consensus 44 ~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~ 104 (145)
+ +-| ....|+.+-+-|....+...|.+-++... .+.| |-..|-.|.++|.-. +.|
T Consensus 358 k---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 358 K---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred h---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 5 445 46689999999999999999999999998 3555 899999999999876 558
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 105 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
...|.+|-+.|.+.++.++|...|.+.....
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999876643
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.27 E-value=1.4e-06 Score=70.28 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=85.6
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC------------------------CCCcHHHHHHHHHHhhccchH
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD------------------------GKPNNVTFLSILFACSYSGLI 68 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~------------------------~~p~~~~~~~ll~~~~~~~~~ 68 (145)
.||-+||..+|.-||..|+.+.|- +|..|+. .. -.|...||+.++.+|.+.|++
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 378899999999999999999999 8887733 21 346677888888888888876
Q ss_pred HH---HHHHHHHhhh---hcC-----------------cCccH----------HHHHHHHHHHhcC--------------
Q 047113 69 EE---GIKVFDIMVH---DFQ-----------------LDLNL----------EHYGITVDLLATG-------------- 101 (145)
Q Consensus 69 ~~---a~~~~~~m~~---~~~-----------------~~~~~----------~~~~~li~~~~~~-------------- 101 (145)
.. .++.+..+.. ..| +-||. ..|..+++...++
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr 179 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR 179 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence 43 2221111110 111 12332 2355555555444
Q ss_pred ---------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 102 ---------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 102 ---------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
.|+..++..++++-...|+++-|..+..+|++-.
T Consensus 180 qnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 180 QNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 5899999999999999999999999999999843
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.27 E-value=4.9e-05 Score=52.02 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=96.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|++.. +.+...+..+...+...|++++|...|++... ....| ....+..+-..+...|+++.|...+..
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677776443 34567888899999999999999999999876 43223 455677778888999999999999999
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
.. ... ..+...+..+...+.+. +.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 161 ~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 161 AL-QID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HH-HhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88 322 22455666676666655 335567778888889999999999988776543
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.25 E-value=1.6e-05 Score=63.95 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYL 41 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~ 41 (145)
.|..+..++.+.|++++|...++.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHH
Confidence 344444444444444444444443
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.24 E-value=1.5e-05 Score=64.18 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHH----HHHHHHHhhhhcCcCc-cHHHHHHHHH
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE----GIKVFDIMVHDFQLDL-NLEHYGITVD 96 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~-~~~~~~~li~ 96 (145)
+..++.+.|++++|...|+.... .. +-+...+..+-..+.+.|++++ |...++... . ..| +...+..+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~-~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al-~--l~P~~~~a~~~lg~ 292 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA-RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL-Q--FNSDNVRIVTLYAD 292 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-h--hCCCCHHHHHHHHH
Confidence 33444455555555555555433 21 1133344445555555555543 455555554 1 223 3444555555
Q ss_pred HHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 97 LLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 97 ~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.+.+. .| +...+..+..++.+.|++++|...++.+.+..|+.
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 44443 22 33455555566666666666666666665555544
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.23 E-value=2.6e-05 Score=65.21 Aligned_cols=135 Identities=10% Similarity=-0.039 Sum_probs=104.3
Q ss_pred chHHHHhccCCC--CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|...|+.+.. |+...+..+..++.+.|++++|...|++... .. |+ ...+..+.......|++++|...++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 578888886543 4455677778889999999999999999876 43 43 333334444455669999999999999
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
. ...|+...|..+..++.+. .| +...++.+-.++...|++++|...+++..+..|+++..
T Consensus 603 L---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 L---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred H---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8 3567788888888877776 44 55678888889999999999999999999999987654
Q ss_pred c
Q 047113 142 Y 142 (145)
Q Consensus 142 ~ 142 (145)
+
T Consensus 680 ~ 680 (987)
T PRK09782 680 I 680 (987)
T ss_pred H
Confidence 4
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=5.5e-05 Score=52.15 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=82.2
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHH-hhccch--HHHHHHHHHHhhhhcCcCccHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFA-CSYSGL--IEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~-~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
.|...|..|-..|...|++++|...|+.... +.| |...+..+-.+ +.+.|+ .++|.+++++.. + ..|+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al-~--~dP~-- 142 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL-A--LDAN-- 142 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-H--hCCC--
Confidence 4778899999999999999999999998765 445 56677776665 356666 489999999888 3 3332
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 90 HYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 90 ~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+..++..+-..+...|++++|...|+++.+..|.+.
T Consensus 143 --------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 143 --------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred --------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 666777788889999999999999999998766544
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.19 E-value=5.7e-05 Score=55.13 Aligned_cols=117 Identities=15% Similarity=-0.002 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccH---HH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNL---EH 90 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~ 90 (145)
+...|+.+-..+.+.|++++|...|+...+ +.| +..+|..+-.++...|++++|.+.|+... + ..|+- ..
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al-~--~~P~~~~~~~ 170 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY-Q--DDPNDPYRAL 170 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHH
Confidence 456677777777777777777777776644 344 34455556666666666666666665554 1 11211 11
Q ss_pred HHHHHH------------------------------HHhcC---------------------CCchhhHHHHHHHHHhcc
Q 047113 91 YGITVD------------------------------LLATG---------------------ETEPYVWGALLGACRIHH 119 (145)
Q Consensus 91 ~~~li~------------------------------~~~~~---------------------~p~~~~~~~li~~~~~~g 119 (145)
|..+.. .+... +.....|..+-..+...|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 111110 00000 112346777888888899
Q ss_pred ChhHHHHHHccCCCCCCC
Q 047113 120 NVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~ 137 (145)
++++|...|++..+.+|+
T Consensus 251 ~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 251 DLDEAAALFKLALANNVY 268 (296)
T ss_pred CHHHHHHHHHHHHHhCCc
Confidence 999999999988887763
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=6e-05 Score=48.20 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+......+...+.+.|++++|.+.|..... .+ +.+...+..+-..+...|+++.|...++... .. .|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~--~p-------- 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA-YD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-AL--DP-------- 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--CC--------
Confidence 455667778888999999999999999866 43 3367788889999999999999999999887 32 23
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.+...+..+-..|...|++++|...+++..+..|+++.
T Consensus 83 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 --------DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 24555666677888899999999999999998887654
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.18 E-value=1e-05 Score=58.36 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=82.5
Q ss_pred hHHHHhccCC-----CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 3 DAERIFGGII-----DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 3 ~A~~~f~~m~-----~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++.++++... +++...|..+...+.+.|++++|.++|++..+ ..| |....+.++..+...|+.+++.++++
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 4555665532 24677899999999999999999999999865 457 47788999999999999999999999
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
... +.. +.|...|..+..+|... +.|......+..++...|+.++|..+.+++.+
T Consensus 205 ~~~-~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 205 RLL-KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHH-HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHH-HHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 988 332 44566677777777655 44777888888999999999999999887654
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.17 E-value=5.2e-06 Score=65.22 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGIT 94 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l 94 (145)
+.|..|-..|...|+.|.|+..|++..+ ++|+ ...||.|-.+....|.+.+|.+.+.... .+.|+ ...-+.|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL---~l~p~hadam~NL 360 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL---RLCPNHADAMNNL 360 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH---HhCCccHHHHHHH
Confidence 3444444444444555555555554432 3343 3355555555555555555555555444 22332 3334444
Q ss_pred HHHHhcC----------------CCch-hhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 95 VDLLATG----------------ETEP-YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 95 i~~~~~~----------------~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
..+|... -|+. ...|.|-..|..+|++++|...+++..++.|..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 4444433 2322 244555555555555555555555555555543
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=2.5e-05 Score=61.52 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=79.3
Q ss_pred hHHHHhccCC--CC-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 3 DAERIFGGII--DK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 3 ~A~~~f~~m~--~~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
-|...+++.- .| -...||.|-.|+-..|++.+|.++|..... +.|+ ..+.+.+-..+.+.|.++.|..+|...
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455555332 12 244566666666666666666666665533 3332 334555555555555555555554443
Q ss_pred hhh-------------------------------cCcCcc-HHHHHHHHHHHhcC----------------CCch-hhHH
Q 047113 79 VHD-------------------------------FQLDLN-LEHYGITVDLLATG----------------ETEP-YVWG 109 (145)
Q Consensus 79 ~~~-------------------------------~~~~~~-~~~~~~li~~~~~~----------------~p~~-~~~~ 109 (145)
..- -.+.|+ ...|+.+...|-.. .|.. ...+
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 300 034443 23333333222222 4443 5788
Q ss_pred HHHHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 110 ALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 110 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
.|-..|...|++.+|..-++...+++||.|..|.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 8889999999999999999999999998887664
No 44
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.15 E-value=5.6e-05 Score=48.40 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHh---------------HhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLV---------------IHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m---------------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
|..++.++|.++++.|+.+....+.+.. +. +.+.|+..+..+++.+++..|++..|..+.+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~-spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs 79 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPS-SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS 79 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCC-CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5678999999999999999999988764 12 4467899999999999999999999999999999
Q ss_pred hhcCcCccHHHHHHHHHHH
Q 047113 80 HDFQLDLNLEHYGITVDLL 98 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~ 98 (145)
..++++.+..+|..|++=.
T Consensus 80 ~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 80 RKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHcCCCCCHHHHHHHHHHH
Confidence 8899888888898888633
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=98.14 E-value=7.1e-05 Score=59.17 Aligned_cols=130 Identities=9% Similarity=-0.060 Sum_probs=92.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|...+++.. +.+...|..+-..+...|++++|...|++..+ +.| +...+..+-..+...|++++|...+++
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35666666442 34677898998899999999999999999866 346 466788888889999999999999999
Q ss_pred hhhhcCcCccH-HHHHHHHH-HHhcC----------------CCch-hhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 78 MVHDFQLDLNL-EHYGITVD-LLATG----------------ETEP-YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 78 m~~~~~~~~~~-~~~~~li~-~~~~~----------------~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.. + +.|+. ..+..+.. .|... .|+. ..+..+-..+...|++++|...++++....|.
T Consensus 398 Al-~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CL-K--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HH-h--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 88 3 34432 22222221 22211 3443 45666777888999999999999887666554
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.08 E-value=7.3e-06 Score=66.36 Aligned_cols=84 Identities=25% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-------CCchhhHH
Q 047113 37 EAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------ETEPYVWG 109 (145)
Q Consensus 37 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------~p~~~~~~ 109 (145)
.++..|+. .|+.||-+||..+|.-||..|+++.|- +|..|. -....-+...++.++.+-.+. .|...+|+
T Consensus 11 nfla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt 87 (1088)
T KOG4318|consen 11 NFLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT 87 (1088)
T ss_pred hHHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence 35667778 999999999999999999999999999 999998 677777899999999876655 77888999
Q ss_pred HHHHHHHhccChhH
Q 047113 110 ALLGACRIHHNVKI 123 (145)
Q Consensus 110 ~li~~~~~~g~~~~ 123 (145)
+|+.+|..+|++..
T Consensus 88 ~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHhccchHH
Confidence 99999999999855
No 47
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.06 E-value=3e-05 Score=59.09 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=78.8
Q ss_pred chHHHHhccCCC-C-----chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGIID-K-----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~~-~-----~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
|+++.++...+. | -..|..++|..|.+.|..++++.+++.=.. .|+=||..|||.+|+.+.+.|++..|.++.
T Consensus 83 d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 83 DEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred HHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 456666665553 2 124567999999999999999999999888 999999999999999999999999999999
Q ss_pred HHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 76 DIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 76 ~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
..|. ..+.-.+..|+..-+.+|.+.
T Consensus 162 ~~~~-lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 162 TEMM-LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHH-HhhccCCchHHHHHHHHHHHh
Confidence 9998 555556666766555555444
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=0.00014 Score=42.06 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
+|..+...+.+.|++++|...|++..+ .. +.+...+..+...+...++++.|...++... +.. |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~--~----------- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-LD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELD--P----------- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC--C-----------
Confidence 466778888999999999999999865 32 2344677888888899999999999999887 322 2
Q ss_pred HhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 98 LATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 98 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.+..++..+...+...|++++|...+.+..+..|
T Consensus 66 -----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 66 -----DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -----cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 1335666777888889999999999988766555
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00012 Score=55.45 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhc
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 100 (145)
+|+..+...++++.|..+|+++.+ .. |+.. ..+...+...++-.+|.+++++.... .+.+......-.+-|.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE-RD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh-cC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 444555556677777777777765 33 4433 34555555566666666666666521 12233333322222322
Q ss_pred C----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 101 G----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 101 ~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
. .| +..+|..|..+|...|+++.|+...+-+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 2 44 556999999999999999999999887654
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.95 E-value=0.00017 Score=52.72 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 93 (145)
...|..+-..+.+.|++++|...|++..+ +.| +...|+.+-..+...|+++.|...|+... .+.|+ ...|..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---~l~P~~~~a~~~ 137 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 34688888899999999999999999865 345 57899999999999999999999999998 34564 556666
Q ss_pred HHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 94 TVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 94 li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+..++... .|+..........+...++.++|...+++..
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66655443 4433211111122345677888888886533
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=2.8e-05 Score=61.03 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-|...|.+.++++.|+-.|+...+ +-| +.+....+...+-+.|..|+|.+++++..
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 344445555555555555544422 333 33344444444455555555555555544
No 52
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=5.3e-05 Score=54.62 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=78.1
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 102 (145)
+-..+++++++|+..|.+..+ +.| |.+-|..--.+|++.|+++.|.+-.+... .+.|.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~--------------- 147 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPH--------------- 147 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChH---------------
Confidence 445678899999999999876 455 78888999999999999988887666665 23332
Q ss_pred CchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
-..+|..|-.+|...|++++|.+.|++..+++|++.++
T Consensus 148 -yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 148 -YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred -HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 45678889999999999999999999999999988754
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.88 E-value=0.00035 Score=57.34 Aligned_cols=138 Identities=9% Similarity=-0.016 Sum_probs=72.2
Q ss_pred chHHHHhccCCCC--chh--hHHHHHHHHHHcCChHHHHHHHHHhHhhcC-CCC--cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIIDK--NVV--IWSGMIASHAIHGQEREALEAFYLVIHCSD-GKP--NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~~--~~~--~~~~li~a~~~~g~~~~A~~~~~~m~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+.|+.+... +.. .--.+..+|...|++++|+.+|++... .. ..+ .......+..++.+.|++++|.++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~-~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY-HPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh-cCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4566666666431 111 111135567777777777777776544 22 110 123445555566777777777777
Q ss_pred HHHhhhhcC----------cCcc---HHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHH
Q 047113 75 FDIMVHDFQ----------LDLN---LEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIG 124 (145)
Q Consensus 75 ~~~m~~~~~----------~~~~---~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a 124 (145)
++.+..... -.|+ ...+..+...+... +.+...+..+...+...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 776662210 1123 12222333333322 33445666666666666666666
Q ss_pred HHHHccCCCCCCCCCC
Q 047113 125 ELVAKDPFHLDPKNDA 140 (145)
Q Consensus 125 ~~~~~~~~~~~~~~~~ 140 (145)
+..+++..+..|+++.
T Consensus 413 ~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 413 ENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhhCCCChH
Confidence 6666666666665543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=97.87 E-value=0.00022 Score=56.40 Aligned_cols=134 Identities=8% Similarity=-0.087 Sum_probs=93.6
Q ss_pred chHHHHhccCCC--C-chhhHHHHHHHHH---------HcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchH
Q 047113 2 DDAERIFGGIID--K-NVVIWSGMIASHA---------IHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLI 68 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~li~a~~---------~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~ 68 (145)
++|.+.|++.-+ | +...|..+-.++. ..+++++|...+++..+ +.| +...+..+-..+...|++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~---ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE---LDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHccCH
Confidence 467777876543 3 4556766655444 23458999999999866 446 577888888888999999
Q ss_pred HHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCch-hhHHHHHHHHHhccChhHHHHHHcc
Q 047113 69 EEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG----------------ETEP-YVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 69 ~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
++|...+++.. + ..| +...|..+..+|... .|+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al-~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQAN-L--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999998 3 345 466677776666655 4543 3344455567778999999999998
Q ss_pred CCCC-CCCCCCC
Q 047113 131 PFHL-DPKNDAY 141 (145)
Q Consensus 131 ~~~~-~~~~~~~ 141 (145)
+.+. .|+++..
T Consensus 432 ~l~~~~p~~~~~ 443 (553)
T PRK12370 432 LRSQHLQDNPIL 443 (553)
T ss_pred HHHhccccCHHH
Confidence 7664 3555543
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.81 E-value=0.00038 Score=52.93 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 105 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.....++-..|.+.|++++|.+.|+...+..|++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 3445566666666677777777776666666644
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.77 E-value=0.0016 Score=49.68 Aligned_cols=134 Identities=11% Similarity=-0.079 Sum_probs=95.8
Q ss_pred chHHHHhccCCC--Cch--hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV--VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~--~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|....+ |+. ..--.....+.+.|++++|...++.+.+ . .| +....-.+...+.+.|+++.+.+++.
T Consensus 135 ~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~-~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 135 ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLE-M--APRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566655421 332 2333346777789999999999999977 3 35 66688899999999999999999999
Q ss_pred HhhhhcCcCccHH-------HHHHHHHH------------HhcCC-----CchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 77 IMVHDFQLDLNLE-------HYGITVDL------------LATGE-----TEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 77 ~m~~~~~~~~~~~-------~~~~li~~------------~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.+. +.+..+... .+..++.. +.+.. .+...+-.+...+...|+.++|..+.++..
T Consensus 212 ~l~-k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 212 NMA-KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999 665433221 12222211 11113 377889999999999999999999999999
Q ss_pred CCCCCCC
Q 047113 133 HLDPKND 139 (145)
Q Consensus 133 ~~~~~~~ 139 (145)
+..|++.
T Consensus 291 ~~~pd~~ 297 (409)
T TIGR00540 291 KKLGDDR 297 (409)
T ss_pred hhCCCcc
Confidence 8888665
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.77 E-value=0.00065 Score=58.16 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=53.4
Q ss_pred chHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++|.++++. .+.+...+..+-..+.+.|++++|...|+...+ . .| +...+..+...+...|++++|...++...
T Consensus 590 ~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 590 AEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-R--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 355666662 223555667777888888888888888888765 2 34 56677888888888888888888888766
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0011 Score=41.00 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcC-CCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSD-GKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.++-.+...+.+.|++++|...|..+.. .. -.| ....+..+..++.+.|+++.|...++.+.... |+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~------ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK-KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKS------ 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCC------
Confidence 3566778888999999999999999876 32 111 13466678888999999999999999988322 220
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+....++..+...+...|+.++|...++++.+..|+++.
T Consensus 73 -------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 -------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 011334555667788899999999999999888886653
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.00017 Score=54.04 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 102 (145)
....+.|++++|+.+|++..+ ..| +...|..+-.++.+.|+++.|...+++.. . +.|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~--l~P~--------------- 68 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAI-E--LDPS--------------- 68 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCcC---------------
Confidence 445667788888888887755 234 45667777777777888888888777777 2 2332
Q ss_pred CchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+...|..+-.+|...|++++|...+++..++.|+++.
T Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 69 -LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 3445555666777777777777777777777766554
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.68 E-value=0.00028 Score=57.93 Aligned_cols=125 Identities=8% Similarity=-0.034 Sum_probs=88.0
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.++|....+ .+...+..+..++.+.|++++|..+|++... ..| +...+..+...+...|++++|...++.
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS---LEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 467777776643 2444688888899999999999999988755 234 455667777788889999999999998
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. .. .| +.. +..+..++... .| +...+..+...+...|..++|+..++....
T Consensus 109 ~l-~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 109 LV-SG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HH-Hh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 87 22 33 344 66666555554 33 444556666777777787888877776654
No 61
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.67 E-value=0.00068 Score=58.05 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH---
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD--- 96 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~--- 96 (145)
.+-.++.+.|++++|+..|++..+ ..| |...+..+-.++.+.|++++|...|++......-.+....|..++.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 334566778888888888888755 235 5677777778888888888888888887722211112222222221
Q ss_pred ---------HHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 97 ---------LLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 97 ---------~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.+.+. +.+...+..+-..+...|++++|++.|++..+..|+++.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 11111 335567777888888889999999999888888776543
No 62
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.0024 Score=49.00 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=100.6
Q ss_pred chHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|+..++.+.. | |..-+......+.+.|+.++|.+.++.+.. ..|+ ..-.-.+-.++.+.|+..+|..++..
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 567777776632 4 566677788899999999999999999854 5676 44556677788899999999999988
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
-. .....|...|..|-.+|.+.......--+.-.+|...|+++.|........+
T Consensus 400 ~~--~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 400 YL--FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred Hh--hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 87 3446678899999999999865666666777888999999999888887665
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.61 E-value=0.0011 Score=56.60 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=94.0
Q ss_pred chHHHHhccCCC--------CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHhhccchHHHHH
Q 047113 2 DDAERIFGGIID--------KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFACSYSGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m~~--------~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 72 (145)
++|++++++..+ --...|-++++.-...|.-+...++|++..+ -.|+ ..|..|...|.+.+.++.|.
T Consensus 1475 ekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq----ycd~~~V~~~L~~iy~k~ek~~~A~ 1550 (1710)
T KOG1070|consen 1475 EKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ----YCDAYTVHLKLLGIYEKSEKNDEAD 1550 (1710)
T ss_pred HHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHhhcchhHH
Confidence 567777775432 1345788888877777888888888888765 3343 36788888888888888888
Q ss_pred HHHHHhhhhcCcCccHHHHHHHHHHHhcC---------------------------------------------------
Q 047113 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG--------------------------------------------------- 101 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------------------------------------------------- 101 (145)
++++.|.++.| ....+|..+++.+.+.
T Consensus 1551 ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1551 ELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 88888886666 6677777777777665
Q ss_pred --CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 102 --ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 102 --~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+.-...|+..|+.=.++|+.+.++.+|++...
T Consensus 1629 ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1629 AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 22445788889988999999999999988765
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.61 E-value=0.00058 Score=56.36 Aligned_cols=131 Identities=9% Similarity=0.028 Sum_probs=86.2
Q ss_pred chHHHHhccCCC--Cch--hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH---HHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV--VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV---TFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~--~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|...|++..+ |+. ..+ .++..+...|+.++|...+++.. .|+.. ....+...+...|++++|.++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456777776643 332 233 88888888899999988888764 24322 223334567788999999999
Q ss_pred HHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 75 FDIMVHDFQLDL-NLEHYGITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 75 ~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
++.+. + ..| +...+..++..|.+. .|+...+-.++..+...++..+|++.++++.+..|+
T Consensus 125 y~kaL-~--~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 125 WQSSL-K--KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHH-h--hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 99888 2 233 355556666666655 556555544444444466666688999988888887
Q ss_pred CCCC
Q 047113 138 NDAY 141 (145)
Q Consensus 138 ~~~~ 141 (145)
++..
T Consensus 202 n~e~ 205 (822)
T PRK14574 202 SEEV 205 (822)
T ss_pred CHHH
Confidence 7654
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.58 E-value=0.001 Score=43.46 Aligned_cols=76 Identities=8% Similarity=-0.002 Sum_probs=65.0
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+-.++.+.|++++|...|+.... .+ +.+...+..+-.++.+.|+.++|...|+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM-LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788888553 34778999999999999999999999999876 33 237788999999999999999999999998
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 119 l 119 (144)
T PRK15359 119 I 119 (144)
T ss_pred H
Confidence 8
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0017 Score=43.51 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
....|..+...+.+.|++++|...|++... ..-.+. ...+..+-..+.+.|+++.|...+.+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445788888999999999999999999865 332332 4578888899999999999999999888
No 67
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.52 E-value=0.0027 Score=46.12 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=80.2
Q ss_pred HHHhccCC--CCchhhHHHHHHHHHHc-----CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchH---------
Q 047113 5 ERIFGGII--DKNVVIWSGMIASHAIH-----GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLI--------- 68 (145)
Q Consensus 5 ~~~f~~m~--~~~~~~~~~li~a~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~--------- 68 (145)
++.|...+ ++|-.+|=+++..+..+ +.++=....++.|++ .|+..|..+|+.||..+-+..-+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 45677666 57888899999888754 567778888999999 99999999999999998775432
Q ss_pred -------HHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 69 -------EEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 69 -------~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
+=+..++++|. ..|+.||-.+-..|++++++.
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccc
Confidence 34788999999 999999999999999999988
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.52 E-value=0.0041 Score=47.32 Aligned_cols=131 Identities=8% Similarity=-0.011 Sum_probs=88.5
Q ss_pred chHHHHhccCCC--CchhhHH--HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNVVIWS--GMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~~~~--~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+.|...|.++.+ |+....- .....+.+.|++++|...+++..+ . .| +......+...+.+.|+|+++..++.
T Consensus 135 ~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~-~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 135 ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE-V--APRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456777776644 3332222 235577889999999999999866 3 35 57788899999999999999999999
Q ss_pred HhhhhcCcC-ccH------HHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 77 IMVHDFQLD-LNL------EHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 77 ~m~~~~~~~-~~~------~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.+. +.+.. |.. ..|..++....+. +.+......+..++...|+.++|..+.++..
T Consensus 212 ~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 212 SMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999 44433 221 1222222211111 4466677778888888888888888888766
Q ss_pred CCCC
Q 047113 133 HLDP 136 (145)
Q Consensus 133 ~~~~ 136 (145)
+..+
T Consensus 291 ~~~~ 294 (398)
T PRK10747 291 KRQY 294 (398)
T ss_pred hcCC
Confidence 6333
No 69
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0018 Score=40.46 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=53.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhcCc-CccHHHHHHHHHHHhcC--------------------------CCchh
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMVHDFQL-DLNLEHYGITVDLLATG--------------------------ETEPY 106 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~--------------------------~p~~~ 106 (145)
|-...|.-|...+++...-.+|+.++ +.|+ .|++.+|+.++++.++. +|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 44567777888899999999999999 9999 99999999999999877 77778
Q ss_pred hHHHHHHHHHh
Q 047113 107 VWGALLGACRI 117 (145)
Q Consensus 107 ~~~~li~~~~~ 117 (145)
+|+.++....+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88877776644
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00055 Score=50.47 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=101.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.++++..- +.++..-.++-..|.-.++++-|++.|+++.+ .|+. +..-|+.+--+|.-.+++|.+..-|.+.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 45666666442 23666777778888889999999999999998 8876 7888888888999999999999888887
Q ss_pred hhhcCcCcc--HHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 79 VHDFQLDLN--LEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 79 ~~~~~~~~~--~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.+ .--.|+ ..+|..|-...+.. .....++|.|----.+.|+++.|+.++.-.+.+.|+..
T Consensus 385 ls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred Hh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 73 222232 34444443222211 44667899988888899999999999999888888755
Q ss_pred CCc
Q 047113 140 AYY 142 (145)
Q Consensus 140 ~~~ 142 (145)
...
T Consensus 464 E~~ 466 (478)
T KOG1129|consen 464 EVT 466 (478)
T ss_pred ccc
Confidence 443
No 71
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.0017 Score=45.19 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHhhc-----cchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC---------------------
Q 047113 48 GKPNNVTFLSILFACSY-----SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------------- 101 (145)
Q Consensus 48 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------------------- 101 (145)
-..|-.+|..+++.+.+ .|.++.....++.|. +.|++-|..+|+.||+.+-+.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 45688899999999865 588999999999999 999999999999999999988
Q ss_pred -------------CCchhhHHHHHHHHHhccCh
Q 047113 102 -------------ETEPYVWGALLGACRIHHNV 121 (145)
Q Consensus 102 -------------~p~~~~~~~li~~~~~~g~~ 121 (145)
-||..++..|++.+++.+..
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 89999999999999987654
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.012 Score=41.96 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=84.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
|...-+.++....++|++.+|...|++... .-++|...||.+--+|.+.|+++.|..-|.+..+-.+=+|. ..-|.-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~-~~nNlg 175 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS-IANNLG 175 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch-hhhhHH
Confidence 555667788899999999999999999864 34668999999999999999999999999888832222222 222233
Q ss_pred HHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 95 VDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 95 i~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
+..+.+. .-|..+-..|..+....|++++|+.+...
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 3333333 33777888889999999999999988765
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=8.9e-05 Score=41.74 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=48.8
Q ss_pred hccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
.+.|++++|..+|+.+. .. .| .+...+-.+..+|.+.|++++|..+++++....|+++.++
T Consensus 2 l~~~~~~~A~~~~~~~l-~~--~p----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKAL-QR--NP----------------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHH-HH--TT----------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hhccCHHHHHHHHHHHH-HH--CC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 35789999999999998 22 33 2666777889999999999999999999999998765443
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.0014 Score=36.65 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 27 AIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.+.|++++|.++|+.... . .| |...+..+..++.+.|++++|..+++.+. ...|+-..|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~---~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ-R--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL---KQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH-H--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH---GGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcCHHHHHHH
Confidence 468999999999999865 3 35 67788889999999999999999999998 234553444433
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.37 E-value=0.0039 Score=48.85 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCC--CC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHC---SDG--KP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
.+++.|-..|-..|++++|.++|+..... .+. .+ ....++.+-..|-+.+.++.+.++|.+-. .
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~-~--------- 437 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK-D--------- 437 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH-H---------
Confidence 47999999999999999999999986431 222 22 35678999999999999999999998877 1
Q ss_pred HHHHHHHHhcCCCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 91 YGITVDLLATGETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 91 ~~~li~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+ ..++-..|++ .+|..|...|.+.|++++|.++.+.+..
T Consensus 438 --i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 --IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred --HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 12 4455556665 6899999999999999999999988764
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.36 E-value=0.002 Score=47.09 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 105 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
..+.|.+.-+....|++++|.+++.+..+.+|.
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 334444444444455555555554444444443
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.34 E-value=0.0058 Score=50.65 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=86.5
Q ss_pred chHHHHhccCCC---------CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCC-----------CCcH---HHHHHH
Q 047113 2 DDAERIFGGIID---------KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG-----------KPNN---VTFLSI 58 (145)
Q Consensus 2 ~~A~~~f~~m~~---------~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~-----------~p~~---~~~~~l 58 (145)
++|..++..+-. ++......|.-|+...+++++|..+++.+.. ..- .||. ..+..+
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE-QTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 467777776522 1223356778888888888888888888765 211 1221 123445
Q ss_pred HHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccC
Q 047113 59 LFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHN 120 (145)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~ 120 (145)
...+.-.|+.++|++.++.+. . .-| |......+.+.+... +.+..+......++-..|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~-~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLS-S--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 666777888888888888887 2 233 566666666666655 3344566677777777788
Q ss_pred hhHHHHHHccCCCCCCCCC
Q 047113 121 VKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~ 139 (145)
+++|..+.+.+.+..|+++
T Consensus 500 ~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 500 WHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhCCCch
Confidence 8888887777777766654
No 78
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.00084 Score=51.37 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC--CCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSD--GKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
......+++.+....+.+++..++...+. +. ...-..|..++|..|-+.|..+.+..++..=. .+|+=|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~------- 136 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFP------- 136 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCC-------
Confidence 34455556666666666666666666554 31 11122344566666666666666666666665 666655
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
|.+|+|.||+.+.+.|++..|.++.-.|..
T Consensus 137 ----------D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 137 ----------DNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred ----------ChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 566666666666777777766666665443
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00049 Score=56.52 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=93.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.++|...- +.|...=|-+--.++..|++++|..+|.+.++ ... -+..+|-.+-++|...|+|-.|.+.|+..
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888553 35777888888889999999999999999987 543 25568888999999999999999999998
Q ss_pred hhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.++..-. .+..+.+.|-+++-+.|++.+|.+.........|.++.
T Consensus 707 lkkf~~~-----------------~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 707 LKKFYKK-----------------NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHhccc-----------------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 8554422 25556666777888888888888887777777776553
No 80
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.0029 Score=41.10 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh----hcCcCccHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH----DFQLDLNLEHYG 92 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ 92 (145)
....++..+...|++++|..+.+.... .. +.|...|-.+|.++...|+...|.++|+.+.. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~-~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA-LD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-HS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456777788889999999999999876 33 33888999999999999999999999998763 468999877644
No 81
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.0017 Score=38.14 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCChHHHHHHHHHhHhhcCC-CCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhh
Q 047113 29 HGQEREALEAFYLVIHCSDG-KPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYV 107 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~ 107 (145)
.|++++|+..|+.+.. ..- .|+...+-.+-.++.+.|++++|..+++. . ..+ |+ +...
T Consensus 2 ~~~y~~Ai~~~~k~~~-~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~--~~----------------~~~~ 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE-LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLD--PS----------------NPDI 60 (84)
T ss_dssp TT-HHHHHHHHHHHHH-HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THH--HC----------------HHHH
T ss_pred CccHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCC--CC----------------CHHH
Confidence 5677788888877765 322 22344444467777778888888777777 3 111 11 1111
Q ss_pred HHHHHHHHHhccChhHHHHHHcc
Q 047113 108 WGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 108 ~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.-.+-.+|...|++++|...+++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 12235666777777777777653
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0042 Score=45.75 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=51.9
Q ss_pred chHHHHhccCCCCchhh---HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHH--HHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIIDKNVVI---WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVT--FLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~---~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
|||..+|-+|-.-|..| .=+|-+.|-+.|..|+|+++-.-+...-++..+... .--+-.-|...|.+|+|+.+|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 68888888886544444 446778888888888888888876551222222222 2234455677888888888888
Q ss_pred Hhh
Q 047113 77 IMV 79 (145)
Q Consensus 77 ~m~ 79 (145)
.+.
T Consensus 132 ~L~ 134 (389)
T COG2956 132 QLV 134 (389)
T ss_pred HHh
Confidence 887
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.30 E-value=0.0051 Score=50.08 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=66.7
Q ss_pred chHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
|+|.++++...+ | +...+-.+..++.+.+++++|+...++... ..| +....+.+-.++.+.|.+++|..+|++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 456666664432 3 344566666677777777777777766543 334 344556666666667777777777777
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. .. .|+ +...+..+-.++...|+.++|...|+...+
T Consensus 180 ~~-~~--~p~----------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 180 LS-RQ--HPE----------------FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HH-hc--CCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 21 111 234566666667777777777777776554
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.00061 Score=37.98 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..+.+.|++++|...|+... +.. |+ +...|..+-..+...|++++|...++++.+..|++|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l-~~~--P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQAL-KQD--PD----------------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHH-CCS--TT----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHC--CC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45678999999999999999 333 43 556777788899999999999999999999888764
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0071 Score=46.66 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=69.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
-+-+.|--..+..+|++++.+. ..+.| |....+-+-+.|-+.|+-.+|.+.+-.-- .-++.|..|-.=|..-|-
T Consensus 563 qianiye~led~aqaie~~~q~---~slip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHH
Confidence 3334444445555555555443 33444 56677777777888887777777655433 123334444333333332
Q ss_pred cC----------------CCchhhHHHHHHHH-HhccChhHHHHHHccCCCCCCC
Q 047113 100 TG----------------ETEPYVWGALLGAC-RIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 100 ~~----------------~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.. .|+..-|-.+|..| .+.|++.+|+.+++.+.+..|.
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 22 88999999998777 4579999999999887775553
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.0095 Score=39.67 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYG 92 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ 92 (145)
...|..+...+...|++++|...|+.... ..-.| ...++..+-..+...|++++|...++... . +.|+ ..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~--~~~~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-E--RNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCcCcHHHHH
Confidence 45788899999999999999999999865 32222 23578888899999999999999999988 3 2343 33333
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhccChh-------HHHHHHccCCCCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIHHNVK-------IGELVAKDPFHLDP 136 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~g~~~-------~a~~~~~~~~~~~~ 136 (145)
.+...|. .+-..+.+.|+++ +|..++++..+..|
T Consensus 111 ~la~i~~----------~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 111 NMAVICH----------YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHH----------HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3332222 1222333677766 44555555555555
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.21 E-value=0.0082 Score=41.96 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHhhcc--------chHHHHHHHHHHhh
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFACSYS--------GLIEEGIKVFDIMV 79 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~m~ 79 (145)
.|..+..++.+.|++++|...|+.+.+...-.|.. ..+..+-.++.+. |+.+.|...++.+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 55666667777777777777777765411111111 1222222223322 56666777776666
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.17 E-value=0.0071 Score=38.43 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=66.1
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+-..+.+.|++++|...|++... .+ +.+...+..+-..+...|+++.|...|+..
T Consensus 34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LD-PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777777653 34678899999999999999999999998765 33 336778888888999999999999999988
Q ss_pred hhhcCcCccHHH
Q 047113 79 VHDFQLDLNLEH 90 (145)
Q Consensus 79 ~~~~~~~~~~~~ 90 (145)
. + ..|+...
T Consensus 112 l-~--~~p~~~~ 120 (135)
T TIGR02552 112 I-E--ICGENPE 120 (135)
T ss_pred H-H--hccccch
Confidence 8 3 3454444
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.15 E-value=0.01 Score=41.79 Aligned_cols=117 Identities=12% Similarity=0.018 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVD 96 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~ 96 (145)
.--|-.+|.+.|++..|..-++...+ . .| +..+|.++-..|.+.|+.+.|.+-|+... .+.| +..+.|...-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~-~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE-H--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 44556677777788888777777655 3 34 45577777777778888877777777766 2344 2333333333
Q ss_pred HHhcC---------------CC----chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 97 LLATG---------------ET----EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 97 ~~~~~---------------~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
-+|.. .| -..+|..+.-+..+.|+.+.|...+++..+.+|+.+..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 33333 22 23467777777788899999999999988888876653
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.0048 Score=43.89 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=65.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
|..+ -.+=.++...|+-+.+..+...... .-.-|....+...+...+.|++..|...+++.. . ..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~--l~--------- 130 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R--LA--------- 130 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c--cC---------
Confidence 4444 4555677778888888877776432 122355566778999999999999999999998 2 22
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
++|+..|+.+--+|-+.|+++.|+.-+.+..++.|.++.
T Consensus 131 -------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~ 169 (257)
T COG5010 131 -------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS 169 (257)
T ss_pred -------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence 235555555555555555555555555555554444443
No 91
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.021 Score=37.88 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
..=.+-.-+.+.|++++|..+|+.... +.| +..-|-.+--+|-..|++++|...+.... . +.||
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~--L~~d--------- 101 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-Q--IKID--------- 101 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h--cCCC---------
Confidence 333445566789999999999999866 456 55566777778888999999999999888 3 3343
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
|...+=.+-.++...|+.+.|+..|+....
T Consensus 102 -------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 102 -------APQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred -------CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555556666777777777777776544
No 92
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.11 E-value=0.0031 Score=35.00 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=46.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+-..+.+.|++++|...|++..+ .. | +...+..+-.++.+.|++++|...|++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-QD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-CS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34678899999999999999876 43 5 67788999999999999999999999987
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.06 E-value=0.00077 Score=39.69 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=52.8
Q ss_pred chHHHHhccCCC--C---chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K---NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~---~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|..+|+.+.. | +...|-.+-.++.+.|++++|..+++. .. .+-. +....-.+-.++-+.|++++|..+++
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPS-NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHC-HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568888887743 3 344566689999999999999999988 33 2222 32333355788999999999999987
Q ss_pred H
Q 047113 77 I 77 (145)
Q Consensus 77 ~ 77 (145)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 5
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.04 E-value=0.0076 Score=49.11 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=84.9
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
++..+-.|-.+..+.|+.++|..+++...+ +.|| ......+...+.+.+.+++|....++.. . ..|+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~--~~p~------ 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-S--GGSS------ 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-h--cCCC------
Confidence 566788888889999999999999999855 6785 5577888899999999999999999888 3 2333
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+....+.+-.++...|++++|..+|+++....|+++..
T Consensus 153 ----------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 153 ----------SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG 190 (694)
T ss_pred ----------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH
Confidence 44555666788899999999999999998877765544
No 95
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0073 Score=33.83 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=54.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccc-hHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSG-LIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~ 79 (145)
+..+|..+-..+.+.|++++|+..|.+..+ . .| +...|..+-.++.+.| ++++|...++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-L--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-H--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 457899999999999999999999999876 4 35 6778899999999999 8999999998876
No 96
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.019 Score=41.69 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=77.9
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
|...|--|-.+|.+.|+++.|...|+.-.+..|=.|+.. -|...+-.-+......++..+|+++. ..+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~------ 225 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPA------ 225 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCc------
Confidence 788999999999999999999999999866344444433 33333433344445668999999988 34443
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
|..+-..|--++...|++.+|...|+.|.+..|.+
T Consensus 226 ----------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 226 ----------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred ----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 55555666788899999999999999999966543
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.97 E-value=0.011 Score=33.79 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=60.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|...|+... +.+...|..+...+...|++++|...|..... .. +.+..++..+...+...|+++.|...+...
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56777777653 23456788899999999999999999998765 33 335568888888999999999999999887
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 95 ~ 95 (100)
T cd00189 95 L 95 (100)
T ss_pred H
Confidence 6
No 98
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.034 Score=42.96 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=103.5
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
|+|...|++..+ .-...|..|-.-|..-.....|.+.|++..+ +-| |-..|=.+-.+|.-.+.-.-|.-.|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 678888886543 3466899999999999999999999999765 445 778888899999888888888888888
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. .+.| |...|.+|.++|.+. ..+...+..|-+.|-+.++.++|...+++-.+
T Consensus 424 A~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 424 AL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 87 4666 689999999999877 44557888899999999999999998887544
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.96 E-value=0.013 Score=44.00 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=68.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|++.- +.+...|..+-.++.+.|++++|+..+++... +.| +...|..+-.++...|+++.|...|+.
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46777777553 34677899999999999999999999999876 345 677888888999999999999999999
Q ss_pred hhhhcCcCccHHHHHHHH
Q 047113 78 MVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li 95 (145)
.. . +.|+-.....++
T Consensus 96 al-~--l~P~~~~~~~~l 110 (356)
T PLN03088 96 GA-S--LAPGDSRFTKLI 110 (356)
T ss_pred HH-H--hCCCCHHHHHHH
Confidence 98 3 455433333333
No 100
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0024 Score=35.90 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhcc-ChhHHHHHHc
Q 047113 51 NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHH-NVKIGELVAK 129 (145)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~ 129 (145)
+...|..+-..+.+.|+++.|...|++.. + +.|+ +...|..+-.+|...| ++++|+..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~--~~p~----------------~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-E--LDPN----------------NAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-H--HSTT----------------HHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--cCCC----------------CHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 46678888889999999999999999998 3 3343 5567777888899999 7999999998
Q ss_pred cCCCCCC
Q 047113 130 DPFHLDP 136 (145)
Q Consensus 130 ~~~~~~~ 136 (145)
+..+++|
T Consensus 63 ~al~l~P 69 (69)
T PF13414_consen 63 KALKLDP 69 (69)
T ss_dssp HHHHHST
T ss_pred HHHHcCc
Confidence 8776655
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.90 E-value=0.0053 Score=44.85 Aligned_cols=121 Identities=6% Similarity=-0.027 Sum_probs=84.9
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHH---HHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF---LSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
.+.......+..+.+.+|++.|.+.++.|++ . -.|.... .+.+........+..|..+|+++. + .+.+++.+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~-~-~~~~t~~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS-D-KFGSTPKL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH-C-CS--SHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-h-ccCCCHHH
Confidence 4566777888999999999999999999976 3 3444332 333444444457999999999997 3 45677777
Q ss_pred HHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccCh-hHHHHHHccCCCCCCCCC
Q 047113 91 YGITVDLLATG-----------------ETEPYVWGALLGACRIHHNV-KIGELVAKDPFHLDPKND 139 (145)
Q Consensus 91 ~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 139 (145)
.+.+.-+.... +.|..+...++-...-.|+. +.+.+.+..++...|+.|
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77666555544 44666777787777778887 778889999888877543
No 102
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.88 E-value=0.047 Score=41.71 Aligned_cols=116 Identities=9% Similarity=-0.039 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHH---HHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVT---FLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHY 91 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 91 (145)
+...+-.+...+.+.|++++|.+++++..+ ..||... .....-.....++.+.+...++...+...-.|+....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 777888999999999999999999999755 3455442 1222222344567778888887776333333322444
Q ss_pred HHHHHHHhcC------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 92 GITVDLLATG------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 92 ~~li~~~~~~------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.++...+.+. .|+...+..+...+...|+.++|.+++++...
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555543 68888888888999999999999999887543
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.82 E-value=0.073 Score=42.10 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=81.8
Q ss_pred CchhhHHHHHHHHHHcC-----ChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhcc--------chHHHHHHHHHHhh
Q 047113 14 KNVVIWSGMIASHAIHG-----QEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYS--------GLIEEGIKVFDIMV 79 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g-----~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~m~ 79 (145)
.|...|...+.|..... ..++|..+|++..+ ..|+ ...|..+..++... .+++.+.+......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 47788999998866533 37799999999866 4575 44555443333221 22334444444333
Q ss_pred hhcCcCccHHHHHHHHHH--HhcC--------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 80 HDFQLDLNLEHYGITVDL--LATG--------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~--~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
.......+...|.++.-. +... .|+...|..+-+.+...|+.++|.+.+++..+++|..|++|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 111122344555544322 2222 77888999999999999999999999999999999887654
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.80 E-value=0.044 Score=40.56 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=54.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhc
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 100 (145)
.+-..+...|++++|...+++..+ .. +.+...+..+-..+.+.|++++|...++... .. .|.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~-~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l-~~--~~~------------- 180 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALE-LN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWR-DT--WDC------------- 180 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh-hc--cCC-------------
Confidence 333455555666666666655543 21 1133344555555555666666665555554 11 110
Q ss_pred CCCch--hhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 101 GETEP--YVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 101 ~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.|+. ..|..+...+...|++++|..++++.....|
T Consensus 181 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 181 -SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred -CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 1222 2455677888999999999999998765444
No 105
>PLN02789 farnesyltranstransferase
Probab=96.78 E-value=0.033 Score=41.36 Aligned_cols=121 Identities=13% Similarity=0.025 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccc-hHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSG-LIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.+++.+-..+...++.++|+.++....+ +.| +...|+.--.+....| .++++...++.+. ..+ .-+...|+.-
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~n-pknyqaW~~R 112 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA-EDN-PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHC-CcchHHhHHH
Confidence 3577777888888999999999999876 456 3446665555556666 5788888888877 322 2234445422
Q ss_pred ---HHHHhc------------C----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 95 ---VDLLAT------------G----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 95 ---i~~~~~------------~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+..+.+ . +.+..+|+...-++...|+++++++.++++.+.+|.+.+.|
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 222211 1 55778999999999999999999999999999888776654
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.71 E-value=0.029 Score=40.45 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN----VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
..|+..+....+.|++++|...|+.+.. .-|+. ..+--+-.++-..|+++.|...|+.+..++.- +...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~-- 216 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKA-- 216 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--Ccch--
Confidence 3577777777778999999999999865 23432 35556667788999999999999999843221 1112
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
...+-.+...+...|+.++|..+++.+.+..|+..
T Consensus 217 ------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 217 ------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 22233345667788999999999998888777543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.68 E-value=0.0093 Score=41.09 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHH
Q 047113 30 GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWG 109 (145)
Q Consensus 30 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~ 109 (145)
++.+++...++...+ .. +.|...|..+-..+...|+++.|...+++.. + +.|+ +...+.
T Consensus 53 ~~~~~~i~~l~~~L~-~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~--l~P~----------------~~~~~~ 111 (198)
T PRK10370 53 QTPEAQLQALQDKIR-AN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL-Q--LRGE----------------NAELYA 111 (198)
T ss_pred hhHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCC----------------CHHHHH
Confidence 344555555555433 11 2366777777778888888888888887776 2 3332 555666
Q ss_pred HHHHHH-HhccC--hhHHHHHHccCCCCCCCCCCCccc
Q 047113 110 ALLGAC-RIHHN--VKIGELVAKDPFHLDPKNDAYYTS 144 (145)
Q Consensus 110 ~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 144 (145)
.+-.++ ...|+ .++|..++++..+.+|+++..+.+
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 666653 56676 599999999999999988766543
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0091 Score=42.85 Aligned_cols=108 Identities=12% Similarity=-0.049 Sum_probs=78.5
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG- 101 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~- 101 (145)
...|+..|++++|++..+.- -+......=+....+...+|.|+.-++.|. +- -+-.|.+-|.+++.+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq-~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQ-QI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc---chHHHHHHHHHHHHHHh
Confidence 34577899999999998762 133333333444677888999999999998 31 1345555555555544
Q ss_pred --------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 102 --------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 102 --------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+|...+-|...-++...|++++|..+.+......+++|.+
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 7888888888889999999999999999988777666544
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.66 E-value=0.0084 Score=49.96 Aligned_cols=119 Identities=12% Similarity=-0.030 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc------------C
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF------------Q 83 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------~ 83 (145)
..|..|-..|+..-++..|.++|+...+ +.| |........+.+++..+++.|..+.-....+. |
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 4788999999888899999999998755 444 77799999999999999999999843332111 1
Q ss_pred -cCccHHHHHHHHH----HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 84 -LDLNLEHYGITVD----LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 84 -~~~~~~~~~~li~----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
..|...-..-.|- ++.-.+.|...|..+..+|.+.|++..|+.+|.+...++|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 0122222221111 111115588899999999999999999999999999888854
No 110
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.06 Score=41.91 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=88.6
Q ss_pred chHHHHhc-cCC-CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 2 DDAERIFG-GII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 2 ~~A~~~f~-~m~-~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
..|..+|+ .|. +||...|++.|+-=.+-..++.|..+|..... +.|++.+|.--..---+.|++..+..+++...
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34667776 342 58888888888888888888888888888754 56888888877777777888877777777666
Q ss_pred hhcCcC-ccHHHHHHHHHHHhcC---------------------------------------------------------
Q 047113 80 HDFQLD-LNLEHYGITVDLLATG--------------------------------------------------------- 101 (145)
Q Consensus 80 ~~~~~~-~~~~~~~~li~~~~~~--------------------------------------------------------- 101 (145)
...|-+ .+...+.++..-=.++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 322211 1111222211100010
Q ss_pred ----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 102 ----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 102 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
+.|..+|--.+.--...|+.+...+++++.....|
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 45667888888888888999999999988766433
No 111
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.63 E-value=0.014 Score=45.75 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhh----cC-CCCcHHHH-HHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHC----SD-GKPNNVTF-LSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~----~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
.+...|-..|...|+++.|..++.+..+. .| ..|...+. +.+-..+...+.+++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 45666999999999999999999987551 12 24454433 4577788889999999999998872
Q ss_pred HHHHHHHHhcCCCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 91 YGITVDLLATGETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 91 ~~~li~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.....|++..|.+ .+++.|-..|.+.|++++|...+++..+
T Consensus 270 --i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 270 --IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred --HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 3444555554433 5777888899999999999998887655
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.0081 Score=34.56 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhh-cCCC---Cc-HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHC-SDGK---PN-NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~-~~~~---p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.+|+.+-..|.+.|++++|+..|++.... ..+. |+ ..+++.+-..+...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47999999999999999999999986531 1122 33 5688899999999999999999998765
No 113
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.00084 Score=34.62 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
+|..+-.+|.+.|++++|.+++++..+..|+++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 5777889999999999999999999999998876554
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.44 E-value=0.18 Score=35.21 Aligned_cols=125 Identities=12% Similarity=-0.070 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccH-HHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNL-EHYG 92 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ 92 (145)
....+-.+...+.+.|++++|...|++......-.|. ...+..+-.++-..|+++.|...++.+.....-.|.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4567888888999999999999999998651211121 2466778888999999999999999998333222221 1233
Q ss_pred HHHHHHhc---------------------C---CCch-hhHH-----------------HHHHHHHhccChhHHHHHHcc
Q 047113 93 ITVDLLAT---------------------G---ETEP-YVWG-----------------ALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 93 ~li~~~~~---------------------~---~p~~-~~~~-----------------~li~~~~~~g~~~~a~~~~~~ 130 (145)
.+..++.+ . .|+. ..+. .+-..|.+.|++++|...++.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33333321 1 3433 2221 234567788999999999999
Q ss_pred CCCCCCCCC
Q 047113 131 PFHLDPKND 139 (145)
Q Consensus 131 ~~~~~~~~~ 139 (145)
..+..|+.+
T Consensus 192 al~~~p~~~ 200 (235)
T TIGR03302 192 VVENYPDTP 200 (235)
T ss_pred HHHHCCCCc
Confidence 888766543
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.42 E-value=0.031 Score=37.09 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=67.4
Q ss_pred CchHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 1 MDDAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 1 ~~~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+++|+++|+.+.. | +..-|-.|-..+-+.|++++|+..|..... .+ +-|...+-.+-.++-..|+.+.|+..|+.
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3689999996642 3 566788899999999999999999999876 44 23678888888899999999999999998
Q ss_pred hhhhcCcCc
Q 047113 78 MVHDFQLDL 86 (145)
Q Consensus 78 m~~~~~~~~ 86 (145)
.....+-.|
T Consensus 129 Ai~~~~~~~ 137 (157)
T PRK15363 129 VVRICGEVS 137 (157)
T ss_pred HHHHhccCh
Confidence 884444333
No 116
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.069 Score=41.63 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=89.5
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+=|+...+ .++..|--+--+..|.+++++++..|.+.++ .++.....||..-......++++.|..-|+..
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 456666765433 3566777777888899999999999999864 56667889999999999999999999999987
Q ss_pred hhhcCcCcc-------H--------------HHHHHHHHHHhcC---CCch-hhHHHHHHHHHhccChhHHHHHHccC
Q 047113 79 VHDFQLDLN-------L--------------EHYGITVDLLATG---ETEP-YVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 79 ~~~~~~~~~-------~--------------~~~~~li~~~~~~---~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
. + ++|+ . .-++.-++.+.+. .|-. ..|-+|-..-...|+.++|.++|++.
T Consensus 489 i-~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 I-E--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred H-h--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7 2 2332 1 1122222333333 4433 46788888888889999999999863
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.40 E-value=0.13 Score=33.33 Aligned_cols=24 Identities=4% Similarity=-0.161 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhccChhHHHHHHcc
Q 047113 107 VWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.+...-+.|.+.|+.++|+..|+.
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445566888999999999998875
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.35 E-value=0.19 Score=38.00 Aligned_cols=112 Identities=15% Similarity=0.047 Sum_probs=84.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
++..=.+++.-+.+-|+.++|.++..+-.+ .+..|. -..+-.+.+.++...-+...+.-..+.+-.| ..+.+|
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tL 334 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTL 334 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHH
Confidence 566666788888899999999999988766 666665 2333455666776665665555554555555 667777
Q ss_pred HHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 95 VDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 95 i~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...|.+. .|+..+|+.+-+++.+.|+.++|.+..++...
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777776 89999999999999999999999999988544
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.30 E-value=0.08 Score=43.73 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+++.++-. .+...|-+|-..|-+.|+.++++..+-.... +.| |..-|..+-+...+.|++++|.-.|.+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344445444421 2344455555555555555555555443322 222 444555555555555555555555555
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.. +.. ++++..+---+.-|-+.|+...|...|.++....|
T Consensus 233 AI-~~~------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 233 AI-QAN------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HH-hcC------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 54 211 33444444445556666666666666666666544
No 120
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.30 E-value=0.073 Score=38.67 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.|...++-=.+.|+++.+..+.+++.+.-|
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 566666666666777777777766666444
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.038 Score=42.58 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN----VTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+...|+.+-.+|.+.|++++|+..|++-.+ +.|+. .+|..+--++...|++++|.+.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567899999999999999999999999755 56764 358999999999999999999999988
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.23 E-value=0.12 Score=40.07 Aligned_cols=101 Identities=20% Similarity=0.113 Sum_probs=78.7
Q ss_pred HHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHHHHHHhcC-
Q 047113 25 SHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGITVDLLATG- 101 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~- 101 (145)
.+.+.|.+++|+..++.+.. -.|| ..-+....+.+.+.++.++|.+.++.+. ...|+ ...+-.+.++|.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcC
Confidence 45578999999999999754 4565 4555777888999999999999999998 34665 55566666666665
Q ss_pred ----------------CCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 102 ----------------ETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 102 ----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
+-|...|..|-.+|...|+..++.....+.
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 446789999999999999998888766553
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.009 Score=44.31 Aligned_cols=127 Identities=9% Similarity=0.015 Sum_probs=75.9
Q ss_pred hHHHHhccCC--CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 3 DAERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 3 ~A~~~f~~m~--~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+|++.|+.-. .|-+.||-.|-.+|.+..+++.|+.+|.+-.. .++.|+....-+-..+-..++.+.+.++++...+
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 4666666432 35677888888888888888888888877532 2233444445566666677788888888887773
Q ss_pred hcCcCccHHHHHHHH-------------HHHhcC----CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 81 DFQLDLNLEHYGITV-------------DLLATG----ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 81 ~~~~~~~~~~~~~li-------------~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...+ ++..-.++. .-|.+. ..+..-|+.+--.|.-.+++|-++--|.+...
T Consensus 319 ~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 319 LHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred cCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 2211 111111111 111111 44556667777777777777777777777554
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.19 E-value=0.053 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=59.4
Q ss_pred chHHHHhccCCC--Cc----hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID--KN----VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~----~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+.|+.+.. |+ ...+..+..++.+.|++++|...|+.......-.| ....+..+..++.+.|+++.|...
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 467788877643 32 34677789999999999999999999865121111 245677777888999999999999
Q ss_pred HHHhh
Q 047113 75 FDIMV 79 (145)
Q Consensus 75 ~~~m~ 79 (145)
++.+.
T Consensus 99 ~~~~~ 103 (119)
T TIGR02795 99 LQQVI 103 (119)
T ss_pred HHHHH
Confidence 99998
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.18 E-value=0.0099 Score=33.64 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=50.3
Q ss_pred HHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 60 FACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..+.+.++++.|..+++.+. . +.|+ +...|...-..+...|++++|.+.+++..+..|+++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l-~--~~p~----------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL-E--LDPD----------------DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH-H--hCcc----------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 45788899999999999998 3 3333 556677778888999999999999999999888765
Q ss_pred C
Q 047113 140 A 140 (145)
Q Consensus 140 ~ 140 (145)
.
T Consensus 64 ~ 64 (73)
T PF13371_consen 64 D 64 (73)
T ss_pred H
Confidence 4
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.16 E-value=0.086 Score=41.70 Aligned_cols=139 Identities=12% Similarity=0.150 Sum_probs=83.8
Q ss_pred chHHHHhccCCC--Cchh-hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHH-HHHHHHhhc-----cchHHHHH
Q 047113 2 DDAERIFGGIID--KNVV-IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF-LSILFACSY-----SGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~-~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~-----~~~~~~a~ 72 (145)
++|.+.++.-.. .|.. ..-..-..+.+.|+.++|..+|+.+.. .+ |+...| ..+..+.+- ..+.+...
T Consensus 21 ~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 21 EEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RN--PDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC--CCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 456666665443 3544 455666788899999999999999977 55 665555 444444422 22455566
Q ss_pred HHHHHhhhhcC-------cCc---cHHHHHHHHHHHhcC-----------------------------------------
Q 047113 73 KVFDIMVHDFQ-------LDL---NLEHYGITVDLLATG----------------------------------------- 101 (145)
Q Consensus 73 ~~~~~m~~~~~-------~~~---~~~~~~~li~~~~~~----------------------------------------- 101 (145)
++++.+...+- +.. +..-|...++.|.+.
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG 177 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC
Confidence 66666542210 000 111222222222222
Q ss_pred -----------CCchhhH--HHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 102 -----------ETEPYVW--GALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 102 -----------~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
.|....| ..+-..|-..|++++|+..+++..+..|..+..|+
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~ 232 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYM 232 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 2444445 45567788899999999999999998887665553
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.048 Score=30.71 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=46.3
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-..|.+.+++++|.++++.+.. +.| +...+...-..+.+.|+++.|.+.++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3578899999999999999976 345 56677778888999999999999999998
No 128
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.12 E-value=0.067 Score=38.87 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
.+|-.+|...-|.+..++|..+|.+.++......+.....+.|.-+ ..++.+.|..+|+...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~------------- 67 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFP------------- 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC-------------
Confidence 5799999999999999999999999976223344555555555433 35667789999999884322
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
.+...|...++-....|+.+.|+.+|++....
T Consensus 68 ------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 68 ------SDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp ------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred ------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 25556777777888899999999999986653
No 129
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.018 Score=45.27 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=28.8
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+.|+.++.++--.|...|+++.|...|.+...+.|++.
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 44667777777778888888888888888777777663
No 130
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.96 E-value=0.13 Score=38.15 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=65.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHH---HHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLS---ILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGITV 95 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li 95 (145)
.....+...|++++|...+++..+ . .| |...++. ........+..+.+.+.+... ....|+ ......+.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~-~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a 121 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLD-D--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHH
Confidence 334456678899999998888765 2 34 4444442 222222244455555554431 122333 22222322
Q ss_pred HHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 96 DLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 96 ~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
..+... +.+...+..+-.++...|++++|...+++..+..|.
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 333322 445567888889999999999999999998876654
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.91 E-value=0.089 Score=42.69 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhh--cCc---CccHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHD--FQL---DLNLEH 90 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~ 90 (145)
..-|.-.|..|+..|+..+|..+..+-.+ -+||...|..+.+.-.....++.|.++++..-.+ ..+ .-+-..
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 34588889999999999999999887543 4689999999999999999998888888765422 110 001111
Q ss_pred HHHHHHHHhcC-------------------------------------CCc-hhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 91 YGITVDLLATG-------------------------------------ETE-PYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 91 ~~~li~~~~~~-------------------------------------~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
|.....-+-+. .|| ..+||++-.+|.+.|+..+|...+.+..
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 22222111111 554 5799999999999999999999999988
Q ss_pred CCC
Q 047113 133 HLD 135 (145)
Q Consensus 133 ~~~ 135 (145)
+.+
T Consensus 581 Kcn 583 (777)
T KOG1128|consen 581 KCN 583 (777)
T ss_pred hcC
Confidence 755
No 132
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.076 Score=41.89 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.+|+.|-.+|.+.+++++|+..|+.-.. ..| |..+++++--.+...|+++.|...|.+.. .+.|+-.+-..++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELL 529 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHH
Confidence 4699999999999999999999998754 334 88899999999999999999999999888 7888877777776
Q ss_pred HHHhcC
Q 047113 96 DLLATG 101 (145)
Q Consensus 96 ~~~~~~ 101 (145)
..+...
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 655443
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.047 Score=39.33 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred chHHHHhccCCCC-chhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIIDK-NVVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~~-~~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
|-|++.++.|..- +-.|.+-|-.++.+ .+.+.+|..+|++|. ....|+..+.|-..-+|...|++++|+.+++
T Consensus 154 d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 154 DLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 4466666666653 45566655555543 557999999999995 3488999999999999999999999999999
Q ss_pred Hhhhh
Q 047113 77 IMVHD 81 (145)
Q Consensus 77 ~m~~~ 81 (145)
....+
T Consensus 232 eaL~k 236 (299)
T KOG3081|consen 232 EALDK 236 (299)
T ss_pred HHHhc
Confidence 99843
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.80 E-value=0.056 Score=41.27 Aligned_cols=86 Identities=9% Similarity=0.048 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHH
Q 047113 53 VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGAC 115 (145)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~ 115 (145)
.-...+++.+...+.++.|..+|+++. ... |++ ...++..|... +.+......-.+-+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~-~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLR-ERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHH-hcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344566777888999999999999998 332 553 33455555433 33555555556668
Q ss_pred HhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 116 RIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 116 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
.+.|+.+.|+.+.+++.+..|++-.+|.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~ 272 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWY 272 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence 8999999999999999999887765543
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.77 E-value=0.099 Score=43.01 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=48.0
Q ss_pred hHHHHhccCCCCchhh--HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGIIDKNVVI--WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~~~~~~~--~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|..+++.++.+++.+ |.-+-+-|+..|+++.|.++|-+- + -|+-.|+.|+++|.|+.|..+-.+..
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccHHHHHHHHHHhc
Confidence 5677777777655543 777778888888888888888652 2 24556777888888888777766554
No 136
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.70 E-value=0.048 Score=42.94 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=69.3
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
+|..+.+.|-..|--.|.+++|..+|+.... ++| |...||-+--..+-...-++|...+.+.+ .++|+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~----- 496 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPG----- 496 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCC-----
Confidence 4667788888888888888888888888754 567 56688888888888888888888888877 35554
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
| +.++-.|-=.|...|.+++|...|-....
T Consensus 497 -----y------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 497 -----Y------VRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred -----e------eeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 1 12333334456667777777766665444
No 137
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.68 E-value=0.11 Score=31.97 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCChH--HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQER--EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 19 ~~~li~a~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
|++=-..|....+.| +..+-++.+-. .++.|+.....+.+.+|.+-+++..|.++|+-++.+.| +....|..+++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 333334444444333 66777777777 88999999999999999999999999999999985544 32337777665
No 138
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.66 E-value=0.09 Score=32.01 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
|.=++.+-++.+-. .++.|+.....+.+++|.+-+++..|.++|+-.+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 33466777777777 88999999999999999999999999999998873333 25557777765
No 139
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.63 E-value=0.24 Score=41.13 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 98 (145)
|--+-.++.+.|.+.+|+.+|..+.. ...--+...|-.+-.++...|.++.|.+.++... ...|+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl---~~~p~----------- 481 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL---ILAPD----------- 481 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH---hcCCC-----------
Confidence 44555666666666666666666554 3222244455556666666666666666666665 12222
Q ss_pred hcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 99 ATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 99 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
+...-.+|-..+-+.|+.|+|.++...+...+
T Consensus 482 -----~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 482 -----NLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred -----chhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 33344456677889999999999999877433
No 140
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.087 Score=38.99 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=53.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.+++|--++.-| ++++++.+...-.+ .|+=||..+++.+|+.+.+.+++..|.++.-.|.
T Consensus 103 ~~~~~irlllky----~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 103 TIHTWIRLLLKY----DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cHHHHHHHHHcc----ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 456777777777 89999999999989 9999999999999999999999999888887777
No 141
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.61 E-value=0.29 Score=38.17 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=79.7
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
.|..+.+-|-+.|-+.|+-.+|..++-+-- .=++.|..+.-=+-.-|....-++.+...|++.. =++|+..-|-.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwql 664 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQL 664 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHH
Confidence 477889999999999999999988865531 2244477777777777888888888988888776 47899999998
Q ss_pred HHHHHhcC------------------CCchhhHHHHHHHHHhccC
Q 047113 94 TVDLLATG------------------ETEPYVWGALLGACRIHHN 120 (145)
Q Consensus 94 li~~~~~~------------------~p~~~~~~~li~~~~~~g~ 120 (145)
+|-.|.+. +.|..+...|+..+...|-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 88777765 5577888888888888775
No 142
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.13 Score=40.19 Aligned_cols=114 Identities=16% Similarity=0.067 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGITVD 96 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~ 96 (145)
|--+-.+|.+..+.++....|+.... +-| |..+|-.--....-.++++.|..=|++.+ .+.|+ ...|--+--
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai---~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI---SLDPENAYAYIQLCC 436 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh---hcChhhhHHHHHHHH
Confidence 77777889999999999999988754 444 56666666666667788888888888877 34442 333332222
Q ss_pred HHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 97 LLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 97 ~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+..|. -| -..+||..-..+..++++++|.+-+++..+++|+.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 22222 44 45799999999999999999999999999988873
No 143
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.4 Score=35.73 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=64.2
Q ss_pred chHHHHhccCCC-C--chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH----HHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-K--NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV----TFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-~--~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~ 74 (145)
|.|+.+|..+.. + -...-.-|+..|-+..+|++|+++=..... .+-++..+ -|.-+-.......++++|..+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 455555554433 2 223444555556666666666665555544 33222111 223333333344555555555
Q ss_pred HHHhhhhcC------------cCccHHHHHHHHHHHhcC---CCch--hhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 75 FDIMVHDFQ------------LDLNLEHYGITVDLLATG---ETEP--YVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 75 ~~~m~~~~~------------~~~~~~~~~~li~~~~~~---~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
+++.. ..+ +...-..|-.-|.++.+. .|+. .+-..|..+|...|+.++.+....++.+..
T Consensus 203 l~kAl-qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKAL-QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHH-hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 55544 111 001111122222222222 4443 467778888888888888888877766543
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.36 Score=34.70 Aligned_cols=119 Identities=10% Similarity=0.145 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH---HHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG---ITV 95 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---~li 95 (145)
|--++-|....|+.+.|..+++++..+..-.+-+.-+-.++ +--.|+++.|.++++.+. ... +.|.++|- +++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHH
Confidence 44455556677899999999999875232222333333333 456789999999999999 333 33566654 556
Q ss_pred HHHhcC--------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 96 DLLATG--------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 96 ~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
.+-++. .-|...|.-+-..|...|++++|--.++++.-+.|.++-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~ 190 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY 190 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH
Confidence 666665 6688999999999999999999999999988888866543
No 145
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.48 E-value=0.035 Score=27.10 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHh
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLV 42 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m 42 (145)
+|+.|-..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677778888888888888888773
No 146
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.39 E-value=0.59 Score=35.49 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
..|...+.+++.++.-.|++++|.+..++|.+..|+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 446667888999999999999999999998887654
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.39 E-value=0.17 Score=42.53 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=80.6
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
.+...|..|+.++-..+++++|.++.+.-.. ..|+.. .|-.+-..+-+.++.+.+..+ .+. +..+...-|
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~~~~~~- 99 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFSQNLKW- 99 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhcccccch-
Confidence 4677899999999999999999999996543 455543 222222256777777776666 333 222222223
Q ss_pred HHHHHHhcC----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 93 ITVDLLATG----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 93 ~li~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
.++.-++++ ..+....-++..+|-+.|+.+++..+++++.+.+|+++..
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~a 152 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEI 152 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHH
Confidence 222223323 3344578888999999999999999999999998877643
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.34 E-value=0.17 Score=40.06 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
+...|.++-......|++++|...|++... +.|+...|..+-+.+...|+.++|.+.+++.. .+.|...|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCch
Confidence 456788886667778999999999999877 44888999999999999999999999999887 34454334
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.34 E-value=0.098 Score=29.91 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 52 NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETE-PYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
..+++.+-..+...|++++|...|++........++ ..|+ ..+++.+-..|...|++++|++.+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-------------DHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 347889999999999999999999998822111111 0122 45678889999999999999999886
Q ss_pred CC
Q 047113 131 PF 132 (145)
Q Consensus 131 ~~ 132 (145)
..
T Consensus 72 al 73 (78)
T PF13424_consen 72 AL 73 (78)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 150
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=0.52 Score=37.01 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=60.7
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
.|..+|+... .+++.-|---+..=.++..+..|..+|++... +-| |...|- -+..--..|++..|.++|++
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyK-Y~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYK-YIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHH-HHHHHHHhcccHHHHHHHHH
Confidence 4666666443 24455555555555566666666666665433 222 222222 22222334555555665555
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
-. ..+|+...|.+.|+.=.+. .|++.+|--..+==.++|++..|+.+++..
T Consensus 167 W~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 167 WM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44 3455555555555432222 455555544444444555555555555543
No 151
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.26 E-value=0.14 Score=37.51 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCCcHHHHHHHHHHhhc-----cchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC--------------------
Q 047113 47 DGKPNNVTFLSILFACSY-----SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------------- 101 (145)
Q Consensus 47 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------------------- 101 (145)
+-+.|-.+|-..+..+.+ .+.++.--..++.|. ++|++-|..+|+.||+.+-+.
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 345688889888888755 478888889999999 999999999999999999888
Q ss_pred --------------CCchhhHHHHHHHHHhccCh
Q 047113 102 --------------ETEPYVWGALLGACRIHHNV 121 (145)
Q Consensus 102 --------------~p~~~~~~~li~~~~~~g~~ 121 (145)
-||-.+--.|++++++.|..
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 78888889999999997754
No 152
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.24 E-value=0.13 Score=32.88 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=48.1
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
|+...-.+++.+|+.+|++..|+++.+...+..+++.+..+|..|+.-+-....
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999987669988899999999988765554
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.23 E-value=0.43 Score=30.23 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
-.++-..|+.++|..+|++-.. .|+... ...+-.+-+++...|+.++|..+++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566778999999999999988 887765 44667788888999999999999998883
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.20 E-value=0.69 Score=35.14 Aligned_cols=127 Identities=9% Similarity=0.028 Sum_probs=77.2
Q ss_pred cCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHhhcc-----------------
Q 047113 10 GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-------VTFLSILFACSYS----------------- 65 (145)
Q Consensus 10 ~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~----------------- 65 (145)
+|.++++..-.....+|.+.|++.+...+...|.+ .|+--|. .+|+.+++-+...
T Consensus 181 ~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 181 EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 44556777888888888888888888888888877 6654443 2455555555443
Q ss_pred -----------------chHHHHHHHHHHhhhhcCcCccHHHHHH---------HHHHHhcC----CCchhhHHHHHHHH
Q 047113 66 -----------------GLIEEGIKVFDIMVHDFQLDLNLEHYGI---------TVDLLATG----ETEPYVWGALLGAC 115 (145)
Q Consensus 66 -----------------~~~~~a~~~~~~m~~~~~~~~~~~~~~~---------li~~~~~~----~p~~~~~~~li~~~ 115 (145)
|+.+.|.++..+-. +.+..|+...+-. +++..-+. +.+.-.+.+|-.-|
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 34445555555444 4444444111100 00000000 33446778888889
Q ss_pred HhccChhHHHHHHccCCCCCCCC
Q 047113 116 RIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 116 ~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.+++.+.+|...|+...+..|+.
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCh
Confidence 99999999999998766666643
No 155
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.14 E-value=0.47 Score=38.45 Aligned_cols=114 Identities=12% Similarity=0.121 Sum_probs=88.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC-----cCccHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ-----LDLNLE 89 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~ 89 (145)
...+|.-.|.-...+|.++-+.++|++-.+ +.| ..-+--|...++.+++++|.+-+.....+.. ...+..
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHh---cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 345688888888889999999999998754 344 4466777888999999999888887763221 245777
Q ss_pred HHHHHHHHHhcC-------------------CC--chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVDLLATG-------------------ET--EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~~~~~~-------------------~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.|.-+-+..++. -+ -..-|++|-+-|.+.|.+++|..++++...
T Consensus 212 lw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888887777777 33 346899999999999999999999998543
No 156
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.72 Score=39.49 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|+.+-.|--+.|+..+|.+-|-.. -|+..|.-+++.+.+.|.|+.-...+.... +..-+|.+. +.||
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHH
Confidence 457999999999999999999888542 367889999999999999999888887776 444566554 4688
Q ss_pred HHHhcC-----------CCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 96 DLLATG-----------ETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 96 ~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
-+|++. .|+..-.-.+-+-|...|.++.|.-++...
T Consensus 1174 ~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 888887 666666667777777777777777666543
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.98 E-value=0.084 Score=34.25 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=53.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH--HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNN--VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 98 (145)
.+-..+...|++++|...|+.... ..-.|+. ...-.+-..+...|+++.|...++... ...+.| ..+....++|
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~--~~~~~~Gdi~ 128 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKA--LAAELLGDIY 128 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHH--HHHHHHHHHH
Confidence 344778889999999999999877 5523322 234456677888999999999998765 444443 3555666666
Q ss_pred hcC
Q 047113 99 ATG 101 (145)
Q Consensus 99 ~~~ 101 (145)
.+.
T Consensus 129 ~~~ 131 (145)
T PF09976_consen 129 LAQ 131 (145)
T ss_pred HHC
Confidence 654
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.87 E-value=0.26 Score=41.44 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
..+-.|..+|-+.|+.++|..+|+++.+ .. +-|+...|.+-..++.. ++++|.+++.+... .-+ +..-|+.+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-~~i--~~kq~~~~~e 190 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-RFI--KKKQYVGIEE 190 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-HHH--hhhcchHHHH
Confidence 3455677777788999999999999988 66 33788999999999999 99999999988873 211 1222333322
Q ss_pred H---HhcCCC---------------------chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 97 L---LATGET---------------------EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 97 ~---~~~~~p---------------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
. ++.+.| -..++--+-..|....+++++..+++.+.+.+|++..
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 2 222222 2233444446778888999999999999998887643
No 159
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.68 E-value=0.69 Score=33.73 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhh----hcCcCccHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVH----DFQLDLNLEH 90 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~ 90 (145)
+.++..++.++..-|+++.+...+++... ..| |...|-.+|.++.+.|....|+..++.+.+ +-|++|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 34567788888999999999999999876 344 899999999999999999999999998874 4689999999
Q ss_pred HHHHHHHHhcC
Q 047113 91 YGITVDLLATG 101 (145)
Q Consensus 91 ~~~li~~~~~~ 101 (145)
......+..+.
T Consensus 230 ~~~y~~~~~~~ 240 (280)
T COG3629 230 RALYEEILRQD 240 (280)
T ss_pred HHHHHHHhccc
Confidence 99888885554
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.62 E-value=1.1 Score=34.44 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=85.8
Q ss_pred chHHHHhccCCC-Cch--hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID-KNV--VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~-~~~--~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|++-|+.|-. |-. --...|.-.--+.|+.+-|.+.-... .+.-|... .+...+...|..|+|+.+.++.+.
T Consensus 137 ~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~A---a~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 137 EDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERA---AEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH---HhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 467777777754 221 22445555556677777776666554 33455433 667888999999999999999988
Q ss_pred hhhhcCcCccHHHH--HHHHHHHhcC-------------------CCchh-hHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 78 MVHDFQLDLNLEHY--GITVDLLATG-------------------ETEPY-VWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 78 m~~~~~~~~~~~~~--~~li~~~~~~-------------------~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
-....-+++++.-- ..|+.+=+.. .||.+ .--..-+++.+.|++.++-.+++.+.+.+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 77555566664432 3444333322 55554 23334578889999999999999888877
Q ss_pred C
Q 047113 136 P 136 (145)
Q Consensus 136 ~ 136 (145)
|
T Consensus 294 P 294 (531)
T COG3898 294 P 294 (531)
T ss_pred C
Confidence 6
No 161
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.52 E-value=1.2 Score=31.71 Aligned_cols=128 Identities=11% Similarity=-0.040 Sum_probs=80.8
Q ss_pred hHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 3 DAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 3 ~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
.|++-+++.-+ | +..+|..+-..|.+.|..+.|.+-|+.... +.| +....|.----.|..|.+++|.+-|++.
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 45556664433 3 455888899999999999999999988644 456 4445566555568888999999888888
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..+-....-..+|..+.-+-.+. .| ...+.-.+-.-..+.|++-.|...+++...
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 73322222244555554433333 23 224555566666667777777666665443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.50 E-value=0.54 Score=31.34 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=46.0
Q ss_pred chHHHHhccCCC--Cc----hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccch
Q 047113 2 DDAERIFGGIID--KN----VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGL 67 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~----~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~ 67 (145)
++|...|++.-. |+ ...|..+...+.+.|++++|...+.+... ..| +...+..+...+...|+
T Consensus 52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCC
Confidence 567777775531 22 35799999999999999999999999765 345 45566666667776665
No 163
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.32 Score=37.42 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=27.6
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
+.+..+|..|+..|-..|++.+|..+.+...+.-|
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999877766444333
No 164
>PLN02789 farnesyltranstransferase
Probab=94.40 E-value=1.2 Score=33.24 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHcCCh--HHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQE--REALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~--~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
+..+|+---..+.+.|+. ++++.+++.+.+ .. +-|...|+..--++...|.++++.+.++++. +.+.. |...|+
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~-~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~-N~sAW~ 180 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILS-LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDVR-NNSAWN 180 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCC-chhHHH
Confidence 444566554444455542 556666666654 22 1255566766666777777777777777776 33211 233333
Q ss_pred HHHHHH-------------------h-cC----CCchhhHHHHHHHHHhc----cChhHHHHHHccCCCCCCC
Q 047113 93 ITVDLL-------------------A-TG----ETEPYVWGALLGACRIH----HNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 93 ~li~~~-------------------~-~~----~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~ 137 (145)
...-++ . +. +.|...|+.+-..+... ++..+|...+.+....+|.
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 222111 1 00 34556777777777663 3345566666665554443
No 165
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.39 E-value=1 Score=36.77 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=89.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.+.-|-.|-..=-+.|..-+|..+|+.-+. .+ +-|..-|-..|..-.+.|+.+.|..+..+..+ .++.+...|.--
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarl-kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARL-KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHh-cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 445677777777788888899999988765 33 33788899999999999999999988887762 344445555443
Q ss_pred -------------HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 95 -------------VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 95 -------------i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
++++-+|..|.++.-++-..+-...++++|+..|.+..+.+|+....+
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 455555566777777777777777788888888888777777655433
No 166
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.22 Score=41.76 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=93.0
Q ss_pred CchHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 1 MDDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 1 ~~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+++|..+|...++ .+..+|=.+-+.|...|++..|+++|....+...-+-+....+.|-.++-+.|.+.++.+....
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4689999998876 3567899999999999999999999999655366555777889999999999999998887776
Q ss_pred hhhhcCcCccHHHHHHHHHH--HhcC---CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDL--LATG---ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~--~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.. +-...-..+-||..+-. .+.. .|- .++=..-...+..+.|.++|.+|....+
T Consensus 742 a~-~~~p~~~~v~FN~a~v~kkla~s~lr~~k----~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 742 AR-HLAPSNTSVKFNLALVLKKLAESILRLEK----RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HH-HhCCccchHHhHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66 33323234556644432 2222 111 2222333445677999999999887554
No 167
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.18 E-value=0.15 Score=32.91 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=55.5
Q ss_pred hhhHHHHHH---HHHHcCChHHHHHHHHHhHhhcC--CCCcHH--HHHH----------------HHHHhhccchHHHHH
Q 047113 16 VVIWSGMIA---SHAIHGQEREALEAFYLVIHCSD--GKPNNV--TFLS----------------ILFACSYSGLIEEGI 72 (145)
Q Consensus 16 ~~~~~~li~---a~~~~g~~~~A~~~~~~m~~~~~--~~p~~~--~~~~----------------ll~~~~~~~~~~~a~ 72 (145)
+..|-.++. ...+.|+.+.+...+.++....+ +-|+.. .|.. ++..+...|+++.+.
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 344555533 23556788888877777643121 222211 2222 233333455555555
Q ss_pred HHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 73 KVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+.+.+. ... +-|-..|..+|.+|.+.|+..+|.+.++++.+
T Consensus 83 ~~~~~~l---~~d----------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRAL---ALD----------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHH---HHS----------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHH---hcC----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555544 112 34667899999999999999999999998765
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.69 Score=35.09 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH-HHHH
Q 047113 20 SGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT-VDLL 98 (145)
Q Consensus 20 ~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-i~~~ 98 (145)
.++-+++.-..++++.+-.+..++. .=.--|..-| .+-.+.+..|++.+|+++|-.+. ...+. |-.+|-++ ..+|
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCy 438 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCY 438 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHH
Confidence 3455555556677777777776654 3222233333 35567777888888888887776 32222 44555544 3555
Q ss_pred hcC---------------CCchhhHHHHH-HHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 99 ATG---------------ETEPYVWGALL-GACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 99 ~~~---------------~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
.++ +.+..+.-.+| +.|-+.|.+--|-..|+.+..++| +|..
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEn 496 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPEN 496 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Cccc
Confidence 555 22334444444 678888999999999999998888 4443
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.99 E-value=0.2 Score=40.83 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.+|=.+-.+.-+.++++.|...|..... +.| +...||.+-.++.+.++-.+|...+.+.. +.+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn------------ 583 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN------------ 583 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC------------
Confidence 3444455555555566666666655432 344 34466666666666666666666655555 333
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..++..|-..+..-.+.|.+++|.+.+.++..
T Consensus 584 ------~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 584 ------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 23556677778888889999999999988776
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.95 E-value=0.53 Score=34.13 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred hHHHHhccCCCCch--hhHHHHHHHHHHc-CChHHHHHHHHHhHh---hcCCCC-c-HHHHHHHHHHhhccchHHHHHHH
Q 047113 3 DAERIFGGIIDKNV--VIWSGMIASHAIH-GQEREALEAFYLVIH---CSDGKP-N-NVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 3 ~A~~~f~~m~~~~~--~~~~~li~a~~~~-g~~~~A~~~~~~m~~---~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
+|..+|...-.++. .++..+-..|-.. |++++|++.|.+... ..| .+ . ...+.-+...+.+.|++++|..+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44444444444332 3566666666666 777888777777432 023 22 1 33556777778888899999999
Q ss_pred HHHhh
Q 047113 75 FDIMV 79 (145)
Q Consensus 75 ~~~m~ 79 (145)
|++..
T Consensus 178 ~e~~~ 182 (282)
T PF14938_consen 178 YEEVA 182 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98887
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.92 E-value=0.033 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.+|..+-..|...|++++|...|++..+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888899999999999999999999888875
No 172
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.77 E-value=0.056 Score=25.51 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
..|..+-..+...|++++|++.+++..++.|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777889999999999999999998888853
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.25 Score=38.81 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=70.9
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGET 103 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p 103 (145)
++.+..|+++.|..+|-+-.. .. ++|-+-|+.-..+++..|+++.|..=-.. ...+.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~-l~-p~nhvlySnrsaa~a~~~~~~~al~da~k---~~~l~p~---------------- 68 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM-LS-PTNHVLYSNRSAAYASLGSYEKALKDATK---TRRLNPD---------------- 68 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc-cC-CCccchhcchHHHHHHHhhHHHHHHHHHH---HHhcCCc----------------
Confidence 456788999999999998765 33 34888999999999999999877663333 3345553
Q ss_pred ch-hhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 104 EP-YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 104 ~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+ .-|+=.-.+....|++++|..-|.+-.+.+|++...
T Consensus 69 -w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L 106 (539)
T KOG0548|consen 69 -WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQL 106 (539)
T ss_pred -hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHH
Confidence 3 245556677778889999999998888888776543
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.58 E-value=1 Score=37.72 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=58.5
Q ss_pred hHHHHHHHH--HHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASH--AIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.|...+.|+ .|.|+.++|..+++.... .+.. |..|..++-..|.+.++.+++..++++.. +..|+...-..+.
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~eell~~lF 117 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPSEELLYHLF 117 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCcHHHHHHHH
Confidence 355555554 478899999988877644 3322 77888889999999999999999999887 4466677777777
Q ss_pred HHHhcC
Q 047113 96 DLLATG 101 (145)
Q Consensus 96 ~~~~~~ 101 (145)
.+|+|.
T Consensus 118 mayvR~ 123 (932)
T KOG2053|consen 118 MAYVRE 123 (932)
T ss_pred HHHHHH
Confidence 777766
No 175
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.58 E-value=1.5 Score=35.66 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch----------------------HHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL----------------------IEEGIKVF 75 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~ 75 (145)
-|++|-+-|.+.|++++|..+|.+-.. . .....-|+.+.++|++... ++....-|
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~-~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQ-T--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH-h--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 599999999999999999999998433 1 2345556666666655321 12222222
Q ss_pred HHhhhhcCc---------Cc-cHHHHHHHHHHHhcC---------------CC------chhhHHHHHHHHHhccChhHH
Q 047113 76 DIMVHDFQL---------DL-NLEHYGITVDLLATG---------------ET------EPYVWGALLGACRIHHNVKIG 124 (145)
Q Consensus 76 ~~m~~~~~~---------~~-~~~~~~~li~~~~~~---------------~p------~~~~~~~li~~~~~~g~~~~a 124 (145)
+.+..+..+ .| ++.+|..-++.|-.. .| -...|..+-+-|-++|+++.|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 322211111 12 344454444433332 11 124688888999999999999
Q ss_pred HHHHccCCCCC
Q 047113 125 ELVAKDPFHLD 135 (145)
Q Consensus 125 ~~~~~~~~~~~ 135 (145)
+.+|++..+++
T Consensus 407 Rvifeka~~V~ 417 (835)
T KOG2047|consen 407 RVIFEKATKVP 417 (835)
T ss_pred HHHHHHhhcCC
Confidence 99999877744
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.57 E-value=0.54 Score=37.32 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGA 110 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~ 110 (145)
.+.+..++|.++..+.+.++|....+.|--.|=-.|.|++|...|+... .+.|+ |...||-
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pn----------------d~~lWNR 469 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPN----------------DYLLWNR 469 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCc----------------hHHHHHH
Confidence 3556778888877657766677777777667888899999999998888 34554 7778999
Q ss_pred HHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 111 LLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 111 li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
|-...+...+-++|...+.+..++.|.
T Consensus 470 LGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 470 LGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred hhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998884
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.52 E-value=0.54 Score=31.14 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=51.5
Q ss_pred chHHHHhccCC--CC----chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhh-------ccch
Q 047113 2 DDAERIFGGII--DK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACS-------YSGL 67 (145)
Q Consensus 2 ~~A~~~f~~m~--~~----~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~-------~~~~ 67 (145)
++|...|+... .+ ...+|..+-..+...|++++|...++.... . .| ...+++.+...+. ..|+
T Consensus 52 ~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-~--~~~~~~~~~~la~i~~~~~~~~~~~g~ 128 (168)
T CHL00033 52 AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-R--NPFLPQALNNMAVICHYRGEQAIEQGD 128 (168)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CcCcHHHHHHHHHHHHHhhHHHHHccc
Confidence 46667666542 12 235899999999999999999999999765 2 34 4556777777777 7777
Q ss_pred HHHHHHHHHH
Q 047113 68 IEEGIKVFDI 77 (145)
Q Consensus 68 ~~~a~~~~~~ 77 (145)
++.|...+++
T Consensus 129 ~~~A~~~~~~ 138 (168)
T CHL00033 129 SEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHH
Confidence 7755555543
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=93.50 E-value=1.3 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=40.8
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.-+.+.|++++|..+|+.+.. .+.- |..-|..|-.+|-..++++.|...|....
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~-~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCI-YDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999876 4422 45555666666677889999999998776
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.41 E-value=1.5 Score=32.26 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=73.8
Q ss_pred hHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 3 DAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 3 ~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
+|...|.+- .+.|.+=|..=-.||++.|.++.|.+--+.... +-|. ..+|..|-.++...|.++.|.+.|++.
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 455555532 345777888888999999999999987776544 4564 679999999999999999999999988
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
. .++|+-.+|-.=++...+.
T Consensus 176 L---eldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 176 L---ELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred h---ccCCCcHHHHHHHHHHHHH
Confidence 8 6899888888777766655
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.84 Score=33.26 Aligned_cols=119 Identities=12% Similarity=-0.047 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
.-++++...-..|.+.-...++++.++ ..-+-++.--..+...-.+.|+.+.|...|++.. +..-..|..+++.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve-k~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE-KVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhhhhccchhHHHHh
Confidence 345677777778888888999998887 5545577777888888999999999999999777 33323444444444322
Q ss_pred HhcC----------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 98 LATG----------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 98 ~~~~----------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
-.+. ..|...-|+---...-.|+..+|....+.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1111 2233434433333344688899999999888877743
No 181
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.09 E-value=2.9 Score=33.34 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
+|.-+-..|-..|++++|++..+...+ ..|+ +.-|..--..+.+.|++++|.+..+... .- .+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~L--D~---------- 259 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR-EL--DL---------- 259 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hC--Ch----------
Confidence 345556777899999999999998766 3565 6688888999999999999999998887 22 21
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
-|.+.=+-..+.+-+.|++++|..++....+-+
T Consensus 260 ------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 260 ------ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 266666777888899999999999998876633
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.05 E-value=0.28 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
.|..+-.+|.+.|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777888888888888888888765
No 183
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.95 E-value=0.15 Score=24.81 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+|+.|-..|.+.|++++|..++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999998443
No 184
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.87 E-value=0.31 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
.+|..+-.++...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3677888888888888888888888654
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.81 E-value=1 Score=33.57 Aligned_cols=103 Identities=13% Similarity=-0.108 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
+-+..|.-+...|+...|.++-.+.+ .||-.-|-..+.++++.++|++-..+-.. + + ++..|-.++++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-K-----sPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-K-----SPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-C-----CCCChHHHHHH
Confidence 55666778888899888888877653 37888899999999999999877665332 1 1 23556667777
Q ss_pred HhcC---------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 98 LATG---------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 98 ~~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
|.+. -|- ..+..-+..|.+.|++.+|.+..-+.+.
T Consensus 247 ~~~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHHCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 6666 111 3346678888999999888777655444
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.77 E-value=0.66 Score=30.32 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
.|+.-..+ .+.|++++|.+.|+.+....-..| ....---++.++-+.++++.|...++++...+--.|+ .-|...+.
T Consensus 13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~ 90 (142)
T PF13512_consen 13 LYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMR 90 (142)
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHH
Confidence 34444443 578999999999999875333333 3446677888999999999999999999832222222 23444444
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+++.-..+..++..+...=...+....|+.-|+.+.+.-|+.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 333321111111111111122344567777777776666644
No 187
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.74 E-value=0.35 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVI 43 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~ 43 (145)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777777888888888888777753
No 188
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=2.7 Score=31.32 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=47.9
Q ss_pred HHHhccCCC-CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC
Q 047113 5 ERIFGGIID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 5 ~~~f~~m~~-~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (145)
+.+.++.+. .+..+-+..-....+.|++++|.+-|....+.+|+.| ...||..+-.+ +.++++.|....+++. ..|
T Consensus 132 rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIi-eRG 208 (459)
T KOG4340|consen 132 RSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEII-ERG 208 (459)
T ss_pred HHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHH-Hhh
Confidence 344444442 3333444444455678888888888888665467665 45677766443 5577778888777777 555
Q ss_pred c
Q 047113 84 L 84 (145)
Q Consensus 84 ~ 84 (145)
+
T Consensus 209 ~ 209 (459)
T KOG4340|consen 209 I 209 (459)
T ss_pred h
Confidence 4
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.72 E-value=1.8 Score=32.29 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=74.8
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhc
Q 047113 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDF 82 (145)
Q Consensus 3 ~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (145)
.|.++-.+.+-||..=|-.-|.+++..++|++-..+-. + +-.+.-|-..+.+|.+.|+..+|..+..++. .
T Consensus 195 ~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~-----s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~-~- 265 (319)
T PF04840_consen 195 QAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK-----S--KKSPIGYEPFVEACLKYGNKKEASKYIPKIP-D- 265 (319)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh-----C--CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC-h-
Confidence 46666666677888889999999999999998776543 2 2345889999999999999999988887754 1
Q ss_pred CcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 83 QLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 83 ~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.--+.+|.++ ..|.-.+..+.+.++.+.=..+.++..
T Consensus 266 ---------~~rv~~y~~~----~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 266 ---------EERVEMYLKC----GDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred ---------HHHHHHHHHC----CCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 2223333333 234445666666666655555555443
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.63 E-value=2.9 Score=30.30 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=58.9
Q ss_pred hHHHHhccCCCC--chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC-----CCCcHH-HHHHHHHHhhccchHHHHHHH
Q 047113 3 DAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAFYLVIHCSD-----GKPNNV-TFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 3 ~A~~~f~~m~~~--~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~-----~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 74 (145)
+|.++|+.-..+ -..++..+...+.+.|++++|.++|++... .- .+++.. .|-..+-++-..|+...|...
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~-~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK-KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555544432 234688888999999999999999998765 32 233443 333344466678899999999
Q ss_pred HHHhhhh-cCcCcc--HHHHHHHHHHHhc
Q 047113 75 FDIMVHD-FQLDLN--LEHYGITVDLLAT 100 (145)
Q Consensus 75 ~~~m~~~-~~~~~~--~~~~~~li~~~~~ 100 (145)
+++.... .++..+ ...-..||.+|-.
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 9988732 345433 3333344444443
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.44 E-value=1.2 Score=32.12 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred chHHHHhccCCC--Cch----hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV----VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~----~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|...|+.... |+. ..+--+-.+|...|++++|...|..+.....-.| ....+--+...+...|+.+.|..+
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 466777776642 433 4677888999999999999999999864122222 123333445567789999999999
Q ss_pred HHHhhh
Q 047113 75 FDIMVH 80 (145)
Q Consensus 75 ~~~m~~ 80 (145)
++.+..
T Consensus 240 ~~~vi~ 245 (263)
T PRK10803 240 YQQVIK 245 (263)
T ss_pred HHHHHH
Confidence 999883
No 192
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=2.1 Score=28.26 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=64.8
Q ss_pred HHcCChHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC--
Q 047113 27 AIHGQEREALEAFYLVIHCSDGKPN---NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-- 101 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 101 (145)
.+.++++++..+++.|+- +.|+ ..+|-..+ +...|+|++|.++|+.+. ..+-. ..|..-+.++|-.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~-~~~~~---~p~~kAL~A~CL~al 91 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELL-SSAGA---PPYGKALLALCLNAK 91 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhh-ccCCC---chHHHHHHHHHHHhc
Confidence 358999999999999965 5554 45777666 789999999999999998 33311 1355455555544
Q ss_pred -CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 102 -ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 102 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.|++.. .-......|.-.++..+.+.+..
T Consensus 92 ~Dp~Wr~---~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 92 GDAEWHV---HADEVLARDADADAVALVRALLG 121 (153)
T ss_pred CChHHHH---HHHHHHHhCCCHhHHHHHHHHhc
Confidence 555444 44444466666777777776654
No 193
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.15 E-value=2.7 Score=33.60 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
|+.+|+.||.-+... -++++.+.+++|.. -++-....|..-|..--...+++..+.+|.+.. .. ..++..|...
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL-vk--vLnlDLW~lY 92 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCL-VK--VLNLDLWKLY 92 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH--HhhHhHHHHH
Confidence 899999999987666 99999999999842 333467789999999999999999999999998 22 4457778777
Q ss_pred HHH
Q 047113 95 VDL 97 (145)
Q Consensus 95 i~~ 97 (145)
|+-
T Consensus 93 l~Y 95 (656)
T KOG1914|consen 93 LSY 95 (656)
T ss_pred HHH
Confidence 763
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.96 E-value=0.18 Score=24.33 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred CCchhhHHHHHHHHHHcCChHHHH
Q 047113 13 DKNVVIWSGMIASHAIHGQEREAL 36 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~ 36 (145)
+.|...|+.|-..+.+.|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 447889999999999999999886
No 195
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.96 E-value=2.4 Score=33.47 Aligned_cols=71 Identities=14% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHH
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGI 93 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 93 (145)
|-..+-+.|+.++|.+.|++|.++....-+....-.++.++-..+.+.+++.++.+-. +...+.+ .-.|+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd-Di~lpkSAti~YTa 336 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD-DISLPKSATICYTA 336 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc-cccCCchHHHHHHH
Confidence 4445557899999999999986524333345577889999999999999999999876 4443322 444554
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.87 E-value=4.6 Score=33.49 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li 95 (145)
.|...-+.+.+.+..++|..++.+... +.| ....|.-.-...-..|++.+|.+.|.... -+.|+ +..-+++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 466777778888888888888877643 333 44455544455666777778877777665 34553 55555555
Q ss_pred HHHhcC-------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 96 DLLATG-------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 96 ~~~~~~-------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.++.+. +.+...|=.+-..+...|+.+.|-+.|.-..++++.+|
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 555544 44557899999999999999999999998777665444
No 197
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=2.2 Score=33.11 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=30.1
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.||..-.+.|-+.+...+.+.+|...|....+++|.+
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7788888888888888888888888888877777754
No 198
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.50 E-value=0.86 Score=33.56 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=64.7
Q ss_pred chHHHHhccCCC-------CchhhHHHHHHHHHHcCC----hHHHHHHHHHhHhhcCCCCc-H-HHHHHHHHHhhccch-
Q 047113 2 DDAERIFGGIID-------KNVVIWSGMIASHAIHGQ----EREALEAFYLVIHCSDGKPN-N-VTFLSILFACSYSGL- 67 (145)
Q Consensus 2 ~~A~~~f~~m~~-------~~~~~~~~li~a~~~~g~----~~~A~~~~~~m~~~~~~~p~-~-~~~~~ll~~~~~~~~- 67 (145)
.+|.++++.|++ ++-..+.+|+.. +.++ .+++..+|+.+.. .|+..+ . ...+.++..+....+
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchH
Confidence 478899999975 345667777665 3333 5688899999988 898884 3 355666655544433
Q ss_pred -HHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 68 -IEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 68 -~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
+.++.++++.+. +.|+.+...+|..+.
T Consensus 197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 197 KVARVIELYNALK-KNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHH-HcCCccccccccHHH
Confidence 458999999999 889988777777554
No 199
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.48 E-value=2 Score=27.48 Aligned_cols=51 Identities=6% Similarity=-0.052 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
+...-..+|..+.+.+.+......++.+.. .+ ..+...+|.++..+++...
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~~ 56 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYDP 56 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHCH
Confidence 344556889999999999999999999887 66 3678889999999987643
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.23 E-value=0.91 Score=35.29 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=52.5
Q ss_pred CC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCch-hhHHHHHHHHHhccChhHHHH
Q 047113 49 KP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEP-YVWGALLGACRIHHNVKIGEL 126 (145)
Q Consensus 49 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~ 126 (145)
.| +...++.+-.++.+.|++++|...|++.. .+.|+- ++. .+|..+-.+|...|++++|..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~--------------aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNP--------------DEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCc--------------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44 57789999999999999999999999987 345541 111 346777788888888888888
Q ss_pred HHccCCCC
Q 047113 127 VAKDPFHL 134 (145)
Q Consensus 127 ~~~~~~~~ 134 (145)
.+++..+.
T Consensus 134 ~LrrALel 141 (453)
T PLN03098 134 CLRTALRD 141 (453)
T ss_pred HHHHHHHh
Confidence 88876653
No 201
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.07 E-value=3.5 Score=27.92 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
..|..+..-|++.|+.++|.+.|.+++. .-..|. ...+-.+|..+...+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3688999999999999999999999987 666664 4477888999999999999888888776
No 202
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.03 E-value=7.5 Score=32.10 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.+|=.-+..-..+..+++|..+|...+. ..|+...|.--++.--..+++++|.+++++..
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444455555555555554432 23344444333333334444445554444443
No 203
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.92 E-value=0.13 Score=24.23 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.+|..+-..|...|++++|...|++..++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35777888999999999999999988777663
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.81 E-value=3.9 Score=28.10 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=45.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
.-..+.+.|++++|...|+.+.......| -....-.+..++-+.|+++.|...++.+...+.-.|
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 34456789999999999999876344444 234566778889999999999999999885444333
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.69 E-value=3.9 Score=29.62 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHC---SDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
-|+.-++.+ +.|++.+|...|....+. +-+.||..-| |-.++-..|+++.|..+|..+.++++-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-------- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSP-------- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCC--------
Confidence 488888765 788899999999998641 1234444443 56778889999999999999984433222
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.-..+.-.|-....+.|+.++|..+++.+.+.-|+.+
T Consensus 213 --------KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 213 --------KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred --------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 1223334456677889999999999999888766544
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=2.1 Score=32.76 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=14.0
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.++.+.-++.+.+.+..|.+......
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 207
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.04 E-value=2.6 Score=34.21 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=55.6
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-------------------CC---chhhH-HH
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------------------ET---EPYVW-GA 110 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------------------~p---~~~~~-~~ 110 (145)
.|....-+.--.|+...|..+.+...+...-.|+...|.-....+-+. .+ |-..+ -+
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 445555555557778888888888874333356777766555444444 22 22221 22
Q ss_pred HHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 111 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
--.-+.+.|++++|..++..+...+|++-.+|
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 23456778888999999988888888765554
No 208
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.74 E-value=4.2 Score=26.74 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcC--C--CCcHHHHHHHHHHhhccch-HHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSD--G--KPNNVTFLSILFACSYSGL-IEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~--~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
..|+++.-.+.-+.+.....+++.+..... + ..+..+|.+++++.+...- --.+..+|..|+ +.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHHH
Confidence 478888888888899988888888754111 1 2356689999999988877 667899999999 688899999999
Q ss_pred HHHHHHhcC
Q 047113 93 ITVDLLATG 101 (145)
Q Consensus 93 ~li~~~~~~ 101 (145)
.+|+++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999988776
No 209
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=1.9 Score=37.08 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHH-----HhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF-----ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
|-.+-..|.++|...+|++.|.+... ++..+++ +++|. .+-..-.++.+.+.++.|. ..+++.|..+.--
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D---IKR~vVh-th~L~pEwLv~yFg~lsve~s~eclkaml-~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD---IKRVVVH-THLLNPEWLVNYFGSLSVEDSLECLKAML-SANIRQNLQIVVQ 683 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH---HHHHHHH-hccCCHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhhhHHHHH
Confidence 77888999999999999999988733 4433332 22221 2222334566777778887 7777777776655
Q ss_pred HHHHHhcC-----------------------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 94 TVDLLATG-----------------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 94 li~~~~~~-----------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+..-|... ..|..+.-..|.+-|+.|++.+.+++.++-.
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 55555554 3344444567999999999999999988643
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.63 E-value=4.9 Score=31.42 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+...|..|-+...+.|+++-|.++|..... |..++-.+.-.|+.+....+-+...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 566888888888888888888888877543 4455555666777666666655554
No 211
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.55 E-value=1.6 Score=36.42 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=62.0
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG- 101 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~- 101 (145)
|.+..++..|.+|+.+++.++. .+ .-..-|.-+-+.|+..|+++.|+++|.+-- . ++--|++|.+.
T Consensus 739 ieaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-~---------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEAD-L---------FKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhcc-h---------hHHHHHHHhccc
Confidence 3445567788888888887765 32 334567888889999999999999887654 1 33456666666
Q ss_pred -------------CCch--hhHHHHHHHHHhccChhHHHHHHcc
Q 047113 102 -------------ETEP--YVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 102 -------------~p~~--~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.|.. ..|-+--.-.-.+|++.+|++++-.
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 3333 3444444555666776666665543
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.38 E-value=0.94 Score=35.32 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=50.3
Q ss_pred HHcCChHHHHHHHHHhHhhc--CCCC------------cHHHHHHHHHHhhccchHHHHHHHHHHhhh---hcCcCccHH
Q 047113 27 AIHGQEREALEAFYLVIHCS--DGKP------------NNVTFLSILFACSYSGLIEEGIKVFDIMVH---DFQLDLNLE 89 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~ 89 (145)
.+.+.+.+|.+.+..=.. . +.+| |-.-=++..++..+.|.+++|+.++++|.. .....-+..
T Consensus 90 Y~~k~~~kal~~ls~w~~-~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKE-QIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHh-hhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 467778888877766543 2 2222 111226677888889999999998888873 123346888
Q ss_pred HHHHHHHHHhcC
Q 047113 90 HYGITVDLLATG 101 (145)
Q Consensus 90 ~~~~li~~~~~~ 101 (145)
+|+.++-+++++
T Consensus 169 ~yd~~vlmlsrS 180 (549)
T PF07079_consen 169 MYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHhHH
Confidence 899888888887
No 213
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.07 E-value=0.6 Score=29.97 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhc
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 100 (145)
.+|..+.+.+.++.....++.+.. .+-.-+....+.++..|++.+..+....+++... ++.++ .+++.|-
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~-----~~~~~c~- 81 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLD-----KALRLCE- 81 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CT-----HHHHHHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHH-----HHHHHHH-
Confidence 467777778888888888888876 5555567788888888888877777776666333 22221 1222221
Q ss_pred CCCchhhHHHHHHHHHhccChhHHHHH
Q 047113 101 GETEPYVWGALLGACRIHHNVKIGELV 127 (145)
Q Consensus 101 ~~p~~~~~~~li~~~~~~g~~~~a~~~ 127 (145)
...-|...+-.|.+.|++++|..+
T Consensus 82 ---~~~l~~~a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 82 ---KHGLYEEAVYLYSKLGNHDEALEI 105 (143)
T ss_dssp ---TTTSHHHHHHHHHCCTTHTTCSST
T ss_pred ---hcchHHHHHHHHHHcccHHHHHHH
Confidence 222444455566666776666664
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.95 E-value=1.2 Score=29.15 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 52 NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
...|+.-.. --+.|+++.|...|+.+..++-..| -+= .+--.|+.+|.+.|++++|...+++.
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~--ya~--------------qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGE--YAE--------------QAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCc--ccH--------------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444443 3568999999999999985443332 111 22234788999999999999999999
Q ss_pred CCCCCCCCC
Q 047113 132 FHLDPKNDA 140 (145)
Q Consensus 132 ~~~~~~~~~ 140 (145)
.++.|..+.
T Consensus 74 irLhP~hp~ 82 (142)
T PF13512_consen 74 IRLHPTHPN 82 (142)
T ss_pred HHhCCCCCC
Confidence 998886653
No 215
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=3.5 Score=32.69 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-..+.+.|++..|...|.++.. .. +-|...|+..--++.+.|.+..|..-.+...
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk-r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK-RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667789999999999999877 54 3378899999999999999988877655554
No 216
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.15 E-value=1.1 Score=19.91 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFY 40 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~ 40 (145)
...+-.++.+.|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456677778888888887775
No 217
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=87.87 E-value=6.8 Score=33.74 Aligned_cols=124 Identities=8% Similarity=-0.141 Sum_probs=74.7
Q ss_pred hHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHH--HHHhhccchHHHHHHHHH
Q 047113 3 DAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSI--LFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 3 ~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l--l~~~~~~~~~~~a~~~~~ 76 (145)
.|.+.|+.. ...|...+..+.+.|++...+++|..+.-.-.+ ..| -...+|-. --.+-+.++...+..-|+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q---ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ---KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh---hchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 355666633 345777899999999999999999988443322 111 12222222 223445666666666665
Q ss_pred HhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCchhhHHHHHH-HHHhccChhHHHHHHccCC
Q 047113 77 IMVHDFQLDL-NLEHYGITVDLLATG----------------ETEPYVWGALLG-ACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 77 ~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~ 132 (145)
... ...| |...|..+..+|.++ +|+..--..-+. .-|..|+++++......+.
T Consensus 587 sAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 587 SAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555 4555 678888888888877 443321122222 2366788888887776644
No 218
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.75 E-value=12 Score=29.59 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=69.2
Q ss_pred HhccCCC-C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCc
Q 047113 7 IFGGIID-K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQL 84 (145)
Q Consensus 7 ~f~~m~~-~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 84 (145)
+=+.+++ | |+.+|-.||.-+...|.+++..+++.+|.. -++.=...|..-|++--...++...+.+|.+.. ..
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL-~k-- 105 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCL-KK-- 105 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHH-hh--
Confidence 3344443 3 789999999999999999999999999953 333356688888888888999999999999998 33
Q ss_pred CccHHHHHHHHHHHhcC
Q 047113 85 DLNLEHYGITVDLLATG 101 (145)
Q Consensus 85 ~~~~~~~~~li~~~~~~ 101 (145)
..++..|...++--.+.
T Consensus 106 ~l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 106 SLNLDLWMLYLEYIRRV 122 (660)
T ss_pred hccHhHHHHHHHHHHhh
Confidence 34477777777644433
No 219
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=87.71 E-value=1.5 Score=32.24 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
||..|....+.||+++|+.++++.++ .|+.-=..+|--.+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAER-LGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCchHHHHHHHHh
Confidence 77888888888888888888888888 88775555654444
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.53 E-value=12 Score=29.13 Aligned_cols=37 Identities=8% Similarity=-0.105 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN 52 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~ 52 (145)
...|.+.+...++.|+|++|+++.+.-+...-+.+|.
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 3478899999999999999999999865424445543
No 221
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.51 E-value=1.6 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 52 NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
..+++.+-..+...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4578999999999999999999999887
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.46 E-value=0.78 Score=19.99 Aligned_cols=31 Identities=16% Similarity=0.018 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.|..+-..+...|++++|...+....+..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667778889999999999999987776663
No 223
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.45 E-value=9.5 Score=28.08 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred HcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc--cchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC----
Q 047113 28 IHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY--SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---- 101 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---- 101 (145)
++....+|+.+|+...-+..+..|......+++.... ......--++.+.+....+-.++..+-.+.|..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3445667777777443212355577777777777655 2233344444455553445566666777777777766
Q ss_pred ---------------CCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 102 ---------------ETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 102 ---------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
..|...|...|+.....|+.+-...+..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34778899999999999998888877764
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.41 E-value=3.7 Score=30.03 Aligned_cols=51 Identities=8% Similarity=-0.000 Sum_probs=42.8
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHh----hcCCCCcHHHHHHHHHHhhc
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIH----CSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~ll~~~~~ 64 (145)
-|...|-.||.+|.++|+...|+..|+++.. +.|+.|-..+........++
T Consensus 185 ~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~~ 239 (280)
T COG3629 185 YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILRQ 239 (280)
T ss_pred cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhcc
Confidence 3778999999999999999999999998743 47899998888877776333
No 225
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.33 E-value=5.3 Score=25.80 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 34 EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
|..+.+..+-. .++.|+....-..+.+|.+-+++..|.++|+-++.+.| +--..|..+++
T Consensus 67 EvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 44445555556 78999999999999999999999999999999984333 33335666654
No 226
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.24 E-value=17 Score=30.85 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=68.5
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|..+++.... .|..|...+-..|.+.|+.++|..+|++... .-|+..-...+..++.+.+.+..-+++==+|
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677775543 4888999999999999999999999999854 5678888888999999999886544433333
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
-+ .+.-+...+-++++.+...
T Consensus 137 yK--~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 137 YK--NFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HH--hCCcccchHHHHHHHHHHh
Confidence 21 2333455666666666655
No 227
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.85 E-value=0.25 Score=26.57 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 111 LLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 111 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+--|+.+.|++++|++..+.+.+++|++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 345789999999999999999999998754
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.83 E-value=8.5 Score=26.83 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (145)
--.|-.+..+.|++.||...|.+-.. --+--|....-.+-.+....+++..+.+.++.+- +.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~-e~~ 154 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM-EYN 154 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh-hcC
Confidence 34677888999999999999998764 4455578888888888888999999999998887 443
No 229
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.63 E-value=4.1 Score=26.93 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=36.2
Q ss_pred chHHHHhccCCC--C---chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 2 DDAERIFGGIID--K---NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 2 ~~A~~~f~~m~~--~---~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
+++..+++.|+. | ...+|...| +.+.|+|++|.++|++..+ .+. ...|...+.++|-
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~-~~~---~~p~~kAL~A~CL 88 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS-SAG---APPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc-cCC---CchHHHHHHHHHH
Confidence 567777776642 3 334454444 5789999999999999976 332 2244444444444
No 230
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.39 E-value=6.3 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPN---NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
..-.+.++.+++..+++-++. ++|. ..++-..+ +...|+|+.|.++|+.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh
Confidence 344578899999999999966 5664 34555555 788999999999999988
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.35 E-value=3.7 Score=30.29 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHH--cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc--cc----hHHHHHHHHHHhhhhcCcC
Q 047113 15 NVVIWSGMIASHAI--HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY--SG----LIEEGIKVFDIMVHDFQLD 85 (145)
Q Consensus 15 ~~~~~~~li~a~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~~~ 85 (145)
...++.++|..... ...+++.+.+++.|.+ .|++.+..+|-+..-.... .. .+.++..+|+.|++++.+-
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 44556666665544 2236678889999999 9999999888664433333 33 3568999999999766653
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=86.34 E-value=3.9 Score=27.49 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=60.4
Q ss_pred CchHHHHhccCC--CC-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 1 MDDAERIFGGII--DK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 1 ~~~A~~~f~~m~--~~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+++|+++|.-+. .| |..=|-.|-..+-..+.+++|+.+|...-. .+ +-|...+-.+-.++-..|+.+.|+..|..
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 367889998553 33 555577777777789999999999988655 44 23666677778889999999999999998
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 131 a~ 132 (165)
T PRK15331 131 VN 132 (165)
T ss_pred HH
Confidence 88
No 233
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.28 E-value=9.9 Score=27.07 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=9.7
Q ss_pred HHhhccchHHHHHHHHHHhh
Q 047113 60 FACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~ 79 (145)
.++-+.++++.|...+++..
T Consensus 77 ~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 77 YAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 33444455555555555444
No 234
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.85 E-value=5.2 Score=24.74 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
|++.+-.+.+.||.|.+++.-|.++|+..+.+.|-+ ...|.-++
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 778889999999999999999999999987644433 22666666
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.80 E-value=8.4 Score=25.77 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.1
Q ss_pred chHHHHhccCCC--Cc---hhhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 2 DDAERIFGGIID--KN---VVIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~---~~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
++++.+++.++. |. ..++... .+.+.|+|++|.++|+++..
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhc
Confidence 567777776642 32 3344444 46789999999999999866
No 236
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.16 E-value=9.3 Score=25.74 Aligned_cols=87 Identities=5% Similarity=-0.040 Sum_probs=42.1
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC------------CCchh
Q 047113 39 FYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG------------ETEPY 106 (145)
Q Consensus 39 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~------------~p~~~ 106 (145)
.+.+.+ .+++|+...+..+++.+.+.|++....++ . ++++-+|...-...+-.+... ..-..
T Consensus 17 irSl~~-~~i~~~~~L~~lli~lLi~~~~~~~L~ql----l-q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 17 IRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQLHQL----L-QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHH----H-hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 334444 55666666666666666666655333222 2 233333332222222222221 11112
Q ss_pred hHHHHHHHHHhccChhHHHHHHccC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
.+..++..+-..|++-+|+++.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3455666777777777777777664
No 237
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=5 Score=30.66 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=35.4
Q ss_pred hHHHHhccCCCC---chhhHHHHHH-HHHHcCChHHHHHHHHHhHhhcCCCCcHHH-HHHHHHHhhccchHHHHHHHHHH
Q 047113 3 DAERIFGGIIDK---NVVIWSGMIA-SHAIHGQEREALEAFYLVIHCSDGKPNNVT-FLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 3 ~A~~~f~~m~~~---~~~~~~~li~-a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+|+++|=.+..| |..+|.+++. .|.+++.++.|+.+|-.+.. ..+..+ .-.+-.-|-+.+.+=-|...|+.
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 355555555443 4455555443 34456666666666655432 111111 12333445555555555555555
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
+.
T Consensus 487 lE 488 (557)
T KOG3785|consen 487 LE 488 (557)
T ss_pred HH
Confidence 54
No 238
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=84.26 E-value=4.7 Score=35.88 Aligned_cols=74 Identities=8% Similarity=0.044 Sum_probs=49.5
Q ss_pred HHHHhccCCC-Cc-hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 4 AERIFGGIID-KN-VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 4 A~~~f~~m~~-~~-~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-.++|++... -| -..|-.|...|.+.+.+++|.++|+.|.++.| -....|....+...+..+-++|..++.+..
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3566666654 23 34688888888888888888888888876344 345567777777777666655555555433
No 239
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.17 E-value=3.2 Score=31.55 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 102 (145)
+-|.+.|.+++|+.+|..-.. +.| |.+++..--.+|-+...+..|+.-..... . .-...+.+|+|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-a--------Ld~~Y~KAYSRR- 171 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-A--------LDKLYVKAYSRR- 171 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-H--------hhHHHHHHHHHH-
Confidence 457789999999999987432 456 88999888889988888876666444443 1 112233444432
Q ss_pred CchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+.+-...|+.++|..=++...+++|.
T Consensus 172 ---------~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 ---------MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred ---------HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 33333455666666666666666664
No 240
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.77 E-value=4.1 Score=21.21 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=16.0
Q ss_pred HHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 27 AIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
.+.|..+++..++++|++ .|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQ-AGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHH-cCcccCHHHHHHHH
Confidence 344555555555555544 55555554444444
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.42 E-value=15 Score=26.59 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=27.4
Q ss_pred HcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhh
Q 047113 28 IHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
+.|++++|.+-|+.+..+....| ...+.-.++-+.-+.++++.|....++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 55555555555555544333333 3334444455555555555555555555533
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.40 E-value=0.5 Score=21.80 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=22.2
Q ss_pred HHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 111 LLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 111 li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+-..+.+.|+.++|.+.|+++.+.-|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 456777889999999999998876664
No 243
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.26 E-value=4.8 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
+....+.|.++++..+++.|. +.|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~-~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQ-QAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHH-HcCcccCHHHHHHHHHH
Confidence 334567888889999999998 99999999998887764
No 244
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.19 E-value=0.62 Score=29.91 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc----HHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN----LEH 90 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~ 90 (145)
+....+.++..|++.++.++..+.++.. .. .-...+++.|.+.|.++.+..++.++. +..--.+ ..-
T Consensus 41 ~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~~l~~~a~~Ly~~~~-~~~~al~i~~~~~~ 111 (143)
T PF00637_consen 41 NPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKHGLYEEAVYLYSKLG-NHDEALEILHKLKD 111 (143)
T ss_dssp SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTTTSHHHHHHHHHCCT-THTTCSSTSSSTHC
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhcchHHHHHHHHHHcc-cHHHHHHHHHHHcc
Confidence 5677899999999998888888888732 11 333667888999999999999999877 3221111 111
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHhccCh
Q 047113 91 YGITVDLLATGETEPYVWGALLGACRIHHNV 121 (145)
Q Consensus 91 ~~~li~~~~~~~p~~~~~~~li~~~~~~g~~ 121 (145)
+...+ -|++..++...|..+++.|...+..
T Consensus 112 ~~~a~-e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 112 YEEAI-EYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SCCCT-TTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHH-HHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 11111 2333356677788888777666543
No 245
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.09 E-value=8.1 Score=26.25 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=42.7
Q ss_pred HHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 25 SHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.....++.+......+...+.....|+...|..++.++...|+.++|.+...++.
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3335556665555555554436678999999999999999999999999999988
No 246
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.83 E-value=24 Score=28.71 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHH--------HhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC-c
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFY--------LVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD-L 86 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~--------~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~ 86 (145)
.++-=.++......|+++.|++++. ...+ .+..|-. ...++..+.+.++.+.|.+++........-. +
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 3444556666677788888888877 5554 4444443 3445555666666666666666555211111 1
Q ss_pred cHHHH--------------------HHHHHHHhcC-CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 87 NLEHY--------------------GITVDLLATG-ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 87 ~~~~~--------------------~~li~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...-. .+++.=..+- ++|..+-..++.+|++. ++++|..+-+++..
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 11111 1111111110 66777777777777777 67777777666543
No 247
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.76 E-value=12 Score=26.06 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhc--CcCccHHHHHHHHHHHhc
Q 047113 34 EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDF--QLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~ 100 (145)
+|.+.|-.+.. .+..-++..--.+-.-|. ..+-+++.+++.....-. +-.+|...+.+|.+.|-+
T Consensus 124 ~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 124 EALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34444444443 332223333233333232 333444444444443211 113445555555555443
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.76 E-value=11 Score=24.71 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD 85 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 85 (145)
..-.+..+++..+.|+-++-.+++.++.+ . -++++...--+-.+|.+-|+...+.+++.+.. +.|+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-N-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-c-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-HhchH
Confidence 34456777888888888888888887643 2 25677777778888888888888888888887 66654
No 249
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=82.65 E-value=4.5 Score=28.82 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.|.... .+.+.|+++.|...|+.+.. ..|+ ...-.+. -.+..++-+.|++++|...+++..
T Consensus 35 ~Y~~A~-~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~--------------l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 35 IYATAQ-QKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQ--------------LDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHH-HHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444444 34668999999999999983 2332 1221222 236678889999999999999988
Q ss_pred CCCCCCC
Q 047113 133 HLDPKND 139 (145)
Q Consensus 133 ~~~~~~~ 139 (145)
+..|+++
T Consensus 97 ~~~P~~~ 103 (243)
T PRK10866 97 RLNPTHP 103 (243)
T ss_pred HhCcCCC
Confidence 8877665
No 250
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.28 E-value=5.2 Score=26.28 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHHcCC-hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHH
Q 047113 14 KNVVIWSGMIASHAIHGQ-EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE 70 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 70 (145)
.+-.+|++++.+.++..- ---+..+|..|++ .+.+++..-|..+|++|.+...-+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 356689999999988777 6678899999998 8999999999999999987744433
No 251
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.93 E-value=13 Score=30.18 Aligned_cols=106 Identities=8% Similarity=-0.063 Sum_probs=68.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH--HHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI--TVDLL 98 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~--li~~~ 98 (145)
+=++-+...|++++|...-..+.. .+ +-|...+-.-+-+..+.+.|+.|..+.+.= +. ..+++. +=.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~-~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~----~~---~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS-IV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN----GA---LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-cC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc----ch---hhhcchhhHHHHH
Confidence 335666778899999999998865 33 334556667777788999998887443322 21 112222 35566
Q ss_pred hcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 99 ATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 99 ~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
|.- +.|...--.--..+-+.|++++|+.+++++.+..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 644 1122233333467889999999999999986643
No 252
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=80.55 E-value=11 Score=32.15 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=50.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc--cHHHHHHHHHHHh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL--NLEHYGITVDLLA 99 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~ 99 (145)
|=..|-..|.|++|.++-+.-.+ ..--.||-.--.-.-..++++.|.+.|++-. ...++. =..-|.--|.-|.
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DR----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~-~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDR----IHLRNTYYNYAKYLEARRDIEAALEYYEKAG-VHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccc----eehhhhHHHHHHHHHhhccHHHHHHHHHhcC-ChHHHHHHHHHhChHHHHHHH
Confidence 33444556666666666544221 2223344344444455666777777776554 222110 0111222334444
Q ss_pred cCCCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 100 TGETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+...|..-|.+--.-.-..|+.|.|+.++...+
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 443343444444444455666666666665543
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.50 E-value=15 Score=28.96 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=50.4
Q ss_pred chHHHHhccCCC--CchhhHHHHHH-HHHHcCChHHHHHHHHHhHh-hcCCC-CcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNVVIWSGMIA-SHAIHGQEREALEAFYLVIH-CSDGK-PNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~~~~~li~-a~~~~g~~~~A~~~~~~m~~-~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+.|.++++.+.. |+..-|.-.-. .+...|++++|++.|+.... +...+ .....+==+.-.+.-..+|++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 467888888865 77777765543 34458899999999996432 01111 111222223334566889999999999
Q ss_pred Hhhh
Q 047113 77 IMVH 80 (145)
Q Consensus 77 ~m~~ 80 (145)
.+..
T Consensus 330 ~L~~ 333 (468)
T PF10300_consen 330 RLLK 333 (468)
T ss_pred HHHh
Confidence 9983
No 254
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.41 E-value=6 Score=29.23 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=39.3
Q ss_pred CCCCcHHH-HHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 47 DGKPNNVT-FLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 47 ~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.+.||..+ ||..|+.-.+.|++++|..++++.. +.|+.--..+|-.-+
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe-~LG~~~Ar~tFik~V 299 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAE-RLGSTSARSTFISSV 299 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCchHHHHHHHHh
Confidence 45577664 5899999999999999999999999 999887666665444
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.38 E-value=18 Score=27.89 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
..+++.|...+.+.+++.+|+..=..... .+ ++|....=---.++...|+++.|+..|..++ .++|+-..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~---k~~P~Nka 326 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLE-LD-PNNVKALYRRGQALLALGEYDLARDDFQKAL---KLEPSNKA 326 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH---HhCCCcHH
Confidence 35788999999999999999998887654 33 4477777777889999999999999999999 46775333
No 256
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.88 E-value=19 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhHhhcCCCCc-HHH-----HHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 32 EREALEAFYLVIHCSDGKPN-NVT-----FLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p~-~~~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.+.|+.+|+.+.++...+-+ ... --..+-.|.+.|.++.|.+++++..+ .|+....-.-+...-+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHc
Confidence 56899999998874443211 111 12345579999999999999999883 45544444444444444
No 257
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.57 E-value=12 Score=22.97 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=34.4
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
|+..+-.+.+.||-|.+|+.-|.++|+..+.+.|- +...|..++
T Consensus 40 P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 40 PEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 67778899999999999999999999987742332 444666665
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.00 E-value=17 Score=28.81 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhcC-cCccHHHHHHHHHHHhcC
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMVHDFQ-LDLNLEHYGITVDLLATG 101 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~ 101 (145)
.|...|.+..+...++.|..+|-+.. +.+ ..+++..++++|.-++..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHHhcC
Confidence 45555566666666666666666666 445 345566666666665554
No 259
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.74 E-value=4.1 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
-|..|+.-|..+|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999998765
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=76.27 E-value=19 Score=23.64 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=63.4
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 102 (145)
.+.+..|+.++|++.|.+-.. +-| ....||.--.++.-.|+.++|..-+++..+-.|-+ +....-
T Consensus 51 valaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacq---------- 116 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQ---------- 116 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHH----------
Confidence 567889999999999999754 444 78899999999999999999999888887545533 211111
Q ss_pred CchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+|..--..|...|+-++|+.=|+...+
T Consensus 117 ----a~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 117 ----AFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred ----HHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 122222345556777777666654433
No 261
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=75.95 E-value=1.1 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 30 GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 30 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
|-.++..++|++|.. ..+.|....||-.|+-|..
T Consensus 6 gy~~~lI~vFK~~pS-r~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPS-RNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcc-cccCccceeeeeeHHHHHH
Confidence 567788999999999 8899999999888865543
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.66 E-value=36 Score=26.06 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.|.+.+|...++.+.+ +++.|...++..-++|.-.|+-+.....++++.
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 3444555555555432 344455555555555555555555555555554
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.42 E-value=24 Score=25.61 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=59.5
Q ss_pred hHHHHhccCCC--Cc-h---hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHhhccchHHHHHHHH
Q 047113 3 DAERIFGGIID--KN-V---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 3 ~A~~~f~~m~~--~~-~---~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
.|...|..--. |+ . ..+==|..++...|++++|...|..+.++.+-.|-. .++-=+-....+.|+.+.|...|
T Consensus 159 ~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl 238 (262)
T COG1729 159 EAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATL 238 (262)
T ss_pred HHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45556654422 32 2 234458899999999999999999987656655543 56666777788999999999999
Q ss_pred HHhhhhcC
Q 047113 76 DIMVHDFQ 83 (145)
Q Consensus 76 ~~m~~~~~ 83 (145)
+.+.+++-
T Consensus 239 ~qv~k~YP 246 (262)
T COG1729 239 QQVIKRYP 246 (262)
T ss_pred HHHHHHCC
Confidence 99986543
No 264
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.24 E-value=7.2 Score=26.51 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
.|+...|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37889999999999999999999999999865
No 265
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.23 E-value=8.1 Score=19.80 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=15.9
Q ss_pred HHHHHHHcCChHHHHHHHHHhHh
Q 047113 22 MIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
|-.+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44567777777777777777654
No 266
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.98 E-value=4.3 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=23.5
Q ss_pred HcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh
Q 047113 28 IHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 62 (145)
..|.-.+|..+|..|.. +|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLE-RGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHh-CCCCCc--cHHHHHHHh
Confidence 44666778888888888 888876 366777654
No 267
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.35 E-value=27 Score=29.16 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=54.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHh-hcCCCCcHHHHHHHHHHhhccchHHH--HHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIH-CSDGKPNNVTFLSILFACSYSGLIEE--GIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~-~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
+|+.||..+|++-++..+++.+.. -.|-+.-...+|.-|....+.|.++- ..+=..+...+..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 899999999999999999998754 02333345678888888899998753 111122222244456678888888765
Q ss_pred Hhc
Q 047113 98 LAT 100 (145)
Q Consensus 98 ~~~ 100 (145)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 268
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.17 E-value=38 Score=29.22 Aligned_cols=115 Identities=7% Similarity=0.046 Sum_probs=69.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC--------CCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC-
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSD--------GKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD- 85 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~- 85 (145)
+..+|..|-..|.+-++.|=|.-++..|..-.| -.|+... .-+--...+.|.+++|..++++.+ ++.+-
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e-akvAvLAieLgMlEeA~~lYr~ck-R~DLlN 833 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE-AKVAVLAIELGMLEEALILYRQCK-RYDLLN 833 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh-hHHHHHHHHHhhHHHHHHHHHHHH-HHHHHH
Confidence 467899999999999999999999888854222 2332111 111222467899999999999988 55421
Q ss_pred ---ccHHHHHHHHHHHhcC--CCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 86 ---LNLEHYGITVDLLATG--ETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 86 ---~~~~~~~~li~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
.+...|..-+..--.. ..-..||-..-+-+...++.+.|++.|++.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2222222222211111 112235555556666677788888777753
No 269
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.03 E-value=35 Score=25.17 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=54.5
Q ss_pred hHHHHhc---cCCCCchhhHHHHHHHHHHcC---ChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHH
Q 047113 3 DAERIFG---GIIDKNVVIWSGMIASHAIHG---QEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 3 ~A~~~f~---~m~~~~~~~~~~li~a~~~~g---~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
.|..-|. ++..++...+..+-.++.... .-.++..+|+++.. ..| |+.+-..+-..+.+.|++.+|...|
T Consensus 174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444444 334456666666666555433 56799999999865 455 6777788888899999999999999
Q ss_pred HHhh
Q 047113 76 DIMV 79 (145)
Q Consensus 76 ~~m~ 79 (145)
+.|.
T Consensus 251 q~lL 254 (287)
T COG4235 251 QMLL 254 (287)
T ss_pred HHHH
Confidence 9999
No 270
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.03 E-value=12 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=41.6
Q ss_pred HhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 61 ACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
...+.|+++.|...|+.+..+....|- -....-.+..++-+.|++++|...+++..+.-|+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~----------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPY----------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTT----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 456789999999999999843322221 112333467888899999999999999888777554
No 271
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=72.92 E-value=50 Score=26.87 Aligned_cols=116 Identities=9% Similarity=0.079 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 93 (145)
+-+|...|+.--|..=...|..+|...++ .+..+ ++...+++|.-+|. ++...|..+|+.=.+++|-.|- +.-|-.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45788888888888888999999999988 77777 77788888887765 5566777777765435554442 111222
Q ss_pred HHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 94 TVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 94 li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+...-+. ......|..+|.-=...|++..+..+-++...
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22222211 11336788888888888998888888777655
No 272
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=70.59 E-value=16 Score=27.42 Aligned_cols=38 Identities=26% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSI 58 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 58 (145)
.||+.|.++|.+++|+++....++...--|+......+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 67899999999999999998876534444554444333
No 273
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.55 E-value=12 Score=20.58 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 32 EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.++..++.+.++. .+.|-.-.--+|.++.+.|.+++|.+..+.+.
T Consensus 6 ~~~~~~~~~~lR~---~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRA---QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555433 23455555666777777777777777666665
No 274
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=69.58 E-value=25 Score=22.16 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred chHHHHhccCCC-----Cc-hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc---H-HHHHHHHHHhhccchHHHH
Q 047113 2 DDAERIFGGIID-----KN-VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN---N-VTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 2 ~~A~~~f~~m~~-----~~-~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~---~-~~~~~ll~~~~~~~~~~~a 71 (145)
++|..+|++-.. ++ ...+-.+-..+...|++++|..+|++... . .|+ . .....+-.+....|..++|
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~-~--~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE-E--FPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 356666664322 11 23566777889999999999999999765 2 143 1 1222223356778888888
Q ss_pred HHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 72 IKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 72 ~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
...+-... .++..-|.--|..|+
T Consensus 95 l~~~l~~l-----a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 95 LEWLLEAL-----AETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 88776655 244446666665554
No 275
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.51 E-value=21 Score=22.11 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
......|++++|..+.+.+. .||...|.++- -.+.|.-+....=+.+|. ..| +|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALc--e~rlGl~s~l~~rl~rla-~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC-----YPDLEPWLALC--EWRLGLGSALESRLNRLA-ASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCC-----CchHHHHHHHH--HHhhccHHHHHHHHHHHH-hCC-CHHHHHHH
Confidence 44567788888888777653 58888877765 345555555555555555 334 55544443
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.49 E-value=7.9 Score=22.68 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhccChhHHHHHHcc
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.+...|+.+|+.-|++++.+.+...
T Consensus 44 ~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 44 RVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999998876543
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.38 E-value=43 Score=28.29 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=33.7
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCC--CcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--PNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
||+|++++-+|..+|. .|..+-+.|+|-...++++- .. ++.. --...|+.+-+.++....|+.|.+.+..
T Consensus 750 feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~-g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN-GG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc-cC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677666666663 34455555555555555532 11 1110 0123445555555555555555544443
No 278
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.12 E-value=20 Score=24.64 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=36.3
Q ss_pred chHHHHhccCC--CCch-hhHHHHHHHHHHcC----C-------hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 2 DDAERIFGGII--DKNV-VIWSGMIASHAIHG----Q-------EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 2 ~~A~~~f~~m~--~~~~-~~~~~li~a~~~~g----~-------~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
++|..-|++.- .|+- .++.++-.|+...+ + +++|...|..... ..|+...|+.-+..+.+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~k--- 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAAK--- 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHh---
Confidence 34555555332 2433 34445555554333 2 5556666665433 57999999998887754
Q ss_pred HHHHHHHHHHhh
Q 047113 68 IEEGIKVFDIMV 79 (145)
Q Consensus 68 ~~~a~~~~~~m~ 79 (145)
|-+++.++.
T Consensus 126 ---ap~lh~e~~ 134 (186)
T PF06552_consen 126 ---APELHMEIH 134 (186)
T ss_dssp ---HHHHHHHHH
T ss_pred ---hHHHHHHHH
Confidence 455555555
No 279
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.93 E-value=44 Score=24.70 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=70.6
Q ss_pred chHHHHhccCCC-----CchhhHHHHHHHHHH-cC-ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-----KNVVIWSGMIASHAI-HG-QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-----~~~~~~~~li~a~~~-~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
-+|.++|+.... .|..+=..|+..... .+ ....-.++.+.+..+.|-.++..+...+|...++.++|..-.++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 357777773322 355566666666665 22 23333444455444366788888999999999999999999999
Q ss_pred HHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 75 FDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 75 ~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
+.......+...|..-|..+|+.-.+.
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~s 251 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVES 251 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHc
Confidence 998884435667889999999888776
No 280
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.41 E-value=41 Score=24.11 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhh-hcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVH-DFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~~li 95 (145)
|-+..|+.+.+.+...+|+....+=.+ -+| |...-..+++.+|-.|+|++|..=++.... .....+-..+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345667788889999999999887544 355 666778899999999999998876665551 123455678888888
Q ss_pred HHHh
Q 047113 96 DLLA 99 (145)
Q Consensus 96 ~~~~ 99 (145)
.+=.
T Consensus 80 r~ea 83 (273)
T COG4455 80 RCEA 83 (273)
T ss_pred HHHH
Confidence 6544
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=54 Score=27.08 Aligned_cols=22 Identities=5% Similarity=-0.206 Sum_probs=13.0
Q ss_pred HHHHHHHhccChhHHHHHHccC
Q 047113 110 ALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 110 ~li~~~~~~g~~~~a~~~~~~~ 131 (145)
...-+|-..|+++++++++..-
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHhc
Confidence 3344555667777776666543
No 282
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.14 E-value=60 Score=25.86 Aligned_cols=123 Identities=7% Similarity=0.053 Sum_probs=72.3
Q ss_pred CchHHHHhccCCC-----C----chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHH
Q 047113 1 MDDAERIFGGIID-----K----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 1 ~~~A~~~f~~m~~-----~----~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 71 (145)
+.+|+++|-.+-. | -.+--+-+|+||..++ .+.........++..|-.|=..-|-.++ +-+.+.++.|
T Consensus 22 ~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~ka 98 (549)
T PF07079_consen 22 FQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKA 98 (549)
T ss_pred hhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHH
Confidence 3567788876632 1 1234667888887654 4455555555554244222222333333 4577888888
Q ss_pred HHHHHHhhhh-cCcCcc-HHH-HHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 72 IKVFDIMVHD-FQLDLN-LEH-YGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 72 ~~~~~~m~~~-~~~~~~-~~~-~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+.+..-..+ .+-+|. ..+ ..-++ +|..-=+...+.....|++.+++.+.+++..
T Consensus 99 l~~ls~w~~~~~~~~~~~Ld~ni~~l~-------~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 99 LQALSVWKEQIKGTESPWLDTNIQQLF-------SDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHHHHHhhhcccccchhhhhHHHHh-------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 8888766632 122322 111 11222 3555556677888999999999999998776
No 283
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=68.12 E-value=27 Score=27.24 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=55.2
Q ss_pred HHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH-----------HhhhhcCcCccH---HHH
Q 047113 26 HAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD-----------IMVHDFQLDLNL---EHY 91 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-----------~m~~~~~~~~~~---~~~ 91 (145)
+.+.|++.+|+..|+.... .+.+-......+.+++.++.. ++. +..+..+. .--
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~-----------~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~-Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH-----------SIPLLVVESREEEDEAKELIEICREYILGLSIELE-RRELPKDPVEDQKR 281 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH-----------HHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HCTS-TTTHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH-----------HhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccchhhHHH
Confidence 4579999999999998765 122222222222333333322 222 33333221 234
Q ss_pred HHHHHHHhcC-----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 92 GITVDLLATG-----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 92 ~~li~~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+.=+.+|... ..-.-+.++.|..+.+.+++.-|..+.+++.++.|+
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4556666655 223346777788888888888888888888877664
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.33 E-value=35 Score=28.63 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 47 DGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 47 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
|.....-|.+--+.-+...|+..+|.++-++++ .||-..|-.=+.+++..
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADI 728 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhh
Confidence 333333344444444555555555555544444 44444444444444433
No 285
>PRK04841 transcriptional regulator MalT; Provisional
Probab=66.74 E-value=79 Score=26.78 Aligned_cols=116 Identities=11% Similarity=-0.024 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCC-CcHHHHHHHHHHhhccchHHHHHHHHHHhhh---hcCcC--c-c
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHC---SDGK-PNNVTFLSILFACSYSGLIEEGIKVFDIMVH---DFQLD--L-N 87 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~--~-~ 87 (145)
.++.+-..+...|++++|...+.+.... .|-. +-..+.+.+-..+...|+++.|...+++... ..+.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4566677778899999999998886530 1111 1123445566677889999999998887652 12221 1 1
Q ss_pred HHHHHHHHHHHhcC--------------------CC--chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LEHYGITVDLLATG--------------------ET--EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~~~~~li~~~~~~--------------------~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...+..+...+... .+ ....+..+-......|+.++|.+.++....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12222222222111 11 123444455677788999999888776644
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.01 E-value=32 Score=26.03 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=55.8
Q ss_pred cCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhh--cCcCcc--HHHHHHHHHHHhcC--------------CCchhh
Q 047113 46 SDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHD--FQLDLN--LEHYGITVDLLATG--------------ETEPYV 107 (145)
Q Consensus 46 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~--~~~~~~li~~~~~~--------------~p~~~~ 107 (145)
.|......+...++..-.....++.+...+-.+.+. ....|+ .++|--++.-|--. -||-++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 556667777777777777777788887777776621 122333 33444443333221 778888
Q ss_pred HHHHHHHHHhccChhHHHHHHccC
Q 047113 108 WGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 108 ~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
++.+|+.+.+.|++.+|.++.-.|
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Confidence 888899998888888887765443
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=65.31 E-value=21 Score=25.78 Aligned_cols=71 Identities=15% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 52 NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
...|+-.+. --+.|+++.|...|+.+.+++-+.|=. = .+---++-++-+.+++++|...+++.
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~--~--------------qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYS--E--------------QAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCccc--H--------------HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 334444443 357899999999999998665555421 1 22233677888899999999999998
Q ss_pred CCCCCCCC
Q 047113 132 FHLDPKND 139 (145)
Q Consensus 132 ~~~~~~~~ 139 (145)
.+..|..+
T Consensus 98 i~lyP~~~ 105 (254)
T COG4105 98 IRLYPTHP 105 (254)
T ss_pred HHhCCCCC
Confidence 88776544
No 288
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.81 E-value=6.5 Score=27.06 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.4
Q ss_pred HHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 109 GALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 109 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
-..+..|.+.|.+++|.++++++.. +|+
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCC
Confidence 4467899999999999999999877 443
No 289
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=64.66 E-value=9.4 Score=22.53 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=38.4
Q ss_pred HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHH
Q 047113 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 7 ~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 71 (145)
+++-+.+.++.|..-.-..-+...+.++|..+++.++. . ....|....++.-+.|+-.-|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~-R----G~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLET-R----GKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHh-c----CHHHHHHHHHHHHhcCchHHH
Confidence 44444455566655555555666788888888888876 3 455666777776666654433
No 290
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=63.79 E-value=31 Score=20.98 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc--chHHHHHHHHHHhhhhcCcCcc
Q 047113 20 SGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS--GLIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 20 ~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~ 87 (145)
..+|.-|...|+.++|...+.++.. .. --......++..+... ..-+....++..+. ..+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~-~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~-~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL-PS--QHHEVVKVILECALEEKKSYREYYSKLLSHLC-KRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT--GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC-Cc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-hcCCCCH
Confidence 4566778888999999999998765 21 2223334555555554 33455777788887 5565544
No 291
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.76 E-value=28 Score=20.44 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=32.9
Q ss_pred HcCChHHHHHHHHHhHhhcCCCC-c-HHHHHHHHHHhhccchHHHHHHH
Q 047113 28 IHGQEREALEAFYLVIHCSDGKP-N-NVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
..+..++|+..|....+ .-..| + -.++..++.+++..|.+..+..+
T Consensus 18 ~~~~~~~Al~~W~~aL~-k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE-KITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999988655 33333 3 23778889999999998765543
No 292
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=62.68 E-value=40 Score=25.93 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
.+..+...|+..-|+....++.+ +.| |+.-|-.--++|...|....|..-++
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455566777777777776644 455 66666666666666666655554433
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.62 E-value=62 Score=26.01 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHH
Q 047113 34 EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLG 113 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~ 113 (145)
+...+|++.- ..+..|..-|..-+.-|.+.+.+.+...+|..|...++-.|+ ..++. ...
T Consensus 89 rIv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d-----------------LWI~a-A~w 148 (568)
T KOG2396|consen 89 RIVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD-----------------LWIYA-AKW 148 (568)
T ss_pred HHHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch-----------------hHHhh-hhh
Confidence 4455565543 345568899999998888888888888899988844333333 22211 123
Q ss_pred HHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 114 ACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 114 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
-|-.+-+++.|+.+|.+-.+..|+.|..|
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 34455558888888888888888776543
No 294
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=62.40 E-value=11 Score=22.50 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=35.3
Q ss_pred HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHH
Q 047113 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIE 69 (145)
Q Consensus 7 ~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 69 (145)
+++.+...++.|-.-.-..-+...+.+++..+++.+.. . ....|....+++...+.-.
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~-R----G~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPK-R----GPRAFSAFCEALRETSQEH 82 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHH-h----ChhHHHHHHHHHHhcChHH
Confidence 44444444555544444444555678888888888776 4 3556777777776655433
No 295
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.88 E-value=45 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=10.3
Q ss_pred HHHhhccchHHHHHHHHHHhh
Q 047113 59 LFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~ 79 (145)
-.-|.+.|+++.|..+|+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555444
No 296
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=61.81 E-value=26 Score=19.78 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 27 AIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
...|+.+++.+++++... .|..|.......+..+..+-|.
T Consensus 12 l~~~d~~~~~~~~~~~l~-~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALA-QGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHH-CSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988 7888888877778777766554
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.61 E-value=53 Score=22.96 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=43.6
Q ss_pred hccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC--------------------CCchhhHHHHHHHHHhccChh
Q 047113 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--------------------ETEPYVWGALLGACRIHHNVK 122 (145)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------------------~p~~~~~~~li~~~~~~g~~~ 122 (145)
++.|+- .|...|-.+. ..+..-++..-.+|..-|.+. .+|...+.+|...|-+.|+++
T Consensus 118 sr~~d~-~A~~~fL~~E-~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGDQ-EALRRFLQLE-GTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCcH-HHHHHHHHHc-CCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 444553 4555555565 455556777777777777665 667889999999999999999
Q ss_pred HHH
Q 047113 123 IGE 125 (145)
Q Consensus 123 ~a~ 125 (145)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 883
No 298
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.49 E-value=28 Score=20.82 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=6.8
Q ss_pred cCChHHHHHHHHHh
Q 047113 29 HGQEREALEAFYLV 42 (145)
Q Consensus 29 ~g~~~~A~~~~~~m 42 (145)
.|+.+.|..+++.+
T Consensus 49 ~g~~~~ar~LL~~L 62 (88)
T cd08819 49 HGNESGARELLKRI 62 (88)
T ss_pred cCcHHHHHHHHHHh
Confidence 34555555555444
No 299
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.02 E-value=18 Score=17.27 Aligned_cols=25 Identities=4% Similarity=0.130 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 67 LIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.+|.|..+|++.. . +.|++.+|-..
T Consensus 2 E~dRAR~IyeR~v-~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFV-L--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHH-H--hCCCchHHHHH
Confidence 4677777787777 2 34666666543
No 300
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.37 E-value=41 Score=21.32 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 34 EALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++.++|..|.. .|+-. .+.-|..--..+...|+++.|.++|..
T Consensus 81 ~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999988 77655 466778888888889999999998864
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.72 E-value=47 Score=25.25 Aligned_cols=108 Identities=8% Similarity=-0.023 Sum_probs=64.4
Q ss_pred HHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC--cCccHHH-HHHHHHHHhcC-
Q 047113 26 HAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ--LDLNLEH-YGITVDLLATG- 101 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~-~~~li~~~~~~- 101 (145)
+....|++.-..+++.-+ =-+.|..-+-..|.+.|+.+.|.++.++..-..+ +.|+-.. ...+-.+-++.
T Consensus 20 ~v~~~Dp~~l~~ll~~~P------yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 20 AVQSHDPNALINLLQKNP------YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HHHccCHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 344456666666554321 1566777777788999999888888887762111 1111000 00111111222
Q ss_pred --CC-chhhHHH---HHHHHHhccChhHHHHHHccCCCCCCC-CC
Q 047113 102 --ET-EPYVWGA---LLGACRIHHNVKIGELVAKDPFHLDPK-ND 139 (145)
Q Consensus 102 --~p-~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 139 (145)
.+ |...|-+ .|....+.|-+.-|+++.+-+..++|. ||
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 22 4444444 457788899999999999999999997 54
No 302
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=58.88 E-value=1.1e+02 Score=25.88 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc-cchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY-SGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~ 79 (145)
-.+.|+.+-..++..|.-..|..+.+.-...+.-++|...+-..-+.|.+ .+.++++..+-.+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai 421 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAI 421 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 34567777777777777777777776632212222244444444444544 344445544444444
No 303
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.84 E-value=77 Score=23.97 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.+++..+..+.++... .| +..+.+..--..-+.|+++.|.+=|.....-+|++| ...||.-+--|.+.
T Consensus 125 e~Dl~g~rsLveQlp~-en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~ 192 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS-EN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSR 192 (459)
T ss_pred cccCcchHHHHHhccC-CC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhh
Confidence 4555566666655442 11 222222222122568999999999998885667776 45677666666655
No 304
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=58.59 E-value=6.8 Score=30.95 Aligned_cols=75 Identities=7% Similarity=-0.041 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc------cchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY------SGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
||.|.++..|+-.+.+.. +=.+| .++..--+-.+-+|++ +.+...+.++-++-. -.-+.|-+.||.
T Consensus 493 y~iL~~cl~Rn~g~~d~~-ik~E~------i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~i-lq~lHPh~~twG 564 (650)
T KOG4334|consen 493 YNILRDCLSRNLGWNDLV-IKKEM------IGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRI-LQKLHPHLLTWG 564 (650)
T ss_pred HHHHHHHHHhhcCCccee-eeeec------cCCCCccceeEeeeccceeeeeeechhHHHHHHHHHH-HHHhCHHhhhHH
Confidence 889999998887775321 11123 2332222223333433 334555666555544 345679999999
Q ss_pred HHHHHHhcC
Q 047113 93 ITVDLLATG 101 (145)
Q Consensus 93 ~li~~~~~~ 101 (145)
+|+.+|++.
T Consensus 565 SlLriYGr~ 573 (650)
T KOG4334|consen 565 SLLRIYGRL 573 (650)
T ss_pred HHHHHhhhh
Confidence 999999998
No 305
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.96 E-value=45 Score=21.03 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=36.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+...+|.+|..|++.+ .++.+..+.. .++......++..|.+.+.++++..++..+.
T Consensus 40 ~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 40 NPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred chhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 4557788888887764 3333344331 1233444557778888888888888777765
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.83 E-value=26 Score=23.02 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=41.5
Q ss_pred hccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 63 SYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
-...++.++..+++.+. +.. .|+ .....--.|--++.+.|+++++++..+.+.+.+|++...
T Consensus 46 ~~~~dv~~GI~iLe~l~-~~~-~~~---------------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 46 RDTEDVQEGIVILEDLL-KSA-HPE---------------RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHhHHHHHHHh-hhc-Ccc---------------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34556778888888887 322 221 011222234467889999999999999999999877643
No 307
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=57.51 E-value=1e+02 Score=24.87 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccH------
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNL------ 88 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------ 88 (145)
...|..++++.+..|-......+.+.+.. ..+.+.. ...-..+-........+....+++.+. .....+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~-~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~-~~~~~~~~~l~~sa 417 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN-KKITPLEAAQLLAVLPHTARYPTEEILKALFELAE-SPEVQKQPYLRESA 417 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhc-CccccccHHHHHHH
Confidence 45788888888888887777777766665 5554422 222222222334445555555555554 44444444
Q ss_pred -HHHHHHHHHHhc
Q 047113 89 -EHYGITVDLLAT 100 (145)
Q Consensus 89 -~~~~~li~~~~~ 100 (145)
..+.+++.-+|.
T Consensus 418 ~l~~~~lv~~~c~ 430 (574)
T smart00638 418 LLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHHhc
Confidence 444455544443
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=56.57 E-value=76 Score=23.22 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC---CCC-cHHHHHHHHHHhhccchHHHHHHHHHHh-------------
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSD---GKP-NNVTFLSILFACSYSGLIEEGIKVFDIM------------- 78 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m------------- 78 (145)
...|.++... +.|+++++....+..+. .- +.+ ...+|........+...+.+.+++.+..
T Consensus 31 ~~~~~al~~l--~~~~~~~~~~~i~~~r~-~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l 107 (352)
T PF02259_consen 31 YSFYRALLAL--RQGDYDEAKKYIEKARQ-LLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSL 107 (352)
T ss_pred HHHHHHHHHH--hCccHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 3445555544 88999988888877654 11 111 1223333333333333333333333222
Q ss_pred ----hhh-cCcCccHHHHHHHHHHHhcC-------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 79 ----VHD-FQLDLNLEHYGITVDLLATG-------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 79 ----~~~-~~~~~~~~~~~~li~~~~~~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
..+ .++.++..+|..++..-.-. .....+|..+.+.+.+.|+++.|...+.++....
T Consensus 108 ~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 108 LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 101 23466777777777433322 2455689999999999999999999999988754
No 309
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.05 E-value=78 Score=23.18 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=18.3
Q ss_pred CCchhhHHHHHHHHHhccChhHHH
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGE 125 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~ 125 (145)
.-|...|..++.||.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 567788888888888888765544
No 310
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=55.38 E-value=15 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHhHhhcCCCCcH
Q 047113 30 GQEREALEAFYLVIHCSDGKPNN 52 (145)
Q Consensus 30 g~~~~A~~~~~~m~~~~~~~p~~ 52 (145)
=+++.|+..|.++..+..++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 38999999999998734455553
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=55.24 E-value=58 Score=21.45 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=57.5
Q ss_pred CchHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH--HHHHHHHHhhccchHHHHHHHH
Q 047113 1 MDDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV--TFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 1 ~~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
++.|.+.|..- .+.....||.=-.++.-.|+.++|+.=+++..+..|-+.-.. .|.---..|...|+-|.|..-|
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DF 138 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADF 138 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhH
Confidence 35678888743 345778999999999999999999999998776456442221 2222233456677888888888
Q ss_pred HHhhhhcC
Q 047113 76 DIMVHDFQ 83 (145)
Q Consensus 76 ~~m~~~~~ 83 (145)
+... +-|
T Consensus 139 e~AA-~LG 145 (175)
T KOG4555|consen 139 EAAA-QLG 145 (175)
T ss_pred HHHH-HhC
Confidence 8776 444
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.51 E-value=79 Score=22.78 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
-...||-|---+...|+++.|.+.|+..-+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 456899999999999999999999999865
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.32 E-value=88 Score=23.24 Aligned_cols=93 Identities=17% Similarity=0.051 Sum_probs=61.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHh-HhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 21 GMIASHAIHGQEREALEAFYLV-IHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
.=|.|++.-++|.+++...-+- +.-..++|.+.-..+++ |++.+....+.++-+.=. +.---.+...|.+++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELy- 163 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELY- 163 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHH-
Confidence 4479999999999998766552 22144666666666666 899999888887777666 222233444588888765
Q ss_pred cCCCchhhHHHHHHHHHhccChhHHHHHH
Q 047113 100 TGETEPYVWGALLGACRIHHNVKIGELVA 128 (145)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 128 (145)
+.+.+.=.|.+++|+++.
T Consensus 164 -----------Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 -----------LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -----------HHHHHhccccHHHHHHHH
Confidence 345555566666666655
No 314
>PRK10941 hypothetical protein; Provisional
Probab=54.07 E-value=84 Score=22.93 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
..+.|-.+|.+.+++++|+++-+.+.. +.|+ ..-+-----.+.+.|++..|..-++....+.--.|+...--..+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 477888999999999999999999866 5564 434443444589999999999988888744444555554444443
Q ss_pred H
Q 047113 97 L 97 (145)
Q Consensus 97 ~ 97 (145)
.
T Consensus 260 ~ 260 (269)
T PRK10941 260 S 260 (269)
T ss_pred H
Confidence 3
No 315
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=53.87 E-value=57 Score=25.77 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=49.0
Q ss_pred CchHHHHhccCCC-----C--chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh-hccchH----
Q 047113 1 MDDAERIFGGIID-----K--NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC-SYSGLI---- 68 (145)
Q Consensus 1 ~~~A~~~f~~m~~-----~--~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~-~~~~~~---- 68 (145)
+++|.+.|+..-. | ...++=-+.-.+.-.++|++|.+.|..+.+++.-. ..+|.-+..+| ...|+.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS--ka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS--KAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhccchhhh
Confidence 3678888885432 1 22344455666788899999999999998734433 33444443333 334445
Q ss_pred ---HHHHHHHHHhh
Q 047113 69 ---EEGIKVFDIMV 79 (145)
Q Consensus 69 ---~~a~~~~~~m~ 79 (145)
++|..+|++..
T Consensus 361 ~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 361 EHKKEAEELFRKVP 374 (468)
T ss_pred hhHHHHHHHHHHHH
Confidence 77888888766
No 316
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.51 E-value=92 Score=23.22 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=68.6
Q ss_pred HHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC---
Q 047113 25 SHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG--- 101 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--- 101 (145)
.....|++.+|..+|+.... ..-. +...--.+..++...|+.+.|..++..+..+.. .........-|..+.+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~-~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ-AAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH-hCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 45678899999999988755 2211 345556778888999999999999988873211 22222222223333322
Q ss_pred ------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 102 ------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 102 ------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.| |...--.+-..+...|+.++|++.+-.+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 556666777888888999988877655444
No 317
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.49 E-value=1.4e+02 Score=25.36 Aligned_cols=100 Identities=14% Similarity=-0.082 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
|-+--+.-+..-|+-.+|.++=.+.+- ||-..|-.=+.+.+..++|++-+++-+.+++=-|+.| ++.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P-------FVe~ 753 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP-------FVEA 753 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh-------HHHH
Confidence 344455666677777777777766543 6777777777777777777666665555442223333 5555
Q ss_pred HhcC---------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 98 LATG---------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 98 ~~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
|.+. -|-..-+.-..++|.+.|++.+|..+.-
T Consensus 754 c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHH
Confidence 5544 1111111146777788888877766543
No 318
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.31 E-value=13 Score=22.98 Aligned_cols=30 Identities=10% Similarity=-0.098 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 104 EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 104 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...-|..|+.-|...|.+++|++++.++..
T Consensus 38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 38 EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 334688899999999999999999998766
No 319
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.94 E-value=21 Score=15.65 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
|+++.+..+|+++... +.-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~--~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK--FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 3456667777776621 223455555444
No 320
>PRK11906 transcriptional regulator; Provisional
Probab=52.77 E-value=1.2e+02 Score=24.16 Aligned_cols=85 Identities=13% Similarity=-0.027 Sum_probs=55.8
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
.|......+-.+..-.|+++.|..+|++... +.|| ...|-..--.+.-+|+.++|.+.+++...-.-...-...--
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 3666666666666778889999999999755 6675 33444444446778899999999988551222222344444
Q ss_pred HHHHHHhcC
Q 047113 93 ITVDLLATG 101 (145)
Q Consensus 93 ~li~~~~~~ 101 (145)
..|+.|+..
T Consensus 413 ~~~~~~~~~ 421 (458)
T PRK11906 413 ECVDMYVPN 421 (458)
T ss_pred HHHHHHcCC
Confidence 555666655
No 321
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.60 E-value=46 Score=23.58 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHhHhhcCCCC-------cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC--
Q 047113 31 QEREALEAFYLVIHCSDGKP-------NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-- 101 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 101 (145)
..+.|..++..|.- +.++. ...-|-.+-++|++.|-+ +.=-.|+ |...+..+++.+...
T Consensus 136 ~vetAiaml~dmG~-~SiKffPM~Gl~~leE~~avA~aca~~g~~---------lEPTGGI--dl~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 136 PIETAIAMLKDMGG-SSVKFFPMGGLKHLEEYAAVAKACAKHGFY---------LEPTGGI--DLDNFEEIVQIALDAGV 203 (236)
T ss_pred eHHHHHHHHHHcCC-CeeeEeecCCcccHHHHHHHHHHHHHcCCc---------cCCCCCc--cHHhHHHHHHHHHHcCC
Confidence 46788888888854 33321 345667778888887754 0001222 445555666655555
Q ss_pred -CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 102 -ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 102 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+.=.+.|+++|+-=...-++++..+++..++
T Consensus 204 ~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 204 EKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred CeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3344677788877667778888888887665
No 322
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=51.47 E-value=91 Score=22.59 Aligned_cols=36 Identities=14% Similarity=-0.044 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 104 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+...-.-|+......|+++-|.++.+.++.++|.+.
T Consensus 219 ~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 219 SRQCALRLLVMALESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccC
Confidence 344556678888889999999999999998887543
No 323
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=50.93 E-value=93 Score=22.54 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCC-----cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKP-----NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.|+.-|.+.|+.+.|-..+--+....+... +...-.-++....+.++|+-+.++.+.++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455677788888888887777765223332 34455677788888899999888888887
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.67 E-value=97 Score=22.65 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc
Q 047113 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS 65 (145)
Q Consensus 4 A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 65 (145)
+..+|.-..+|.+..--.|+.+| ..+++++|.+.++++-+ .|+.|.... +++...+-..
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~-lgysp~Dii-~~~FRv~K~~ 285 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWK-LGYSPEDII-TTLFRVVKNM 285 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHH-cCCCHHHHH-HHHHHHHHhc
Confidence 45567766677776667777765 56789999999999888 999985443 4555555433
No 325
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=50.50 E-value=21 Score=21.47 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=31.0
Q ss_pred HHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 6 RIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 6 ~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
.+++.+...++.+-.-.=...+.....++|..+++.... .| ...|...+++..+
T Consensus 27 ~ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~-KG----~~A~~~F~~~L~e 80 (94)
T cd08329 27 PILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLV-KG----NAAAEVFRNCLKK 80 (94)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHh-hh----HHHHHHHHHHHHh
Confidence 355555555444433333333445556888888887766 44 5566666666643
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=50.03 E-value=60 Score=25.52 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred HHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchh
Q 047113 27 AIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPY 106 (145)
Q Consensus 27 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~ 106 (145)
.-.|+++++.+..+.=.-... .| ....+.++.-.-+.|..+.|.++-..-..+..+-....-...-.+ .++..++..
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~-~a~~~~~~~ 348 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALE-IAKELDDPE 348 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHH-HCCCCSTHH
T ss_pred HHcCChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHH-HHHhcCcHH
Confidence 346677776666541110001 11 334567777777777777777765554322221111111111111 122245667
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.|..|-+...++|+++.|++.+.+...
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 888888888888888888888877654
No 327
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.87 E-value=56 Score=19.92 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHH
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIE 69 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 69 (145)
++......+.+-.|.++++.+++ .+...+..|.=..|+...+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~-~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRK-KGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45566666777788888888887 766667666666667777777653
No 328
>PHA02884 ankyrin repeat protein; Provisional
Probab=49.30 E-value=66 Score=23.86 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=42.5
Q ss_pred cCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH------HHHHHHHHhhccchHHHHHHHH
Q 047113 10 GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV------TFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 10 ~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
.++++|-..+++++.+.++.|+.+-+..++ + .|..|+.. .-.+.++.+++.|+.+-+.-++
T Consensus 24 ~~~~~d~~~~~~lL~~A~~~~~~eivk~LL----~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL 90 (300)
T PHA02884 24 AIKKKNKICIANILYSSIKFHYTDIIDAIL----K-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI 90 (300)
T ss_pred HhhccCcCCCCHHHHHHHHcCCHHHHHHHH----H-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 356778889999999999999977666555 3 77777653 2344555567778776554443
No 329
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.22 E-value=88 Score=21.78 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV-TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYG 92 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ 92 (145)
.+..-+.++..|...|+++.|.++|.-+.. .. ..|.. .|+.=+....+.+.-....++++.|...+.-... ...++
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR-~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~ 117 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIR-CP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYN 117 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHc-CC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhh
Confidence 345678999999999999999999999877 32 33433 5677676677766665555666666532221110 01111
Q ss_pred HH--HHHHhcC----CCch---hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 93 IT--VDLLATG----ETEP---YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 93 ~l--i~~~~~~----~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. .-.+-.. .|.. .-|..+++.-.+....+++.++.++|.+
T Consensus 118 ~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~E 167 (199)
T PF04090_consen 118 RRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDE 167 (199)
T ss_pred hhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 11 1111001 2321 1355555555455566678888888887
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=48.74 E-value=47 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=30.0
Q ss_pred cCCCCcH-HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc
Q 047113 46 SDGKPNN-VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 46 ~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
..++-.. ..+.-+.+-+.+.|+.+.|.+.+.++. +....+
T Consensus 29 n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~ 69 (177)
T PF10602_consen 29 NLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSP 69 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCH
Confidence 3334333 477889999999999999999999988 554333
No 331
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=48.54 E-value=1.4e+02 Score=25.30 Aligned_cols=96 Identities=9% Similarity=-0.073 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH-HHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH-YGITVD 96 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~li~ 96 (145)
+.-.+-.-+.+...+..|.++|..|.. ...+++.....++|++|..+-+... .+.||+.. |.-++-
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhh
Confidence 333334444455666777777777643 1346667778888888887777665 34454322 222221
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...-|--.=++|.+.|+-.+|..+.+.+..
T Consensus 816 -------E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 -------ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -------hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 222344566889999999999999988765
No 332
>PRK11906 transcriptional regulator; Provisional
Probab=48.09 E-value=1.4e+02 Score=23.73 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 87 (145)
...+|.++-+.-.+ .+ .-|......+-.+..-.++++.|...|++.. .+.||
T Consensus 319 ~~~~a~~~A~rAve-ld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn 370 (458)
T PRK11906 319 AAQKALELLDYVSD-IT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTD 370 (458)
T ss_pred HHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCc
Confidence 45566666666554 33 2266666666666677788999999999888 34554
No 333
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=47.57 E-value=63 Score=19.61 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc--hHHHHHHHHHHhhhhcCc
Q 047113 20 SGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG--LIEEGIKVFDIMVHDFQL 84 (145)
Q Consensus 20 ~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~ 84 (145)
..+|.-|...|++++|.+.+.++.. ... .......+|..+.+.+ .-+....++..+. +.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~-~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~-~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKL-PEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLC-QANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCC-Ccc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHH-HcCC
Confidence 4577788899999999999999865 322 2334455666666553 4455677777777 4443
No 334
>PRK04841 transcriptional regulator MalT; Provisional
Probab=46.16 E-value=1.9e+02 Score=24.62 Aligned_cols=109 Identities=9% Similarity=-0.045 Sum_probs=64.5
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHhhccchHHHHHHHHHHhhhhcC-c-Ccc--HHHHHHHH
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNN----VTFLSILFACSYSGLIEEGIKVFDIMVHDFQ-L-DLN--LEHYGITV 95 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~--~~~~~~li 95 (145)
..+...|++++|...+++... .--..+. ...+.+-..+...|+++.|...++....... . .+. ...+..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALA-ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 445679999999999998654 2111121 2445566667789999999999888762111 0 111 12222222
Q ss_pred HHHhcC---------------------CC----chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 96 DLLATG---------------------ET----EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 96 ~~~~~~---------------------~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..+... .+ ....+..+-..+...|++++|...+.+...
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 233222 11 122344455566778999999998887655
No 335
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.13 E-value=1e+02 Score=23.32 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=43.4
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 36 LEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 36 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.++|+.|+. .++.|.-.+|-=+.-..++.=.+..+..+|+.+.++ ..-|..|+..||..
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHH
Confidence 467888887 999998776644444468888888899999998832 22277777777766
No 336
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=44.77 E-value=1.5e+02 Score=23.03 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHHcCChHHHHHHHHHhHhhcC------------CCCcHHHH--HHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHH
Q 047113 25 SHAIHGQEREALEAFYLVIHCSD------------GKPNNVTF--LSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLE 89 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~------------~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~ 89 (145)
.+.+.|..++|..=|+.... .. +.+-...+ -..+..+...|+...+++....+. .++| |..
T Consensus 115 vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll---Ei~~Wda~ 190 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL---EIQPWDAS 190 (504)
T ss_pred hhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH---hcCcchhH
Confidence 34578899999999988755 33 11222222 233445566777777777777776 3555 455
Q ss_pred HHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 90 HYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 90 ~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.|-.=.++|... ..+....--+-.-+...|+.+.++...++-.+++|+.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 555555555544 3344444455566677788888888887777777753
No 337
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=44.72 E-value=67 Score=19.10 Aligned_cols=19 Identities=5% Similarity=-0.116 Sum_probs=10.0
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
+.+..+..+.+.+|+.+..
T Consensus 6 ~tK~rni~eLi~fY~ky~~ 24 (85)
T PF07240_consen 6 ATKIRNIQELIAFYEKYSP 24 (85)
T ss_pred HHHHhhHHHHHHHHHHcCc
Confidence 4445555555555555543
No 338
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=44.70 E-value=39 Score=25.36 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHhhccchHHHHHHHHHHhh
Q 047113 56 LSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
=.+++.|.++|.+++|.+++....
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHH
Confidence 467999999999999999998876
No 339
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=44.08 E-value=26 Score=19.84 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc
Q 047113 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66 (145)
Q Consensus 5 ~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 66 (145)
..+++.+...++.+..-.=.......+.+++.++++.+.. . ...+|...+.++.+.+
T Consensus 16 ~~il~~L~~~~vlt~~e~~~i~~~~~~~~k~~~Lld~l~~-k----g~~af~~F~~~L~~~~ 72 (80)
T cd01671 16 EDVLDHLLSDGVLTEEEYEKIRSESTRQDKARKLLDILPR-K----GPKAFQSFLQALQETD 72 (80)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHh-c----ChHHHHHHHHHHHhcC
Confidence 3455555554444433333333444578888888888776 3 4566677777766555
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.21 E-value=21 Score=27.29 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=27.4
Q ss_pred HHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 112 LGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 112 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
-+-|.++|++++|...+.+-....|.++.+|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~ 135 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHI 135 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchh
Confidence 35688999999999999998889998887764
No 341
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=43.14 E-value=32 Score=21.09 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.8
Q ss_pred hHHHHhccCCC
Q 047113 3 DAERIFGGIID 13 (145)
Q Consensus 3 ~A~~~f~~m~~ 13 (145)
+++++|+.+++
T Consensus 16 ~~~evFeslP~ 26 (99)
T PF08564_consen 16 KAREVFESLPP 26 (99)
T ss_dssp ---HHHHHS-T
T ss_pred hHHHHHHHCCH
Confidence 45677776654
No 342
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.73 E-value=2.1e+02 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 104 EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 104 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
-.-+-.+.|..+.+.+++..|..+..++.+..|..+
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 345677889999999999999999999888766443
No 343
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=42.72 E-value=51 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 58 ILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
++-.|-+.|.+.+..+++++|. ..||..+...|+-.+.-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI-~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELI-EKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHH-HhcCcccHHHHHHHHHH
Confidence 3445667788999999999999 99999998888877653
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.56 E-value=2.3e+02 Score=24.61 Aligned_cols=119 Identities=8% Similarity=0.013 Sum_probs=70.6
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHH-----HhhccchHHHHH--HHHHHhhhhcCc--
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILF-----ACSYSGLIEEGI--KVFDIMVHDFQL-- 84 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~--~~~~~m~~~~~~-- 84 (145)
..++.+.++..+..-.|++++|.....+..+ .--+-|...|..... .+-..|+...+. ..|.....+...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 4778899999999999999999999887655 322345444443332 244555332222 222222211111
Q ss_pred ---CccHHHHHHHHHHHhcC-----------------CCc--h--hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 85 ---DLNLEHYGITVDLLATG-----------------ETE--P--YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 85 ---~~~~~~~~~li~~~~~~-----------------~p~--~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+-..++.-+..++.+. .|. . ..+..|.......|+.++|....+++..
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 12234444555555444 221 1 1233677888999999999999998877
No 345
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=42.37 E-value=54 Score=22.62 Aligned_cols=79 Identities=11% Similarity=0.110 Sum_probs=54.2
Q ss_pred cCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHH
Q 047113 10 GIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 10 ~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
.++.........++.-|...|+.+...++.-.|.- ...=.+-+++.|-+.|.++.-.-++.+.. ..=+.|=..
T Consensus 16 ~i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~------~~LDidq~i~lC~~~~LydalIYv~n~~l-~DYvTPL~~ 88 (196)
T PF12816_consen 16 KIKSLPPEVFKALVEHYASKGRLERLEQLILHLDP------SSLDIDQVIKLCKKHGLYDALIYVWNRAL-NDYVTPLEE 88 (196)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCH------HhcCHHHHHHHHHHCCCCCeeeeeeeccc-cCCcHHHHH
Confidence 34445678899999999999999999998877743 23333567888999998877776666555 333444444
Q ss_pred HHHHHH
Q 047113 90 HYGITV 95 (145)
Q Consensus 90 ~~~~li 95 (145)
.+..+-
T Consensus 89 ll~~i~ 94 (196)
T PF12816_consen 89 LLELIR 94 (196)
T ss_pred HHHHHH
Confidence 444333
No 346
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=42.23 E-value=2e+02 Score=23.99 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=25.4
Q ss_pred CCchhhHH--HHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 102 ETEPYVWG--ALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 102 ~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+|....|+ .+.+.|=+.|+++.|+...+......|.-.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 44444444 456777788888888888887776666433
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.54 E-value=1.9e+02 Score=23.64 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=32.1
Q ss_pred HcCChHHHHHHHHHhHhhcCCCCc-----HHHHHHHHHHh--hccchHHHHHHHHH
Q 047113 28 IHGQEREALEAFYLVIHCSDGKPN-----NVTFLSILFAC--SYSGLIEEGIKVFD 76 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~--~~~~~~~~a~~~~~ 76 (145)
-.|++.+|.....+|.....-.|+ ...+...+.|. -..|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 478899999999998752221222 23333333333 34689999999998
No 348
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=1.4e+02 Score=23.62 Aligned_cols=16 Identities=6% Similarity=0.164 Sum_probs=12.4
Q ss_pred ccchHHHHHHHHHHhh
Q 047113 64 YSGLIEEGIKVFDIMV 79 (145)
Q Consensus 64 ~~~~~~~a~~~~~~m~ 79 (145)
+.|.+..|.+.+.+-+
T Consensus 261 k~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEAL 276 (486)
T ss_pred hccchhHHHHHHHHhh
Confidence 4677888888888777
No 349
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.09 E-value=81 Score=22.15 Aligned_cols=56 Identities=11% Similarity=-0.110 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCC--------------CCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDG--------------KPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~--------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|-.|-+.-+|.+..++++.|.+ ..+ .+--...|.....+-+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 677888889999999999998855 332 23334568888889999999999998874
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.94 E-value=77 Score=18.69 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHcCChHHHHHHHHHh----HhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 25 SHAIHGQEREALEAFYLV----IHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m----~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
-..+.|++.+|.+.+.+. .. .+-.+. ....-.+.......|+.++|...+++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~-~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQ-SNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788999885555443 33 333221 12223344456778999999999998874
No 351
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.91 E-value=1.9e+02 Score=23.25 Aligned_cols=94 Identities=9% Similarity=0.005 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 20 SGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 20 ~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
..|+.-|--.|+..+|.++.+++.. .+=...+.+-+++.+.-+.|+-.....+++..- .....|-+.+-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf-----~sglIT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECF-----KSGLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----hcCceeHHHhhhhhh
Confidence 4688899999999999999998532 111257788999999988888765566655555 334556777888888
Q ss_pred cC----------CCchh-hHHHHHHHHHhccC
Q 047113 100 TG----------ETEPY-VWGALLGACRIHHN 120 (145)
Q Consensus 100 ~~----------~p~~~-~~~~li~~~~~~g~ 120 (145)
|. .|+.. .++..+.-|..+|-
T Consensus 586 RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 586 RVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 77 66664 68888888888873
No 352
>PRK10941 hypothetical protein; Provisional
Probab=39.68 E-value=22 Score=25.90 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..-+.+-.+|.+.++++.|++..+.+..+.|+++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH
Confidence 3567788899999999999999999999999876
No 353
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.59 E-value=69 Score=25.91 Aligned_cols=89 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc
Q 047113 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 7 ~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
++...+-++...=.-++..|.+.|..+.|.++.+.+.. .-+ ...-|...+..+.++|+.+....+-+.+. +..+..
T Consensus 396 lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~-~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-~~~~~~ 471 (566)
T PF07575_consen 396 LLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ-RLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL-EEYCNN 471 (566)
T ss_dssp HGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH-----------------------
T ss_pred HHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH-HHHhcC
Confidence 33333333334445677778888888888888887655 222 34567777888888888877777777666 443333
Q ss_pred cHHHHHHHHHHHh
Q 047113 87 NLEHYGITVDLLA 99 (145)
Q Consensus 87 ~~~~~~~li~~~~ 99 (145)
+.....-+++..+
T Consensus 472 ~~~~~~~ll~~i~ 484 (566)
T PF07575_consen 472 GEPLDDDLLDNIG 484 (566)
T ss_dssp -------------
T ss_pred CCcccHHHHHHhc
Confidence 3333444443333
No 354
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.52 E-value=1.1e+02 Score=19.96 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=40.4
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 39 FYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 39 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
-..+++ .|++++..= -.+++...+.++.-.|.++++.+. +.+...+..|-.--++.+...
T Consensus 9 ~~~lk~-~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 9 IERLKE-AGLRLTPQR-LAVLELLLEADGHLSAEELYEELR-EEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHH-cCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhHHHHHHHHHHHC
Confidence 334445 777766543 456666677777788999999998 666666666655566666655
No 355
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=39.04 E-value=65 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=10.9
Q ss_pred hccchHHHHHHHHHHhhhhcC
Q 047113 63 SYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~~~ 83 (145)
|+.|+...+..+|+... +.|
T Consensus 28 ck~gdcraGv~ff~aA~-qvG 47 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAAL-QVG 47 (639)
T ss_pred HhccchhhhHHHHHHHH-Hhc
Confidence 55555555555555555 444
No 356
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.82 E-value=80 Score=20.96 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=28.4
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.|+...|..++.+|.-..+.+.|+-+|+++..
T Consensus 36 ~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP~ 67 (197)
T KOG4414|consen 36 THDDWPYAIHLAGYFLHDDCDNARFLWKRIPP 67 (197)
T ss_pred CCCcchHHHHHHHHHHhccchhHHHHHHhCCH
Confidence 56777899999999999999999999999764
No 357
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.73 E-value=66 Score=21.36 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=26.5
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 38 AFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 38 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|+.+.. ..+...+..--.-|....+.++|+.|.+++..+.
T Consensus 77 Lfd~ln~-g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 77 LFDHLNN-GKLSKPVVDKLHQLAQALQARDYDAADEIHVDLM 117 (157)
T ss_dssp HHHHHHH-T-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445544 4455555555555556678899999999999988
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=38.63 E-value=62 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=31.1
Q ss_pred CCch-hhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 102 ETEP-YVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 102 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.|+. .+||.|---+...|+++.|.+.|+...+++|..
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 5554 688888888889999999999999999998853
No 359
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=38.48 E-value=1.2e+02 Score=22.05 Aligned_cols=57 Identities=7% Similarity=-0.048 Sum_probs=34.7
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (145)
-.-|-+|++++++..++.++. . .-|..-.-..+.--++-|+++...-+|.+...+.+
T Consensus 18 ~~~CLNr~Fd~vL~~~R~~p~-~--emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~ 74 (267)
T PF05476_consen 18 YLQCLNREFDDVLAELRQIPV-D--EMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRK 74 (267)
T ss_pred HHHHhhhhHHHHHHHHHcCcH-h--HhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcc
Confidence 344567777777777776644 1 23444444455555667777777777777764443
No 360
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.44 E-value=86 Score=20.24 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALE 37 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~ 37 (145)
|..++..|-.|+.+.|++++++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHH
Confidence 55677778888888888776554
No 361
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=1.6e+02 Score=21.66 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 50 PNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 50 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-|...|--+-..|...|+++.|.--++++.
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 362
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=38.22 E-value=40 Score=21.44 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.4
Q ss_pred HcCChHHHHHHHHHhHhhcCCCCcHHHHHH
Q 047113 28 IHGQEREALEAFYLVIHCSDGKPNNVTFLS 57 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 57 (145)
-.|+..+|.++++.++. .|+.|-...|..
T Consensus 9 L~G~~~ra~riL~~L~~-Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQA-EGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH-CCccHHHHHHHH
Confidence 47999999999999999 999998877653
No 363
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=38.04 E-value=40 Score=19.65 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh
Q 047113 5 ERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62 (145)
Q Consensus 5 ~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 62 (145)
..+++.+...++.+-.-.=..-+..-..++|..+++.... .| ...|....++.
T Consensus 18 ~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l~~-kG----~~A~~~F~~~L 70 (82)
T cd08330 18 DPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFVRS-WG----ASCKDIFYQIL 70 (82)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHc-cC----HHHHHHHHHHH
Confidence 3455555554444333222233355678888888887766 44 34444444444
No 364
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=37.86 E-value=74 Score=18.95 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVI 43 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~ 43 (145)
..|+.++++....++.+++..+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 29 (88)
T TIGR02531 3 ELLDELFDAILTLKNREECYRFFDDIA 29 (88)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 468999999999999999999999874
No 365
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=37.51 E-value=44 Score=26.35 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHH---hHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC-----cc
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYL---VIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD-----LN 87 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~---m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~ 87 (145)
..|..|-+.|.-.|+++.|+..-++ +.++.|-+.. -..++.+-.++.-.|+++.|.+.++... .--++ .-
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl-~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL-NLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH-HHHHHhcchhHH
Confidence 4677888888888999999887654 2222554443 3478888889999999999999888655 22111 11
Q ss_pred HHHHHHHHHHHh------cC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LEHYGITVDLLA------TG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~~~~~li~~~~------~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.....+|.+.|. +. .-...++.+|-.+|...|..++|+-+.+.-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222333333332 22 33567888999999999999999887765444
No 366
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.08 E-value=79 Score=19.50 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
.++....+.+.+-.|.++++.|+. .+...+..|.=.-|+...+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRK-KGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHH-TTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhh-ccCCcCHHHHHHHHHHHHHCCe
Confidence 445555555566666677766666 5555554443333444444443
No 367
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=36.53 E-value=1.2e+02 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=42.4
Q ss_pred chHHHHhccCC-C-C---chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHH
Q 047113 2 DDAERIFGGII-D-K---NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFA 61 (145)
Q Consensus 2 ~~A~~~f~~m~-~-~---~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~ 61 (145)
++|.+.|.+|- . | +..+.-.||.++-..+++.++..++..-.. -..+.+ ...|+..+--
T Consensus 276 ~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 276 REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHHHHHHHHH
Confidence 57888888773 2 3 345788999999999999999999998643 333333 4467766643
No 368
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.33 E-value=1.8e+02 Score=21.67 Aligned_cols=86 Identities=12% Similarity=-0.018 Sum_probs=57.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-----hhccchHHHHHHHHHHhhhhcCcCccHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA-----CSYSGLIEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
++.--+.|+..-.+.||.+.|...|++..+ ..-+.|..+++.++.- +...+++..+...+.++.....-.|-..
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 555667788888899999999999998876 5556677777666543 3446677778888877772222222222
Q ss_pred HHHHHHHHHhcC
Q 047113 90 HYGITVDLLATG 101 (145)
Q Consensus 90 ~~~~li~~~~~~ 101 (145)
.--+|+..|...
T Consensus 290 NnKALcllYlg~ 301 (366)
T KOG2796|consen 290 NNKALCLLYLGK 301 (366)
T ss_pred chHHHHHHHHHH
Confidence 233677777655
No 369
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.23 E-value=1.5e+02 Score=20.82 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC---CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 56 LSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG---ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
-+++-.|.+.-+|.+++.+++.|. ...+. |+. ++++.-. .+-...-|.....|.+.|.+|.|..+.++-.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~-el~i~-----ft~-LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLH-ELQIH-----FTS-LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhh-----hhh-ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 456777888889999999999888 54433 222 2222211 3444566888899999999999999998644
Q ss_pred C
Q 047113 133 H 133 (145)
Q Consensus 133 ~ 133 (145)
-
T Consensus 209 W 209 (233)
T PF14669_consen 209 W 209 (233)
T ss_pred e
Confidence 3
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.01 E-value=1e+02 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=20.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+++..-..|..+|.+.+|.++.++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45566677888888988888888887
No 371
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.45 E-value=1.4e+02 Score=20.01 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=25.6
Q ss_pred cCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 46 SDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 46 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.|++++..-- .++......+..-.|.++++.+. ..+...+..|-.--|+.+.+.
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHC
Confidence 5555544332 23333333333445666666666 455455544444444444444
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.39 E-value=1.7e+02 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=16.9
Q ss_pred hccChhHHHHHHccCCCCCCCCC
Q 047113 117 IHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 117 ~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..|-++++.-.|+++..+.|...
T Consensus 403 ~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHhHHHHHHHHHHHHhccCChhc
Confidence 34778888888888888765443
No 373
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.94 E-value=59 Score=15.67 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=13.3
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFY 40 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~ 40 (145)
.+--.+-+.|++++|.++|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44556667888888888843
No 374
>PF05373 Pro_3_hydrox_C: L-proline 3-hydroxylase, C-terminal; InterPro: IPR008035 Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 1E5S_A 1E5R_B.
Probab=34.89 E-value=1.1e+02 Score=18.81 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHhhhhcCcCccHHHHHHHHHHHhcC-----CCchhhHHHHHHHHHhccChh
Q 047113 76 DIMVHDFQLDLNLEHYGITVDLLATG-----ETEPYVWGALLGACRIHHNVK 122 (145)
Q Consensus 76 ~~m~~~~~~~~~~~~~~~li~~~~~~-----~p~~~~~~~li~~~~~~g~~~ 122 (145)
+.+. ..+-..+..+|.-++..++|. .+-..+|.+|+..+.+.|+..
T Consensus 31 e~Ll-~ls~vis~~n~r~i~~~LaK~Hf~~d~~~~~~yDWL~eia~rsGD~a 81 (101)
T PF05373_consen 31 ERLL-ALSAVISRENFRDIVFLLAKVHFTRDAHPAEAYDWLIEIARRSGDPA 81 (101)
T ss_dssp HHHH-GGGGT--TTTHHHHHHHHCCHHHHEES-TTHHHHHHHHHHHHCT-HH
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHcCCHH
Confidence 4444 344466777888888888887 666789999999999999964
No 375
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.83 E-value=2.5e+02 Score=22.81 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCC
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK 49 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~ 49 (145)
....|+.++++....|-.+...-+.+.+.. ..+.
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~-~~~~ 410 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS-KKLT 410 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT-T-S-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCC
Confidence 345677777777777766666555555544 3443
No 376
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.69 E-value=67 Score=19.02 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHH
Q 047113 7 IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72 (145)
Q Consensus 7 ~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 72 (145)
+++.+-+.++.|-.-.=..-++..+.++|..+.+.... . ....|.+..++.-+.|.-+-|.
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~t-r----G~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILT-K----DNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHh-c----CHHHHHHHHHHHHhcCChHHHH
Confidence 34444444444444444444566678888888887766 3 4456666666665555444443
No 377
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.08 E-value=2.6e+02 Score=22.82 Aligned_cols=109 Identities=11% Similarity=-0.108 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-..|+.-|.+.+++++|..++..|. .+..+ .-...+.+++..-+...-++.+..++.... .=..|....-...+
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smn--W~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg-sF~ap~rpl~~~~~ 486 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMN--WNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG-SFYAPTRPLSDATV 486 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC--ccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh-hccCCCcCccHHHH
Confidence 35578889999999999999999996 33332 223445555555666555555666666652 11223222222222
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
.-|... -..--.=.....-|.+++++|+.+.-++
T Consensus 487 ~ey~d~--V~~~aRRfFhhLLR~~rfekAFlLAvdi 520 (545)
T PF11768_consen 487 LEYRDP--VSDLARRFFHHLLRYQRFEKAFLLAVDI 520 (545)
T ss_pred HHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 222221 0000111344555677888887665544
No 378
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.04 E-value=1.8e+02 Score=21.95 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHHhccCCCCchhhHHH-----------HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhh
Q 047113 5 ERIFGGIIDKNVVIWSG-----------MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63 (145)
Q Consensus 5 ~~~f~~m~~~~~~~~~~-----------li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 63 (145)
..++.++..||++-|-. +.--||.+||.....+.|++= ...-|-...|-.+...|.
T Consensus 69 i~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~q---kr~ipE~~Vwk~f~QL~~ 135 (375)
T KOG0591|consen 69 ISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQ---KRLIPEKTVWKYFVQLCR 135 (375)
T ss_pred HHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhc---cccCchHHHHHHHHHHHH
Confidence 34666777788875433 455678899999998888763 556778888877776664
No 379
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=1.7e+02 Score=23.11 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHh--hcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIH--CSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
|..=-+-..++|.+.+|.++|.+-.. .+..+|+..-|-..-....+.|..++|..-.++..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 33444556789999999999998643 02345555566666666777888888877666665
No 380
>COG5210 GTPase-activating protein [General function prediction only]
Probab=32.42 E-value=1.8e+02 Score=23.11 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 35 ALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 35 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.-+++..|.. .|+.+...++--++....+...++.+..+++.+. -.|+.--...+-+++......
T Consensus 361 ~p~l~~hl~~-~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf-~eg~~~l~~~~~~~l~~~~~~ 425 (496)
T COG5210 361 DPELYEHLLR-EGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLF-LEGSSMLFQLALAILKLLRDK 425 (496)
T ss_pred HHHHHHHHHH-cCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhhh
Confidence 3467777888 8999999999999999999999999999999998 777776666666655544433
No 381
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=31.99 E-value=99 Score=17.36 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=11.8
Q ss_pred HHHHHHHHhHhhcCCCCcHH--HHHHHHHHh
Q 047113 34 EALEAFYLVIHCSDGKPNNV--TFLSILFAC 62 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~ 62 (145)
++...++.|.. .|+.-..+ +.+.|++.|
T Consensus 10 R~daA~dam~~-lG~~~~~v~~vl~~LL~lY 39 (65)
T PF10440_consen 10 RIDAALDAMRQ-LGFSKKQVRPVLKNLLKLY 39 (65)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 33344444444 45443322 334444444
No 382
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.57 E-value=82 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL 56 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 56 (145)
-|+..|...|-.+.|..+|..+.- ..++-|...|.
T Consensus 222 lLvrlY~~LG~~~~A~~~~~~L~i-K~IQ~DTL~h~ 256 (365)
T PF09797_consen 222 LLVRLYSLLGAGSLALEHYESLDI-KNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcCh-HHHHHHHhHHH
Confidence 455666667777777777766655 55555555443
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.39 E-value=3e+02 Score=22.66 Aligned_cols=48 Identities=2% Similarity=-0.055 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 51 NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
|....-+++..++++..+.-.+.+..+|. ..| .+-..|-.++++|..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVL-EYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHH-Hhc--chHHHHHHHHHHHHhc
Confidence 44444555555555555555555555555 222 2333344444444444
No 384
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.05 E-value=1.4e+02 Score=19.68 Aligned_cols=42 Identities=10% Similarity=-0.045 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA 61 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 61 (145)
|-..++ -+.+.|...+...+.++|.+ .|+..+...|+-.+.-
T Consensus 112 tlGvL~-~ak~kgLisk~Kpild~LI~-~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLA-LAKSKGLISKDKPILDELIE-KGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHH-HHHHcCcccchHHHHHHHHH-hcCcccHHHHHHHHHH
Confidence 344444 44577899999999999998 9999999999877643
No 385
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=30.88 E-value=2.3e+02 Score=21.90 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=44.4
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHH---HHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVT---FLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++.++++++.. .-.|.+.|-+++.+.++..+|..=+-.+.. . +|.+.+ ....+..-.-.++.|...+.++.|.
T Consensus 147 ~~~e~lEe~~g-~~iT~e~L~da~~r~N~~rea~~k~~kL~~-~--~P~plsg~D~~~~~~~~~~~~d~d~~~~~l~~l~ 222 (379)
T COG1775 147 KFKELLEELTG-NEITEEKLRDAIARYNRLREALAKLYKLAK-H--KPSPLSGSDAFNVMAFAVFLRDKDAFIEELEELI 222 (379)
T ss_pred HHHHHHHHHhC-CcccHHHHHHHHHHHHHHHHHHHHHHhhhc-c--CCCCCchhHHHHHhhHHHHhcchHHHHHHHHHHH
Confidence 34444444433 457899999999999999999888877755 3 443332 2222222223455666666666555
No 386
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.00 E-value=1.5e+02 Score=18.89 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHH
Q 047113 33 REALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 33 ~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+++.++|..|.. .|+-.. +.-|...-..+-..|++..|.++|+
T Consensus 80 ~dp~~if~~L~~-~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYS-KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777776 665543 3344555555566777777777765
No 387
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=29.95 E-value=42 Score=19.17 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=39.1
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHH
Q 047113 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73 (145)
Q Consensus 4 A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 73 (145)
...+++.+.+.++.+..-.=.........+++..+++.... . ....|..++.+..+ ++..-+..
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~~~t~~~k~~~LLd~l~~-k----g~~a~~~F~~~L~~-~~~~La~~ 81 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRSEPTRQDKARKLLDILKR-K----GPEAFDIFCQALRE-NQPHLADD 81 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHTSSSHHHHHHHHHHHHHH-C----CHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHccCChHHHHHHHHHHHHH-H----CHHHHHHHHHHHHh-hCHHHHHH
Confidence 34555666555665555544444566677788888888776 3 45666667766666 54444443
No 388
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.37 E-value=1.1e+02 Score=17.04 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=24.5
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhh
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 63 (145)
|...-++-|+..+++..-.++++..+.+... .|. .+..+|.--+...+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~-~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQ-RGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CCHHHHHHHHHHHH
Confidence 3444556666666666666666666666655 443 23344444333333
No 389
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.08 E-value=3.7e+02 Score=24.40 Aligned_cols=107 Identities=10% Similarity=-0.138 Sum_probs=56.2
Q ss_pred CchhhHHHHHHHH----HHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHH
Q 047113 14 KNVVIWSGMIASH----AIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 14 ~~~~~~~~li~a~----~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
+|...+.....+| .+.+.+++|.-.|+..-+ .--.+.++-.+|+|+++..+..++. . +-..-..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~-~-~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLS-E-GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhc-C-CHHHHHH
Confidence 4555555444444 356677777777765432 1234677788888888888887776 1 1111122
Q ss_pred HHHHHHHHHhcC-CC---------chhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 90 HYGITVDLLATG-ET---------EPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 90 ~~~~li~~~~~~-~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+--.|+.-+... +| -.-...-.+..+|+...+++|+++.....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 223344333333 00 00112334555666666677766655444
No 390
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.00 E-value=1.1e+02 Score=17.85 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHHh---HhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 29 HGQEREALEAFYLV---IHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 29 ~g~~~~A~~~~~~m---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
.|+.++|+.+|+.- .. .|+..... ..+....|+.|.++-+.|.+
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~-eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELE-EGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHH-HHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 58899999998863 22 33332222 34666789999999999983
No 391
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=27.57 E-value=96 Score=15.81 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLV 42 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m 42 (145)
+..+|..+..-+-.++....+++.|++.
T Consensus 14 ~~~~~~eI~~Yle~~~~~~~~~~~fd~a 41 (46)
T PF06855_consen 14 QETDFDEISSYLESNYDYLESMEIFDRA 41 (46)
T ss_dssp T-SSHHHHHHHHHCHCCHHCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 4556666666666666666666666554
No 392
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.55 E-value=2e+02 Score=19.47 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=6.7
Q ss_pred cHHHHHHHHHHHhc
Q 047113 87 NLEHYGITVDLLAT 100 (145)
Q Consensus 87 ~~~~~~~li~~~~~ 100 (145)
+..+...++.-+.+
T Consensus 133 n~~~L~~L~~~L~~ 146 (190)
T cd04400 133 NYDLLYVLFSFLRK 146 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.28 E-value=2.8e+02 Score=21.01 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhh----hcCcCccH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVH----DFQLDLNL 88 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~ 88 (145)
++..-.+|..+|.+.+|..+-+.... +.| +...+-.++..++..|+--.+..-++++.. ..|+.-+-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 34445788899999999999988755 344 677888899999999986666666666552 34555443
No 394
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=27.11 E-value=3e+02 Score=21.31 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=25.5
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhh
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 63 (145)
.|+-++|+.++..... ..-.++..+|..+-..|.
T Consensus 195 ~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 195 PGDREKALQILLPVLE-SDENPDPDTLGLLGRIYK 228 (374)
T ss_pred CCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHH
Confidence 8899999999988655 556677888777665553
No 395
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=26.71 E-value=2.6e+02 Score=20.42 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC---cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP---NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
...+|..+...+.+.|.++.|...+.++.. .+... +....-.-.+..-..|+-+.|...++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446799999999999999999999999865 44222 22233333444566677788888887777
No 396
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=26.65 E-value=1.5e+02 Score=17.79 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=26.8
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHH
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
.-|-+.|..+++.++++.-++..|-. .|...|+.+.-.++.-..|+.+
T Consensus 40 ~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 40 YEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHH
Confidence 34556666777777776654423333 4555666666555555555544
No 397
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.32 E-value=2.8e+02 Score=24.07 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHH----HHHHHHHhhhhcCcCccHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE----GIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+--++..+.+..+++++..+-+.... . ++.-|-.+++.+++.+.++. ..++++.+..+..++| ..+
T Consensus 708 ~~dl~~~~~q~~d~E~~it~~~~~g~-~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp-----l~V 777 (933)
T KOG2114|consen 708 GQDLMLYFQQISDPETVITLCERLGK-E----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP-----LHV 777 (933)
T ss_pred hHHHHHHHHHhhChHHHHHHHHHhCc-c----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH-----HHH
Confidence 34577888888999999998887654 2 78889999999999886554 4555555553344444 245
Q ss_pred HHHHhcC
Q 047113 95 VDLLATG 101 (145)
Q Consensus 95 i~~~~~~ 101 (145)
++.+++.
T Consensus 778 L~~Lakn 784 (933)
T KOG2114|consen 778 LQILAKN 784 (933)
T ss_pred HHHHhcC
Confidence 6677776
No 398
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=26.18 E-value=1.1e+02 Score=18.42 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=31.2
Q ss_pred CCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhh
Q 047113 11 IIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACS 63 (145)
Q Consensus 11 m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 63 (145)
+-..++.|-+-.=..-+...+.++|..+++.++. .| ...|....++..
T Consensus 30 L~~~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~-RG----~~AF~~F~~aL~ 77 (94)
T cd08327 30 LYQEGILTESHVEEIESQTTSRRKTMKLLDILPS-RG----PKAFHAFLDSLE 77 (94)
T ss_pred HHhCCCCCHHHHHHHHccCChHHHHHHHHHHHHh-hC----hhHHHHHHHHHH
Confidence 4445566666555556677788889888888877 44 445555555553
No 399
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=25.75 E-value=10 Score=22.35 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=8.1
Q ss_pred CchhhHHHHHHHHHhccCh
Q 047113 103 TEPYVWGALLGACRIHHNV 121 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~ 121 (145)
.+..+|...|++|++.|.+
T Consensus 22 k~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 22 KNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp TTTTB------TTSS--EE
T ss_pred cccceeeeeecccccceEE
Confidence 4667888888888888865
No 400
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.87 E-value=3.1e+02 Score=20.70 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCChH---HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHH
Q 047113 20 SGMIASHAIHGQER---EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 20 ~~li~a~~~~g~~~---~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
..++..+.+.++.. +|..+++.... .. +-|...=-.++..|...|..+.|..+|..+. -..++-|..
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~-~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~-iK~IQ~DTL 253 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALK-KS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLD-IKNIQLDTL 253 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC-hHHHHHHHh
Confidence 35556565556544 66667766544 22 2345555677888999999999999999887 545554433
No 401
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.78 E-value=2.8e+02 Score=21.28 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 31 QEREALEAFYLVIHCSDGKPNN----VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
-.+++...+..+.. -.|++ .-|..+.......|.++....+|+... ..|-+|=...-.++++.+-
T Consensus 118 p~eei~~~L~~li~---~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi-~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIK---NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI-LAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH
Confidence 44577777776654 23443 456777777788888888888888887 7788887777777777766
No 402
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.76 E-value=1.7e+02 Score=17.57 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=33.9
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 37 EAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 37 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
++|+-.+. .|+.-|...|-++++...-+=--+...++++.|..
T Consensus 29 EL~ELa~~-AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQL-AGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHH-hCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 78877777 88888888888888877777777777777777763
No 403
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.75 E-value=2.2e+02 Score=19.02 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDL 97 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~ 97 (145)
|..++..-.+......++.++++.+. -. ..-.-|.-|.+.|+++.+...+.+.+.-.+-.. ....+..+.+-
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f----lF---~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF----LF---NLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH----HH---HhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44444444445555555555555433 11 112455666777888887777777663222111 22333322221
Q ss_pred HhcC--CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 98 LATG--ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 98 ~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.-+. .--...|..|...- ...++...++..+.+++++..+
T Consensus 133 ve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dP 174 (182)
T PF15469_consen 133 VEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDP 174 (182)
T ss_pred HHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCH
Confidence 1111 00001122222111 4567777777777776664433
No 404
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=24.56 E-value=2.4e+02 Score=19.44 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHcCChHHH-------HHHHHHhHhhcCCCCcH-HHHHHHHHHhhccch----HHHHHHHHHHhhhh--
Q 047113 16 VVIWSGMIASHAIHGQEREA-------LEAFYLVIHCSDGKPNN-VTFLSILFACSYSGL----IEEGIKVFDIMVHD-- 81 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A-------~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~-- 81 (145)
..-|...+.-.++.....++ ..-|++... +.|+- .++..+-.++...+. ..++..+|+.....
T Consensus 28 L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 28 LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34588877777776654444 444444433 66753 466666556555442 23444444444311
Q ss_pred --cCcCccHHHHHHHHHHHhcC
Q 047113 82 --FQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 82 --~~~~~~~~~~~~li~~~~~~ 101 (145)
...+|+-.+|+.-+.+..+.
T Consensus 105 kAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 105 KAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHhcCCCcHHHHHHHHHHHhh
Confidence 13678777777777766655
No 405
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.38 E-value=5.5e+02 Score=23.42 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=26.5
Q ss_pred CccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 85 DLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 85 ~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.|+...+.....+|++.-.+...|+-..-.|.+.|+.++|+..+++
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~ 977 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKE 977 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHH
Confidence 5777888888888887722333333344455555555555555543
No 406
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.24 E-value=1.6e+02 Score=17.25 Aligned_cols=43 Identities=2% Similarity=-0.160 Sum_probs=23.9
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC
Q 047113 35 ALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 35 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (145)
...+++.+.+ .|+- +....-.+ -+.....+++..+++.+. ..|
T Consensus 18 ~~~v~~~L~~-~~Vl-t~~~~e~I---~~~~tr~~q~~~LLd~L~-~RG 60 (84)
T cd08326 18 PKYLWDHLLS-RGVF-TPDMIEEI---QAAGSRRDQARQLLIDLE-TRG 60 (84)
T ss_pred HHHHHHHHHh-cCCC-CHHHHHHH---HcCCCHHHHHHHHHHHHH-hcC
Confidence 3456666666 5533 33222222 234556777888888877 444
No 407
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=23.62 E-value=1.1e+02 Score=17.58 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=24.5
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 34 EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
.+.++|..|.+...+.|+.. ..+.+.+...|..|-...+.+.
T Consensus 38 ~~~dlf~~Le~~~~i~~~nl--~~L~~lL~~i~R~DL~~~i~~~ 79 (84)
T PF01335_consen 38 SGLDLFEELEKRGLISPDNL--SLLKELLKRIGRPDLLKKIEEY 79 (84)
T ss_dssp SHHHHHHHHHHTTSSSTTBH--HHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCccH--HHHHHHHHHhCHHHHHHHHHHH
Confidence 47889999887233455433 4455555666666666655543
No 408
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=23.43 E-value=1e+02 Score=18.23 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=20.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.-+.|+..|....-++.+..+|+.|-
T Consensus 47 La~lLv~~y~~~~A~~~t~~if~~mn 72 (86)
T cd08320 47 LAELLVEHYGGQQAWDVTLSIFEKMN 72 (86)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHC
Confidence 34677777888888888888888886
No 409
>TIGR02671 cas_csx9 CRISPR-associated protein (provisional), Csx9 family. Members of this family, so far, are archaeal proteins found in CRISPR-associated (cas) gene regions. So far, this rare cas protein is found in only three genomes: Pyrococcus horikoshii shinkaj OT3, Pyrococcus abyssi GE5, and Thermococcus kodakarensis KOD1. In each case it is found immediately upstream of cas3 in loci that resemble the Apern type but lack Csa1 and Csa4 genes.
Probab=22.93 E-value=2.8e+02 Score=20.56 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=9.4
Q ss_pred cCCCCcHHHHHHHHHH
Q 047113 46 SDGKPNNVTFLSILFA 61 (145)
Q Consensus 46 ~~~~p~~~~~~~ll~~ 61 (145)
.|+.||..++.-.+..
T Consensus 8 ag~epd~~~lad~~e~ 23 (377)
T TIGR02671 8 AGLEPDPEELADALEG 23 (377)
T ss_pred cCCCCChHHHHHHHHH
Confidence 5666666666555533
No 410
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.83 E-value=2.1e+02 Score=19.48 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=9.2
Q ss_pred HhccCCCC--chhhHHHHHHHH
Q 047113 7 IFGGIIDK--NVVIWSGMIASH 26 (145)
Q Consensus 7 ~f~~m~~~--~~~~~~~li~a~ 26 (145)
.|.++++| +...|+.++.++
T Consensus 76 flreLpepLi~~~~~~~~~~~~ 97 (192)
T cd04402 76 FLRNIPGSLLSSDLYEEWMSAL 97 (192)
T ss_pred HHHhCCCccCCHHHHHHHHHHH
Confidence 44445443 333455555544
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.77 E-value=3.8e+02 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHhhccchHHHHHHHHHHhhhhcC--cCccHHHHHHHHHHHhcC
Q 047113 57 SILFACSYSGLIEEGIKVFDIMVHDFQ--LDLNLEHYGITVDLLATG 101 (145)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~ 101 (145)
+++.+|...|++-++.++++.+. +.+ -+.=...||..|....+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~-~~~~~~k~~l~~~nlyi~~~~q~ 78 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI-DHNKGDKILLPMINLYIREIIQR 78 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cCCcCCeeehhHHHHHHHHHHhc
Confidence 89999999999999999999887 432 222234455555544444
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=22.73 E-value=2.1e+02 Score=18.03 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=42.4
Q ss_pred hHHHHhccCCC-CchhhHHHH--HHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGIID-KNVVIWSGM--IASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~~-~~~~~~~~l--i~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|..+-+.+.. ++...--+| +..+.+.|++++|+.. - . ..-.||...|.++- -.+.|.-+++..-+.++.
T Consensus 24 EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~--~--~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 24 EANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLL--P--Q-CHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHH--H--T-TS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHh--c--c-cCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 45555555543 222222233 3556678888888221 1 2 33468888887664 457777777777777776
Q ss_pred hhcCcCccHHHH
Q 047113 80 HDFQLDLNLEHY 91 (145)
Q Consensus 80 ~~~~~~~~~~~~ 91 (145)
..| .|....|
T Consensus 97 -~~g-~~~~q~F 106 (116)
T PF09477_consen 97 -SSG-SPELQAF 106 (116)
T ss_dssp -T-S-SHHHHHH
T ss_pred -hCC-CHHHHHH
Confidence 333 4444433
No 413
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.63 E-value=3.9e+02 Score=21.05 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHcC-ChHHHHHHHHHhH-hhcCCCCcHHHH-HHHHHHhh
Q 047113 16 VVIWSGMIASHAIHG-QEREALEAFYLVI-HCSDGKPNNVTF-LSILFACS 63 (145)
Q Consensus 16 ~~~~~~li~a~~~~g-~~~~A~~~~~~m~-~~~~~~p~~~~~-~~ll~~~~ 63 (145)
..-|..+|+.|=+.| +++.+..+++.+. +...-.|++..- -+|+++|.
T Consensus 23 ~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~ 73 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACV 73 (462)
T ss_pred cccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 345888888887765 5677777776633 312234444432 33444443
No 414
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=22.41 E-value=42 Score=17.65 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHhHhhcCCCCc
Q 047113 30 GQEREALEAFYLVIHCSDGKPN 51 (145)
Q Consensus 30 g~~~~A~~~~~~m~~~~~~~p~ 51 (145)
-+++.|...|..+.....++|+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CC
T ss_pred CCHHHHHHHHHHHHHcCCCChH
Confidence 3888999999998872335554
No 415
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.15 E-value=5.2e+02 Score=22.36 Aligned_cols=86 Identities=14% Similarity=0.001 Sum_probs=45.4
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH------HHhhccchHHHHHHHHHHhhhhcCc---
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL------FACSYSGLIEEGIKVFDIMVHDFQL--- 84 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~m~~~~~~--- 84 (145)
|.+.-|..|-.+..+.-.++-|...|-+...-.|++.--.--++.- ..-+--|.+++|+.++-.|- +..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-rrDLAie 768 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-RRDLAIE 768 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-hhhhhHH
Confidence 5566788777777777777777777776653244432111101100 11123566777777776665 3322
Q ss_pred -CccHHHHHHHHHHHhc
Q 047113 85 -DLNLEHYGITVDLLAT 100 (145)
Q Consensus 85 -~~~~~~~~~li~~~~~ 100 (145)
...+.-|-.+.+.+..
T Consensus 769 lr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred HHHhhhhHHHHHHHHHc
Confidence 2234445555555544
No 416
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.97 E-value=1.9e+02 Score=18.73 Aligned_cols=45 Identities=7% Similarity=-0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcC---CCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 90 HYGITVDLLATG---ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 90 ~~~~li~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
-|.-.|+.+-.. .+|.+. .++|-=+...|+++.|+.+.+...+.+
T Consensus 31 ~Y~p~v~g~L~~g~g~qd~Vl-~~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 31 KYLPWVEGVLASGSGAQDDVL-MTVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hHHHHHHHHHHcCCCCcCchH-HhhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 477778888766 455443 345555678999999999999887744
No 417
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=21.68 E-value=1.8e+02 Score=17.20 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 48 GKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 48 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+.|+...||-.++.....+.+.-|..++.+..
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 45666666666666666666555555444444
No 418
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=21.66 E-value=1.1e+02 Score=17.10 Aligned_cols=37 Identities=19% Similarity=0.041 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGI 72 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 72 (145)
+.+.|.++++.+.. +| ..++.....+..+.|..+.+.
T Consensus 31 ~i~~a~~ll~~l~~-~~----~~a~~~~~~vL~~~~~~~la~ 67 (69)
T cd08304 31 QISAANELLNILES-QY----NHTLQLLFALFEDLGLHNLAR 67 (69)
T ss_pred HhhHHHHHHHHHHH-hC----cchHHHHHHHHHHcCCHhHHh
Confidence 33478888888876 55 556667777777777766554
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.55 E-value=3.7e+02 Score=20.39 Aligned_cols=107 Identities=8% Similarity=-0.034 Sum_probs=66.4
Q ss_pred HHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHH-------HHHHHHhhccchHHHHHHHHH----HhhhhcCcCccHHHH
Q 047113 23 IASHAIHGQEREALEAFYLVIHCSDGKPNNVTF-------LSILFACSYSGLIEEGIKVFD----IMVHDFQLDLNLEHY 91 (145)
Q Consensus 23 i~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-------~~ll~~~~~~~~~~~a~~~~~----~m~~~~~~~~~~~~~ 91 (145)
-+-..+.+++++|...+.+... .|+..|..+- .-+.+.|.+.|+...-.+... .|. +..-.-....-
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~-~ftk~k~~Kii 87 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAME-DFTKPKITKII 87 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH-HhcchhHHHHH
Confidence 3445678899999999999988 8887776544 456677777776643322222 222 22223345555
Q ss_pred HHHHHHHhcC------------------CCc------hhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 92 GITVDLLATG------------------ETE------PYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 92 ~~li~~~~~~------------------~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
.+||..+... ... ..-=..+|-.+-+.|++.+|+.+..-+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666665544 000 011245677888899999998877653
No 420
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.35 E-value=5.5e+02 Score=25.32 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHhccCCCCchhh-----------HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHH
Q 047113 5 ERIFGGIIDKNVVI-----------WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIK 73 (145)
Q Consensus 5 ~~~f~~m~~~~~~~-----------~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 73 (145)
..++..|.+||.+. .-.-|--....|++..|..+|+++.+ .+ ++...+++-+++..-..+.++...-
T Consensus 1427 q~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q-~~-p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1427 QNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQ-KD-PDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhc-CC-CccccchhhHHHhhhcccchhHHHh
Q ss_pred HHHHhhhhcCcCccHHHHHHH
Q 047113 74 VFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 74 ~~~~m~~~~~~~~~~~~~~~l 94 (145)
..+-.. .+..+....|+++
T Consensus 1505 ~~dg~~--~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1505 HLDGLI--INRSEEVDELNSL 1523 (2382)
T ss_pred hhcchh--hccCHHHHHHHHH
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.19 E-value=4.8e+02 Score=21.57 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 108 WGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 108 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
+--+-.-|..+.++++|.++...+.+.+.
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 33444667888888999998887766443
No 422
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=21.15 E-value=64 Score=18.85 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=34.1
Q ss_pred HHhccCCCCchhhHHHHHHHHHHc-CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc
Q 047113 6 RIFGGIIDKNVVIWSGMIASHAIH-GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG 66 (145)
Q Consensus 6 ~~f~~m~~~~~~~~~~li~a~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 66 (145)
.+++.+.+.++.+..-+=...... ...++|..+.+.+.. .| ...+..++++....+
T Consensus 20 ~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~-KG----~~A~~iF~~~L~~~d 76 (83)
T cd08325 20 GLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTE-KG----QEAGQIFIKHLLNRD 76 (83)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHH-Hh----HHHHHHHHHHHHhcC
Confidence 456666665555555433334433 378999999988877 43 455666666655544
No 423
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=69 Score=26.11 Aligned_cols=60 Identities=5% Similarity=-0.056 Sum_probs=35.8
Q ss_pred HHHHHhhhhcCcCccHHHHH-----HHHHHHhcC----------CCchhhHHH---HHHHHHhccChhHHHHHHccCCC
Q 047113 73 KVFDIMVHDFQLDLNLEHYG-----ITVDLLATG----------ETEPYVWGA---LLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~----------~p~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+++.+. .-|+.|+..||+ .+++.|.+. .|.-..-.- =+..-+|...+|+-+++|++|.+
T Consensus 254 ~IleDl~-~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 254 VILEDLS-LLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred HHHHHHH-HhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhc
Confidence 3444554 567777776655 466666555 111111111 13345778899999999999887
No 424
>PHA00425 DNA packaging protein, small subunit
Probab=20.82 E-value=2e+02 Score=16.96 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-------CCchhhH
Q 047113 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-------ETEPYVW 108 (145)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------~p~~~~~ 108 (145)
+.+.|++++..++ + .-..+...||++-+.+.|. .||..+.
T Consensus 14 DTE~a~~mL~DL~-d-dekRtPQLYnAIgKlL~RHkF~isKl~pD~~iL 60 (88)
T PHA00425 14 DTEMAQRMLADLK-D-DEKRTPQLYNAIGKLLDRHKFQISKLQPDENIL 60 (88)
T ss_pred hHHHHHHHHHHhc-C-ccccChHHHHHHHHHHHHhcccccccCCcHHHH
Confidence 3456666666666 2 2245677788877777766 6776643
No 425
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.76 E-value=4.8e+02 Score=22.31 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHcCC--hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQ--EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 18 ~~~~li~a~~~~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
.+++.-.||.+.++ +-+...=+++|++ .|-.|+..-. -..|+-.|.+.+|..+|.
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~-rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKK-RGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHh-cCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 45666667766554 4455555667777 7777776543 233455555555555554
No 426
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=20.31 E-value=1.3e+02 Score=18.20 Aligned_cols=19 Identities=26% Similarity=0.050 Sum_probs=15.5
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
.++.|++++|.+++++-.+
T Consensus 25 ~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 25 AAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4689999999999887654
No 427
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.30 E-value=2.6e+02 Score=18.23 Aligned_cols=40 Identities=13% Similarity=-0.088 Sum_probs=32.4
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC 62 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 62 (145)
+|....+.+.+..+.++++.+++ .|+..+..|..-.+.-.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~-~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKA-EGIEVTQATVSRDLREL 45 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-hCCCcCHHHHHHHHHHc
Confidence 56667788888999999999988 99999888887766544
No 428
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.24 E-value=1.9e+02 Score=16.54 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
.++..+ .+++++++...+.++.. .|+.++... +.+......
T Consensus 10 ~i~~~~-~~~~~~~~~~~~~~l~~-~G~s~~~Il-~~l~~~l~~ 50 (89)
T PF08542_consen 10 EILESC-LNGDFKEARKKLYELLV-EGYSASDIL-KQLHEVLVE 50 (89)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHHHH-TT--HHHHH-HHHHHHHHT
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH-cCCCHHHHH-HHHHHHHHH
Confidence 444444 34599999999999988 688776543 344444444
No 429
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=20.21 E-value=1.2e+02 Score=18.79 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHH
Q 047113 32 EREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 71 (145)
.+.|..+|-+|.. .++.| |...||.-..-++....++-+
T Consensus 13 id~AYDiFLE~A~-dNL~paDi~lFnlqFeerGaaE~v~~~ 52 (107)
T PRK05094 13 LEQAYDIFLELAA-DNLDPADILLFNLQFEERGGAELVDPA 52 (107)
T ss_pred HHHHHHHHHHhhh-hcCCHHHHHHHHHHHHhcCCeeecCch
Confidence 4678899999998 88888 778888888776665555444
No 430
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=20.09 E-value=1.3e+02 Score=18.26 Aligned_cols=19 Identities=16% Similarity=-0.137 Sum_probs=15.5
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
.++.|++++|.+++++-.+
T Consensus 27 ~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 27 AAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4789999999999887654
Done!