Query 047113
Match_columns 145
No_of_seqs 108 out of 1266
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.1E-30 3.7E-35 200.2 8.3 136 1-138 42-210 (501)
2 4g26_A Pentatricopeptide repea 99.9 1E-27 3.4E-32 183.9 8.5 136 3-140 8-177 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.9E-22 6.5E-27 162.4 9.2 117 16-133 127-264 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 3.3E-21 1.1E-25 155.3 6.4 99 1-101 143-249 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 1.8E-14 6.1E-19 110.7 10.4 138 2-142 424-587 (597)
6 2xpi_A Anaphase-promoting comp 99.5 2.8E-14 9.5E-19 109.7 9.6 135 2-140 289-442 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.2 1.4E-10 4.8E-15 84.9 11.7 136 2-142 220-376 (388)
8 2y4t_A DNAJ homolog subfamily 99.1 4.1E-10 1.4E-14 83.5 9.6 135 2-142 194-366 (450)
9 3as5_A MAMA; tetratricopeptide 99.1 4.4E-09 1.5E-13 68.4 12.6 139 2-144 25-183 (186)
10 2ho1_A Type 4 fimbrial biogene 99.0 5.5E-09 1.9E-13 71.8 11.9 135 2-139 54-209 (252)
11 1w3b_A UDP-N-acetylglucosamine 99.0 3E-09 1E-13 77.8 11.1 117 19-141 206-341 (388)
12 1b89_A Protein (clathrin heavy 99.0 4.5E-11 1.5E-15 90.0 0.5 119 1-131 19-148 (449)
13 3mkr_A Coatomer subunit epsilo 99.0 1.6E-08 5.3E-13 72.2 12.9 129 3-138 119-268 (291)
14 2fo7_A Synthetic consensus TPR 99.0 2E-08 7E-13 61.7 12.0 116 18-137 3-135 (136)
15 2y4t_A DNAJ homolog subfamily 99.0 4.1E-09 1.4E-13 78.1 10.1 134 3-139 44-245 (450)
16 2ho1_A Type 4 fimbrial biogene 99.0 6.1E-09 2.1E-13 71.5 10.2 137 2-141 88-245 (252)
17 2vq2_A PILW, putative fimbrial 99.0 7.4E-09 2.5E-13 69.5 10.1 135 2-139 25-182 (225)
18 3vtx_A MAMA; tetratricopeptide 99.0 6.1E-09 2.1E-13 68.6 9.5 134 2-140 22-176 (184)
19 3mkr_A Coatomer subunit epsilo 98.9 5E-09 1.7E-13 74.8 9.3 131 2-142 82-237 (291)
20 4eqf_A PEX5-related protein; a 98.9 2.1E-09 7E-14 78.0 7.4 137 2-140 82-282 (365)
21 3vtx_A MAMA; tetratricopeptide 98.9 1E-08 3.5E-13 67.5 10.1 123 15-142 4-144 (184)
22 2q7f_A YRRB protein; TPR, prot 98.9 1E-08 3.5E-13 69.8 9.8 133 3-139 75-227 (243)
23 3hym_B Cell division cycle pro 98.9 3E-08 1E-12 70.2 12.0 138 2-141 142-306 (330)
24 2pl2_A Hypothetical conserved 98.9 1.7E-08 5.9E-13 68.7 10.2 135 2-142 22-188 (217)
25 2q7f_A YRRB protein; TPR, prot 98.9 1.5E-08 5E-13 69.0 9.1 135 2-140 40-194 (243)
26 4eqf_A PEX5-related protein; a 98.9 6.9E-09 2.3E-13 75.2 7.6 122 15-140 64-248 (365)
27 2vq2_A PILW, putative fimbrial 98.8 3.1E-08 1.1E-12 66.4 10.1 137 2-141 59-218 (225)
28 3hym_B Cell division cycle pro 98.8 6.5E-08 2.2E-12 68.4 11.1 136 2-141 108-272 (330)
29 1fch_A Peroxisomal targeting s 98.8 1.7E-08 5.9E-13 72.8 8.0 76 2-79 81-159 (368)
30 4gyw_A UDP-N-acetylglucosamine 98.8 2.2E-08 7.5E-13 79.9 8.7 120 16-141 9-147 (723)
31 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4.1E-13 65.8 5.6 120 2-143 14-138 (150)
32 3uq3_A Heat shock protein STI1 98.7 2.3E-08 8E-13 68.4 6.9 65 14-79 36-106 (258)
33 4gco_A Protein STI-1; structur 98.7 3.6E-08 1.2E-12 61.8 7.2 106 15-141 12-117 (126)
34 3cv0_A Peroxisome targeting si 98.7 1.9E-07 6.6E-12 65.9 11.8 130 2-135 155-316 (327)
35 3gyz_A Chaperone protein IPGC; 98.7 5.7E-08 2E-12 63.1 7.6 102 15-138 35-137 (151)
36 3ieg_A DNAJ homolog subfamily 98.7 1.9E-07 6.7E-12 66.5 11.1 133 2-140 20-189 (359)
37 4abn_A Tetratricopeptide repea 98.7 8.2E-08 2.8E-12 72.9 9.6 134 2-141 120-294 (474)
38 2pl2_A Hypothetical conserved 98.7 1.3E-07 4.5E-12 64.3 9.6 125 2-132 56-212 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 98.7 2.5E-07 8.4E-12 64.0 10.9 133 2-138 22-177 (275)
40 2kck_A TPR repeat; tetratricop 98.7 4.3E-07 1.5E-11 54.1 10.5 108 13-139 3-111 (112)
41 1na0_A Designed protein CTPR3; 98.7 1E-07 3.5E-12 57.9 7.6 104 16-140 9-112 (125)
42 3urz_A Uncharacterized protein 98.7 2E-07 6.8E-12 63.0 9.4 131 2-138 21-190 (208)
43 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.2E-07 2.8E-11 59.4 12.3 131 2-138 23-154 (213)
44 1fch_A Peroxisomal targeting s 98.7 4.5E-07 1.6E-11 65.3 11.7 127 2-132 198-357 (368)
45 1xnf_A Lipoprotein NLPI; TPR, 98.7 2.3E-07 7.9E-12 64.1 9.8 134 2-140 60-250 (275)
46 3fp2_A TPR repeat-containing p 98.7 9.4E-08 3.2E-12 72.2 8.3 134 2-140 219-379 (537)
47 1b89_A Protein (clathrin heavy 98.7 1.3E-08 4.6E-13 76.6 3.6 96 16-129 94-201 (449)
48 3cv0_A Peroxisome targeting si 98.6 9.8E-08 3.3E-12 67.4 7.6 76 2-79 38-116 (327)
49 2vsy_A XCC0866; transferase, g 98.6 5.1E-07 1.7E-11 69.6 11.9 137 1-143 5-166 (568)
50 4i17_A Hypothetical protein; T 98.6 5E-07 1.7E-11 61.3 10.6 119 15-137 6-149 (228)
51 2vgx_A Chaperone SYCD; alterna 98.6 1.9E-07 6.6E-12 60.0 8.0 106 15-141 20-125 (148)
52 2gw1_A Mitochondrial precursor 98.6 3E-07 1E-11 68.9 10.1 62 16-79 338-399 (514)
53 3ieg_A DNAJ homolog subfamily 98.6 8.4E-07 2.9E-11 63.2 12.0 123 15-140 187-341 (359)
54 3fp2_A TPR repeat-containing p 98.6 1.5E-07 5.2E-12 71.0 8.3 137 2-142 260-415 (537)
55 3uq3_A Heat shock protein STI1 98.6 6.9E-08 2.3E-12 66.0 5.7 131 2-135 55-237 (258)
56 3as5_A MAMA; tetratricopeptide 98.6 2.6E-07 9E-12 59.8 8.3 121 16-140 8-145 (186)
57 4gyw_A UDP-N-acetylglucosamine 98.6 4.5E-07 1.5E-11 72.4 11.1 126 2-133 26-173 (723)
58 2gw1_A Mitochondrial precursor 98.6 8.2E-08 2.8E-12 72.0 6.0 119 16-139 237-372 (514)
59 3u4t_A TPR repeat-containing p 98.6 3.9E-07 1.3E-11 63.0 9.0 133 2-138 20-175 (272)
60 3u4t_A TPR repeat-containing p 98.6 6.3E-07 2.1E-11 61.9 9.7 122 17-142 4-145 (272)
61 2xcb_A PCRH, regulatory protei 98.5 3.1E-07 1E-11 58.3 7.3 115 6-141 5-122 (142)
62 2ond_A Cleavage stimulation fa 98.5 3.5E-06 1.2E-10 60.0 13.4 128 2-134 81-232 (308)
63 3sz7_A HSC70 cochaperone (SGT) 98.5 5.1E-07 1.7E-11 58.5 8.1 106 15-141 10-115 (164)
64 2h6f_A Protein farnesyltransfe 98.5 2.4E-07 8.1E-12 68.8 7.2 134 2-141 114-276 (382)
65 1elw_A TPR1-domain of HOP; HOP 98.5 8.7E-07 3E-11 53.2 8.4 106 15-141 3-108 (118)
66 4i17_A Hypothetical protein; T 98.5 6.2E-07 2.1E-11 60.8 8.5 134 2-141 24-216 (228)
67 2h6f_A Protein farnesyltransfe 98.5 2.4E-07 8E-12 68.8 6.9 122 15-142 96-237 (382)
68 2lni_A Stress-induced-phosphop 98.5 6E-07 2.1E-11 55.2 7.7 104 15-140 15-119 (133)
69 2pzi_A Probable serine/threoni 98.5 7.3E-07 2.5E-11 70.6 9.7 135 2-142 408-571 (681)
70 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4E-11 57.2 9.1 118 2-140 27-150 (177)
71 2dba_A Smooth muscle cell asso 98.5 7.5E-07 2.6E-11 55.9 7.6 105 14-140 26-134 (148)
72 2ooe_A Cleavage stimulation fa 98.4 7.6E-06 2.6E-10 62.5 13.9 131 3-139 304-459 (530)
73 3edt_B KLC 2, kinesin light ch 98.4 2.5E-06 8.7E-11 58.7 10.4 132 2-133 25-197 (283)
74 3q49_B STIP1 homology and U bo 98.4 1.6E-06 5.6E-11 53.9 8.4 104 13-137 6-109 (137)
75 1hxi_A PEX5, peroxisome target 98.4 2E-06 6.8E-11 53.3 8.5 102 16-139 17-119 (121)
76 4abn_A Tetratricopeptide repea 98.4 5.1E-07 1.7E-11 68.5 6.8 134 3-142 86-261 (474)
77 2vyi_A SGTA protein; chaperone 98.4 1.4E-06 4.8E-11 53.1 7.6 105 15-140 11-115 (131)
78 3upv_A Heat shock protein STI1 98.4 5.5E-07 1.9E-11 55.6 5.6 99 16-135 4-102 (126)
79 4g1t_A Interferon-induced prot 98.4 2.6E-06 8.9E-11 63.5 9.6 136 3-142 318-467 (472)
80 1p5q_A FKBP52, FK506-binding p 98.3 2E-07 7E-12 67.7 3.1 111 15-131 146-291 (336)
81 2ond_A Cleavage stimulation fa 98.3 1.8E-05 6E-10 56.4 12.5 134 2-139 116-275 (308)
82 3urz_A Uncharacterized protein 98.3 1.1E-06 3.9E-11 59.2 6.0 99 19-139 7-122 (208)
83 3qou_A Protein YBBN; thioredox 98.3 7.5E-06 2.6E-10 58.0 9.9 125 8-138 109-252 (287)
84 1qqe_A Vesicular transport pro 98.3 7.5E-06 2.6E-10 58.0 9.7 125 16-140 77-234 (292)
85 3nf1_A KLC 1, kinesin light ch 98.3 1.2E-06 4.2E-11 61.3 5.3 121 15-136 152-309 (311)
86 3mv2_B Coatomer subunit epsilo 98.3 7E-06 2.4E-10 59.2 9.3 127 4-134 85-240 (310)
87 4gcn_A Protein STI-1; structur 98.3 4.1E-06 1.4E-10 52.2 7.2 105 16-136 8-114 (127)
88 2fbn_A 70 kDa peptidylprolyl i 98.2 1.5E-06 5.2E-11 57.9 5.1 106 15-139 37-156 (198)
89 1a17_A Serine/threonine protei 98.2 1.3E-05 4.6E-10 50.9 8.9 114 16-133 13-145 (166)
90 2fo7_A Synthetic consensus TPR 98.2 4.3E-05 1.5E-09 46.3 10.8 96 2-101 18-116 (136)
91 1ouv_A Conserved hypothetical 98.2 7.4E-05 2.5E-09 51.8 13.0 60 16-79 38-105 (273)
92 2c2l_A CHIP, carboxy terminus 98.2 1.3E-05 4.4E-10 56.6 9.2 103 15-139 3-106 (281)
93 3edt_B KLC 2, kinesin light ch 98.2 8.6E-06 2.9E-10 56.0 8.1 28 106-133 253-280 (283)
94 1elr_A TPR2A-domain of HOP; HO 98.2 1.6E-05 5.3E-10 48.4 8.5 103 16-136 4-110 (131)
95 1hh8_A P67PHOX, NCF-2, neutrop 98.2 1.1E-05 3.7E-10 53.8 8.2 100 16-139 6-105 (213)
96 2r5s_A Uncharacterized protein 98.2 1.7E-05 5.8E-10 51.8 9.0 113 19-137 9-140 (176)
97 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.4E-06 8.3E-11 64.5 5.3 102 15-139 267-385 (457)
98 1ouv_A Conserved hypothetical 98.1 6.8E-05 2.3E-09 52.0 12.4 126 2-135 59-216 (273)
99 3qky_A Outer membrane assembly 98.1 7.4E-05 2.5E-09 51.6 11.7 135 2-139 32-229 (261)
100 2xev_A YBGF; tetratricopeptide 98.1 1.7E-05 5.9E-10 48.5 7.6 102 19-139 5-110 (129)
101 3rkv_A Putative peptidylprolyl 98.1 8.3E-06 2.8E-10 52.5 6.3 104 16-139 11-131 (162)
102 3nf1_A KLC 1, kinesin light ch 98.1 2.8E-05 9.5E-10 54.3 9.4 118 15-133 26-181 (311)
103 1wao_1 Serine/threonine protei 98.1 2.5E-05 8.4E-10 59.4 9.6 106 2-129 23-134 (477)
104 2hr2_A Hypothetical protein; a 98.1 8.7E-06 3E-10 53.2 6.1 109 17-141 12-138 (159)
105 3qky_A Outer membrane assembly 98.1 0.00021 7.3E-09 49.2 13.3 124 13-139 12-182 (261)
106 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.9E-10 57.5 7.9 105 16-142 179-301 (338)
107 4ga2_A E3 SUMO-protein ligase 98.0 6.8E-07 2.3E-11 57.4 0.2 97 24-142 5-102 (150)
108 1na0_A Designed protein CTPR3; 98.0 0.00013 4.6E-09 43.6 10.6 92 2-97 26-120 (125)
109 3k9i_A BH0479 protein; putativ 98.0 1.9E-06 6.4E-11 52.7 2.0 75 2-79 7-88 (117)
110 3gw4_A Uncharacterized protein 98.0 3.6E-05 1.2E-09 50.6 8.3 132 2-133 9-175 (203)
111 4gco_A Protein STI-1; structur 98.0 9.4E-05 3.2E-09 45.9 9.6 90 2-96 30-123 (126)
112 1a17_A Serine/threonine protei 98.0 0.00016 5.3E-09 45.8 10.9 76 2-79 30-108 (166)
113 3k9i_A BH0479 protein; putativ 98.0 4.6E-05 1.6E-09 46.4 7.9 70 28-101 2-74 (117)
114 1qqe_A Vesicular transport pro 98.0 0.0001 3.5E-09 52.0 10.7 121 16-137 117-272 (292)
115 2ooe_A Cleavage stimulation fa 97.9 0.00027 9.3E-09 53.8 13.0 117 14-137 11-161 (530)
116 2l6j_A TPR repeat-containing p 97.9 9.8E-05 3.3E-09 43.8 8.1 103 15-132 3-105 (111)
117 3gyz_A Chaperone protein IPGC; 97.9 0.00014 4.9E-09 46.8 9.1 75 2-79 53-131 (151)
118 2vyi_A SGTA protein; chaperone 97.9 0.00039 1.3E-08 41.8 10.5 76 2-79 29-107 (131)
119 2kat_A Uncharacterized protein 97.9 0.00034 1.2E-08 42.1 10.1 77 1-79 1-80 (115)
120 2lni_A Stress-induced-phosphop 97.8 0.00039 1.3E-08 42.2 10.3 92 2-98 33-128 (133)
121 2r5s_A Uncharacterized protein 97.8 0.00036 1.2E-08 45.4 10.6 124 2-131 23-170 (176)
122 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00068 2.3E-08 45.8 12.0 136 2-140 21-219 (225)
123 3qou_A Protein YBBN; thioredox 97.8 0.00029 9.9E-09 49.7 10.3 123 2-130 134-280 (287)
124 2c2l_A CHIP, carboxy terminus 97.8 0.00045 1.5E-08 48.6 11.2 75 2-79 21-99 (281)
125 1ihg_A Cyclophilin 40; ppiase 97.8 4.2E-05 1.4E-09 56.3 5.7 105 17-140 224-342 (370)
126 1p5q_A FKBP52, FK506-binding p 97.8 0.00027 9.3E-09 51.1 9.9 97 16-117 196-297 (336)
127 3ulq_A Response regulator aspa 97.8 0.00019 6.6E-09 52.2 9.2 118 16-133 143-292 (383)
128 3sf4_A G-protein-signaling mod 97.7 0.00033 1.1E-08 50.5 10.3 118 16-133 187-335 (406)
129 2vgx_A Chaperone SYCD; alterna 97.7 0.00062 2.1E-08 43.3 10.4 76 2-80 38-117 (148)
130 2vsy_A XCC0866; transferase, g 97.7 4.8E-05 1.6E-09 58.5 5.9 107 29-141 2-127 (568)
131 3ro2_A PINS homolog, G-protein 97.7 8.3E-05 2.8E-09 52.0 6.7 121 16-136 183-334 (338)
132 3ulq_A Response regulator aspa 97.7 0.0004 1.4E-08 50.5 10.0 117 17-133 225-367 (383)
133 2yhc_A BAMD, UPF0169 lipoprote 97.7 0.00074 2.5E-08 45.7 10.7 125 16-140 4-131 (225)
134 3sz7_A HSC70 cochaperone (SGT) 97.7 0.001 3.4E-08 42.6 10.9 76 2-79 28-106 (164)
135 1elw_A TPR1-domain of HOP; HOP 97.7 0.0013 4.6E-08 38.6 10.8 89 2-95 21-113 (118)
136 4f3v_A ESX-1 secretion system 97.7 0.00056 1.9E-08 48.7 10.3 118 2-137 119-240 (282)
137 1wao_1 Serine/threonine protei 97.7 6.8E-05 2.3E-09 57.0 5.9 102 19-142 9-111 (477)
138 2kck_A TPR repeat; tetratricop 97.7 0.00071 2.4E-08 39.6 9.4 76 2-79 23-104 (112)
139 3u3w_A Transcriptional activat 97.7 0.00081 2.8E-08 47.3 11.0 114 19-133 118-265 (293)
140 4gcn_A Protein STI-1; structur 97.7 0.0002 6.8E-09 44.4 7.0 89 2-94 25-122 (127)
141 4g1t_A Interferon-induced prot 97.6 0.00072 2.5E-08 50.2 11.1 119 14-137 207-366 (472)
142 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00014 4.7E-09 52.8 6.9 102 18-140 232-334 (338)
143 2xcb_A PCRH, regulatory protei 97.6 0.00089 3E-08 41.9 9.9 76 2-79 35-113 (142)
144 4a1s_A PINS, partner of inscut 97.6 0.00028 9.5E-09 51.4 8.4 118 16-133 223-371 (411)
145 2ifu_A Gamma-SNAP; membrane fu 97.6 0.00044 1.5E-08 49.1 9.3 122 16-139 76-228 (307)
146 1elr_A TPR2A-domain of HOP; HO 97.6 0.00038 1.3E-08 41.9 7.8 91 2-96 21-120 (131)
147 3q15_A PSP28, response regulat 97.6 0.00045 1.5E-08 50.3 9.3 119 16-134 141-290 (378)
148 1hxi_A PEX5, peroxisome target 97.6 0.00041 1.4E-08 42.6 7.8 75 2-79 34-112 (121)
149 3ma5_A Tetratricopeptide repea 97.6 0.00078 2.7E-08 39.7 8.8 83 14-98 5-87 (100)
150 1xi4_A Clathrin heavy chain; a 97.6 0.0012 4E-08 56.4 12.5 117 2-130 1093-1220(1630)
151 3u3w_A Transcriptional activat 97.6 0.0019 6.6E-08 45.3 12.3 116 19-134 78-225 (293)
152 3upv_A Heat shock protein STI1 97.6 0.0011 3.7E-08 40.4 9.5 75 2-79 21-99 (126)
153 3ro3_A PINS homolog, G-protein 97.6 0.00053 1.8E-08 42.7 8.1 116 18-133 11-157 (164)
154 3rjv_A Putative SEL1 repeat pr 97.6 0.0011 3.9E-08 44.5 10.1 123 3-134 4-158 (212)
155 3q15_A PSP28, response regulat 97.5 0.0014 4.7E-08 47.6 10.5 118 16-133 222-364 (378)
156 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0012 4.3E-08 43.5 9.1 95 17-132 89-184 (198)
157 3mv2_B Coatomer subunit epsilo 97.4 0.00017 5.9E-09 52.0 5.1 117 2-139 153-287 (310)
158 3qww_A SET and MYND domain-con 97.4 0.00068 2.3E-08 51.1 8.4 94 28-133 310-410 (433)
159 3q49_B STIP1 homology and U bo 97.4 0.0018 6.1E-08 39.7 8.6 76 2-79 26-104 (137)
160 1na3_A Designed protein CTPR2; 97.4 0.0045 1.5E-07 34.9 9.8 79 15-98 8-87 (91)
161 3n71_A Histone lysine methyltr 97.3 0.00072 2.5E-08 51.7 7.7 97 25-133 318-421 (490)
162 2dba_A Smooth muscle cell asso 97.3 0.0038 1.3E-07 38.4 9.9 75 2-79 45-126 (148)
163 3qwp_A SET and MYND domain-con 97.3 0.0016 5.3E-08 49.0 9.3 100 22-133 293-399 (429)
164 2pzi_A Probable serine/threoni 97.3 0.0011 3.6E-08 52.5 8.7 124 2-132 450-603 (681)
165 3dra_A Protein farnesyltransfe 97.3 0.0034 1.2E-07 45.1 10.4 134 2-139 127-293 (306)
166 2xev_A YBGF; tetratricopeptide 97.3 0.0029 1E-07 38.2 8.8 76 2-80 19-104 (129)
167 3sf4_A G-protein-signaling mod 97.3 0.0012 4E-08 47.6 7.7 118 16-133 87-255 (406)
168 4a1s_A PINS, partner of inscut 97.2 0.00094 3.2E-08 48.6 7.0 118 16-133 126-291 (411)
169 2kc7_A BFR218_protein; tetratr 97.2 0.0019 6.5E-08 37.4 7.1 88 22-139 6-95 (99)
170 1zu2_A Mitochondrial import re 97.2 0.00025 8.5E-09 46.2 3.4 100 26-140 12-126 (158)
171 3ro2_A PINS homolog, G-protein 97.2 0.0013 4.5E-08 45.8 7.4 118 16-133 83-251 (338)
172 2qfc_A PLCR protein; TPR, HTH, 97.2 0.016 5.4E-07 40.6 13.0 112 19-131 118-263 (293)
173 3n71_A Histone lysine methyltr 97.2 0.0038 1.3E-07 47.7 10.3 105 17-133 352-463 (490)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.004 1.4E-07 46.9 10.2 89 16-125 317-405 (457)
175 2qfc_A PLCR protein; TPR, HTH, 97.1 0.02 6.9E-07 40.0 12.9 118 17-134 76-225 (293)
176 1ihg_A Cyclophilin 40; ppiase 97.1 0.0025 8.5E-08 46.8 8.1 90 15-126 272-362 (370)
177 1zu2_A Mitochondrial import re 97.1 0.0016 5.6E-08 42.3 6.1 92 2-99 19-135 (158)
178 4e6h_A MRNA 3'-END-processing 97.1 0.016 5.5E-07 46.1 12.8 134 2-136 360-535 (679)
179 2l6j_A TPR repeat-containing p 97.0 0.0024 8.1E-08 37.5 6.2 70 50-138 2-71 (111)
180 3rkv_A Putative peptidylprolyl 97.0 0.0046 1.6E-07 39.3 7.7 63 15-79 62-124 (162)
181 2kat_A Uncharacterized protein 97.0 0.0011 3.7E-08 39.8 4.3 82 33-136 2-84 (115)
182 3gw4_A Uncharacterized protein 96.9 0.0048 1.6E-07 40.1 7.8 133 3-135 51-197 (203)
183 2xm6_A Protein corresponding t 96.9 0.045 1.5E-06 41.1 13.6 60 16-79 75-142 (490)
184 2xm6_A Protein corresponding t 96.9 0.037 1.3E-06 41.6 13.0 90 3-100 97-195 (490)
185 2e2e_A Formate-dependent nitri 96.8 0.023 7.9E-07 36.3 10.1 76 2-79 61-142 (177)
186 1na3_A Designed protein CTPR2; 96.8 0.001 3.6E-08 37.7 3.2 72 51-141 8-79 (91)
187 1xi4_A Clathrin heavy chain; a 96.8 0.0085 2.9E-07 51.4 9.6 108 14-138 1193-1313(1630)
188 3rjv_A Putative SEL1 repeat pr 96.8 0.034 1.2E-06 37.1 11.2 126 2-133 35-196 (212)
189 1hz4_A MALT regulatory protein 96.7 0.067 2.3E-06 38.3 12.9 116 17-133 136-281 (373)
190 4b4t_Q 26S proteasome regulato 96.5 0.025 8.6E-07 41.3 9.8 116 18-133 57-203 (434)
191 4e6h_A MRNA 3'-END-processing 96.5 0.01 3.5E-07 47.2 8.1 119 17-139 435-575 (679)
192 2ifu_A Gamma-SNAP; membrane fu 96.5 0.019 6.4E-07 40.6 8.7 120 17-136 37-186 (307)
193 2hr2_A Hypothetical protein; a 96.5 0.0048 1.6E-07 40.2 5.1 72 18-90 59-144 (159)
194 3e4b_A ALGK; tetratricopeptide 96.5 0.053 1.8E-06 40.6 11.5 121 4-132 164-314 (452)
195 1hz4_A MALT regulatory protein 96.5 0.062 2.1E-06 38.5 11.4 116 18-133 55-202 (373)
196 4f3v_A ESX-1 secretion system 96.4 0.038 1.3E-06 39.3 9.4 90 2-95 152-248 (282)
197 3ma5_A Tetratricopeptide repea 96.3 0.015 5.1E-07 34.0 6.3 65 51-134 6-70 (100)
198 4b4t_Q 26S proteasome regulato 96.2 0.032 1.1E-06 40.7 8.9 109 24-133 12-163 (434)
199 3qww_A SET and MYND domain-con 96.2 0.027 9.1E-07 42.4 8.3 63 17-79 341-409 (433)
200 1dce_A Protein (RAB geranylger 96.2 0.021 7.3E-07 44.3 7.9 132 2-143 90-230 (567)
201 1dce_A Protein (RAB geranylger 96.1 0.059 2E-06 41.8 10.2 119 3-142 47-181 (567)
202 2kc7_A BFR218_protein; tetratr 96.0 0.0055 1.9E-07 35.4 3.1 65 59-142 7-72 (99)
203 1v54_E Cytochrome C oxidase po 95.8 0.043 1.5E-06 32.9 6.1 64 31-97 25-88 (109)
204 1klx_A Cysteine rich protein B 95.6 0.19 6.6E-06 31.1 9.5 105 2-133 12-125 (138)
205 3ly7_A Transcriptional activat 95.5 0.084 2.9E-06 39.0 8.4 73 14-92 275-347 (372)
206 3ro3_A PINS homolog, G-protein 95.4 0.084 2.9E-06 32.2 7.1 85 17-101 50-142 (164)
207 3bee_A Putative YFRE protein; 95.3 0.087 3E-06 30.7 6.6 63 14-79 4-70 (93)
208 3qwp_A SET and MYND domain-con 95.3 0.054 1.8E-06 40.6 6.7 63 17-79 330-398 (429)
209 3dss_A Geranylgeranyl transfer 95.2 0.1 3.5E-06 37.9 7.9 133 3-142 92-230 (331)
210 3q7a_A Farnesyltransferase alp 95.1 0.48 1.6E-05 34.6 11.2 129 3-136 143-334 (349)
211 3mkq_A Coatomer beta'-subunit; 95.1 0.19 6.4E-06 39.8 9.8 47 26-79 662-708 (814)
212 3dss_A Geranylgeranyl transfer 95.1 0.2 6.7E-06 36.4 9.0 126 2-139 127-272 (331)
213 3dra_A Protein farnesyltransfe 95.0 0.35 1.2E-05 34.6 10.2 62 16-79 67-137 (306)
214 2v5f_A Prolyl 4-hydroxylase su 94.8 0.22 7.7E-06 29.2 7.5 68 17-87 6-78 (104)
215 2y69_E Cytochrome C oxidase su 94.6 0.14 4.7E-06 32.4 6.1 62 33-97 70-131 (152)
216 3mkq_B Coatomer subunit alpha; 94.3 0.51 1.7E-05 31.1 8.7 29 15-43 33-61 (177)
217 3e4b_A ALGK; tetratricopeptide 94.0 0.076 2.6E-06 39.8 4.9 34 105-138 176-212 (452)
218 1pc2_A Mitochondria fission pr 93.9 0.35 1.2E-05 31.0 7.3 88 33-139 15-105 (152)
219 3q7a_A Farnesyltransferase alp 93.9 0.34 1.2E-05 35.4 8.0 105 16-141 88-203 (349)
220 1klx_A Cysteine rich protein B 93.7 0.54 1.8E-05 29.0 7.9 77 3-84 43-128 (138)
221 2ff4_A Probable regulatory pro 93.3 0.73 2.5E-05 33.9 9.1 81 19-101 174-258 (388)
222 3u64_A Protein TP_0956; tetrat 93.2 0.41 1.4E-05 34.2 7.3 88 3-94 181-283 (301)
223 2v5f_A Prolyl 4-hydroxylase su 93.1 0.3 1E-05 28.6 5.7 78 51-140 4-81 (104)
224 3ly7_A Transcriptional activat 92.5 0.73 2.5E-05 34.0 7.9 124 14-140 192-345 (372)
225 3bee_A Putative YFRE protein; 92.5 0.89 3E-05 26.2 10.2 43 2-44 26-71 (93)
226 1pc2_A Mitochondria fission pr 87.3 4.1 0.00014 26.0 7.5 80 3-88 16-104 (152)
227 2uy1_A Cleavage stimulation fa 87.2 8.1 0.00028 29.2 12.5 30 15-44 212-241 (493)
228 3mkq_A Coatomer beta'-subunit; 86.0 9.2 0.00032 30.1 10.3 55 15-79 680-734 (814)
229 1v54_E Cytochrome C oxidase po 84.8 4 0.00014 24.4 5.8 44 14-59 43-86 (109)
230 1nzn_A CGI-135 protein, fissio 83.9 5.7 0.00019 24.5 7.9 91 31-141 16-110 (126)
231 2uy1_A Cleavage stimulation fa 82.9 13 0.00046 28.0 10.1 111 17-133 287-412 (493)
232 3ygs_P Procaspase 9; apoptosis 82.1 1.7 6E-05 25.4 3.6 40 30-74 51-90 (97)
233 1y8m_A FIS1; mitochondria, unk 82.0 3.7 0.00013 26.0 5.2 58 64-140 54-112 (144)
234 1zbp_A Hypothetical protein VP 81.5 12 0.0004 26.4 8.7 111 24-137 5-132 (273)
235 2ff4_A Probable regulatory pro 81.1 2.6 8.8E-05 31.0 5.0 41 15-55 204-248 (388)
236 3o48_A Mitochondria fission 1 80.2 4.8 0.00016 25.2 5.2 59 64-140 55-113 (134)
237 2nsz_A Programmed cell death p 80.1 8.1 0.00028 23.7 8.9 101 18-121 9-118 (129)
238 1wy6_A Hypothetical protein ST 79.8 9.5 0.00033 24.4 8.2 68 15-85 90-157 (172)
239 2ion_A PDCD4, programmed cell 77.4 11 0.00039 23.9 8.9 102 18-122 11-121 (152)
240 3ffl_A Anaphase-promoting comp 77.1 12 0.00043 24.2 8.6 116 18-133 22-150 (167)
241 3mv2_A Coatomer subunit alpha; 76.6 11 0.00036 27.3 6.8 105 26-137 124-239 (325)
242 3u64_A Protein TP_0956; tetrat 76.4 6.9 0.00024 28.0 5.7 109 8-137 144-272 (301)
243 2p1h_A APAF-1, apoptotic prote 75.4 4.4 0.00015 23.3 3.9 38 29-71 49-86 (94)
244 4gns_B Protein CSD3, chitin bi 74.9 32 0.0011 27.9 10.9 31 102-132 368-398 (754)
245 3lvg_A Clathrin heavy chain 1; 74.6 0.32 1.1E-05 37.6 -1.5 109 15-133 53-172 (624)
246 2y69_E Cytochrome C oxidase su 74.6 12 0.0004 23.7 5.8 44 14-59 86-129 (152)
247 2p58_C Putative type III secre 71.7 14 0.00046 22.2 5.4 59 24-91 48-106 (116)
248 3l6a_A Eukaryotic translation 71.6 27 0.00092 25.5 8.4 64 18-87 14-82 (364)
249 2rg8_A Programmed cell death p 70.6 18 0.00063 23.2 8.6 68 18-90 12-81 (165)
250 2yru_A Steroid receptor RNA ac 69.9 16 0.00054 22.2 6.9 61 18-79 21-88 (118)
251 4b4t_R RPN7, 26S proteasome re 69.8 12 0.00042 27.7 6.1 61 18-79 133-195 (429)
252 1ug3_A EIF4GI, eukaryotic prot 69.6 19 0.00066 25.9 6.9 64 19-85 14-78 (339)
253 2uwj_G Type III export protein 67.4 13 0.00043 22.2 4.5 59 24-91 47-105 (115)
254 4h7y_A Dual specificity protei 62.3 28 0.00097 22.4 6.1 64 29-96 73-136 (161)
255 2zu6_B Programmed cell death p 62.2 40 0.0014 24.0 8.0 103 18-123 168-279 (307)
256 3eiq_C Programmed cell death p 58.7 50 0.0017 24.1 9.0 103 18-123 219-330 (358)
257 4gns_B Protein CSD3, chitin bi 58.0 18 0.00061 29.3 5.3 51 26-79 347-398 (754)
258 3bqo_A Telomeric repeat-bindin 57.3 7 0.00024 26.2 2.4 28 109-136 121-148 (211)
259 3eiq_C Programmed cell death p 55.7 57 0.002 23.8 8.4 78 18-100 56-135 (358)
260 3bu8_A Telomeric repeat-bindin 54.6 34 0.0012 23.3 5.4 49 32-80 88-142 (235)
261 1wgl_A TOLL-interacting protei 54.0 15 0.00051 19.3 3.0 23 63-86 34-56 (59)
262 4a1g_A Mitotic checkpoint seri 53.1 24 0.00081 22.5 4.3 78 2-87 52-135 (152)
263 1oai_A Nuclear RNA export fact 52.3 13 0.00046 19.5 2.6 24 29-52 33-56 (59)
264 2wpv_A GET4, UPF0363 protein Y 50.4 66 0.0023 23.0 11.8 24 18-41 35-58 (312)
265 2keb_A DNA polymerase subunit 49.5 38 0.0013 19.9 6.9 60 34-94 27-88 (101)
266 3f3f_C Nucleoporin NUP85; stru 49.0 29 0.00099 27.1 5.0 26 54-79 518-543 (570)
267 3lpz_A GET4 (YOR164C homolog); 48.4 75 0.0026 23.0 11.6 24 18-41 37-60 (336)
268 3lvg_A Clathrin heavy chain 1; 48.1 6.8 0.00023 30.5 1.3 109 13-125 80-219 (624)
269 2zu6_B Programmed cell death p 47.3 74 0.0025 22.6 8.5 58 19-79 6-65 (307)
270 3bu8_A Telomeric repeat-bindin 46.4 67 0.0023 21.9 8.9 56 68-135 88-144 (235)
271 2ko4_A Mediator of RNA polymer 45.3 39 0.0013 19.0 3.8 37 6-42 24-62 (81)
272 2dod_A Transcription elongatio 42.3 23 0.00079 20.0 2.7 37 31-68 15-51 (82)
273 2p58_C Putative type III secre 41.8 55 0.0019 19.6 5.9 59 29-95 20-78 (116)
274 3crd_A Raidd; caspase recruitm 40.1 29 0.001 20.0 3.1 31 29-64 48-78 (100)
275 1uzc_A Hypothetical protein FL 37.9 28 0.00097 19.0 2.6 37 31-68 13-49 (71)
276 2crb_A Nuclear receptor bindin 36.2 34 0.0012 19.9 2.8 26 17-42 16-41 (97)
277 4h7y_A Dual specificity protei 35.9 86 0.003 20.1 9.3 104 12-136 9-125 (161)
278 3qil_A Clathrin heavy chain 1; 35.4 77 0.0026 19.4 4.5 45 57-105 37-82 (125)
279 3txn_A 26S proteasome regulato 34.6 1.4E+02 0.0047 22.1 9.3 58 21-79 104-166 (394)
280 2qx5_A Nucleoporin NIC96; mRNA 34.2 1.8E+02 0.0061 23.2 8.8 90 25-132 452-565 (661)
281 2etb_A Transient receptor pote 34.1 41 0.0014 22.2 3.5 57 22-79 5-70 (256)
282 2b7e_A PRE-mRNA processing pro 33.7 37 0.0013 17.9 2.5 35 32-67 2-37 (59)
283 2vgq_A Maltose-binding peripla 33.6 1.4E+02 0.005 22.0 6.8 66 4-75 408-473 (477)
284 2o03_A Probable zinc uptake re 30.9 89 0.003 18.7 4.6 47 21-68 15-61 (131)
285 3cqc_A Nuclear pore complex pr 30.7 37 0.0013 23.7 2.8 27 107-133 36-62 (270)
286 4a1g_A Mitotic checkpoint seri 28.6 1.1E+02 0.0039 19.3 5.2 50 48-101 64-114 (152)
287 3esl_A Checkpoint serine/threo 28.1 1.4E+02 0.0046 20.0 8.6 83 2-87 61-149 (202)
288 2bn5_A PSI; nuclear protein, s 27.9 38 0.0013 15.5 1.6 21 112-132 9-29 (33)
289 1xqo_A 8-oxoguanine DNA glycos 27.2 61 0.0021 22.5 3.3 34 31-66 195-231 (256)
290 3aji_A 26S proteasome non-ATPa 27.2 1.2E+02 0.0042 19.2 5.4 54 21-76 8-61 (231)
291 1jog_A Hypothetical protein HI 26.7 60 0.0021 20.2 3.1 47 32-79 54-103 (146)
292 4ady_A RPN2, 26S proteasome re 26.7 2.9E+02 0.0098 23.3 10.9 104 18-132 147-257 (963)
293 3jxi_A Vanilloid receptor-rela 26.7 53 0.0018 21.6 3.0 57 22-79 8-73 (260)
294 1ug3_A EIF4GI, eukaryotic prot 26.7 1.7E+02 0.006 20.8 7.2 128 2-130 28-166 (339)
295 1q2z_A ATP-dependent DNA helic 26.1 38 0.0013 20.4 2.0 34 66-99 41-74 (120)
296 4ets_A Ferric uptake regulatio 25.9 1.3E+02 0.0044 18.9 6.6 68 32-101 13-82 (162)
297 3ltj_A Alpharep-4; protein eng 25.8 1.3E+02 0.0043 18.9 11.3 20 12-31 24-43 (201)
298 2wvi_A Mitotic checkpoint seri 25.7 1.4E+02 0.0046 19.2 7.3 79 2-88 47-131 (164)
299 3mwm_A ZUR, putative metal upt 25.6 86 0.0029 19.1 3.6 45 22-67 19-63 (139)
300 3kat_A Nacht, LRR and PYD doma 25.0 61 0.0021 19.2 2.7 37 2-39 64-100 (107)
301 3mkr_B Coatomer subunit alpha; 24.9 1.9E+02 0.0067 20.7 9.4 104 26-136 112-229 (320)
302 1mzb_A Ferric uptake regulatio 24.4 1.1E+02 0.0037 18.5 3.9 57 42-101 9-66 (136)
303 2e2a_A Protein (enzyme IIA); h 24.0 68 0.0023 19.0 2.7 19 26-44 30-48 (105)
304 1wcr_A PTS system, N, N'-diace 23.7 70 0.0024 18.8 2.7 19 26-44 28-46 (103)
305 3ltm_A Alpha-REP4; protein eng 23.2 1.5E+02 0.0051 18.7 11.5 23 10-32 27-49 (211)
306 3kae_A CDC27, possible protein 23.0 1.7E+02 0.0059 19.4 10.1 111 25-136 71-239 (242)
307 2fe3_A Peroxide operon regulat 22.1 1.4E+02 0.0049 18.2 5.2 58 41-101 12-69 (145)
308 2jp7_A MRNA export factor MEX6 21.6 46 0.0016 17.3 1.5 20 31-52 34-53 (57)
309 2xig_A Ferric uptake regulatio 20.7 1.6E+02 0.0054 18.1 5.0 58 41-101 17-74 (150)
310 4f52_E Glomulin; cullin-ring E 20.7 2.5E+02 0.0085 22.0 6.0 87 42-130 18-110 (596)
311 3ffl_A Anaphase-promoting comp 20.6 1.8E+02 0.0061 18.7 7.4 61 18-79 65-149 (167)
312 3k1s_A PTS system, cellobiose- 20.5 87 0.003 18.6 2.7 19 26-44 32-50 (109)
313 1ixm_A SPO0B, protein (sporula 20.0 1.1E+02 0.0037 20.0 3.4 24 21-44 37-60 (192)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-30 Score=200.25 Aligned_cols=136 Identities=14% Similarity=0.066 Sum_probs=127.2
Q ss_pred CchHHHHhccCCC----CchhhHHHHHHHHHHcCC---------hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 1 MDDAERIFGGIID----KNVVIWSGMIASHAIHGQ---------EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 1 ~~~A~~~f~~m~~----~~~~~~~~li~a~~~~g~---------~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
+++|.++|++|+. ||.+|||+||.+|++.+. .++|.++|++|.. .|+.||..|||++|++|++.|+
T Consensus 42 ~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~ 120 (501)
T 4g26_A 42 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDD 120 (501)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCC
Confidence 3689999999974 899999999999998765 6889999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC------------------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG------------------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 68 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
++.|.++|++|. +.|+.||..||++||.+|++. .||..+|++||++|++.|++++|.++++
T Consensus 121 ~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 121 PEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 999999999999 899999999999999999998 9999999999999999999999999999
Q ss_pred cCCC--CCCCC
Q 047113 130 DPFH--LDPKN 138 (145)
Q Consensus 130 ~~~~--~~~~~ 138 (145)
+|.+ ..|+.
T Consensus 200 ~Mr~~g~~ps~ 210 (501)
T 4g26_A 200 RLRDLVRQVSK 210 (501)
T ss_dssp HHHHHTSSBCH
T ss_pred HHHHhCCCcCH
Confidence 9988 55643
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1e-27 Score=183.85 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=114.5
Q ss_pred hHHHHhccCCCC-----chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc---------hH
Q 047113 3 DAERIFGGIIDK-----NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG---------LI 68 (145)
Q Consensus 3 ~A~~~f~~m~~~-----~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---------~~ 68 (145)
.++.++..++++ +...++.+|++|++.|++++|.++|++|.+ .|++||..|||++|++|++.+ .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 456666777542 345799999999999999999999999999 999999999999999998755 47
Q ss_pred HHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC------------------CCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 69 EEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG------------------ETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 69 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
+.|.++|++|. ..|+.||..||++||++|++. .||..+||++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999 899999999999999999998 89999999999999999999999999999
Q ss_pred CCC--CCCCCCC
Q 047113 131 PFH--LDPKNDA 140 (145)
Q Consensus 131 ~~~--~~~~~~~ 140 (145)
|.+ +.|+..+
T Consensus 166 M~~~G~~Pd~~t 177 (501)
T 4g26_A 166 MVESEVVPEEPE 177 (501)
T ss_dssp HHHTTCCCCHHH
T ss_pred HHhcCCCCCHHH
Confidence 987 5675433
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=162.42 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHh--hcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIH--CSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
..|||+||++||+.|++++|.++|++|.+ +.|+.||..|||+||+++|+.|.+++|.++|++|. ..|+.||+.|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHH
Confidence 35899999999999999999999988753 16899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcC-------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 94 TVDLLATG-------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 94 li~~~~~~-------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
||+++|+. .||..+|++++.++.+.+-++...++...+.-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCC
Confidence 99999985 89999999999999998887777777655544
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.3e-21 Score=155.29 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=91.4
Q ss_pred CchHHHHhccCC-------CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchH-HHHH
Q 047113 1 MDDAERIFGGII-------DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLI-EEGI 72 (145)
Q Consensus 1 ~~~A~~~f~~m~-------~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~ 72 (145)
+++|.++|++|+ .||++|||+||++||+.|++++|.++|++|.+ .|++||.+|||++|+++|+.|.. +.|.
T Consensus 143 leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntLI~glcK~G~~~e~A~ 221 (1134)
T 3spa_A 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQCMGRQDQDAGTIE 221 (1134)
T ss_dssp HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 478999998764 48999999999999999999999999999999 99999999999999999999985 7899
Q ss_pred HHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 73 KVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
++|++|. ..|+.||..+|+++++.+.+.
T Consensus 222 ~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 222 RCLEQMS-QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHH-HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHH-HcCCCCChhhcccccChhhHH
Confidence 9999999 899999999999777766666
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.8e-14 Score=110.71 Aligned_cols=138 Identities=9% Similarity=-0.044 Sum_probs=90.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.++|+++. +++..+|+.++.+|.+.|++++|.++|++|.+ .. +.+..+|+.+...+.+.|++++|..+|+++
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA-LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666666542 23556666677777777777777777766654 32 235666777777777777777777777776
Q ss_pred hhhc----CcCcc--HHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 79 VHDF----QLDLN--LEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 79 ~~~~----~~~~~--~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
. .. +..|+ ..+|..++.+|.+. +.+..+|..+..+|.+.|++++|...++++.+..
T Consensus 502 ~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 502 L-LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp H-HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H-HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 6 32 55665 56777777777666 3356677777777777777777777777777777
Q ss_pred CCCCCCc
Q 047113 136 PKNDAYY 142 (145)
Q Consensus 136 ~~~~~~~ 142 (145)
|+++..+
T Consensus 581 p~~~~~~ 587 (597)
T 2xpi_A 581 PNEIMAS 587 (597)
T ss_dssp TTCHHHH
T ss_pred CCChHHH
Confidence 7665444
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.54 E-value=2.8e-14 Score=109.65 Aligned_cols=135 Identities=11% Similarity=-0.057 Sum_probs=93.5
Q ss_pred chHHHHhccCCC--CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 2 DDAERIFGGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++|.++|+++.. ++..+|+.++.+|.+.|++++|..+|++|.. .+ +.+..+++.++.++.+.|++++|..+++.+.
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 578889998876 6888999999999999999999999999876 44 2255666777777777777777777777666
Q ss_pred hhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 80 HDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.. ...+..+|+.++.+|.+. +.+..+|+.++.+|.+.|++++|.++|+++.+..|+++.
T Consensus 367 -~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 367 -DR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp -HH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred -hh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 22 133566666666666655 234556666666666666666666666666665554443
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=1.4e-10 Score=84.87 Aligned_cols=136 Identities=10% Similarity=0.119 Sum_probs=110.2
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+.. .+.+..+|+.+..++.+.|++++|...|+++.+ . .| +..+|..+..++.+.|++++|...++.
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-L--QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666644 233678899999999999999999999999876 3 35 577889999999999999999999999
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+. .. .+.+..+|..+...|.+. +.+..+|..+..+|.+.|++++|...++++.+..|+.+.
T Consensus 297 al-~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 297 AL-RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HH-HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HH-hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 98 32 245788888898888876 345678999999999999999999999999988887665
Q ss_pred Cc
Q 047113 141 YY 142 (145)
Q Consensus 141 ~~ 142 (145)
.|
T Consensus 375 a~ 376 (388)
T 1w3b_A 375 AY 376 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.11 E-value=4.1e-10 Score=83.53 Aligned_cols=135 Identities=6% Similarity=-0.028 Sum_probs=105.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHH------------HHHhhcc
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSI------------LFACSYS 65 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~l------------l~~~~~~ 65 (145)
++|.+.|+.+. +.+..+|..+...+.+.|++++|...|+++.. . .|+ ...+..+ ...+.+.
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-L--DQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777663 34678899999999999999999999998865 3 343 4444444 7888899
Q ss_pred chHHHHHHHHHHhhhhcCcCcc-----HHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhH
Q 047113 66 GLIEEGIKVFDIMVHDFQLDLN-----LEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKI 123 (145)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~ 123 (145)
|++++|...|+.+. . +.|+ ...|..+..+|.+. +.+...|..+..+|...|++++
T Consensus 271 g~~~~A~~~~~~~l-~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 271 GRYTDATSKYESVM-K--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp TCHHHHHHHHHHHH-H--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHH-h--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999999988 3 3343 45777888888776 4467899999999999999999
Q ss_pred HHHHHccCCCCCCCCCCCc
Q 047113 124 GELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~ 142 (145)
|...++++.+..|+++..+
T Consensus 348 A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHhCcchHHHH
Confidence 9999999999888776543
No 9
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=4.4e-09 Score=68.40 Aligned_cols=139 Identities=10% Similarity=-0.072 Sum_probs=113.3
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+.+.. .+...|..+...+.+.|++++|...|+.... .. +.+...+..+...+...|+++.|...++..
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-DA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 578888887754 3677899999999999999999999999876 32 336778899999999999999999999998
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
. .. .+.+...+..+..+|.+. +.+..++..+...+...|++++|...+++..+..|+++..
T Consensus 103 ~-~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 103 A-EA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp H-HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred H-hc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 8 32 234677788888777766 4466789999999999999999999999988877766655
Q ss_pred ccc
Q 047113 142 YTS 144 (145)
Q Consensus 142 ~~~ 144 (145)
..+
T Consensus 181 ~~~ 183 (186)
T 3as5_A 181 LAL 183 (186)
T ss_dssp GGG
T ss_pred Hhh
Confidence 443
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.03 E-value=5.5e-09 Score=71.79 Aligned_cols=135 Identities=9% Similarity=-0.115 Sum_probs=88.1
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|++.. +.+...|..+...+.+.|++++|...|++... .. +.+...+..+...+...|++++|...++.+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-SD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666542 23566777777777777888888887777655 32 225667777777777777777777777777
Q ss_pred hhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 79 VHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
. ..+..| +...+..+..+|.+. +.+...|..+...|...|++++|...++++.+..|+++
T Consensus 132 ~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 132 S-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp T-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred H-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 7 333344 455666666666554 33455666777777777777777777777666555443
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.03 E-value=3e-09 Score=77.76 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVD 96 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~ 96 (145)
|..+...+.+.|++++|...|++... +.| +..++..+..++.+.|+++.|...|+++. . ..| +..+|..+..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~--~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-E--LQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--TCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hCCCCHHHHHHHHH
Confidence 33333333444444444444443322 234 35667777777777778888888777777 3 233 4566777777
Q ss_pred HHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 97 LLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 97 ~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+|.+. +++..+|+.+...+...|++++|...++++.+..|+++..
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77655 5566788888888888888888888888888877765543
No 12
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.00 E-value=4.5e-11 Score=89.99 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=12.3
Q ss_pred CchHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 1 MDDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 1 ~~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
+++|.++++++..|+ +|+.|..++.+.|++++|++.|.. .+|..+|..++.+|...|.+++|...++...
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar- 88 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR- 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence 478889999986654 999999999999999999999964 2678899999999999999999999887776
Q ss_pred hcCcCccHHHHHHHHHHHhcC-----------CCchhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 81 DFQLDLNLEHYGITVDLLATG-----------ETEPYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
+ ..++..+.+.|+.+|++. .|+..+|+.+...|...|++++|...|..+
T Consensus 89 k--~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 89 K--KARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT
T ss_pred H--hCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3 256688899999999998 788889999999999999999999999876
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=1.6e-08 Score=72.22 Aligned_cols=129 Identities=7% Similarity=-0.082 Sum_probs=59.3
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHH---HHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTF---LSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|.+.|+. +.+...|..+...+.+.|++++|...|+.+.+ . .|+.... ...+......|++++|..+|+++.
T Consensus 119 ~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 119 AALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 44444444 23444555555555555555555555555544 2 2332111 112222233455555555555555
Q ss_pred hhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhH-HHHHHccCCCCCCCC
Q 047113 80 HDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKI-GELVAKDPFHLDPKN 138 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~ 138 (145)
.. .+.+...|+.+..+|.+. +.+..++..++..+...|+.++ +.++++++.+..|++
T Consensus 194 -~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 194 -DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp -HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred -Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 21 223444555555544444 2234455555555555555543 345555555555544
No 14
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=2e-08 Score=61.67 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
.|..+...+.+.|++++|..+|+++.. .. +.+...+..+...+...|+++.|...++.+. ..+ ..+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC-CCchHHHHHHHHH
Confidence 345555555555555555555555543 22 1234455555555555555555555555555 211 2234444444444
Q ss_pred HhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 98 LATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 98 ~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
|.+. +.+..++..+...+...|++++|...++++.+..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 4443 335667888889999999999999999988776664
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.97 E-value=4.1e-09 Score=78.13 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=72.6
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|.++|+.+. +.+..+|..+..++.+.|++++|...|+.+.+ .+ +.+...+..+..++.+.|+++.|...|+.+.
T Consensus 44 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 44 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555432 22445555555555555555555555555544 22 1134455555555555555555555555554
Q ss_pred hhcC-----------------------------------------------c-CccHHHHHHHHHHHhcC----------
Q 047113 80 HDFQ-----------------------------------------------L-DLNLEHYGITVDLLATG---------- 101 (145)
Q Consensus 80 ~~~~-----------------------------------------------~-~~~~~~~~~li~~~~~~---------- 101 (145)
... . +.+...+..+..+|.+.
T Consensus 122 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 122 -KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp -TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred -hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 111 1 12344455555555544
Q ss_pred -------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 102 -------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 102 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+.+..+|..+...|...|++++|...++++.+..|+++
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 44566777777777777777777777777766666544
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.97 E-value=6.1e-09 Score=71.54 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=112.1
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|++.. +.+...|..+...+.+.|++++|...|+++.. .+..| +...+..+...+.+.|+++.|...++.
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46777777653 34678899999999999999999999999866 55566 567888999999999999999999999
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.. ... ..+...+..+..+|.+. +.+...+..+...+...|++++|...++++.+..|+++.
T Consensus 167 ~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 167 SL-RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HH-hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 88 332 23577788888888766 446678888999999999999999999999888887654
Q ss_pred C
Q 047113 141 Y 141 (145)
Q Consensus 141 ~ 141 (145)
.
T Consensus 245 ~ 245 (252)
T 2ho1_A 245 Y 245 (252)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.96 E-value=7.4e-09 Score=69.50 Aligned_cols=135 Identities=10% Similarity=-0.080 Sum_probs=97.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc-chHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS-GLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~ 77 (145)
++|.+.|+... +.+...|..+...+...|++++|...|+.... .. +.+...+..+...+... |+++.|...++.
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDK 102 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45667776543 33567888888888888888888888888765 32 23567788888888888 888888888888
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC-CC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP-KN 138 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~ 138 (145)
+. ..+..| +...+..+..+|.+. +.+...+..+...+...|++++|...+++..+..| ++
T Consensus 103 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 181 (225)
T 2vq2_A 103 AL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181 (225)
T ss_dssp HH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred HH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 88 433333 366677777777665 33466777888888888888888888887776665 44
Q ss_pred C
Q 047113 139 D 139 (145)
Q Consensus 139 ~ 139 (145)
+
T Consensus 182 ~ 182 (225)
T 2vq2_A 182 A 182 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.96 E-value=6.1e-09 Score=68.59 Aligned_cols=134 Identities=12% Similarity=0.013 Sum_probs=83.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|++.- +.+...|..+...+.+.|++++|...+..... .. +-+...+..+-..+...++++.+...+...
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LD-TTSAEAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666442 23556677777777777777777777766544 22 124455555666666667777777766666
Q ss_pred hhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 79 VHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
. . ..| +...+..+..+|.+. +.+..+|..+-..|.+.|++++|...|++..+.+|+++.
T Consensus 100 ~-~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 100 I-A--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp H-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred H-H--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 5 2 222 455566666666554 345567777777777778888888877777777765543
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.94 E-value=5e-09 Score=74.78 Aligned_cols=131 Identities=12% Similarity=-0.008 Sum_probs=100.6
Q ss_pred chHHHHhccCC----CC-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGII----DK-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~----~~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+++- .| +...+..+-.++.+.|++++|++.|++ ..+...+..+...+.+.|+++.|...++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777887652 24 556677777899999999999999975 3577889999999999999999999999
Q ss_pred HhhhhcCcCccHH---HHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 77 IMVHDFQLDLNLE---HYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 77 ~m~~~~~~~~~~~---~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.+. .. .|+.. ...+++..+... +.+...|+.+..++.+.|++++|...+++..+..|
T Consensus 155 ~~~-~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQ-DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHH-HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHH-hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 998 33 35432 112233333221 55778999999999999999999999999999999
Q ss_pred CCCCCc
Q 047113 137 KNDAYY 142 (145)
Q Consensus 137 ~~~~~~ 142 (145)
+++..+
T Consensus 232 ~~~~~l 237 (291)
T 3mkr_A 232 GHPETL 237 (291)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 877544
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.94 E-value=2.1e-09 Score=77.96 Aligned_cols=137 Identities=8% Similarity=0.047 Sum_probs=83.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+.+. +.+..+|..+...+.+.|++++|...|++... .. +.+...+..+...+...|+++.|...++++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE-LQ-PNNLKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 45666666542 23556677777777777777777777776654 22 224566666666677777766666666665
Q ss_pred hhhc-----------------------------------------CcCc---cHHHHHHHHHHHhcC-------------
Q 047113 79 VHDF-----------------------------------------QLDL---NLEHYGITVDLLATG------------- 101 (145)
Q Consensus 79 ~~~~-----------------------------------------~~~~---~~~~~~~li~~~~~~------------- 101 (145)
.... ...| +..+|..+...|.+.
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5210 0011 455666666666554
Q ss_pred ----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 102 ----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 102 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+.+..+|+.+..+|...|++++|...+++..+..|+++.
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 282 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 334567777777777777777777777776666665543
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.94 E-value=1e-08 Score=67.51 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=100.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
++.+|..|-..|.+.|++++|+..|++..+ . .| +...+..+-..+.+.|+++.|...+.... ... ..+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-A--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFV-VLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-chhHHHHHH
Confidence 567899999999999999999999999876 3 45 67789999999999999999999999987 322 223555555
Q ss_pred HHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 94 TVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 94 li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+...+... +.+...+..+-..|.+.|++++|...+++..+..|+++..+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 144 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY 144 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHH
Confidence 55555544 44677899999999999999999999999999999876554
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.92 E-value=1e-08 Score=69.78 Aligned_cols=133 Identities=10% Similarity=0.011 Sum_probs=77.1
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|.+.|+... +.+...|..+...+.+.|++++|...|++..+ .. +.+...+..+...+.+.|+++.|...++...
T Consensus 75 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR-AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445554332 23455666666666666666666666666554 22 2245556666666666666666666666665
Q ss_pred hhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 80 HDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
... ..+...+..+..+|.+. +.+..+|..+...|...|++++|...++++.+..|+++
T Consensus 153 -~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 153 -ELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp -HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred -HhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 211 22344555555555443 33455677777777777777777777777766666554
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.90 E-value=3e-08 Score=70.21 Aligned_cols=138 Identities=8% Similarity=-0.069 Sum_probs=93.3
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|++... .. +.+...+..+...+...|++++|...++..
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS-IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34555555442 22445666677777777777777777777654 22 235667777777888888888888888777
Q ss_pred hhhcC-------cCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 79 VHDFQ-------LDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 79 ~~~~~-------~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
..... ...+...|..+..+|.+. +.+..+|..+...|...|++++|...+++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 63210 123356777777777665 445667888888888888888888888888888
Q ss_pred CCCCCCC
Q 047113 135 DPKNDAY 141 (145)
Q Consensus 135 ~~~~~~~ 141 (145)
.|+++..
T Consensus 300 ~p~~~~~ 306 (330)
T 3hym_B 300 RRDDTFS 306 (330)
T ss_dssp CSCCHHH
T ss_pred CCCchHH
Confidence 8766543
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.89 E-value=1.7e-08 Score=68.74 Aligned_cols=135 Identities=14% Similarity=0.026 Sum_probs=109.0
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhcc-----------c
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYS-----------G 66 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~-----------~ 66 (145)
++|...|+.. .+.+...|..+-.++.+.|++++|...|++..+ . .| +...+..+-..+.+. |
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-R--TPRYLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 5677888854 334678899999999999999999999999866 3 45 567888888889999 9
Q ss_pred hHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 67 LIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
++++|...+++.. + +.| +...|..+..+|.+. ..+...|..+-..|...|++++|...++
T Consensus 99 ~~~~A~~~~~~al-~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 99 YLEQALSVLKDAE-R--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-H--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988 3 345 467777777777765 3456788889999999999999999999
Q ss_pred cCCCCCCCCCCCc
Q 047113 130 DPFHLDPKNDAYY 142 (145)
Q Consensus 130 ~~~~~~~~~~~~~ 142 (145)
+..+..|+++..+
T Consensus 176 ~al~~~P~~~~~~ 188 (217)
T 2pl2_A 176 KALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHSTTCHHHH
T ss_pred HHHHhCCCChHHH
Confidence 9988888776543
No 25
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.87 E-value=1.5e-08 Score=68.97 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=107.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|...|++.. +.+...|..+...+.+.|++++|...|++... .. +.+...+..+...+...|+++.|...++..
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE-LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666542 34678899999999999999999999999876 33 336788899999999999999999999999
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
. +.. ..+...+..+...|.+. +.+...+..+...+...|++++|...+++..+..|+++.
T Consensus 118 ~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (243)
T 2q7f_A 118 L-RAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194 (243)
T ss_dssp H-HHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred H-HhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 8 322 33567788888877766 446778999999999999999999999998887776544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.86 E-value=6.9e-09 Score=75.17 Aligned_cols=122 Identities=8% Similarity=-0.044 Sum_probs=95.2
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+...|..+...+.+.|++++|...|+++.. .. +.+...|..+...+.+.|+++.|...|++.. ... +.+...|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHH
Confidence 566799999999999999999999999876 33 3378899999999999999999999999998 322 2357788888
Q ss_pred HHHHhcC------------------------------------------------------------CC---chhhHHHH
Q 047113 95 VDLLATG------------------------------------------------------------ET---EPYVWGAL 111 (145)
Q Consensus 95 i~~~~~~------------------------------------------------------------~p---~~~~~~~l 111 (145)
..+|.+. .| +..+|..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888766 11 45566777
Q ss_pred HHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 112 LGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 112 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
...|...|++++|...+++..+..|+++.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 77777777777777777776666665543
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.85 E-value=3.1e-08 Score=66.38 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=110.7
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHc-CChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIH-GQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~-g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+... +.+..+|..+...+... |++++|...|+.+.. .+..|+ ...+..+...+...|+++.|...++
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46777777553 34677899999999999 999999999999876 545554 6788999999999999999999999
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcC-----------------C-CchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATG-----------------E-TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~-----------------~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
.+. ... +.+...+..+..+|.+. + .+...+..+...+...|+.+++...++.+.+..|++
T Consensus 138 ~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 138 RSL-AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH-HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 998 322 23477788888877765 4 567788888888899999999999999988888876
Q ss_pred CCC
Q 047113 139 DAY 141 (145)
Q Consensus 139 ~~~ 141 (145)
+..
T Consensus 216 ~~~ 218 (225)
T 2vq2_A 216 EEL 218 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.81 E-value=6.5e-08 Score=68.42 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=89.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|++... .. +.+...+..+...+...|+++.|...++..
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34666666442 23456677777777777777777777777655 32 223455666777777777777777777777
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC----------------C---------Cc-hhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG----------------E---------TE-PYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~----------------~---------p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
. ... +.+...+..+...|.+. . |+ ..+|..+...|...|++++|...+++..
T Consensus 186 l-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 186 L-SIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp H-TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H-HhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6 221 23466666776666655 0 32 3577777788888888888888888777
Q ss_pred CCCCCCCCC
Q 047113 133 HLDPKNDAY 141 (145)
Q Consensus 133 ~~~~~~~~~ 141 (145)
+..|+++..
T Consensus 264 ~~~~~~~~~ 272 (330)
T 3hym_B 264 VLIPQNAST 272 (330)
T ss_dssp HHSTTCSHH
T ss_pred hhCccchHH
Confidence 766665543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.80 E-value=1.7e-08 Score=72.76 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=52.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|...|+.+. +.+...|..+..++.+.|++++|...|++... .. +.+..++..+...+...|+++.|...++.+
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE-LK-PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666676553 23566777777777788888888888777765 33 235667777777777777777777777766
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 159 ~ 159 (368)
T 1fch_A 159 L 159 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 30
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.78 E-value=2.2e-08 Score=79.91 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~ 93 (145)
...|+.|-.++.+.|++++|+..|++..+ +.| +...|+.+-.++.+.|++++|...|++.. + +.| +...|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~--l~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI-R--ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCCHHHHHH
Confidence 45666666666666666666666666544 234 35566666666666666666666666665 2 334 3555666
Q ss_pred HHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 94 TVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 94 li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+..+|.+. .| +...|+.+-.+|.+.|++++|+..+++..+++|+++..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 66655554 33 44566666677777777777777777766666655443
No 31
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=1.2e-08 Score=65.78 Aligned_cols=120 Identities=8% Similarity=-0.057 Sum_probs=95.1
Q ss_pred chHHHHhccCCC--C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|....+ | +...|-.+-..|.+.|++++|...|+...+ +.| +...|..+-.++.+.|+++.|...|+.
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 567777776544 2 455677888999999999999999999876 345 678999999999999999999999999
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHH-HccCCCCCCCCCCCcc
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELV-AKDPFHLDPKNDAYYT 143 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~ 143 (145)
.. + +.|+ +...|..+-..|.+.|+.++|... +++..++.|+++..|.
T Consensus 91 al-~--~~p~----------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 91 SV-E--LNPT----------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HH-H--HCTT----------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred HH-H--hCCC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 88 3 3443 566777788888999998776554 5888888998876553
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.3e-08 Score=68.36 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=36.1
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC--CCCc----HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD--GKPN----NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~--~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++...|..+..++.+.|++++|...|+.... .. ..|+ ...+..+...+...|+++.|...++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVE-QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455566666666666666666666665443 11 0011 3555566666666666666666666555
No 33
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=3.6e-08 Score=61.81 Aligned_cols=106 Identities=10% Similarity=0.018 Sum_probs=90.1
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
....|...-..+.+.|++++|+..|++..+ .. +.+...|..+-.++.+.|+++.|...++... + +.|
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~--~~p-------- 78 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-RD-PENAILYSNRAACLTKLMEFQRALDDCDTCI-R--LDS-------- 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCT--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHH-H--hhh--------
Confidence 345788999999999999999999999766 33 2368899999999999999999999999988 3 333
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
.+...|..+-.+|...|++++|...|++..+++|+++..
T Consensus 79 --------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 79 --------KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 256678888899999999999999999999999987654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.74 E-value=1.9e-07 Score=65.88 Aligned_cols=130 Identities=5% Similarity=0.015 Sum_probs=105.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|++... .. +.+...+..+...+...|++++|...++..
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-LR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777653 34678899999999999999999999999876 33 336788999999999999999999999998
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC----------------CC-------------chhhHHHHHHHHHhccChhHHHHHHc
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG----------------ET-------------EPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~----------------~p-------------~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
. ... +.+...|..+..+|.+. .| +..+|..+..++.+.|++++|..+++
T Consensus 233 ~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 L-DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp H-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred H-HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8 322 33577888888888776 33 46789999999999999999999999
Q ss_pred cCCCCC
Q 047113 130 DPFHLD 135 (145)
Q Consensus 130 ~~~~~~ 135 (145)
+..+..
T Consensus 311 ~~l~~~ 316 (327)
T 3cv0_A 311 QNVEPF 316 (327)
T ss_dssp CCSHHH
T ss_pred HHHHhc
Confidence 877643
No 35
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=5.7e-08 Score=63.07 Aligned_cols=102 Identities=7% Similarity=-0.119 Sum_probs=88.2
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
+...|..+-..+.+.|++++|...|+.... . .| +...|..+-.++...|++++|...|++.. . +.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al-~--l~P~------ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-Y--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF-A--LGKN------ 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HSSS------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH-h--hCCC------
Confidence 566889999999999999999999999876 3 45 68889999999999999999999999998 2 4443
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+...|..+-.+|...|++++|...|++..+..|+.
T Consensus 103 ----------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 ----------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ----------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 66778888899999999999999999988877754
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.71 E-value=1.9e-07 Score=66.52 Aligned_cols=133 Identities=14% Similarity=0.021 Sum_probs=89.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|+.... . .| +...+..+...+...|+++.|...++.
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-L--KMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--CCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46677777553 23566788888888888888888888888765 3 34 566778888888888888888888888
Q ss_pred hhhhcCcCc----cHHHHHHH------------HHHHhcC-----------------CCchhhHHHHHHHHHhccChhHH
Q 047113 78 MVHDFQLDL----NLEHYGIT------------VDLLATG-----------------ETEPYVWGALLGACRIHHNVKIG 124 (145)
Q Consensus 78 m~~~~~~~~----~~~~~~~l------------i~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a 124 (145)
.. . ..| +...+..+ ...+.+. +.+...+..+...+...|++++|
T Consensus 97 ~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 97 VL-K--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HH-T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HH-h--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 77 2 234 33344333 2223222 34556677777777777777777
Q ss_pred HHHHccCCCCCCCCCC
Q 047113 125 ELVAKDPFHLDPKNDA 140 (145)
Q Consensus 125 ~~~~~~~~~~~~~~~~ 140 (145)
...+++..+..|+++.
T Consensus 174 ~~~~~~~~~~~~~~~~ 189 (359)
T 3ieg_A 174 ISDLKAASKLKSDNTE 189 (359)
T ss_dssp HHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 7777777766665543
No 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.71 E-value=8.2e-08 Score=72.85 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=110.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc---------chHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS---------GLIE 69 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~---------~~~~ 69 (145)
++|.+.|++.. +.+...|..+-.+|.+.|++++|...|+...+ +.|+...+..+-..+... |+++
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~ 196 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVM 196 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHH
Confidence 67888888653 34678999999999999999999999999866 458888899999999999 9999
Q ss_pred HHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhc-----------C-------------CC----chhhHHHHHHHHHhccC
Q 047113 70 EGIKVFDIMVHDFQLDL-NLEHYGITVDLLAT-----------G-------------ET----EPYVWGALLGACRIHHN 120 (145)
Q Consensus 70 ~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~-----------~-------------~p----~~~~~~~li~~~~~~g~ 120 (145)
+|...+++.. + +.| +...|..+..+|.+ . .| +...|..+-.+|...|+
T Consensus 197 ~A~~~~~~al-~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 197 DSVRQAKLAV-Q--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999988 3 344 46777777777642 1 44 67889999999999999
Q ss_pred hhHHHHHHccCCCCCCCCCCC
Q 047113 121 VKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+++|...|++..+..|+++..
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999888876543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.70 E-value=1.3e-07 Score=64.31 Aligned_cols=125 Identities=9% Similarity=-0.054 Sum_probs=89.6
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHc-----------CChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccc
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIH-----------GQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSG 66 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~-----------g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~ 66 (145)
++|...|+.. .+.+...|..+-.++.+. |++++|...|+...+ +.| +...+..+-..+...|
T Consensus 56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcC
Confidence 4677777754 334677899999999999 999999999999866 345 5778888889999999
Q ss_pred hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 67 LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
++++|...|++.. ... .+...+..+..+|.+. +.+...+..+...+...|++++|...++
T Consensus 133 ~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998 545 6778888888777665 4466789999999999999999999988
Q ss_pred cCC
Q 047113 130 DPF 132 (145)
Q Consensus 130 ~~~ 132 (145)
+..
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 753
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.69 E-value=2.5e-07 Score=63.96 Aligned_cols=133 Identities=12% Similarity=-0.003 Sum_probs=98.7
Q ss_pred chHHHHhccCCC-------CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-------KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-------~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+.|+.+.. .+..+|..+...+.+.|++++|...|++... .. +.+...|..+...+...|+++.|...
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-IR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 567777775533 1467899999999999999999999999876 33 23678899999999999999999999
Q ss_pred HHHhhhhcCcCccHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 75 FDIMVHDFQLDLNLEHYGITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 75 ~~~m~~~~~~~~~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+++.. ... +.+...|..+..+|.+. .|+.......+..+...|++++|...+++.....|++
T Consensus 100 ~~~al-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 100 FDSVL-ELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHH-hcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 99998 321 22567777777777766 4554444455555667788888888887766655544
No 40
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=4.3e-07 Score=54.12 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=88.0
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
+.+...|..+...+.+.|++++|...|++..+ .. +.+...+..+-..+...|+++.|...+++.. .. .|+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~--~~~----- 72 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NV--IED----- 72 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--SCC-----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--Ccc-----
Confidence 34567888999999999999999999999876 33 3367788889999999999999999999988 32 221
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhc-cChhHHHHHHccCCCCCCCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIH-HNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..+...|..+...+... |++++|.+.+++..+..|+++
T Consensus 73 ---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 73 ---------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ---------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ---------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 01456777788899999 999999999999999888654
No 41
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1e-07 Score=57.88 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|..+...+.+.|++++|...|+++.. .. +.+...+..+...+.+.|+++.|...++.+. .. .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~--~~--------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-EL--DP--------- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CT---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh--CC---------
Confidence 56899999999999999999999999876 33 3367788999999999999999999999988 32 22
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.+..+|..+...|...|++++|...++++.+..|+++.
T Consensus 75 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 75 -------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp -------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 24556777888899999999999999998888776654
No 42
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.66 E-value=2e-07 Score=63.03 Aligned_cols=131 Identities=9% Similarity=0.016 Sum_probs=100.4
Q ss_pred chHHHHhccCCC--C-chhhHHH----------------HHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K-NVVIWSG----------------MIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFA 61 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~~~~~----------------li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~ 61 (145)
++|...|+.... | +...|.. +-.++.+.|++++|...|++..+ . .| +...+..+-..
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-K--APNNVDCLEACAEM 97 (208)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHH
Confidence 467777776532 3 4556666 89999999999999999999876 3 45 67899999999
Q ss_pred hhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCch--hhHHHHHHHHHhccChh
Q 047113 62 CSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG----------------ETEP--YVWGALLGACRIHHNVK 122 (145)
Q Consensus 62 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~--~~~~~li~~~~~~g~~~ 122 (145)
+...|+++.|...|++.. . +.| +...|..+..+|... .|+. ..+..+-.++...|+++
T Consensus 98 ~~~~g~~~~A~~~~~~al-~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~ 174 (208)
T 3urz_A 98 QVCRGQEKDALRMYEKIL-Q--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYE 174 (208)
T ss_dssp HHHHTCHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHcCCHHHHHHHHHHHH-H--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHH
Confidence 999999999999999998 3 455 577787777766422 3332 33444455667789999
Q ss_pred HHHHHHccCCCCCCCC
Q 047113 123 IGELVAKDPFHLDPKN 138 (145)
Q Consensus 123 ~a~~~~~~~~~~~~~~ 138 (145)
+|...|++..++.|+.
T Consensus 175 ~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 175 KARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHhCCCH
Confidence 9999999999998853
No 43
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=8.2e-07 Score=59.40 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=92.6
Q ss_pred chHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhh
Q 047113 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
++|.+.|++..+++...|..+...+.+.|++++|...|++... .. +.+...+..+-.++...|+++.|...|+.....
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 23 KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 5688888877777888888899999999999999999988765 33 336678888888888999999999988888721
Q ss_pred cCcCccHHHHHHHHHHHhcCCC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 82 FQLDLNLEHYGITVDLLATGET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
..-.+... |..+. ....| ....|..+-.+|...|++++|...+++..+..|+.
T Consensus 101 ~~~~~~~~-~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 101 LRGNQLID-YKILG---LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTTCSEEE-CGGGT---BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CCCccHHH-HHHhc---cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 11110000 00000 00011 33577788888999999999999999888877743
No 44
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.65 E-value=4.5e-07 Score=65.26 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=101.3
Q ss_pred chHHHHhccCCC--C---chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K---NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~---~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+.+.. | +..+|..+...+.+.|++++|...|++... .. +.+...+..+...+.+.|+++.|...++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VR-PNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467777776532 3 477899999999999999999999999876 32 3357899999999999999999999999
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcC-----------------CCc-----------hhhHHHHHHHHHhccChhHHHHHH
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATG-----------------ETE-----------PYVWGALLGACRIHHNVKIGELVA 128 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~-----------~~~~~~li~~~~~~g~~~~a~~~~ 128 (145)
... ... +.+...+..+..+|.+. +.+ ..+|..+..+|...|+.++|..++
T Consensus 276 ~al-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 276 RAL-ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 988 321 23577788888888766 222 578999999999999999999988
Q ss_pred ccCC
Q 047113 129 KDPF 132 (145)
Q Consensus 129 ~~~~ 132 (145)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 8644
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.65 E-value=2.3e-07 Score=64.08 Aligned_cols=134 Identities=16% Similarity=-0.011 Sum_probs=92.0
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|+.... .. +.+...+..+...+.+.|++++|...++.+
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45666676542 34577888888888888888888888888765 32 225677788888888888888888888887
Q ss_pred hhhcCcCccHHHHHH---------------------------------HHHHHhcC----------------CC-----c
Q 047113 79 VHDFQLDLNLEHYGI---------------------------------TVDLLATG----------------ET-----E 104 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~---------------------------------li~~~~~~----------------~p-----~ 104 (145)
. + ..|+...... ++..+... .| +
T Consensus 138 ~-~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 138 Y-Q--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp H-H--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred H-H--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 7 2 2232221111 11111111 11 2
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 105 PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 105 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
..+|..+...|.+.|++++|...+++..+..|++..
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 578889999999999999999999999998886543
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.65 E-value=9.4e-08 Score=72.21 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=88.0
Q ss_pred chHHHHhccCCC--C-c-------hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHH
Q 047113 2 DDAERIFGGIID--K-N-------VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~-------~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 71 (145)
++|.++|+.+.. | + ..+|..+...+...|++++|...|+.... . .|+...+..+...+...|+++.|
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-L--HPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-c--CCCchHHHHHHHHHHHhcCHHHH
Confidence 356666665533 2 2 22466666777777888888888887765 2 45566777777778888888888
Q ss_pred HHHHHHhhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 72 IKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 72 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
...++... ... +.+..+|..+...|.+. +.+...|..+...|...|++++|...++++.+.
T Consensus 296 ~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAV-DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888777 222 22466677777666655 334456777777777777777777777776666
Q ss_pred CCCCCC
Q 047113 135 DPKNDA 140 (145)
Q Consensus 135 ~~~~~~ 140 (145)
.|+++.
T Consensus 374 ~~~~~~ 379 (537)
T 3fp2_A 374 FPTLPE 379 (537)
T ss_dssp CTTCTH
T ss_pred CCCChH
Confidence 665543
No 47
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.65 E-value=1.3e-08 Score=76.63 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+. .|..|+
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA 155 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLA 155 (449)
T ss_dssp ---------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHTT----------CHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHH
Confidence 3444555555555555555444442 2444455555555555555555555555442 233344
Q ss_pred HHHhcC------------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 96 DLLATG------------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 96 ~~~~~~------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
+++.+. -.+..+|..++.+|...|+++.|.....
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 444333 2245556666666665555555544333
No 48
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.63 E-value=9.8e-08 Score=67.43 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=53.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.++|+.+. +.+...|..+..++.+.|++++|...|++..+ .. +.+...+..+...+...|+++.|...++..
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LD-PKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777777653 23566777788888888888888888887765 32 235667777777777777777777777766
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 116 ~ 116 (327)
T 3cv0_A 116 L 116 (327)
T ss_dssp H
T ss_pred H
Confidence 5
No 49
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=5.1e-07 Score=69.60 Aligned_cols=137 Identities=10% Similarity=-0.009 Sum_probs=103.7
Q ss_pred CchHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 1 MDDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 1 ~~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+++|.+.|++... .+...|..+-..+.+.|++++|...|++..+ ..| +...+..+-..+.+.|++++|...++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3678888886643 3577899999999999999999999999865 345 57789999999999999999999999
Q ss_pred HhhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhc---cChhHHHHHHccCCCCC
Q 047113 77 IMVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIH---HNVKIGELVAKDPFHLD 135 (145)
Q Consensus 77 ~m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 135 (145)
+.. . ..| +...|..+..+|.+. +.+...+..+...+... |+.++|...+++..+..
T Consensus 82 ~al-~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QAS-D--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHH-h--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998 3 234 577888888888776 44567889999999999 99999999999998888
Q ss_pred CCCCCCcc
Q 047113 136 PKNDAYYT 143 (145)
Q Consensus 136 ~~~~~~~~ 143 (145)
|.....+.
T Consensus 159 p~~~~~~~ 166 (568)
T 2vsy_A 159 VGAVEPFA 166 (568)
T ss_dssp CCCSCHHH
T ss_pred CcccChHH
Confidence 86655443
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.62 E-value=5e-07 Score=61.30 Aligned_cols=119 Identities=11% Similarity=-0.024 Sum_probs=79.9
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~ 93 (145)
|...|..+-..+.+.|++++|...|+.... ..-.++...+..+-.++...|++++|...++... . ..| +...|..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~--~~p~~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-K--KNYNLANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--TTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-H--hCcchHHHHHH
Confidence 445666666667777777777777776655 3322455555556666677777777777777666 2 233 4555666
Q ss_pred HHHHHhcC----------------CC-ch-------hhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 94 TVDLLATG----------------ET-EP-------YVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 94 li~~~~~~----------------~p-~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+..+|.+. .| +. ..|..+-..+...|++++|...+++..+..|+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 66666555 23 33 45777778888999999999999999988886
No 51
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=1.9e-07 Score=60.01 Aligned_cols=106 Identities=12% Similarity=0.016 Sum_probs=87.7
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+...|..+-..+.+.|++++|...|+.... .. +.+...|..+-.++...|++++|...|++.. . +.|+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--l~p~------- 87 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA-V--MDIX------- 87 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HSTT-------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h--cCCC-------
Confidence 566788899999999999999999999865 32 2377788889999999999999999999988 3 2332
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+...|..+-.+|...|++++|...|++..+..|+++..
T Consensus 88 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 ---------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp ---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred ---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 55677778888999999999999999988887766543
No 52
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3e-07 Score=68.91 Aligned_cols=62 Identities=5% Similarity=-0.048 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
...|..+...+.+.|++++|...|+.+.. .. +.+...+..+...+.+.|+++.|...++.+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKR-KF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHH-HS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-Hc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444455555555555544433 11 1133344444444555555555555554444
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.61 E-value=8.4e-07 Score=63.19 Aligned_cols=123 Identities=6% Similarity=-0.052 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHH------------HHHHHhhccchHHHHHHHHHHhhhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFL------------SILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~------------~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
+...|..+...+.+.|++++|...|+...+ . .| +...+. .+...+.+.|++++|...++.....
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLK-L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555555555555666666665555543 1 12 222222 1133455556666666666655521
Q ss_pred cCcCccH--HHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 82 FQLDLNL--EHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 82 ~~~~~~~--~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
..-.+.. ..+..+..+|.+. +.+..+|..+...|...|++++|...+++..+..|+++.
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 1111110 1223344444443 335667777888888888888888888887777776554
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.60 E-value=1.5e-07 Score=71.04 Aligned_cols=137 Identities=12% Similarity=-0.043 Sum_probs=108.9
Q ss_pred chHHHHhccCC--CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 2 DDAERIFGGII--DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 2 ~~A~~~f~~m~--~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++|.+.|+... .|+...|..+...+.+.|++++|...|+.... .. +.+...+..+...+...|+++.|...++...
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVD-LN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46677777553 35677899999999999999999999999876 33 2367789999999999999999999999998
Q ss_pred hhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 80 HDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
... +.+...|..+..+|.+. +.+...|..+...+...|++++|...++++.+..|+++..+
T Consensus 338 -~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 -SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp -HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred -HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 322 22467788888887766 44567899999999999999999999999888666555443
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=6.9e-08 Score=66.00 Aligned_cols=131 Identities=8% Similarity=-0.039 Sum_probs=102.0
Q ss_pred chHHHHhccCCC--C-c-------hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC------------------------
Q 047113 2 DDAERIFGGIID--K-N-------VVIWSGMIASHAIHGQEREALEAFYLVIHCSD------------------------ 47 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~-------~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~------------------------ 47 (145)
++|.+.|+.... | + ...|..+...+.+.|++++|...|+.... ..
T Consensus 55 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCchhHHHHHHhHHHHHHHHHHHHHH
Confidence 456666665432 1 1 57899999999999999999999999865 32
Q ss_pred CCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-----------------CCchhhHH
Q 047113 48 GKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-----------------ETEPYVWG 109 (145)
Q Consensus 48 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------------~p~~~~~~ 109 (145)
..| +...+..+...+...|+++.|...++... ... +.+...|..+..+|.+. +.+..+|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 211 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 211 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 344 45577888888999999999999999988 322 33577788888888766 44567888
Q ss_pred HHHHHHHhccChhHHHHHHccCCCCC
Q 047113 110 ALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 110 ~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
.+...+...|++++|...+++..+..
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999887765
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.60 E-value=2.6e-07 Score=59.77 Aligned_cols=121 Identities=16% Similarity=0.011 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|..+...+.+.|++++|...|+++.. .. +.+...+..+...+...|+++.|...++... ... +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD-AD-AFDVDVALHLGIAYVKTGAVDRGTELLERSL-ADA-PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC-TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHH
Confidence 35688889999999999999999999854 22 3367888999999999999999999999998 322 33567777777
Q ss_pred HHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 96 DLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 96 ~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
..|... +.+...+..+...+...|++++|...+++..+..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 145 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence 777654 556778999999999999999999999998887776543
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.59 E-value=4.5e-07 Score=72.39 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=107.5
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|++. .+.+...|+.|-.++.+.|++++|+..|++..+ +.| +...|+.+-.++.+.|++++|.+.|++
T Consensus 26 ~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~k 102 (723)
T 4gyw_A 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788888855 334678999999999999999999999999866 356 577999999999999999999999999
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC----------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG----------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~----------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. + +.| +...|+.+..+|.+. .| +...|..+...+...|++++|.+.++++.+
T Consensus 103 Al-~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 103 AI-Q--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HH-H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88 3 455 478889998888877 44 567999999999999999999999887665
No 58
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=8.2e-08 Score=71.97 Aligned_cols=119 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|..+...+.+.|++++|...|++... .. |+...+..+...+...|+++.|...++... ... +.+...|..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL-KLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcC-cCCHHHHHHHH
Confidence 45677777777777777777777777655 33 335666667777777777777777777666 211 22455566666
Q ss_pred HHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 96 DLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 96 ~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.+|.+. +.+...|..+...|...|++++|...++++.+..|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 555554 22344555555666666666666666665555555443
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.57 E-value=3.9e-07 Score=62.98 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=86.9
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|+.... ..-.|+ ...|..+-..+...|+++.|...++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 56777777552 23556888888888899999999999888765 432222 2347888888888899999998888
Q ss_pred HhhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 77 IMVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 77 ~m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
... . ..| +...|..+...|.+. +.+...|..+...+...+++++|...+++..+..|++
T Consensus 99 ~a~-~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 99 AAV-D--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHH-H--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHH-h--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 887 3 223 345566666665554 2234455555423333446677777666666665544
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.56 E-value=6.3e-07 Score=61.95 Aligned_cols=122 Identities=8% Similarity=-0.036 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc--HHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN--LEHYGI 93 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~ 93 (145)
..+-..-..+.+.|++++|...|++..+ . .| +...+..+...+...|+++.|...++... ...-.|+ ...|..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA-K--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEY 79 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHH-T--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHH
Confidence 3455667888999999999999999876 3 34 45588888889999999999999999998 4332222 334777
Q ss_pred HHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 94 TVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 94 li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+...|.+. +.+..+|..+...|...|++++|...+++..+..|.++..+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 145 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH
Confidence 77777766 44667999999999999999999999999999888766543
No 61
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=3.1e-07 Score=58.28 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=88.8
Q ss_pred HHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhc
Q 047113 6 RIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDF 82 (145)
Q Consensus 6 ~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (145)
..|+.... .+...+..+-..+.+.|++++|...|+.... .. +.+...|..+-.++.+.|+++.|...|+... .
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~- 80 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-LD-HYDARYFLGLGACRQSLGLYEQALQSYSYGA-L- 80 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h-
Confidence 34554443 2456777888899999999999999999866 33 2367788888999999999999999999998 3
Q ss_pred CcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 83 QLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 83 ~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+.|+ +...|..+-.+|...|++++|...+++..+..|+++..
T Consensus 81 -~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 81 -MDIN----------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp -HCTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred -cCCC----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 2343 55667778888999999999999999988877766543
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.53 E-value=3.5e-06 Score=60.03 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=92.2
Q ss_pred chHHHHhccC----CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HH-HHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGI----IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NV-TFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m----~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
++|.++|++. .+.+...|..+...+.+.|++++|..+|++..+ +.|+ .. .|..+...+.+.|+++.|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5678888743 233566899999999999999999999999865 4564 33 7888888889999999999999
Q ss_pred HHhhhhcCcCccHHHHHHHHHHHh---cC---------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 76 DIMVHDFQLDLNLEHYGITVDLLA---TG---------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 76 ~~m~~~~~~~~~~~~~~~li~~~~---~~---------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
++.. ... .++...|........ .. +.+...|..++..+.+.|++++|+.+|++..+.
T Consensus 158 ~~a~-~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 158 KKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHH-hcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9888 322 223444544333321 11 445667888888888888888888888876663
No 63
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=5.1e-07 Score=58.45 Aligned_cols=106 Identities=11% Similarity=0.008 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+...|..+-..+.+.|++++|+..|++... .. +-+...|..+-.++.+.|+++.|...++... . +.|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~--~~p~------- 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS-IA-PANPIYLSNRAAAYSASGQHEKAAEDAELAT-V--VDPK------- 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--hCCC-------
Confidence 566899999999999999999999999876 33 2267889999999999999999999999988 3 2343
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+...|..+-.+|...|++++|...+++..++.|+++..
T Consensus 78 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 78 ---------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred ---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 55677778888888999999999999988888876653
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.52 E-value=2.4e-07 Score=68.75 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=83.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCC-hHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQ-EREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~-~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+..- +.+...|+.+-.++.+.|+ +++|+..|++... . .| +...|+.+-.++...|++++|...|+
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-E--QPKNYQVWHHRRVLVEWLRDPSQELEFIA 190 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45566666442 2356677777777777775 7777777777655 2 34 55667777777777777777777777
Q ss_pred HhhhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHh-ccChhHH-----HHHHccCC
Q 047113 77 IMVHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRI-HHNVKIG-----ELVAKDPF 132 (145)
Q Consensus 77 ~m~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~~~ 132 (145)
+.. . +.| +...|..+..++.+. +.+...|+.+-.++.+ .|..++| +..+++..
T Consensus 191 kal-~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 191 DIL-N--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHH-H--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHH-H--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 776 2 334 455666555555443 3345667777777776 4554666 36666666
Q ss_pred CCCCCCCCC
Q 047113 133 HLDPKNDAY 141 (145)
Q Consensus 133 ~~~~~~~~~ 141 (145)
++.|+++..
T Consensus 268 ~l~P~~~~a 276 (382)
T 2h6f_A 268 KLVPHNESA 276 (382)
T ss_dssp HHSTTCHHH
T ss_pred HHCCCCHHH
Confidence 666665543
No 65
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=8.7e-07 Score=53.15 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=87.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
....|..+...+...|++++|...|+.... .. +.+...+..+...+...|+++.|...++... .. .|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~------- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-LD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DL--KPD------- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CTT-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH-Hh--Ccc-------
Confidence 356788899999999999999999999866 32 2367788888999999999999999999988 32 232
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+...|..+..++...|++++|...+++..+..|+++..
T Consensus 71 ---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 71 ---------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 45667778888999999999999999998888876543
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=6.2e-07 Score=60.85 Aligned_cols=134 Identities=11% Similarity=-0.060 Sum_probs=101.8
Q ss_pred chHHHHhccC---CC-CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 2 DDAERIFGGI---ID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m---~~-~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
++|.+.|+.. .+ ++...|..+-.++.+.|++++|...|+.... ..| +...|..+-..+...|+++.|...++
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLT 100 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4677777744 23 6777777799999999999999999999765 345 56688889999999999999999999
Q ss_pred HhhhhcCcCc-cH-------HHHHHHHHHHhcC----------------CCc---hhhHHHHHHHHHhccCh--------
Q 047113 77 IMVHDFQLDL-NL-------EHYGITVDLLATG----------------ETE---PYVWGALLGACRIHHNV-------- 121 (145)
Q Consensus 77 ~m~~~~~~~~-~~-------~~~~~li~~~~~~----------------~p~---~~~~~~li~~~~~~g~~-------- 121 (145)
.... ..| +. ..|..+...+.+. .|+ ...|..+-..|...|+.
T Consensus 101 ~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 177 (228)
T 4i17_A 101 EGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPL 177 (228)
T ss_dssp HHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9882 233 33 3455555555444 554 46788888888888888
Q ss_pred -------------------hHHHHHHccCCCCCCCCCCC
Q 047113 122 -------------------KIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 122 -------------------~~a~~~~~~~~~~~~~~~~~ 141 (145)
++|+..+++..++.|+++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 178 ASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 89999999999888877543
No 67
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.51 E-value=2.4e-07 Score=68.78 Aligned_cols=122 Identities=8% Similarity=-0.033 Sum_probs=104.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccch-HHHHHHHHHHhhhhcCcCc-cHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGL-IEEGIKVFDIMVHDFQLDL-NLEHY 91 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~-~~~~~ 91 (145)
+...|+.+-.++.+.|++++|+..|++... +.| +...|+.+-.++...|+ +++|...|++.. . +.| +...|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~--l~P~~~~a~ 169 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-E--EQPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-H--HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-H--HCCCCHHHH
Confidence 346799999999999999999999999876 346 57789999999999996 999999999998 3 445 57788
Q ss_pred HHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 92 GITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 92 ~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+.+..+|.+. +.+...|..+-.++.+.|++++|+..++++.+++|+++..|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~ 237 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Confidence 8877777655 45678999999999999999999999999999999876554
No 68
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=6e-07 Score=55.21 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=86.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
+...|..+...+.+.|++++|...|++... . .| +...+..+...+...|++++|...+++.. .. .|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~--~~------- 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK-R--NPKDAKLYSNRAACYTKLLEFQLALKDCEECI-QL--EP------- 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-T--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HH--CT-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--CC-------
Confidence 567899999999999999999999999865 2 34 67888999999999999999999999988 32 23
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
.+...|..+...+...|++++|...+++..+..|.++.
T Consensus 82 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 82 ---------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred ---------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 24556777788889999999999999998887775543
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.49 E-value=7.3e-07 Score=70.57 Aligned_cols=135 Identities=8% Similarity=-0.158 Sum_probs=108.1
Q ss_pred chHHHHhccCC-----------CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHH
Q 047113 2 DDAERIFGGII-----------DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIE 69 (145)
Q Consensus 2 ~~A~~~f~~m~-----------~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~ 69 (145)
++|.+.|++.. +.+...|..+-.++.+.|++++|...|++..+ . .| +...|..+-.++.+.|+++
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-R--VGWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--HCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-c--CcchHHHHHHHHHHHHHcCCHH
Confidence 45666666543 34667899999999999999999999999876 3 34 6778898999999999999
Q ss_pred HHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 70 EGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 70 ~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+|...|++.. + +.| +...|..+..+|.+. +.+...|..+-.++.+.|++++|...+++..
T Consensus 485 ~A~~~~~~al-~--l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 485 SATKHFTEVL-D--TFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHH-H--HSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHH-H--hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 9999999988 3 345 466677776665533 4456789999999999999999999999999
Q ss_pred CCCCCCCCCc
Q 047113 133 HLDPKNDAYY 142 (145)
Q Consensus 133 ~~~~~~~~~~ 142 (145)
+..|+++..+
T Consensus 562 ~l~P~~~~a~ 571 (681)
T 2pzi_A 562 PTSRHFTTAR 571 (681)
T ss_dssp TTSTTHHHHH
T ss_pred ccCcccHHHH
Confidence 9998765443
No 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.2e-06 Score=57.23 Aligned_cols=118 Identities=10% Similarity=0.033 Sum_probs=91.7
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-hhccchH--HHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA-CSYSGLI--EEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~--~~a~~~~ 75 (145)
++|.+.|+.. .+.+...|..+-..+...|++++|...|+.... .. +.+...+..+..+ +...|++ +.|...+
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LR-GENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4556666643 234678899999999999999999999999866 32 2356677777777 7788998 9999999
Q ss_pred HHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 76 DIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 76 ~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+... .. .|+ +...|..+...|...|++++|...+++..+..|+++.
T Consensus 105 ~~al-~~--~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 105 DKAL-AL--DSN----------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHH-HH--CTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHH-Hh--CCC----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 9888 32 332 4556777788899999999999999999988887654
No 71
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.5e-07 Score=55.87 Aligned_cols=105 Identities=12% Similarity=-0.061 Sum_probs=86.9
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLE 89 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 89 (145)
.+...|..+...+.+.|++++|...|++... ..|+ ...+..+-.++...|+++.|...++... .. .|+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~-- 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EK--DGG-- 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--TSC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hh--Ccc--
Confidence 3567899999999999999999999999865 4566 6788888899999999999999999988 32 332
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 90 HYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 90 ~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+...|..+..++...|++++|...+++..+..|+++.
T Consensus 98 --------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 98 --------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4556677788889999999999999998888876543
No 72
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.44 E-value=7.6e-06 Score=62.46 Aligned_cols=131 Identities=8% Similarity=0.049 Sum_probs=99.8
Q ss_pred hHHHHhccCC----CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-H-HHHHHHHHHhhccchHHHHHHHHH
Q 047113 3 DAERIFGGII----DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-N-VTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 3 ~A~~~f~~m~----~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+|.++|++.- +.+...|..+...+.+.|++++|..+|+.... +.|+ . ..|........+.|+++.|..+|+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6888888543 23577899999999999999999999999876 4564 2 588999988999999999999999
Q ss_pred HhhhhcCcCc-cHHHHH--HHHHHHhcC----------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 77 IMVHDFQLDL-NLEHYG--ITVDLLATG----------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 77 ~m~~~~~~~~-~~~~~~--~li~~~~~~----------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+.. .. .| +...|. +++...... +.+...|..++..+.+.|+.++|+.+|++.....|.
T Consensus 381 ~Al-~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAR-ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHH-TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHH-hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 998 32 22 233332 233211111 446789999999999999999999999998776654
Q ss_pred CC
Q 047113 138 ND 139 (145)
Q Consensus 138 ~~ 139 (145)
+|
T Consensus 458 ~~ 459 (530)
T 2ooe_A 458 PP 459 (530)
T ss_dssp CG
T ss_pred CH
Confidence 44
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.44 E-value=2.5e-06 Score=58.67 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=99.5
Q ss_pred chHHHHhccCCCC----chhhHHHHHHHHHHcCChHHHHHHHHHhHhhc-----CCCC-cHHHHHHHHHHhhccchHHHH
Q 047113 2 DDAERIFGGIIDK----NVVIWSGMIASHAIHGQEREALEAFYLVIHCS-----DGKP-NNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 2 ~~A~~~f~~m~~~----~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~-----~~~p-~~~~~~~ll~~~~~~~~~~~a 71 (145)
++|.++++....+ ...+|..+...+...|++++|...|++..... +-.| ...++..+-..+...|+++.|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 3455555554322 35689999999999999999999999976511 3334 466889999999999999999
Q ss_pred HHHHHHhhhhc-----CcCc-cHHHHHHHHHHHhcC------------------------CC-chhhHHHHHHHHHhccC
Q 047113 72 IKVFDIMVHDF-----QLDL-NLEHYGITVDLLATG------------------------ET-EPYVWGALLGACRIHHN 120 (145)
Q Consensus 72 ~~~~~~m~~~~-----~~~~-~~~~~~~li~~~~~~------------------------~p-~~~~~~~li~~~~~~g~ 120 (145)
...+++..... .-.| ....+..+...|... .| ...++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999887321 1123 467777888887766 11 23578889999999999
Q ss_pred hhHHHHHHccCCC
Q 047113 121 VKIGELVAKDPFH 133 (145)
Q Consensus 121 ~~~a~~~~~~~~~ 133 (145)
+++|...+++..+
T Consensus 185 ~~~A~~~~~~~l~ 197 (283)
T 3edt_B 185 YQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 74
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=1.6e-06 Score=53.85 Aligned_cols=104 Identities=9% Similarity=-0.083 Sum_probs=86.3
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
+.+...|..+-..+.+.|++++|...|..... .. +.+...|..+-.++...|+++.|...++... . +.|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~--~~p~----- 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL-E--LDGQ----- 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCch-----
Confidence 34678899999999999999999999999766 33 2357789999999999999999999999988 3 2332
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+...|..+-..|...|++++|...+++..+..|+
T Consensus 76 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 -----------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5567777888899999999999999988876664
No 75
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=2e-06 Score=53.29 Aligned_cols=102 Identities=17% Similarity=0.002 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
...+-.+-..+.+.|++++|...|+.... . .| +...|..+-.++.+.|+++.|...|++.. . +.|+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~--l~P~------- 83 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQ-K--EPEREEAWRSLGLTQAENEKDGLAIIALNHAR-M--LDPK------- 83 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHH-H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT-------
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCC-------
Confidence 34577788889999999999999999876 3 45 67788889999999999999999999988 2 3443
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+...|..+-.++...|++++|...+++..+..|+.+
T Consensus 84 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 84 ---------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 556777788899999999999999999988888654
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.42 E-value=5.1e-07 Score=68.50 Aligned_cols=134 Identities=9% Similarity=-0.087 Sum_probs=108.3
Q ss_pred hHHHHhccCCC---CchhhHHHHHHHHHHcCCh-HHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 3 DAERIFGGIID---KNVVIWSGMIASHAIHGQE-REALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 3 ~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~-~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+|.+.+++... .+...|..+-.++.+.|++ ++|...|++..+ . .| +...|..+-.++.+.|++++|...|+.
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-L--EPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555554432 3677899999999999999 999999999876 3 35 578999999999999999999999999
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcC--------------------------CCchhhHHHHHHHHHhc--------cChhH
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATG--------------------------ETEPYVWGALLGACRIH--------HNVKI 123 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~--------------------------~p~~~~~~~li~~~~~~--------g~~~~ 123 (145)
.. . +.|+...+..+..+|.+. +.+...|..+-.+|... |++++
T Consensus 163 al-~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL-T--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH-T--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH-h--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 3 457777788777777652 44678899999999998 99999
Q ss_pred HHHHHccCCCCCC---CCCCCc
Q 047113 124 GELVAKDPFHLDP---KNDAYY 142 (145)
Q Consensus 124 a~~~~~~~~~~~~---~~~~~~ 142 (145)
|...+++..+..| +++..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHH
Confidence 9999999888887 555443
No 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=1.4e-06 Score=53.08 Aligned_cols=105 Identities=15% Similarity=0.050 Sum_probs=85.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+...|..+...+...|++++|...|+.... .. +.+...+..+...+...|+++.|...++... .. .|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~------- 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIE-LN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CI--DPA------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTT-------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hc--Ccc-------
Confidence 566889999999999999999999999876 32 3367788899999999999999999999988 32 332
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+...|..+...+...|++++|...+++..+..|+++.
T Consensus 79 ---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 79 ---------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred ---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 4556677778888999999999999988887776543
No 78
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.5e-07 Score=55.59 Aligned_cols=99 Identities=10% Similarity=-0.124 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|..+-..+.+.|++++|...|.+... .. +.+...|..+-.++.+.|+++.|...++... . +.|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~--~~p~-------- 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI-E--KDPN-------- 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC--------
Confidence 45688888999999999999999999866 32 2367889999999999999999999999988 3 2332
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
+...|..+-.++...|++++|...+++..+..
T Consensus 71 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 --------FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 55677778888999999999999999988776
No 79
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.37 E-value=2.6e-06 Score=63.48 Aligned_cols=136 Identities=12% Similarity=-0.012 Sum_probs=78.3
Q ss_pred hHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH--HHHHHH-HHhhccchHHHHHHHHH
Q 047113 3 DAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV--TFLSIL-FACSYSGLIEEGIKVFD 76 (145)
Q Consensus 3 ~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll-~~~~~~~~~~~a~~~~~ 76 (145)
+|...|+.. .+.+..+|..+-..+.+.|++++|...|++... ....|... .+..+. -...+.|+++.|...|.
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555543 234667899999999999999999999999876 44443321 122222 12357889999999999
Q ss_pred HhhhhcCcCccHHHHHHHH----HHHhcC----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 77 IMVHDFQLDLNLEHYGITV----DLLATG----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li----~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+.. . +.|+...+...+ ..+.+. +.+..+|+.+-.+|...|++++|.+.|++..+..|..|..+
T Consensus 397 kal-~--i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 397 EGV-K--INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHH-H--SCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHH-h--cCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 887 2 445433333222 222222 66778999999999999999999999999999877666554
No 80
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=2e-07 Score=67.69 Aligned_cols=111 Identities=9% Similarity=-0.040 Sum_probs=79.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----------------HHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----------------NVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
+...|..+-..+.+.|++++|...|++... . .|+ ...|..+-.++.+.|++++|...+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS-W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456899999999999999999999999766 3 343 478999999999999999999999999
Q ss_pred hhhcCcCc-cHHHHHHHHHHHhcC-----------------CCchhhHHHHHHHHHhccChhHH-HHHHccC
Q 047113 79 VHDFQLDL-NLEHYGITVDLLATG-----------------ETEPYVWGALLGACRIHHNVKIG-ELVAKDP 131 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~~~~-----------------~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 131 (145)
. . +.| +...|..+..+|.+. +.+...+..+-..+.+.|+.++| ...++.|
T Consensus 223 l-~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 223 L-E--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp H-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-H--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 3 344 455555555555444 22344555555555556666555 3344433
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.31 E-value=1.8e-05 Score=56.38 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=100.2
Q ss_pred chHHHHhccCCC--C-chh-hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh-hccchHHHHHHHHH
Q 047113 2 DDAERIFGGIID--K-NVV-IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFAC-SYSGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~~-~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~ 76 (145)
++|.++|++.-. | +.. .|..+...+.+.|++++|..+|++..+ .. +++...|....... ...|+++.|..+|+
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578888886532 3 444 899999999999999999999999876 33 23444454333332 23699999999999
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcC-------------------CC--chhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATG-------------------ET--EPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~-------------------~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
..... ..-+...|..++..+.+. .| ....|..++....+.|+.+.|..+++++.+..
T Consensus 194 ~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 194 LGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 98832 123578888888887765 22 24588999999999999999999999998888
Q ss_pred CCCC
Q 047113 136 PKND 139 (145)
Q Consensus 136 ~~~~ 139 (145)
|+++
T Consensus 272 p~~~ 275 (308)
T 2ond_A 272 REEY 275 (308)
T ss_dssp TTTT
T ss_pred cccc
Confidence 8654
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.31 E-value=1.1e-06 Score=59.22 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHH----------------HHHHhhccchHHHHHHHHHHhhhh
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLS----------------ILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
+-.....+.+.|++++|...|++... ..|+ ...|.. +-.++.+.|++++|...|+... .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~ 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-Q 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
Confidence 33445667799999999999999865 3464 456666 8888999999999999999988 3
Q ss_pred cCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 82 FQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+.|+ +...|..+-..+...|++++|...|++..+++|+++
T Consensus 83 --~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 83 --KAPN----------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp --HCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred --HCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3443 334444445555555555555555555555555444
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.28 E-value=7.5e-06 Score=57.99 Aligned_cols=125 Identities=9% Similarity=-0.047 Sum_probs=93.3
Q ss_pred hccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc
Q 047113 8 FGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 8 f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
++...+.+...+-.+-..+.+.|++++|...|++... ..| +...+..+...+.+.|++++|...++... . ..|
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~--~~p 182 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-L--QDQ 182 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-G--GGC
T ss_pred HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-h--hhc
Confidence 3333344556677888889999999999999999865 345 57788889999999999999999999987 2 244
Q ss_pred cHHHHHHHHHH-Hhc-------------C----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 87 NLEHYGITVDL-LAT-------------G----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 87 ~~~~~~~li~~-~~~-------------~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+.......... +.+ . +.+...+..+-..+...|++++|...+.++.+..|+.
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 43322222111 111 1 4466789999999999999999999999999888865
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.27 E-value=7.5e-06 Score=57.98 Aligned_cols=125 Identities=8% Similarity=-0.080 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC-cHHHHHHHHHHhhcc-chHHHHHHHHHHhhhhc---CcCcc
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP-NNVTFLSILFACSYS-GLIEEGIKVFDIMVHDF---QLDLN 87 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~---~~~~~ 87 (145)
..+|+.+-.+|.+.|++++|+..|+..... .|-.+ -..+++.+-..+... |++++|...|++..... +-.+.
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 468999999999999999999999886441 11111 145788888899996 99999999999887311 11111
Q ss_pred -HHHHHHHHHHHhcC----------------CCch--------hhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 88 -LEHYGITVDLLATG----------------ETEP--------YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 88 -~~~~~~li~~~~~~----------------~p~~--------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
..++..+...|.+. .|+. ..|..+..++...|++++|...+++..++.|+.+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 35677777777766 2321 15677788899999999999999999998886543
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.26 E-value=1.2e-06 Score=61.29 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=85.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhc------CCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc-----
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCS------DGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF----- 82 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----- 82 (145)
....|..+...+.+.|++++|...|++... . +-.| ...++..+...+...|++++|...+++.....
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALE-IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 345799999999999999999999999866 3 2244 35578899999999999999999999988311
Q ss_pred -CcCccHHHHHHHHHHHhcC-----------------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 83 -QLDLNLEHYGITVDLLATG-----------------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 83 -~~~~~~~~~~~li~~~~~~-----------------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
...+...........+... .| +..+|..+...|.+.|++++|...+++..++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1122111111111111111 23 446889999999999999999999998766544
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.26 E-value=7e-06 Score=59.25 Aligned_cols=127 Identities=11% Similarity=-0.022 Sum_probs=93.5
Q ss_pred HHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 4 AERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGK-PNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 4 A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
|.+.|++.- +++..++..+-.++...|++++|++++.+-.. .+-. -+...+..++..+.+.|+.+.|...++.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566443 24555667888999999999999999998644 3321 267788999999999999999999999998
Q ss_pred hhcCcCc-----cHHHHHHHHHHHhcC--------------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 80 HDFQLDL-----NLEHYGITVDLLATG--------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 80 ~~~~~~~-----~~~~~~~li~~~~~~--------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
+ ..| +-.+...|..++... .|++.+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 -~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 -N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 355 244444444443321 666556667777899999999999999876664
No 87
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=4.1e-06 Score=52.21 Aligned_cols=105 Identities=8% Similarity=-0.011 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc-HHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN-LEHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 93 (145)
...|..|-..+.+.|++++|+..|++..+ . .| +...|+.+-.++.+.|+++.|...++... . +.|+ ...|..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~-~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al-~--~~~~~~~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE-L--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV-E--VGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-H--hCcccchhhHH
Confidence 34688999999999999999999999876 3 45 67789999999999999999999999887 2 2222 111211
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
+ ..+|..+-.++...|++++|.+.|++..+..|
T Consensus 82 ~----------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 82 I----------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp H----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred H----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1 13456677888999999999999998766555
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=1.5e-06 Score=57.90 Aligned_cols=106 Identities=10% Similarity=-0.073 Sum_probs=74.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--------------HHHHHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--------------NVTFLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
....|..+-..+.+.|++++|...|++......-.|+ ...|..+-.++.+.|+++.|...++...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al- 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL- 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 3456888889999999999999999997651111221 2678888889999999999999999988
Q ss_pred hcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 81 DFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.. .|+ +...|..+-.+|...|++++|...+++..+..|+++
T Consensus 116 ~~--~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 116 KI--DKN----------------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HH--STT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred Hh--Ccc----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 32 332 334455555666666666666666666655555443
No 89
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=1.3e-05 Score=50.95 Aligned_cols=114 Identities=4% Similarity=-0.117 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|..+-..+.+.|++++|...|..... .. +.+...+..+...+...|+++.|...++... ... ..+...|..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHHHHH
Confidence 34677788888888888888888888765 32 2256777788888888888888888888877 321 22455666666
Q ss_pred HHHhcC-----------------CCchhhHHHHH--HHHHhccChhHHHHHHccCCC
Q 047113 96 DLLATG-----------------ETEPYVWGALL--GACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 96 ~~~~~~-----------------~p~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+|.+. +.+...+..+- ..+.+.|++++|...++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555554 22444453333 336677888888888776554
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.19 E-value=4.3e-05 Score=46.33 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=77.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.++|+.+. +.+...|..+...+.+.|++++|...|+++.. .+ +.+...+..+...+.+.|+++.|...++.+
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56778887653 34677899999999999999999999999876 43 346778889999999999999999999999
Q ss_pred hhhcCcCccHHHHHHHHHHHhcC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
. ... ..+...+..+..+|.+.
T Consensus 96 ~-~~~-~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 96 L-ELD-PRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp H-HHC-TTCHHHHHHHHHHHHTT
T ss_pred H-HhC-CCChHHHHHHHHHHHHH
Confidence 8 322 33577788888888766
No 91
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=7.4e-05 Score=51.80 Aligned_cols=60 Identities=3% Similarity=-0.181 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHHHHHHHhh
Q 047113 16 VVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGIKVFDIMV 79 (145)
Q Consensus 16 ~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~ 79 (145)
...+..+-..+.+ .+++++|...|++..+ .+ +...+..+-..+.. .+++++|...|++..
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 3444444455555 5555555555555444 22 34444444444444 555555555555444
No 92
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.18 E-value=1.3e-05 Score=56.63 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=85.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
+...|..+-..+.+.|++++|...|+.... . .| +...|..+-.++.+.|++++|...++... . +.|+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~--~~p~------ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-R--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL-E--LDGQ------ 70 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--SCTT------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC------
Confidence 456788889999999999999999999866 3 45 67888999999999999999999999988 3 3443
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+...+..+-.+|...|++++|...+++..+..|+++
T Consensus 71 ----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 71 ----------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 556777788888999999999999998887776554
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.17 E-value=8.6e-06 Score=55.97 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 106 YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 106 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.++..+...|...|++++|...+++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788889999999999999999987554
No 94
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=1.6e-05 Score=48.36 Aligned_cols=103 Identities=6% Similarity=-0.075 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
..+|..+...+.+.|++++|...|.+... .. +.+...+..+...+...|+++.|...++... ... |+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~--~~~------- 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVG--REN------- 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHH--HHS-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhc--ccc-------
Confidence 45788899999999999999999999876 33 3467788899999999999999999999988 321 110
Q ss_pred HHHhcCCCc----hhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 96 DLLATGETE----PYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 96 ~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.++ ..+|..+...+...|++++|...+++..+..|
T Consensus 72 ------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 72 ------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 011 45667778889999999999999998877666
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.16 E-value=1.1e-05 Score=53.84 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...+..+-..+.+.|++++|...|++. +.|+...+..+-..+.+.|+++.|...++... .. .|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~~--------- 68 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NR--DK--------- 68 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CT---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--Cc---------
Confidence 345667788889999999999999865 35688899999999999999999999999988 32 23
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.+...|..+-..|...|++++|...+++..+..|.++
T Consensus 69 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 69 -------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp -------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred -------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 2556778888999999999999999999888777554
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.16 E-value=1.7e-05 Score=51.82 Aligned_cols=113 Identities=7% Similarity=-0.067 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
+-.+...+.+.|++++|...|++..+ ..| +...+..+-..+.+.|++++|...++..... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 44455556666666666666666433 123 4455666666666666666666666665522 1222211111100
Q ss_pred --------------HhcC---CC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 98 --------------LATG---ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 98 --------------~~~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
+-+. .| +...+..+-..+...|++++|...++++.+..|+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 0000 33 4566777777777777777777777777776664
No 97
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.4e-06 Score=64.53 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----------------HHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----------------NVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
....|..+-..+.+.|++++|...|++... . .|+ ...|..+-.++.+.|+++.|...+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS-W--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455788999999999999999999999765 2 232 578889999999999999999999999
Q ss_pred hhhcCcCc-cHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 79 VHDFQLDL-NLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
. . +.| +...|.. +-.+|...|++++|...|++..++.|+++
T Consensus 344 l-~--~~p~~~~a~~~-----------------~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 344 L-G--LDSANEKGLYR-----------------RGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H-H--HSTTCHHHHHH-----------------HHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H-h--cCCccHHHHHH-----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 8 3 334 3444444 44444444555555555554444444433
No 98
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=6.8e-05 Score=51.97 Aligned_cols=126 Identities=10% Similarity=-0.060 Sum_probs=79.0
Q ss_pred chHHHHhccCCC-CchhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHH
Q 047113 2 DDAERIFGGIID-KNVVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m~~-~~~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 72 (145)
++|.+.|+...+ .+...|..+-..|.+ .+++++|...|+...+ .+ +...+..+-..+.. .+++++|.
T Consensus 59 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 59 KKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 345555554422 356667777777777 7777777777777666 43 56666666666766 77777777
Q ss_pred HHHHHhhhhcCcCccHHHHHHHHHHHhc----C---------------CCchhhHHHHHHHHHh----ccChhHHHHHHc
Q 047113 73 KVFDIMVHDFQLDLNLEHYGITVDLLAT----G---------------ETEPYVWGALLGACRI----HHNVKIGELVAK 129 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~li~~~~~----~---------------~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 129 (145)
..|++.. +.+ +...+..+...|.+ . ..+...+..+-..|.. .+++++|...++
T Consensus 135 ~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 135 EYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 7777776 433 34455555555554 2 3344556666666666 777777777776
Q ss_pred cCCCCC
Q 047113 130 DPFHLD 135 (145)
Q Consensus 130 ~~~~~~ 135 (145)
+..+..
T Consensus 211 ~a~~~~ 216 (273)
T 1ouv_A 211 KACELE 216 (273)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 655443
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.10 E-value=7.4e-05 Score=51.58 Aligned_cols=135 Identities=9% Similarity=-0.025 Sum_probs=86.0
Q ss_pred chHHHHhccCCC--C-c---hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhc--------cc
Q 047113 2 DDAERIFGGIID--K-N---VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSY--------SG 66 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~---~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~--------~~ 66 (145)
++|.+.|+.+.. | + ...|..+-.++.+.|++++|...|+.......-.|. ...+..+-.++.. .|
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 567777776632 3 3 456778888888888888888888887651211222 3455566666666 88
Q ss_pred hHHHHHHHHHHhhhhcCcCcc-HHHH-----------------HHHHHHHhcC----------------CCc----hhhH
Q 047113 67 LIEEGIKVFDIMVHDFQLDLN-LEHY-----------------GITVDLLATG----------------ETE----PYVW 108 (145)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~~~~-~~~~-----------------~~li~~~~~~----------------~p~----~~~~ 108 (145)
+++.|...|+..... .|+ ...+ ..+...|.+. .|+ ...+
T Consensus 112 ~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~ 188 (261)
T 3qky_A 112 DTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDAL 188 (261)
T ss_dssp HHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred hHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 888888888888732 222 2222 2233344433 343 2356
Q ss_pred HHHHHHHHhc----------cChhHHHHHHccCCCCCCCCC
Q 047113 109 GALLGACRIH----------HNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 109 ~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..+..+|... |++++|...++++.+..|+++
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 189 VGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 6666777655 777888888888777777654
No 100
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=1.7e-05 Score=48.54 Aligned_cols=102 Identities=10% Similarity=-0.091 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-H---HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-N---VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+-.+-..+.+.|++++|...|+.... .. |+ . ..+..+-.++.+.|+++.|...++... .. .|+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~-~~--~p~~~----- 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE-LY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV-SR--YPTHD----- 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTST-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-HC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HH--CCCCc-----
Confidence 44566778899999999999999866 32 33 3 477778888999999999999999988 32 23200
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.....+..+-..+...|++++|...++++.+..|+++
T Consensus 74 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 74 --------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp --------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 0034556677888899999999999999888777654
No 101
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=8.3e-06 Score=52.49 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhc--------C--------CCC-cHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCS--------D--------GKP-NNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~--------~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
...|...-..+.+.|++++|+..|..... . . +.| +...|..+-.++.+.|+++.|...++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT-RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45788889999999999999999999765 3 0 022 3467888899999999999999999998
Q ss_pred hhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
. . +.|+ +...|..+-.+|...|++++|...+++..++.|+++
T Consensus 90 l-~--~~p~----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 L-K--REET----------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp H-H--HSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred H-h--cCCc----------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 8 3 3443 556777788889999999999999999888888654
No 102
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.09 E-value=2.8e-05 Score=54.27 Aligned_cols=118 Identities=7% Similarity=-0.016 Sum_probs=88.7
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhc-------CCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhc-----
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCS-------DGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDF----- 82 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----- 82 (145)
+..+|..+...+...|++++|..+|+++.+ . .-......+..+...+...|+++.|...++......
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 356788899999999999999999988765 2 222346678888888899999999999988887321
Q ss_pred CcCc-cHHHHHHHHHHHhcC------------------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 83 QLDL-NLEHYGITVDLLATG------------------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 83 ~~~~-~~~~~~~li~~~~~~------------------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+-.| ....+..+...|... .| ...++..+...|...|++++|...+++..+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223 466677777777666 12 234688888999999999999999998766
No 103
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=2.5e-05 Score=59.42 Aligned_cols=106 Identities=7% Similarity=-0.030 Sum_probs=76.1
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|++. .+.+...|..+-.++.+.|++++|...|++..+ . .| +...|..+-.++.+.|++++|...+++
T Consensus 23 ~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-L--DKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677777744 234677899999999999999999999998876 3 44 577888888899999999999999998
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHH--HHhccChhHHHHHHc
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGA--CRIHHNVKIGELVAK 129 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 129 (145)
.. + +.|+ +...+..+-.+ +.+.|++++|.+.++
T Consensus 100 al-~--~~p~----------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 100 VV-K--VKPH----------------DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HH-H--HSTT----------------CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HH-H--hCCC----------------CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 87 3 2332 33344444444 788899999999999
No 104
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=8.7e-06 Score=53.24 Aligned_cols=109 Identities=9% Similarity=-0.065 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-------------HHHHHHHHHHhhccchHHHHHHHHHHhhhhcC
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-------------NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ 83 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (145)
..|...-..+.+.|++++|+..|+...+ +.|+ ...|+.+-.++.+.|++++|...+++.. .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~-- 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-H-- 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--
Confidence 4577788889999999999999999765 2343 2388999999999999999999999988 3
Q ss_pred cCccHHHHHHHHHHHhcCCC-chhhH----HHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 84 LDLNLEHYGITVDLLATGET-EPYVW----GALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+ .+--.+..| +...| ...-.++...|++++|+..|++..++.|.+...
T Consensus 86 l----------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 86 Y----------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp H----------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred h----------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 2 000011122 44567 778899999999999999999999888866554
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.05 E-value=0.00021 Score=49.21 Aligned_cols=124 Identities=9% Similarity=-0.075 Sum_probs=93.4
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-c---HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-c
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-N---NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-N 87 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~ 87 (145)
+.+...+-.+-..+.+.|++++|...|+.... . .| + ...+..+-.++.+.|+++.|...|+.......-.| .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFT-Y--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGG-G--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-h--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 34666777888899999999999999999876 3 24 3 56788888899999999999999999984322122 2
Q ss_pred HHHHHHHHHHHhc--------C----------------CCc-hhhH-----------------HHHHHHHHhccChhHHH
Q 047113 88 LEHYGITVDLLAT--------G----------------ETE-PYVW-----------------GALLGACRIHHNVKIGE 125 (145)
Q Consensus 88 ~~~~~~li~~~~~--------~----------------~p~-~~~~-----------------~~li~~~~~~g~~~~a~ 125 (145)
...+..+..+|.+ . .|+ ...+ -.+-..|.+.|++++|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666655 3 443 3344 44567889999999999
Q ss_pred HHHccCCCCCCCCC
Q 047113 126 LVAKDPFHLDPKND 139 (145)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (145)
..++++.+..|+++
T Consensus 169 ~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 169 VTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHCTTST
T ss_pred HHHHHHHHHCCCCc
Confidence 99999988877644
No 106
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.7e-05 Score=57.54 Aligned_cols=105 Identities=12% Similarity=-0.026 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH------------------HHHHHHHHhhccchHHHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV------------------TFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
...|..+-..+.+.|++++|...|++... +.|+.. .|+.+-.++.+.|+++.|...++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45688888899999999999999999655 245443 788888899999999999999998
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
.. . +.|+ +...|..+-.+|...|++++|...|++..++.|+++..+
T Consensus 256 al-~--~~p~----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 256 VL-T--EEEK----------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HH-H--HCTT----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HH-H--hCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88 3 2332 445556666677777777777777777777766655443
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.04 E-value=6.8e-07 Score=57.42 Aligned_cols=97 Identities=6% Similarity=-0.016 Sum_probs=77.3
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGE 102 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 102 (145)
..+...|++++|+..+..... ..| +...+-.+-..|.+.|+++.|...|++.. . +.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~--~~p~--------------- 63 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-N--VQER--------------- 63 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT---------------
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCC---------------
Confidence 445567889999999988643 345 34466678888999999999999999998 3 3443
Q ss_pred CchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 103 TEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 103 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+..+|..+-..|...|++++|...|++..+++|+++..+
T Consensus 64 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 102 (150)
T 4ga2_A 64 -DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLV 102 (150)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHH
Confidence 667888888999999999999999999999999877654
No 108
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.03 E-value=0.00013 Score=43.58 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=70.4
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+++. +.+..+|..+...+.+.|++++|...|+.+.. .. +.+..++..+...+.+.|+++.|...++.+
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46777777653 34677899999999999999999999999876 43 346778899999999999999999999998
Q ss_pred hhhcCcCccHHHHHHHHHH
Q 047113 79 VHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~ 97 (145)
. +.. +.+...+..+..+
T Consensus 104 ~-~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 104 L-ELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp H-HHC-TTCHHHHHHHHHH
T ss_pred H-HhC-CCcHHHHHHHHHH
Confidence 8 322 1234444444433
No 109
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.9e-06 Score=52.73 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred chHHHHhccCCC-----C-chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-----K-NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-----~-~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|...|+.... | +...|..+-..+.+.|++++|...|++..+ . .| +...+..+-.++.+.|++++|...
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-Q--FPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 456666664422 2 345677777777777777777777777655 2 23 456667777777777777777777
Q ss_pred HHHhh
Q 047113 75 FDIMV 79 (145)
Q Consensus 75 ~~~m~ 79 (145)
+++..
T Consensus 84 ~~~al 88 (117)
T 3k9i_A 84 LLKII 88 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=3.6e-05 Score=50.64 Aligned_cols=132 Identities=10% Similarity=-0.081 Sum_probs=90.3
Q ss_pred chHHH---HhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHh---hcCCCC-cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAER---IFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIH---CSDGKP-NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~---~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~---~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+ .+..-+.....+|+.+-..+...|++++|...|++... +.+..| ....++.+-..+...|+++.|...
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46777 55443334567899999999999999999999988543 122333 345778888889999999999999
Q ss_pred HHHhhhh---cCcCc--cHHHHHHHHHHHhcC-------------------CCc----hhhHHHHHHHHHhccChhHHHH
Q 047113 75 FDIMVHD---FQLDL--NLEHYGITVDLLATG-------------------ETE----PYVWGALLGACRIHHNVKIGEL 126 (145)
Q Consensus 75 ~~~m~~~---~~~~~--~~~~~~~li~~~~~~-------------------~p~----~~~~~~li~~~~~~g~~~~a~~ 126 (145)
+++.... .+-.| ....+..+...|... ..+ ..++..+-..+...|++++|..
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9887732 22122 233455555555544 122 2345777888899999999998
Q ss_pred HHccCCC
Q 047113 127 VAKDPFH 133 (145)
Q Consensus 127 ~~~~~~~ 133 (145)
.+++..+
T Consensus 169 ~~~~al~ 175 (203)
T 3gw4_A 169 HWLRARD 175 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.00 E-value=9.4e-05 Score=45.90 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=71.9
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|++. .+.+...|..+-.++.+.|++++|+..|+...+ .+ +.+...|..+-.++...|++++|...|+..
T Consensus 30 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 30 PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR-LD-SKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788888854 345788999999999999999999999999876 33 236788999999999999999999999999
Q ss_pred hhhcCcCcc-HHHHHHHHH
Q 047113 79 VHDFQLDLN-LEHYGITVD 96 (145)
Q Consensus 79 ~~~~~~~~~-~~~~~~li~ 96 (145)
. + +.|+ ...+..|-.
T Consensus 108 l-~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 108 L-Q--VDPSNEEAREGVRN 123 (126)
T ss_dssp H-H--HCTTCHHHHHHHHH
T ss_pred H-H--HCcCCHHHHHHHHH
Confidence 8 3 4563 555544443
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.99 E-value=0.00016 Score=45.84 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=63.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|+.... .. +.+...+..+-.++...|+++.|...++..
T Consensus 30 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45677777542 34678899999999999999999999999876 32 336778889999999999999999999998
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 108 ~ 108 (166)
T 1a17_A 108 V 108 (166)
T ss_dssp H
T ss_pred H
Confidence 8
No 113
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=4.6e-05 Score=46.36 Aligned_cols=70 Identities=14% Similarity=-0.040 Sum_probs=51.4
Q ss_pred HcCChHHHHHHHHHhHhhcCC-CC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC
Q 047113 28 IHGQEREALEAFYLVIHCSDG-KP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG 101 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~~~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~ 101 (145)
..|++++|+..|++..+ .+. .| +...+..+-.++...|++++|...|++.. .. .| +...+..+..+|.+.
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQ--FPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHHc
Confidence 46899999999999876 321 24 46688899999999999999999999998 32 34 477777788777766
No 114
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.98 E-value=0.0001 Score=52.04 Aligned_cols=121 Identities=8% Similarity=-0.030 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHc-CChHHHHHHHHHhHhh---cCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cH-
Q 047113 16 VVIWSGMIASHAIH-GQEREALEAFYLVIHC---SDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NL- 88 (145)
Q Consensus 16 ~~~~~~li~a~~~~-g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~- 88 (145)
..+|+.+-..|.+. |++++|+..|++.... .+-.+. ..+++.+-..+.+.|++++|...|+... ...... ..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~ 195 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCccc
Confidence 35799999999996 9999999999986540 111111 3578888999999999999999999988 432221 11
Q ss_pred ----HHHHHHHHHHhcC----------------CCch------hhHHHHHHHHH--hccChhHHHHHHccCCCCCCC
Q 047113 89 ----EHYGITVDLLATG----------------ETEP------YVWGALLGACR--IHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 89 ----~~~~~li~~~~~~----------------~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~ 137 (145)
..|..+..+|... .|+. ..+..++.+|. ..+++++|...|+.+.+++|.
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 1455555555543 3332 13455666665 467899999999998887764
No 115
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.93 E-value=0.00027 Score=53.84 Aligned_cols=117 Identities=10% Similarity=0.075 Sum_probs=89.3
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
.|...|..++. +.+.|++++|..+|+++.+ ..+-+...|...+..+.+.|+++.|..+|++.. . ..|+...|..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral-~--~~p~~~lw~~ 84 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL-M--KVLHIDLWKC 84 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--TCCCHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-h--cCCChHHHHH
Confidence 37789999998 4889999999999999865 233467789999999999999999999999998 3 3478777776
Q ss_pred HHHHH------------------hcC-------CCchhhHHHHHHHHHh---------ccChhHHHHHHccCCCCCCC
Q 047113 94 TVDLL------------------ATG-------ETEPYVWGALLGACRI---------HHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 94 li~~~------------------~~~-------~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~ 137 (145)
++... -+. .++...|...+.-..+ .|++++|+.+|++..+ .|.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~ 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh
Confidence 65411 111 2344577777765554 7899999999999877 353
No 116
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=9.8e-05 Score=43.75 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+...|..+-..+.+.|++++|...|++... .. +.+...+..+-.++.+.|++++|...++... . +.|+.......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT-AQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-R--YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCCccHHHHH
Confidence 456788899999999999999999999866 32 2367888999999999999999999999998 2 34431000001
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 95 VDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 95 i~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
...+..+-.++...|++++|...++++.
T Consensus 78 ----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 ----------SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp ----------HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred ----------HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 2233445566666677777666655543
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.87 E-value=0.00014 Score=46.78 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=65.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+... +.+...|..+-.++.+.|++++|+..|+.... +.| +...|..+-.++.+.|++++|...|+.
T Consensus 53 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57888888663 34788999999999999999999999999876 345 577889999999999999999999999
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 130 al 131 (151)
T 3gyz_A 130 VI 131 (151)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 118
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.86 E-value=0.00039 Score=41.84 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=63.3
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+...|++++|...++.... .. +.+...+..+...+...|+++.|...++..
T Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-ID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46777777542 34678899999999999999999999999876 32 235778889999999999999999999998
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 107 ~ 107 (131)
T 2vyi_A 107 L 107 (131)
T ss_dssp H
T ss_pred H
Confidence 8
No 119
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=0.00034 Score=42.06 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=64.5
Q ss_pred CchHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 1 MDDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 1 ~~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
+++|.+.|+... +.+...|..+-..+.+.|++++|...|+.... .. +.+...|..+-.++...|+++.|...|+.
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788888553 34678899999999999999999999999876 33 23577889999999999999999999998
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.84 E-value=0.00039 Score=42.15 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=70.6
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...|++... .. +.+...+..+-.++.+.|+++.|...++..
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57888888653 34678899999999999999999999999876 33 236778899999999999999999999998
Q ss_pred hhhcCcCc-cHHHHHHHHHHH
Q 047113 79 VHDFQLDL-NLEHYGITVDLL 98 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li~~~ 98 (145)
. . ..| +...+..+..++
T Consensus 111 ~-~--~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 111 L-D--LDSSCKEAADGYQRCM 128 (133)
T ss_dssp H-H--HCGGGTHHHHHHHHHH
T ss_pred H-H--hCCCchHHHHHHHHHH
Confidence 8 3 233 334444444433
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.83 E-value=0.00036 Score=45.37 Aligned_cols=124 Identities=9% Similarity=-0.133 Sum_probs=87.7
Q ss_pred chHHHHhccCCC---CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-hhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID---KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFA-CSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~---~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~ 77 (145)
++|...|+.... .+...|..+-.++.+.|++++|...|+.... . .|+...+...... +.+.+....+...++.
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-E--YQDNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-G--GCCHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-c--cCChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 578888887653 4678899999999999999999999999765 2 3444333222111 1222233346777777
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC----------------CCc---hhhHHHHHHHHHhccChhHHHHHHccC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG----------------ETE---PYVWGALLGACRIHHNVKIGELVAKDP 131 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 131 (145)
.. . ..| +...+..+..+|.+. .|+ ...+..+...+...|+.++|...+++.
T Consensus 100 al-~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 100 EL-A--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HH-H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HH-H--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 76 2 355 477788888777766 443 458999999999999999999988764
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.81 E-value=0.00068 Score=45.85 Aligned_cols=136 Identities=12% Similarity=-0.051 Sum_probs=89.5
Q ss_pred chHHHHhccCCC--Cc----hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHhh-----------
Q 047113 2 DDAERIFGGIID--KN----VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-VTFLSILFACS----------- 63 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~----~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~----------- 63 (145)
++|.+.|+.+.. |+ ...+..+..++.+.|++++|...|++..+...-.+.. ..+-.+-.++.
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 578888887642 32 2468888999999999999999999987612222221 12322222222
Q ss_pred -------ccchHHHHHHHHHHhhhhcCcCcc-HHHHH-----------------HHHHHHhcC----------------C
Q 047113 64 -------YSGLIEEGIKVFDIMVHDFQLDLN-LEHYG-----------------ITVDLLATG----------------E 102 (145)
Q Consensus 64 -------~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~-----------------~li~~~~~~----------------~ 102 (145)
..|++++|...|+.+... .|+ ...+. .+...|.+. .
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 368999999999999832 232 22221 112222222 4
Q ss_pred Cch----hhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 103 TEP----YVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 103 p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
|+. ..+..+..+|.+.|+.++|...++.+....|++..
T Consensus 178 p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 178 PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 432 46888899999999999999999988887776544
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.79 E-value=0.00029 Score=49.73 Aligned_cols=123 Identities=7% Similarity=-0.123 Sum_probs=92.2
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHH-HHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL-SILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+... +.+...+..+...+.+.|++++|...|++... ..|+..... .....+.+.+..+.+...+++
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 56788888653 34677899999999999999999999999755 345544332 223335667777778888887
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC----------------CCc---hhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG----------------ETE---PYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.. . ..| +...+..+..+|... .|+ ...+..+...+...|+.++|...+++
T Consensus 211 al-~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 211 QV-A--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH-h--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 77 2 344 577788888887766 443 56899999999999999999988875
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.78 E-value=0.00045 Score=48.63 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=63.4
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+..- +.+...|..+-.++.+.|++++|...|+...+ +.| +...+..+-.++...|++++|...|+.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46777777542 34778899999999999999999999999755 445 577889999999999999999999998
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 98 al 99 (281)
T 2c2l_A 98 AY 99 (281)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 125
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=4.2e-05 Score=56.35 Aligned_cols=105 Identities=9% Similarity=-0.048 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhc-------------CCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCS-------------DGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF 82 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~-------------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (145)
..|..+-..+.+.|++++|+..|++..+.. ...| +...|+.+-.++.+.|++++|...+++.. .
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-E- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-H-
Confidence 358888899999999999999999865300 1233 46688889999999999999999999998 3
Q ss_pred CcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 83 QLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 83 ~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+.|+ +...|..+-.+|...|++++|+..+++..++.|+++.
T Consensus 302 -~~p~----------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 302 -IDPS----------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp -TCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hCch----------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 3442 4455666677777888888888888887777776543
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.76 E-value=0.00027 Score=51.11 Aligned_cols=97 Identities=11% Similarity=-0.056 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGIT 94 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~l 94 (145)
...|..+-.++.+.|++++|+..|+...+ .. +.+...|..+-.++...|+++.|...|++.. . +.| +...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~--l~P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE-LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL-Q--LYPNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--HCCCCHHHHHHH
Confidence 47899999999999999999999999876 33 2368899999999999999999999999998 3 345 56777777
Q ss_pred HHHHhcC----CCchhhHHHHHHHHHh
Q 047113 95 VDLLATG----ETEPYVWGALLGACRI 117 (145)
Q Consensus 95 i~~~~~~----~p~~~~~~~li~~~~~ 117 (145)
..++.+. .-....|..++..+..
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777765 2223456666655544
No 127
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.75 E-value=0.00019 Score=52.23 Aligned_cols=118 Identities=6% Similarity=-0.185 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-----cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-----NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL- 86 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~- 86 (145)
..+|..+-..|...|++++|...+.+......-.+ ...+++.+-..+...|+++.|...++...... +-.+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45799999999999999999999988653111112 24578888899999999999999998877321 1111
Q ss_pred cHHHHHHHHHHHhcC---------------------C-Cc-hhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 87 NLEHYGITVDLLATG---------------------E-TE-PYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 87 ~~~~~~~li~~~~~~---------------------~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...++..+..+|.+. . |. ..++..+-..|.+.|++++|...+++..+
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 134667777777665 1 32 34788888999999999999999987665
No 128
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.75 E-value=0.00033 Score=50.54 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-c
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL-N 87 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~ 87 (145)
..+|..+...+...|++++|...|++......-.++ ...+..+-..+...|+++.|...++...... +-.+ .
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 357889999999999999999999986531111122 3378888889999999999999999876211 1111 1
Q ss_pred HHHHHHHHHHHhcC-------------------CCc----hhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LEHYGITVDLLATG-------------------ETE----PYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~~~~~li~~~~~~-------------------~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..++..+...|.+. .++ ..++..+-..|...|++++|...+++..+
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667777777665 222 45788888999999999999999887655
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.74 E-value=0.00062 Score=43.26 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+.. .+.+...|..+-.++.+.|++++|...|+.... . .| +...+..+-.++...|++++|...|+.
T Consensus 38 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 38 EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-M--DIXEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--STTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c--CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678888865 345788999999999999999999999999876 3 34 677888899999999999999999999
Q ss_pred hhh
Q 047113 78 MVH 80 (145)
Q Consensus 78 m~~ 80 (145)
...
T Consensus 115 al~ 117 (148)
T 2vgx_A 115 AQE 117 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 883
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.73 E-value=4.8e-05 Score=58.55 Aligned_cols=107 Identities=14% Similarity=0.001 Sum_probs=74.3
Q ss_pred cCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC-----
Q 047113 29 HGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG----- 101 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----- 101 (145)
.|++++|...|++..+ ..| +...+..+-..+.+.|++++|...+++.. + ..| +...|..+..+|.+.
T Consensus 2 ~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-A--LHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-T--TSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4789999999998754 345 57789999999999999999999999998 3 344 577888888888766
Q ss_pred ------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 102 ------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 102 ------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+.+...|..+-..|.+.|++++|...+++..+..|+++..
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 127 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4456789999999999999999999999998888876543
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.73 E-value=8.3e-05 Score=52.00 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-c
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL-N 87 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~ 87 (145)
..+|..+...+...|++++|...|++.... .+-.+ ....+..+...+...|+++.|...++...... +-.+ .
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 347888999999999999999999986531 11111 13377888888999999999999998876321 1111 1
Q ss_pred HHHHHHHHHHHhcC-------------------CC----chhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 88 LEHYGITVDLLATG-------------------ET----EPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 88 ~~~~~~li~~~~~~-------------------~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
..++..+...|.+. .. ...++..+...|.+.|++++|...+++..++.+
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 55666677777665 11 134778888999999999999999998766543
No 132
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.69 E-value=0.0004 Score=50.54 Aligned_cols=117 Identities=13% Similarity=-0.011 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHh---hcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCc--Cc-cHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIH---CSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQL--DL-NLE 89 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~---~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~-~~~ 89 (145)
.+|+.+-..|.+.|++++|...|++... ..+-.| ...++..+-..+.+.|+++.|...+++......- .| ...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4799999999999999999999988643 014424 4668899999999999999999999987732111 12 223
Q ss_pred HHHHHHHHHhcC------------------C-CchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVDLLATG------------------E-TEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~~~~~~------------------~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+..+...|.+. . .....+..+-..|...|++++|...+++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555443 1 2234677888999999999999999988665
No 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.69 E-value=0.00074 Score=45.66 Aligned_cols=125 Identities=8% Similarity=-0.094 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccH-HHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNL-EHYGI 93 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~ 93 (145)
...+-.+...+.+.|++++|...|+.+.....-.|. ...+..+..++.+.|+++.|...|+.+.....-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345666778899999999999999998761222222 3577778889999999999999999998332212221 13333
Q ss_pred HHHHHhcC-CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 94 TVDLLATG-ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 94 li~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+..+|.+. ......|..+-..+...|++++|...|+++.+..|+++.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 33334332 111122333444555678999999999999998887764
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.68 E-value=0.001 Score=42.55 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=64.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+-.++.+.|++++|+..|+.... .. +-+...|..+-.++...|+++.|...|++.
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV-VD-PKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56777777553 34778999999999999999999999999876 33 225788999999999999999999999999
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 106 l 106 (164)
T 3sz7_A 106 I 106 (164)
T ss_dssp H
T ss_pred H
Confidence 8
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=0.0013 Score=38.64 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=68.7
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+...+.+.|++++|...+++... .. +.+...+..+..++...|+++.|...++..
T Consensus 21 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46777777552 34678899999999999999999999999876 32 236778889999999999999999999998
Q ss_pred hhhcCcCc-cHHHHHHHH
Q 047113 79 VHDFQLDL-NLEHYGITV 95 (145)
Q Consensus 79 ~~~~~~~~-~~~~~~~li 95 (145)
. . ..| +...+..+.
T Consensus 99 ~-~--~~~~~~~~~~~l~ 113 (118)
T 1elw_A 99 L-K--HEANNPQLKEGLQ 113 (118)
T ss_dssp H-T--TCTTCHHHHHHHH
T ss_pred H-H--cCCCCHHHHHHHH
Confidence 8 3 334 344444443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.00056 Score=48.68 Aligned_cols=118 Identities=9% Similarity=-0.113 Sum_probs=78.9
Q ss_pred chHHHHhccCCC--CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.++|+.+.. |+-...-.+-..+.+.+++++|+..|+.... .. .|. ...+..+-.++.+.|++++|+..|++
T Consensus 119 ~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTE 196 (282)
T ss_dssp HHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 577888887753 4222555555677888888888888875433 11 111 22556666777888888888888887
Q ss_pred hhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 78 MVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.. .....|.. ....+...-.++.+.|+.++|...|+++....|+
T Consensus 197 a~-~g~~~P~~---------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 197 AN-DSPAGEAC---------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HH-TSTTTTTT---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred Hh-cCCCCccc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 76 33332321 1224445667788999999999999999888876
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=6.8e-05 Score=56.98 Aligned_cols=102 Identities=8% Similarity=-0.032 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
|..+-..+.+.|++++|...|++..+ . .| +...|..+-.++.+.|++++|...+++.. + +.|+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--l~p~---------- 72 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIE-L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAI-E--LDKK---------- 72 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--SCTT----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC----------
Confidence 33444556788999999999999876 3 45 57899999999999999999999999998 3 2332
Q ss_pred HhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 98 LATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 98 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
+...|..+-.+|...|++++|...+++..+..|+++..+
T Consensus 73 ------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 111 (477)
T 1wao_1 73 ------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111 (477)
T ss_dssp ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 556777888899999999999999999988888776543
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.67 E-value=0.00071 Score=39.59 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=63.4
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhcc-chHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYS-GLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~ 75 (145)
++|...|+... +.+...|..+...+.+.|++++|...|++..+ .. +. +...+..+...+.+. |++++|.+.+
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 23 TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN-VI-EDEYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-cccchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46777777543 34677899999999999999999999999876 32 22 577889999999999 9999999999
Q ss_pred HHhh
Q 047113 76 DIMV 79 (145)
Q Consensus 76 ~~m~ 79 (145)
+...
T Consensus 101 ~~~~ 104 (112)
T 2kck_A 101 ARAK 104 (112)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 9998
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.66 E-value=0.00081 Score=47.26 Aligned_cols=114 Identities=9% Similarity=-0.085 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCC-Cc----HHHHHHHHHHhhccchHHHHHHHHHHhhhh---c-CcCcc-H
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGK-PN----NVTFLSILFACSYSGLIEEGIKVFDIMVHD---F-QLDLN-L 88 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~-~~~~~-~ 88 (145)
+..+...+...|++++|+..|..... .... ++ ...++.+-..+...|+++.|...|+..... . +..+. .
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 34466666677788888888888765 3222 23 236788888888888888888888887721 1 22222 3
Q ss_pred HHHHHHHHHHhcC----------------------CCc-hhhHHHHHHHHHhccC-hhHHHHHHccCCC
Q 047113 89 EHYGITVDLLATG----------------------ETE-PYVWGALLGACRIHHN-VKIGELVAKDPFH 133 (145)
Q Consensus 89 ~~~~~li~~~~~~----------------------~p~-~~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 133 (145)
.+|..+...|.+. .+. ..+|..+-.+|.+.|+ +++|...+++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4666677777665 111 4577777888888884 5777777766443
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.66 E-value=0.0002 Score=44.38 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=66.4
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC--CCCc----HHHHHHHHHHhhccchHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSD--GKPN----NVTFLSILFACSYSGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~--~~p~----~~~~~~ll~~~~~~~~~~~a~ 72 (145)
++|.+.|++. .+.+...|+.+-.+|.+.|++++|+..|+...+ .. ..++ ..+|..+-.++...|+++.|.
T Consensus 25 ~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 25 EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE-VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH-hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5677888754 345788999999999999999999999998754 21 1111 246777788889999999999
Q ss_pred HHHHHhhhhcCcCccHHHHHHH
Q 047113 73 KVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~l 94 (145)
+.|++.. . ..||..+...|
T Consensus 104 ~~~~kal-~--~~~~~~~~~~l 122 (127)
T 4gcn_A 104 QWFHRSL-S--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHH-H--HSCCHHHHHHH
T ss_pred HHHHHHH-h--hCcCHHHHHHH
Confidence 9999887 3 35665554443
No 141
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.65 E-value=0.00072 Score=50.18 Aligned_cols=119 Identities=8% Similarity=-0.083 Sum_probs=81.3
Q ss_pred CchhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cH
Q 047113 14 KNVVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NL 88 (145)
Q Consensus 14 ~~~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 88 (145)
.+...+..+...+.. .|++++|..++++... .. +.+...+..+-..+...|+++.|...+++.. . ..| +.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~~p~~~ 281 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-KA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL-E--YIPNNA 281 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH-HC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HSTTCH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH-H--hCCChH
Confidence 345566665555554 3567788888887654 22 2356678888888999999999999998887 3 334 45
Q ss_pred HHHHHHHHHHhcC------------------------------------CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 89 EHYGITVDLLATG------------------------------------ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 89 ~~~~~li~~~~~~------------------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
..+..+..+|... +.+..+|..+-..|...|++++|...|++..
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 5666555554321 4455688888899999999999999999877
Q ss_pred CCCCC
Q 047113 133 HLDPK 137 (145)
Q Consensus 133 ~~~~~ 137 (145)
+..|+
T Consensus 362 ~~~~~ 366 (472)
T 4g1t_A 362 SKELT 366 (472)
T ss_dssp HSCCC
T ss_pred hcCCC
Confidence 76653
No 142
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00014 Score=52.78 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
.|+.+-.++.+.|++++|+..|+...+ .. +-+...|..+-.++...|+++.|...|++.. .+.|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~---------- 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT-EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPD---------- 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCC----------
Confidence 789999999999999999999999866 32 2367899999999999999999999999988 23443
Q ss_pred HhcCCCchhhHHHHHHH-HHhccChhHHHHHHccCCCCCCCCCC
Q 047113 98 LATGETEPYVWGALLGA-CRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 98 ~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+...+..+... ....+..+++...|.++....|.++.
T Consensus 297 ------~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 297 ------DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------------------------------
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 22333333333 23456778888999999888776543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.64 E-value=0.00089 Score=41.90 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|.+.|+... +.+...|..+-.++.+.|++++|...|+.... .. +-+...+..+-.++...|+++.|...|+..
T Consensus 35 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL-MD-INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57888888653 34778899999999999999999999999876 33 235678888889999999999999999998
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 113 l 113 (142)
T 2xcb_A 113 R 113 (142)
T ss_dssp H
T ss_pred H
Confidence 8
No 144
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.63 E-value=0.00028 Score=51.41 Aligned_cols=118 Identities=8% Similarity=-0.088 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhcC---cC-cc
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ---LD-LN 87 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~-~~ 87 (145)
..+|..+-..+...|++++|...|++......-.++ ...+..+...+...|++++|...++....... -. ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 357889999999999999999999986541110112 23788888999999999999999988773211 11 12
Q ss_pred HHHHHHHHHHHhcC-------------------CC----chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LEHYGITVDLLATG-------------------ET----EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~~~~~li~~~~~~-------------------~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..++..+..+|.+. .+ ...++..+...|...|++++|...+++..+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55667777777665 11 134788888999999999999999987654
No 145
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.63 E-value=0.00044 Score=49.11 Aligned_cols=122 Identities=7% Similarity=-0.097 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-c
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL-N 87 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~ 87 (145)
..+|+.+...|.+.|++++|...|++.... .|-.. -..+++.+-..+.. |+++.|...+++..... +-.+ .
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 357889999999999999999999875431 12111 24577888888888 99999999998877211 1111 1
Q ss_pred HHHHHHHHHHHhcC-------------------CCc----hhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 88 LEHYGITVDLLATG-------------------ETE----PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 88 ~~~~~~li~~~~~~-------------------~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
..++..+...|.+. .++ ...+..+...+...|++++|...+++.. ..|...
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 45677777777765 111 2356666777778899999999999988 777544
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.62 E-value=0.00038 Score=41.93 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=68.5
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCC--CCc----HHHHHHHHHHhhccchHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG--KPN----NVTFLSILFACSYSGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~--~p~----~~~~~~ll~~~~~~~~~~~a~ 72 (145)
++|...|+... +.+...|..+...+.+.|++++|...|+.... ..- .++ ...+..+..++...|+++.|.
T Consensus 21 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 99 (131)
T 1elr_A 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 46777777542 34677899999999999999999999999765 321 122 678888899999999999999
Q ss_pred HHHHHhhhhcCcCccHHHHHHHHH
Q 047113 73 KVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 73 ~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
..|+... . ..|+...+..+..
T Consensus 100 ~~~~~~~-~--~~~~~~~~~~l~~ 120 (131)
T 1elr_A 100 HFYNKSL-A--EHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHH-H--HCCCHHHHHHHHH
T ss_pred HHHHHHH-H--hCCCHHHHHHHHH
Confidence 9999998 3 3345555444443
No 147
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.61 E-value=0.00045 Score=50.25 Aligned_cols=119 Identities=6% Similarity=-0.134 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcC----CCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSD----GKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL- 86 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~- 86 (145)
..+|..+-..|...|++++|...+.+...... ..+ ...+++.+-..+...|+++.|...++...... +-.+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45788999999999999999999988643111 122 24578888889999999999999998877311 1111
Q ss_pred cHHHHHHHHHHHhcC---------------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 87 NLEHYGITVDLLATG---------------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 87 ~~~~~~~li~~~~~~---------------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
...++..+..+|... .| ...++..+-..|.+.|++++|...+++..+.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 234566666666554 22 3457888889999999999999999987764
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.61 E-value=0.00041 Score=42.56 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=63.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|...|+... +.+...|..+-.++.+.|++++|+..|++..+ +.| +...+..+-.++.+.|++++|...+++
T Consensus 34 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56777777553 34778899999999999999999999999866 345 577888999999999999999999999
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 111 al 112 (121)
T 1hxi_A 111 WL 112 (121)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 149
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.61 E-value=0.00078 Score=39.73 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=62.7
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
.+...|..+-.++.+.|++++|...|+...+ .. +-+...|..+-.++...|++++|...+++......-.++.....-
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE-TD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3677899999999999999999999999876 33 225678899999999999999999999988732222334444444
Q ss_pred HHHHH
Q 047113 94 TVDLL 98 (145)
Q Consensus 94 li~~~ 98 (145)
+...+
T Consensus 83 l~~~l 87 (100)
T 3ma5_A 83 LQDAK 87 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 150
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.61 E-value=0.0012 Score=56.41 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=79.5
Q ss_pred chHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhh
Q 047113 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHD 81 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (145)
++|.++.++. .+..+|..+-.++-+.|++++|...|..- -|...|.-+..+|.+.|+++++.+.+.... +
T Consensus 1093 drAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k 1162 (1630)
T 1xi4_A 1093 DRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-K 1162 (1630)
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-h
Confidence 3455555543 34678999999999999999999999542 477788889999999999999999998766 3
Q ss_pred cCcCccHHHHHHHHHHHhcC-----------CCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 82 FQLDLNLEHYGITVDLLATG-----------ETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.. ++....+.++.+|++. .++...|..+-..|...|++++|..+|..
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 32 2222223366666665 44444445555555555555555555554
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.60 E-value=0.0019 Score=45.30 Aligned_cols=116 Identities=7% Similarity=-0.039 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH----HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc----HHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV----TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN----LEH 90 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~ 90 (145)
+...+..+.+.|++++|...+++........|+.. .+..+...+...++++.|...++.......-.++ ...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44457888999999999999999876233444422 3445677778888999999999999831111223 346
Q ss_pred HHHHHHHHhcC-------------------C-C----chhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 91 YGITVDLLATG-------------------E-T----EPYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 91 ~~~li~~~~~~-------------------~-p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
++.+..+|.+. . . ...++..+...|.+.|++++|...+++..++
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888765 1 1 1237888999999999999999999887663
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0011 Score=40.35 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=64.1
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+.. .+.+...|..+-.++.+.|++++|...|+...+ . .| +...|..+-.++...|+++.|...|+.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE-K--DPNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4677777754 234778999999999999999999999999876 3 35 577899999999999999999999998
Q ss_pred hh
Q 047113 78 MV 79 (145)
Q Consensus 78 m~ 79 (145)
..
T Consensus 98 al 99 (126)
T 3upv_A 98 AR 99 (126)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.57 E-value=0.00053 Score=42.67 Aligned_cols=116 Identities=11% Similarity=-0.001 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcCc-cHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLDL-NLE 89 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~~~ 89 (145)
+|..+-..+...|++++|...|++......-.++ ...+..+-..+...|++++|...++...... +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666666666666666666654330100011 1355555666666666666666666554211 1011 122
Q ss_pred HHHHHHHHHhcC-------------------C----CchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVDLLATG-------------------E----TEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~~~~~~-------------------~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+..+..+|... . ....++..+-..+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333333333333 1 1234677788888999999999998887554
No 154
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.56 E-value=0.0011 Score=44.48 Aligned_cols=123 Identities=6% Similarity=-0.149 Sum_probs=90.5
Q ss_pred hHHHHhccCC-CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc----hHHHHHHHHHH
Q 047113 3 DAERIFGGII-DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG----LIEEGIKVFDI 77 (145)
Q Consensus 3 ~A~~~f~~m~-~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~ 77 (145)
+|.+.|+..- ..+...+..|-..|...+++++|...|+...+ .| +...+..+-..+.. + ++++|...|++
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4666666543 35777888888888889999999999998877 44 56677777777777 6 88899999988
Q ss_pred hhhhcCcCccHHHHHHHHHHHhc----C----------------CCc---hhhHHHHHHHHHh----ccChhHHHHHHcc
Q 047113 78 MVHDFQLDLNLEHYGITVDLLAT----G----------------ETE---PYVWGALLGACRI----HHNVKIGELVAKD 130 (145)
Q Consensus 78 m~~~~~~~~~~~~~~~li~~~~~----~----------------~p~---~~~~~~li~~~~~----~g~~~~a~~~~~~ 130 (145)
.. +.| +...+..|-..|.. . .|. ..++..|-..|.. .+++++|...|++
T Consensus 79 A~-~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AV-EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HH-HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HH-HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 87 544 45566666666754 1 321 5777888888877 7788999988888
Q ss_pred CCCC
Q 047113 131 PFHL 134 (145)
Q Consensus 131 ~~~~ 134 (145)
..+.
T Consensus 155 A~~~ 158 (212)
T 3rjv_A 155 SSSL 158 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7655
No 155
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.49 E-value=0.0014 Score=47.64 Aligned_cols=118 Identities=6% Similarity=0.030 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcC---cCccHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQ---LDLNLE 89 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~ 89 (145)
..+++.|-..|.+.|++++|...|.+.... .+-+....++..+-..+.+.|+++.|...+++...... -.....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 357889999999999999999999886430 13333466888899999999999999999998873222 111233
Q ss_pred HHHHHHHHHhcC------------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVDLLATG------------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~~~~~~------------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+..+-..|... .| ....+..+-..|...|++++|...+++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444332 11 223566788899999999999999987654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.45 E-value=0.0012 Score=43.45 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
..|..+-.++.+.|++++|...++.... .. +.+...+..+-.++...|+++.|...|+... . +.|+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~~p~--------- 154 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK-ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA-S--LNPN--------- 154 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H--HSTT---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH-H--HCCC---------
Confidence 7899999999999999999999999876 32 3367788999999999999999999999988 3 2342
Q ss_pred HHhcCCCchhhHHHHHHHHHhccChhHHH-HHHccCC
Q 047113 97 LLATGETEPYVWGALLGACRIHHNVKIGE-LVAKDPF 132 (145)
Q Consensus 97 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 132 (145)
+...+..+-..+...|+.+++. ..+..+.
T Consensus 155 -------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 155 -------NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHC----------
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555554 3444433
No 157
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.45 E-value=0.00017 Score=51.99 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=76.7
Q ss_pred chHHHHhccCCC--C-----chhhHHHHHHH--HHHcC--ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHH
Q 047113 2 DDAERIFGGIID--K-----NVVIWSGMIAS--HAIHG--QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEE 70 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-----~~~~~~~li~a--~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 70 (145)
+.|.+.|++|.. | +-.+.-.|..+ ....| ++.+|..+|+++.. -.|+..+-..++.++.+.|++++
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~e 229 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHH
Confidence 678999998864 4 23455555555 33334 99999999999865 23554454566668999999999
Q ss_pred HHHHHHHhhhhc----C---cCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 71 GIKVFDIMVHDF----Q---LDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 71 a~~~~~~m~~~~----~---~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
|+..++.+.... + ..|+ |..+...+|-.....|+ +|.+++.++.+..|+.|
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~----------------~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLY----------------KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSS----------------HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcccccccccCCCC----------------CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999999776221 1 0232 33333233333333455 77888888888888765
No 158
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00068 Score=51.09 Aligned_cols=94 Identities=16% Similarity=0.001 Sum_probs=71.2
Q ss_pred HcCChHHHHHHHHHhHhh--cCCCC---c-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 28 IHGQEREALEAFYLVIHC--SDGKP---N-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 28 ~~g~~~~A~~~~~~m~~~--~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
..|++++|..++++.... .-+-| + ..+++.+..+|...|++++|+.++++... ..-..|+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------i~~~~lG~~ 377 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------PYSKHYPVY 377 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHSCSS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHHcCCC
Confidence 357899999999885321 22333 3 46899999999999999999999998872 122233333
Q ss_pred CCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 102 ETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 102 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.|++ .+++.|-..|...|++++|+.++++..+
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5555 5889999999999999999999998665
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.38 E-value=0.0018 Score=39.66 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=63.7
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIM 78 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (145)
++|...|+... +.+...|..+...+.+.|++++|...|+.... .. +.+...+..+-.++...|+++.|...|+..
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LD-GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46777777542 34678899999999999999999999999876 33 236778999999999999999999999988
Q ss_pred h
Q 047113 79 V 79 (145)
Q Consensus 79 ~ 79 (145)
.
T Consensus 104 ~ 104 (137)
T 3q49_B 104 Y 104 (137)
T ss_dssp H
T ss_pred H
Confidence 8
No 160
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.0045 Score=34.86 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~ 93 (145)
+...|..+-..+.+.|++++|...|++... .. +.+...+..+-..+.+.|++++|...+++.. . ..| +...+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~--~~p~~~~~~~~ 82 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-E--LDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h--cCCCCHHHHHH
Confidence 456788899999999999999999999866 33 2367788889999999999999999999988 3 234 4555555
Q ss_pred HHHHH
Q 047113 94 TVDLL 98 (145)
Q Consensus 94 li~~~ 98 (145)
+..++
T Consensus 83 l~~~~ 87 (91)
T 1na3_A 83 LGNAK 87 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.00072 Score=51.74 Aligned_cols=97 Identities=10% Similarity=-0.075 Sum_probs=73.2
Q ss_pred HHHHcCChHHHHHHHHHhHhh--cCC---CCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHH
Q 047113 25 SHAIHGQEREALEAFYLVIHC--SDG---KPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLL 98 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~--~~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 98 (145)
.+...|++++|..++++.... .-+ .|+ ..+++.+..+|...|++++|+.++++... .....|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------i~~~~l 385 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------GYMKLY 385 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------HHHHHc
Confidence 355789999999999875321 222 233 45899999999999999999999998872 112233
Q ss_pred hcCCCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 99 ATGETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 99 ~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+...|++ .+++.|-..|...|++++|+.++++..+
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334554 5789999999999999999999998665
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0038 Score=38.38 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=62.7
Q ss_pred chHHHHhccCCC--Cc----hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID--KN----VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~----~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|.+.|+.... |+ ...|..+...+.+.|++++|...|+.... . .| +...+..+-.++...|+++.|...
T Consensus 45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-K--DGGDVKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--TSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-h--CccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467777775532 44 67899999999999999999999999866 3 34 677888889999999999999999
Q ss_pred HHHhh
Q 047113 75 FDIMV 79 (145)
Q Consensus 75 ~~~m~ 79 (145)
|++..
T Consensus 122 ~~~al 126 (148)
T 2dba_A 122 LQRCV 126 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 163
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0016 Score=49.01 Aligned_cols=100 Identities=11% Similarity=-0.069 Sum_probs=75.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhh--cCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 22 MIASHAIHGQEREALEAFYLVIHC--SDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~--~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.+..+.+.|++++|..++++.... .-+-|+ ..+++.+..+|...|++++|+.++++...- .-
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i------------~~ 360 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP------------YR 360 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------------HH
Confidence 356677889999999999987531 223332 458899999999999999999999988721 11
Q ss_pred HHHhcCCCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 96 DLLATGETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 96 ~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
..|+...|+. .+++.|-..|...|++++|+.++++..+
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2223334444 5788899999999999999999998665
No 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.33 E-value=0.0011 Score=52.54 Aligned_cols=124 Identities=9% Similarity=-0.035 Sum_probs=92.9
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDI 77 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 77 (145)
++|.+.|+... +.+...|..+-.++.+.|++++|...|++..+ +.| +...|..+-.++.+.|++++ ...|++
T Consensus 450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 56777777653 34678899999999999999999999999866 345 57788899999999999999 999998
Q ss_pred hhhhcCcCc-cHHHHHHHHHHHhcC----------------CCc-hhhHHHHHHHHHhcc--------ChhHHHHHHccC
Q 047113 78 MVHDFQLDL-NLEHYGITVDLLATG----------------ETE-PYVWGALLGACRIHH--------NVKIGELVAKDP 131 (145)
Q Consensus 78 m~~~~~~~~-~~~~~~~li~~~~~~----------------~p~-~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 131 (145)
.. + +.| +...|..+..+|.+. .|+ ...|..+..++...| ++++|.+.+..+
T Consensus 526 al-~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 526 VW-S--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HH-H--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 88 3 344 567788888877766 444 467777777776544 366666666555
Q ss_pred C
Q 047113 132 F 132 (145)
Q Consensus 132 ~ 132 (145)
.
T Consensus 603 ~ 603 (681)
T 2pzi_A 603 P 603 (681)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.30 E-value=0.0034 Score=45.13 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=100.0
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCChH--HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch------HHH
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQER--EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL------IEE 70 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~------~~~ 70 (145)
+++.++++.+ .++|-.+|+--.-...+.|+++ ++++.++.+.+ ...+ |-..|+.--....+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 3556666655 3457889998888889999998 99999999987 5533 77788877766777665 888
Q ss_pred HHHHHHHhhhhcCcCccHHHHHHHHHHHhcC---------------------CCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 71 GIKVFDIMVHDFQLDLNLEHYGITVDLLATG---------------------ETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 71 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
+.+.++... ... .-|...|+.+--.+.+. ..+...+..+..+|.+.|+.++|.++++
T Consensus 205 El~~~~~aI-~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKI-VKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHH-HHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHH-HhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888887 322 23677776555555443 1255788889999999999999999999
Q ss_pred cCCC-CCCCCC
Q 047113 130 DPFH-LDPKND 139 (145)
Q Consensus 130 ~~~~-~~~~~~ 139 (145)
.+.+ .+|-..
T Consensus 283 ~l~~~~Dpir~ 293 (306)
T 3dra_A 283 LLKSKYNPIRS 293 (306)
T ss_dssp HHHHTTCGGGH
T ss_pred HHHhccChHHH
Confidence 9885 777543
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.29 E-value=0.0029 Score=38.21 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=61.0
Q ss_pred chHHHHhccCCC--C-ch---hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHH
Q 047113 2 DDAERIFGGIID--K-NV---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 2 ~~A~~~f~~m~~--~-~~---~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a 71 (145)
++|.+.|+.... | +. ..|..+-.++.+.|++++|...|+.... .. |+ ...+..+-.++.+.|+++.|
T Consensus 19 ~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~~~~la~~~~~~g~~~~A 95 (129)
T 2xev_A 19 DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-RY--PTHDKAAGGLLKLGLSQYGEGKNTEA 95 (129)
T ss_dssp HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HC--CCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 467777776532 3 33 4788889999999999999999999876 32 43 56678888889999999999
Q ss_pred HHHHHHhhh
Q 047113 72 IKVFDIMVH 80 (145)
Q Consensus 72 ~~~~~~m~~ 80 (145)
...|+....
T Consensus 96 ~~~~~~~~~ 104 (129)
T 2xev_A 96 QQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999983
No 167
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.0012 Score=47.61 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccch--------------------HHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGL--------------------IEEG 71 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~--------------------~~~a 71 (145)
..+|..+...+...|++++|...|++......-.++ ..++..+-..+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 446777777777778888777777765430110111 3366667777777777 7777
Q ss_pred HHHHHHhhhh---cCcCc-cHHHHHHHHHHHhcC-------------------CCc----hhhHHHHHHHHHhccChhHH
Q 047113 72 IKVFDIMVHD---FQLDL-NLEHYGITVDLLATG-------------------ETE----PYVWGALLGACRIHHNVKIG 124 (145)
Q Consensus 72 ~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~-------------------~p~----~~~~~~li~~~~~~g~~~~a 124 (145)
...+...... .+-.| ...++..+...|... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665421 11111 133444555444433 111 22566666666677777777
Q ss_pred HHHHccCCC
Q 047113 125 ELVAKDPFH 133 (145)
Q Consensus 125 ~~~~~~~~~ 133 (145)
...+++..+
T Consensus 247 ~~~~~~al~ 255 (406)
T 3sf4_A 247 SEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666544
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.23 E-value=0.00094 Score=48.57 Aligned_cols=118 Identities=6% Similarity=-0.106 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC-cHHHHHHHHHHhhccch-----------------HHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP-NNVTFLSILFACSYSGL-----------------IEEGIKV 74 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~ 74 (145)
..+|..+-..|...|++++|...|++.... .+-.| ....+..+-..+...|+ ++.|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777778888888888888887775430 11122 34466777777777777 7777777
Q ss_pred HHHhhhh---cCcCc-cHHHHHHHHHHHhcC-------------------CCc----hhhHHHHHHHHHhccChhHHHHH
Q 047113 75 FDIMVHD---FQLDL-NLEHYGITVDLLATG-------------------ETE----PYVWGALLGACRIHHNVKIGELV 127 (145)
Q Consensus 75 ~~~m~~~---~~~~~-~~~~~~~li~~~~~~-------------------~p~----~~~~~~li~~~~~~g~~~~a~~~ 127 (145)
+++.... .+-.+ ....+..+...|... .++ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7665421 11111 233455555555544 111 12566666777777777777777
Q ss_pred HccCCC
Q 047113 128 AKDPFH 133 (145)
Q Consensus 128 ~~~~~~ 133 (145)
+++..+
T Consensus 286 ~~~al~ 291 (411)
T 4a1s_A 286 YKRTLA 291 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 169
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.22 E-value=0.0019 Score=37.43 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHH-HHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKP-NNV-TFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
....+.+.|++++|...|+...+ . .| +.. .+..+-.++...|+++.|...|+... . ..|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~~p~------------ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-T--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-E--LNPD------------ 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-H--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H--HCTT------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCC------------
Confidence 44567889999999999999876 3 34 566 88888889999999999999999998 3 2332
Q ss_pred cCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 100 TGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+...+.. +.+.++...+++.....|+++
T Consensus 68 ----~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 68 ----SPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ----STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred ----cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 1222211 567777777777776665444
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.22 E-value=0.00025 Score=46.24 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=69.9
Q ss_pred HHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchH----------HHHHHHHHHhhhhcCcCcc-HHHHHH
Q 047113 26 HAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLI----------EEGIKVFDIMVHDFQLDLN-LEHYGI 93 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~-~~~~~~ 93 (145)
..|.+++++|...++...+ . .| +...|+.+-.++.+.+++ ++|...|++.. .+.|+ ...|..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~-l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~ 85 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK-S--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHH
Confidence 3577789999999999866 3 45 677888888888887765 47888787777 35553 445555
Q ss_pred HHHHHhcC---CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 94 TVDLLATG---ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 94 li~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
+..+|.+. .|+.. ...|++++|...|++..+++|+++.
T Consensus 86 LG~ay~~lg~l~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDET---------EAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhcccCcchh---------hhhccHHHHHHHHHHHHHhCCCCHH
Confidence 55544433 33331 1126999999999999999997654
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.21 E-value=0.0013 Score=45.77 Aligned_cols=118 Identities=8% Similarity=-0.017 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccch--------------------HHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGL--------------------IEEG 71 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~--------------------~~~a 71 (145)
..+|..+...+...|++++|...|.+......-.++ ..++..+-..+...|+ ++.|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 456777788888888888888888775431111112 3366777777777888 7777
Q ss_pred HHHHHHhhhh---cCcCc-cHHHHHHHHHHHhcC-------------------CC----chhhHHHHHHHHHhccChhHH
Q 047113 72 IKVFDIMVHD---FQLDL-NLEHYGITVDLLATG-------------------ET----EPYVWGALLGACRIHHNVKIG 124 (145)
Q Consensus 72 ~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~-------------------~p----~~~~~~~li~~~~~~g~~~~a 124 (145)
...++..... .+-.+ ....+..+...|... .+ ...++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777765421 11111 133444444444433 11 122566666777777777777
Q ss_pred HHHHccCCC
Q 047113 125 ELVAKDPFH 133 (145)
Q Consensus 125 ~~~~~~~~~ 133 (145)
...+++..+
T Consensus 243 ~~~~~~al~ 251 (338)
T 3ro2_A 243 SEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.21 E-value=0.016 Score=40.57 Aligned_cols=112 Identities=9% Similarity=-0.048 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCC---CCc--HHHHHHHHHHhhccchHHHHHHHHHHhhhh---cCcCc--cH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDG---KPN--NVTFLSILFACSYSGLIEEGIKVFDIMVHD---FQLDL--NL 88 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~--~~ 88 (145)
+..+...+...|++++|+..|..... ... .+. ..+|+.+-..+...|+++.|...+++.... .+-.+ ..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 34455566677788888888877543 111 111 347777788888888888888888877621 11111 12
Q ss_pred HHHHHHHHHHhcC----------------CC-------chhhHHHHHHHHHhccChhHH-HHHHccC
Q 047113 89 EHYGITVDLLATG----------------ET-------EPYVWGALLGACRIHHNVKIG-ELVAKDP 131 (145)
Q Consensus 89 ~~~~~li~~~~~~----------------~p-------~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 131 (145)
.+|..+..+|.+. .+ -..+|..+-..|.+.|++++| ...+++.
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4666666666655 11 145677777888888888888 6656543
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.21 E-value=0.0038 Score=47.74 Aligned_cols=105 Identities=9% Similarity=-0.074 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHh----hcC-CCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIH----CSD-GKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~----~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
.++|.|..+|...|++++|..++.+... ..| -.|+ ..+++.|-..|...|++++|+.++++...
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~---------- 421 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA---------- 421 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
Confidence 5899999999999999999999988532 022 2344 55899999999999999999999998772
Q ss_pred HHHHHHHHhcCCCch-hhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 91 YGITVDLLATGETEP-YVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 91 ~~~li~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.+-..++...|++ .+.+.+-.++...|.+++|+.++.++.+
T Consensus 422 --i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 422 --ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp --HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333433 3456666788888999999999988765
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.18 E-value=0.004 Score=46.89 Aligned_cols=89 Identities=8% Similarity=-0.028 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 16 VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 16 ~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
...|+.+-.++.+.|++++|+..|+...+ .. +.+...|..+-.++...|+++.|...|++.. . +.|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~--l~P~-------- 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG-LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL-E--VNPQ-------- 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--TC----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--hCCC--------
Confidence 57899999999999999999999999876 33 2368899999999999999999999999998 3 4443
Q ss_pred HHHhcCCCchhhHHHHHHHHHhccChhHHH
Q 047113 96 DLLATGETEPYVWGALLGACRIHHNVKIGE 125 (145)
Q Consensus 96 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 125 (145)
+...+..+-..+.+.|+.+++.
T Consensus 384 --------~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 --------NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666554
No 175
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.13 E-value=0.02 Score=39.98 Aligned_cols=118 Identities=8% Similarity=-0.036 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHhhccchHHHHHHHHHHhhhhc--CcCcc--H
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN----VTFLSILFACSYSGLIEEGIKVFDIMVHDF--QLDLN--L 88 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~--~ 88 (145)
..+...+..+...|++++|.+.+..........++. ..+..+...+...|+++.|...++...... ...+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 456677888999999999999998866512222211 233445566778899999999999876211 11222 4
Q ss_pred HHHHHHHHHHhcC-------------------CCc-----hhhHHHHHHHHHhccChhHHHHHHccCCCC
Q 047113 89 EHYGITVDLLATG-------------------ETE-----PYVWGALLGACRIHHNVKIGELVAKDPFHL 134 (145)
Q Consensus 89 ~~~~~li~~~~~~-------------------~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 134 (145)
.+|+.+...|... .|+ ..+++.+...|...|++++|...+++..++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5778888888766 232 258889999999999999999999986653
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.10 E-value=0.0025 Score=46.82 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=70.6
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
+...|+.+-.++.+.|++++|+..+++..+ +.| +...|..+-.++...|++++|...|++.. + +.|+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~--l~P~------ 339 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-E--IAPE------ 339 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--hCCC------
Confidence 567899999999999999999999999865 345 67788999999999999999999999988 3 3343
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhccChhHHHH
Q 047113 94 TVDLLATGETEPYVWGALLGACRIHHNVKIGEL 126 (145)
Q Consensus 94 li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 126 (145)
+...+..+-..+...++.+++.+
T Consensus 340 ----------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 340 ----------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666654
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.07 E-value=0.0016 Score=42.33 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=69.1
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCCh----------HHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccc-
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQE----------REALEAFYLVIHCSDGKP-NNVTFLSILFACSYSG- 66 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~~----------~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~- 66 (145)
++|.+.++.. .+.+...|+.+-.++.+.+++ ++|+..|++..+ +.| +...|..+-.++...|
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHhcc
Confidence 5566666644 344778888888888888765 599999999866 456 5678888888998764
Q ss_pred ----------hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 67 ----------LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 67 ----------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
++++|...|++.. .+.|+-..|...+...-
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl---~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAV---DEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHH---HhCCCCHHHHHHHHHHH
Confidence 8999999999998 46777666665555443
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.05 E-value=0.016 Score=46.09 Aligned_cols=134 Identities=6% Similarity=-0.071 Sum_probs=83.9
Q ss_pred chHH-HHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCC---------CC------------cHHHHH
Q 047113 2 DDAE-RIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDG---------KP------------NNVTFL 56 (145)
Q Consensus 2 ~~A~-~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~---------~p------------~~~~~~ 56 (145)
++|. ++|+.-. +++...|-..+...-+.|++++|..+|+.+.. ... .| ....|.
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID-RIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 3454 6666432 23455677777778888888888888888765 210 13 133677
Q ss_pred HHHHHhhccchHHHHHHHHHHhhhh-cCcCccHHHHHHHHHHHh-cC---------------CCchhhHHHHHHHHHhcc
Q 047113 57 SILFACSYSGLIEEGIKVFDIMVHD-FQLDLNLEHYGITVDLLA-TG---------------ETEPYVWGALLGACRIHH 119 (145)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~~li~~~~-~~---------------~p~~~~~~~li~~~~~~g 119 (145)
..+....+.|+.+.|..+|...... ....+.+....+.+.-.. +. +.+...|...++-....|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 7777778888888888888888732 122223333333333221 11 445566777777777788
Q ss_pred ChhHHHHHHccCCCCCC
Q 047113 120 NVKIGELVAKDPFHLDP 136 (145)
Q Consensus 120 ~~~~a~~~~~~~~~~~~ 136 (145)
+.+.|+.+|++.....|
T Consensus 519 ~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 519 EESQVKSLFESSIDKIS 535 (679)
T ss_dssp CHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 88888888888666444
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0024 Score=37.49 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=56.6
Q ss_pred CcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHc
Q 047113 50 PNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAK 129 (145)
Q Consensus 50 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 129 (145)
++...+..+-..+...|++++|...|+... . ..|+ +...|..+-.++...|++++|...++
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~--~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLI-T--AQPQ----------------NPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHH-H--HCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCC----------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356678888889999999999999999988 3 2332 45667777888889999999999999
Q ss_pred cCCCCCCCC
Q 047113 130 DPFHLDPKN 138 (145)
Q Consensus 130 ~~~~~~~~~ 138 (145)
+..+..|++
T Consensus 63 ~al~~~p~~ 71 (111)
T 2l6j_A 63 QGLRYTSTA 71 (111)
T ss_dssp HHHTSCSST
T ss_pred HHHHhCCCc
Confidence 988888865
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.97 E-value=0.0046 Score=39.29 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+...|..+-.+|.+.|++++|+..++.... .. +.+...|..+-.++...|+++.|...|+...
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK-RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 346899999999999999999999999876 33 2367899999999999999999999999988
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.96 E-value=0.0011 Score=39.78 Aligned_cols=82 Identities=7% Similarity=0.014 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHH
Q 047113 33 REALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGAL 111 (145)
Q Consensus 33 ~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~l 111 (145)
++|...|++..+ ..| +...+..+-..+...|+++.|...++... . ..|+ +...|..+
T Consensus 2 ~~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~----------------~~~~~~~l 59 (115)
T 2kat_A 2 QAITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-D--FDPT----------------YSVAWKWL 59 (115)
T ss_dssp CCHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT----------------CHHHHHHH
T ss_pred hHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--HCCC----------------cHHHHHHH
Confidence 356777877654 334 67788999999999999999999999988 3 2332 44556666
Q ss_pred HHHHHhccChhHHHHHHccCCCCCC
Q 047113 112 LGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 112 i~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
-..|...|++++|...+++..+..|
T Consensus 60 a~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 60 GKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 7777778888888888777655443
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.95 E-value=0.0048 Score=40.14 Aligned_cols=133 Identities=9% Similarity=-0.056 Sum_probs=86.6
Q ss_pred hHHHHhccCCCC--chhhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC--cHHHHHHHHHHhhccchHHHHHHHH
Q 047113 3 DAERIFGGIIDK--NVVIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP--NNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 3 ~A~~~f~~m~~~--~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
+|.++++....+ ...+++.+-..+...|++++|...|++.... .+-.| ....+..+-..+...|++++|...+
T Consensus 51 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 51 ALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344444444332 3567999999999999999999999986541 12122 2346788888899999999999999
Q ss_pred HHhhhhcCc--Cc--cHHHHHHHHHHHhcC-CC--chhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 76 DIMVHDFQL--DL--NLEHYGITVDLLATG-ET--EPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 76 ~~m~~~~~~--~~--~~~~~~~li~~~~~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
++......- .+ -..++..+..+|.+. .+ -...+...+..+.+.|+....-.+...+....
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 987622111 11 133355666666655 22 23467777777778887766656555555543
No 183
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.89 E-value=0.045 Score=41.11 Aligned_cols=60 Identities=7% Similarity=-0.184 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHHHHHHHhh
Q 047113 16 VVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGIKVFDIMV 79 (145)
Q Consensus 16 ~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~ 79 (145)
...+..|-..|.. .+++++|...|+...+ .| +...+..+-..+.. .+++++|...|++..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 142 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA 142 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3344444444444 4455555555544443 22 33333333333333 344444444444444
No 184
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.87 E-value=0.037 Score=41.56 Aligned_cols=90 Identities=8% Similarity=-0.138 Sum_probs=45.7
Q ss_pred hHHHHhccCCC-CchhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHHH
Q 047113 3 DAERIFGGIID-KNVVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGIK 73 (145)
Q Consensus 3 ~A~~~f~~m~~-~~~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~ 73 (145)
+|.+.|+..-+ .+...+..|-..|.. .+++++|...|+...+ .| +...+..+-..+.. .++++.|..
T Consensus 97 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 97 QAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444443322 244455555555555 5566666666666555 33 34444444444444 556666666
Q ss_pred HHHHhhhhcCcCccHHHHHHHHHHHhc
Q 047113 74 VFDIMVHDFQLDLNLEHYGITVDLLAT 100 (145)
Q Consensus 74 ~~~~m~~~~~~~~~~~~~~~li~~~~~ 100 (145)
.|++.. +.| +...+..|...|.+
T Consensus 173 ~~~~a~-~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 173 WYSKAA-EQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp HHHHHH-HTT---CHHHHHHHHHHHHH
T ss_pred HHHHHH-HCC---CHHHHHHHHHHHhc
Confidence 666655 322 34444444444443
No 185
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.81 E-value=0.023 Score=36.33 Aligned_cols=76 Identities=5% Similarity=0.094 Sum_probs=61.8
Q ss_pred chHHHHhccCC---CCchhhHHHHHHH-HHHcCCh--HHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIAS-HAIHGQE--REALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a-~~~~g~~--~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
++|.+.|+... +.+...|..+..+ +.+.|++ ++|...|+.... .. +-+...+..+...+...|+++.|...+
T Consensus 61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA-LD-SNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 46777777553 3467788888888 8899998 999999999876 33 225778888889999999999999999
Q ss_pred HHhh
Q 047113 76 DIMV 79 (145)
Q Consensus 76 ~~m~ 79 (145)
+...
T Consensus 139 ~~al 142 (177)
T 2e2e_A 139 QKVM 142 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9988
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.80 E-value=0.001 Score=37.66 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 51 NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
+...+..+-..+...|+++.|...++... .. .|+ +...|..+-..+...|++++|...+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~--~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL-EL--DPN----------------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHH-hc--CCC----------------CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677788888999999999999999988 32 232 455677788889999999999999999
Q ss_pred CCCCCCCCCCC
Q 047113 131 PFHLDPKNDAY 141 (145)
Q Consensus 131 ~~~~~~~~~~~ 141 (145)
..+..|+++..
T Consensus 69 a~~~~p~~~~~ 79 (91)
T 1na3_A 69 ALELDPNNAEA 79 (91)
T ss_dssp HHHHCTTCHHH
T ss_pred HHhcCCCCHHH
Confidence 88888866543
No 187
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.0085 Score=51.35 Aligned_cols=108 Identities=7% Similarity=-0.105 Sum_probs=73.6
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGI 93 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 93 (145)
++...|..+-..|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWke 1255 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE 1255 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHH
Confidence 45555666667777777777777777652 367777777777777777777776654 3455655
Q ss_pred HHHHHhcC-------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCC
Q 047113 94 TVDLLATG-------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 94 li~~~~~~-------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 138 (145)
+-.+|... ..+...+..++.-|.+.|.+++|.++++....+++..
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 54444322 3345566788899999999999999998877766543
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.80 E-value=0.034 Score=37.08 Aligned_cols=126 Identities=6% Similarity=-0.142 Sum_probs=91.9
Q ss_pred chHHHHhccCCC-CchhhHHHHHHHHHHcC----ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHH
Q 047113 2 DDAERIFGGIID-KNVVIWSGMIASHAIHG----QEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGI 72 (145)
Q Consensus 2 ~~A~~~f~~m~~-~~~~~~~~li~a~~~~g----~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 72 (145)
++|.+.|+..-. .+...+..|-..|.+ + ++++|...|+...+ .| +...+..+-..+.. .+++++|.
T Consensus 35 ~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 109 (212)
T 3rjv_A 35 QKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAI 109 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHH
Confidence 467777775533 467778888888877 6 89999999999877 43 66677777777776 88999999
Q ss_pred HHHHHhhhhcCcC-ccHHHHHHHHHHHhcC-------------------C-CchhhHHHHHHHHHhc-c-----ChhHHH
Q 047113 73 KVFDIMVHDFQLD-LNLEHYGITVDLLATG-------------------E-TEPYVWGALLGACRIH-H-----NVKIGE 125 (145)
Q Consensus 73 ~~~~~m~~~~~~~-~~~~~~~~li~~~~~~-------------------~-p~~~~~~~li~~~~~~-g-----~~~~a~ 125 (145)
..|++.. +.|-. .+...+..|-.+|... . .+...+..|-..|... | ++++|.
T Consensus 110 ~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~ 188 (212)
T 3rjv_A 110 TLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188 (212)
T ss_dssp HHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHH
T ss_pred HHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 9999998 54432 1266777777777662 3 5666777777777654 3 889999
Q ss_pred HHHccCCC
Q 047113 126 LVAKDPFH 133 (145)
Q Consensus 126 ~~~~~~~~ 133 (145)
..+++..+
T Consensus 189 ~~~~~A~~ 196 (212)
T 3rjv_A 189 HWLNVSCL 196 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887554
No 189
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.71 E-value=0.067 Score=38.32 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCC--C--cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGK--P--NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
..+..+-..+...|++++|...+++... ..-. + ....+..+-..+...|++++|...++.......-......+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 4677788899999999999999998654 2211 1 235677888889999999999999998872211111111121
Q ss_pred H-----HHHHHhcC----------------CCc-----hhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 93 I-----TVDLLATG----------------ETE-----PYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 93 ~-----li~~~~~~----------------~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
. .+..+... .|. ...+..+...+...|++++|...+++...
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11222222 111 12456666777788888888887776544
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.025 Score=41.28 Aligned_cols=116 Identities=7% Similarity=-0.201 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH----HHHHHHHHhhccchHHHHHHHHHHhhhh---cCcCc-cHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNV----TFLSILFACSYSGLIEEGIKVFDIMVHD---FQLDL-NLE 89 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~~ 89 (145)
++..|...|.+.|++++|.+.+.......+-.++.. ..+.+-..+...|+++.+..++...... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 478899999999999999999998754233233332 2233334445678889999888877631 22222 244
Q ss_pred HHHHHHHHHhcC----------------------CC-chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVDLLATG----------------------ET-EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~~~~~~----------------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
++..|...|... .+ ...++..++..|...|++++|..++++...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 555666665544 22 235899999999999999999999887655
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.54 E-value=0.01 Score=47.18 Aligned_cols=119 Identities=9% Similarity=-0.037 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhc-C-CCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCS-D-GKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
..|-..+....+.|..+.|..+|....+ . + ..+......+.+.-.. .++.+.|..+|+...+. +.-+...|...
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y 510 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY--FATDGEYINKY 510 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCchHHHHHH
Confidence 3688889988999999999999999877 4 2 2233334444444332 35689999999999843 33355566666
Q ss_pred HHHHhcC----------------CC----chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 95 VDLLATG----------------ET----EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 95 i~~~~~~----------------~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
++..... .| ....|...+.-=...|+.+.+..+.+++.+..|+++
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 6544322 33 235788888888889999999999999999888655
No 192
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.51 E-value=0.019 Score=40.58 Aligned_cols=120 Identities=6% Similarity=-0.104 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhhhh---cCcCc-cH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMVHD---FQLDL-NL 88 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~ 88 (145)
..|+.....|...|++++|...|...... .+-.+. ..+|+.+...+.+.|++++|...+++...- .|-.. -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36888889999999999999999886441 121111 458888999999999999999999877621 12111 24
Q ss_pred HHHHHHHHHHhcC---------------CC-------chhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 89 EHYGITVDLLATG---------------ET-------EPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 89 ~~~~~li~~~~~~---------------~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
.++..+..+|.+. .| ...+++.+-..|.+.|++++|...+++..++.|
T Consensus 117 ~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5666666666432 11 145788889999999999999999998776443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.51 E-value=0.0048 Score=40.18 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhc-----CCCCc-HHHH----HHHHHHhhccchHHHHHHHHHHhhh----hcC
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCS-----DGKPN-NVTF----LSILFACSYSGLIEEGIKVFDIMVH----DFQ 83 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~-----~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~----~~~ 83 (145)
.|+.+-.++.+.|++++|+..|+...+ . .+.|+ ...| ...-.++...|++++|...|++... +.|
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~-l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH-YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 899999999999999999999999876 3 22675 5688 8888999999999999999998873 345
Q ss_pred cCccHHH
Q 047113 84 LDLNLEH 90 (145)
Q Consensus 84 ~~~~~~~ 90 (145)
+.+....
T Consensus 138 ~~~~~~~ 144 (159)
T 2hr2_A 138 ETPGKER 144 (159)
T ss_dssp CCTTHHH
T ss_pred HHHHHHH
Confidence 5544333
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.50 E-value=0.053 Score=40.60 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=79.7
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHcC---ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc----chHHHHHHHHH
Q 047113 4 AERIFGGIIDKNVVIWSGMIASHAIHG---QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS----GLIEEGIKVFD 76 (145)
Q Consensus 4 A~~~f~~m~~~~~~~~~~li~a~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~ 76 (145)
|..++......+...+..|-..|.+.| +.++|...|+...+ .| .++...+..+-..+... +++++|...|+
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 444555555556668888888999999 89999999998877 66 34555444555555444 68888888888
Q ss_pred HhhhhcCcCccHHHHHHHHHHHh----cC--------------CCchhhHHHHHHHHHhcc-----ChhHHHHHHccCC
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLA----TG--------------ETEPYVWGALLGACRIHH-----NVKIGELVAKDPF 132 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~----~~--------------~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~ 132 (145)
... .-+...+..|..+|. .. ..+...+..|-..|. .| ++++|...|++..
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 875 223445555555522 11 335556666666665 55 8888888888765
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.47 E-value=0.062 Score=38.48 Aligned_cols=116 Identities=8% Similarity=-0.056 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccchHHHHHHHHHHhhhhc---CcC--c-c
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSGLIEEGIKVFDIMVHDF---QLD--L-N 87 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~--~-~ 87 (145)
.++.+-..+...|++++|...+++......-.++ ..+++.+-..+...|+++.|...++...... +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 5777778889999999999999886431111112 2335667778889999999999998877321 222 3 2
Q ss_pred HHHHHHHHHHHhcC----------------CC------chhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LEHYGITVDLLATG----------------ET------EPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~~~~~li~~~~~~----------------~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
...+..+...|... .+ ...++..+-..+...|++++|...+++..+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666544 11 234677888889999999999999988765
No 196
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.37 E-value=0.038 Score=39.27 Aligned_cols=90 Identities=8% Similarity=-0.113 Sum_probs=66.4
Q ss_pred chHHHHhccCCC-Cc----hhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhccchHHHHHHH
Q 047113 2 DDAERIFGGIID-KN----VVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 2 ~~A~~~f~~m~~-~~----~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
++|++.|+.... ++ ...+..+-.++.+.|++++|+..|++... ....|. .......-.++.+.|+.++|..+
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 567888876543 22 23688889999999999999999999865 443253 33556666778999999999999
Q ss_pred HHHhhhhcCcCccHHHHHHHH
Q 047113 75 FDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 75 ~~~m~~~~~~~~~~~~~~~li 95 (145)
|+++. . ..|+...+..|.
T Consensus 231 l~~a~-a--~~P~~~~~~aL~ 248 (282)
T 4f3v_A 231 LEWLQ-T--THPEPKVAAALK 248 (282)
T ss_dssp HHHHH-H--HSCCHHHHHHHH
T ss_pred HHHHH-h--cCCcHHHHHHHh
Confidence 99998 3 355555555554
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.34 E-value=0.015 Score=34.00 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 51 NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
+...+..+-..+.+.|++++|...|++.. + ..|+ +...|..+-.+|...|++++|...+++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELV-E--TDPD----------------YVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HSTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788888899999999999999999998 3 2332 445666677777777788777777776
Q ss_pred CCCC
Q 047113 131 PFHL 134 (145)
Q Consensus 131 ~~~~ 134 (145)
..++
T Consensus 67 al~l 70 (100)
T 3ma5_A 67 GIEV 70 (100)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5543
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.032 Score=40.70 Aligned_cols=109 Identities=8% Similarity=-0.057 Sum_probs=73.8
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCC-Cc---------------HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGK-PN---------------NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~-p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 87 (145)
..+.+.|++++|.+.|....+ ..-. .+ ...+..+...|.+.|+++++.+.+.......+-.++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLD-KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 346789999999999999865 2211 11 124778899999999999999999887732222222
Q ss_pred HH---HHHHHHHHHhcC-----------------------CCc-hhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 88 LE---HYGITVDLLATG-----------------------ETE-PYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 88 ~~---~~~~li~~~~~~-----------------------~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
.. .....+..+... .+. ..++..+...|...|++++|..+++.+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 21 122222222221 222 35788899999999999999999988655
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.18 E-value=0.027 Score=42.40 Aligned_cols=63 Identities=11% Similarity=-0.091 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHh----hcC-CCCc-HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIH----CSD-GKPN-NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~----~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.++|.|..+|...|++++|..++++... ..| -.|+ ..+++.+-..|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5899999999999999999999998632 022 3444 4589999999999999999999999877
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.17 E-value=0.021 Score=44.33 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=87.4
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcC--ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc-hHHHHHHHH
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHG--QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG-LIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~ 75 (145)
++|.+.++.+- +++-.+|+---.++.+.| +++++++.++.+.+ ... -|...|+.---...+.| .++++.+.+
T Consensus 90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~-~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE-ADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh-hcc-ccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 35666666552 346778988888888889 67999999999987 542 37778888887888888 788888888
Q ss_pred HHhhhhcCcCc-cHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCcc
Q 047113 76 DIMVHDFQLDL-NLEHYGITVDLLATGETE--PYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYYT 143 (145)
Q Consensus 76 ~~m~~~~~~~~-~~~~~~~li~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 143 (145)
+.+. +. .| |...|+....++.+..+. .... +-...+.++++.+.+++..+..|++.+.|.
T Consensus 168 ~~~I-~~--~p~n~saW~~r~~ll~~l~~~~~~~~~-----~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 168 DSLI-TR--NFSNYSSWHYRSCLLPQLHPQPDSGPQ-----GRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp HTTT-TT--TCCCHHHHHHHHHHHHHHSCCCCSSSC-----CSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred HHHH-HH--CCCCccHHHHHHHHHHhhccccccccc-----ccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 8888 33 33 444444444333221000 0000 000126679999999998888998876553
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.12 E-value=0.059 Score=41.85 Aligned_cols=119 Identities=7% Similarity=-0.028 Sum_probs=89.5
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCC----------hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc--h
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQ----------EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG--L 67 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~ 67 (145)
+|.+.++.+- +.+...|+.--.++.+.|+ ++++++.++.+.+ ..- -+...|+.---...+.+ +
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~p-K~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNP-KSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHccccc
Confidence 4555555442 2355678877777777777 9999999999876 442 26778888888888888 7
Q ss_pred HHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhcc-ChhHHHHHHccCCCCCCCCCCCc
Q 047113 68 IEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHH-NVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 68 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
++++.+.++++. + ..| .+..+|+.--.+..+.| .++++++.++++.+.+|.+.++|
T Consensus 125 ~~~el~~~~k~l-~--~d~----------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 125 WARELELCARFL-E--ADE----------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHH-H--HCT----------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHH-h--hcc----------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 799999999998 3 233 36677777777777888 88999999999999888776554
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.01 E-value=0.0055 Score=35.38 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=51.2
Q ss_pred HHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchh-hHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 59 LFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPY-VWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
...+.+.|+++.|...++... . ..|+ +.. .|..+-.+|...|++++|...|++..+..|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al-~--~~p~----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFL-Q--TEPV----------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-H--HCSS----------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHH-H--HCCC----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345678899999999999988 3 2332 445 6777788899999999999999999998887
Q ss_pred CCCCc
Q 047113 138 NDAYY 142 (145)
Q Consensus 138 ~~~~~ 142 (145)
++..+
T Consensus 68 ~~~~~ 72 (99)
T 2kc7_A 68 SPALQ 72 (99)
T ss_dssp STHHH
T ss_pred cHHHH
Confidence 76543
No 203
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.75 E-value=0.043 Score=32.90 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
|.=+..+-++.+-. .++.|+.....+.+.+|.+-+++..|.++|+-++.+.| +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 34467777777777 88999999999999999999999999999999984443 335567777653
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.65 E-value=0.19 Score=31.08 Aligned_cols=105 Identities=4% Similarity=-0.128 Sum_probs=63.0
Q ss_pred chHHHHhccCCC-CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHHHHHH
Q 047113 2 DDAERIFGGIID-KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGIKVFD 76 (145)
Q Consensus 2 ~~A~~~f~~m~~-~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~ 76 (145)
++|.+.|+..-+ .+.... |-..|...+.+++|.+.|+...+ . -+...+..+-..+.. .+++++|...|+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 356666664432 233333 55555566677778888887766 4 355666666666665 678888888888
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHh----ccChhHHHHHHccCCC
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRI----HHNVKIGELVAKDPFH 133 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 133 (145)
+.. +.| +...+..|-..|.. .+++++|...+++..+
T Consensus 86 ~Aa-~~g--------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 86 KAC-GLN--------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHH-HTT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHH-cCC--------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 877 444 22333344444444 5667777777665444
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.55 E-value=0.084 Score=38.96 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=60.9
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
.+..+|..+-..+...|++++|...+++... .+ |+...|..+-..+.-.|++++|.+.+++.. .+.|...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChHH
Confidence 4677888887777888999999999999988 55 888888888888899999999999999887 3566666554
No 206
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.39 E-value=0.084 Score=32.22 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhh---cCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhh---cCcCc-cH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHC---SDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHD---FQLDL-NL 88 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~ 88 (145)
.++..+-..+...|++++|...|++.... .+-.+ ....+..+-..+...|++++|...+++.... .+-.+ ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 47889999999999999999999986431 11111 1456778888899999999999999887732 12111 23
Q ss_pred HHHHHHHHHHhcC
Q 047113 89 EHYGITVDLLATG 101 (145)
Q Consensus 89 ~~~~~li~~~~~~ 101 (145)
..+..+...|...
T Consensus 130 ~~~~~la~~~~~~ 142 (164)
T 3ro3_A 130 RACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4455555555443
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.34 E-value=0.087 Score=30.70 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=44.3
Q ss_pred CchhhHHHHHHHHHHcCC---hHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 14 KNVVIWSGMIASHAIHGQ---EREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~---~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+|...|..+-.++...++ .++|..+|++... +.| +......+-..+.+.|++++|...|+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355666666666665544 6788888887765 345 45666777777788888888888888877
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.26 E-value=0.054 Score=40.65 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHh----hcC-CCCc-HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIH----CSD-GKPN-NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~----~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
.+++.|..+|...|++++|+.++.+... ..| -.|+ ..+++.+-..+...|++++|+.++++..
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5899999999999999999999997632 022 3444 4588999999999999999999998776
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.22 E-value=0.1 Score=37.86 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=85.0
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcC--ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch-HHHHHHHHH
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHG--QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL-IEEGIKVFD 76 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~ 76 (145)
++.++++.+- +++..+|+---..+.+.| ++++++.+++.+.+ .. +-|-..|+.---.....|. ++.+.+.+.
T Consensus 92 ~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~-~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 92 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE-AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4555565442 357778988888888888 48999999999977 44 2377788887777777787 588888888
Q ss_pred HhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCCCc
Q 047113 77 IMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDAYY 142 (145)
Q Consensus 77 ~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 142 (145)
.+. ... ..|...|+.....+.+..++... . -.+-...+.++++++.+.......|++.+.+
T Consensus 170 ~~I-~~~-p~N~SAW~~R~~ll~~l~~~~~~-~--~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 170 SLI-TRN-FSNYSSWHYRSCLLPQLHPQPDS-G--PQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHH-HHC-SCCHHHHHHHHHHHHHHSCCC---------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHH-HHC-CCCHHHHHHHHHHHHHhhhcccc-c--cccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 888 433 22445555444333222111000 0 0000011568899999999888999887655
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.12 E-value=0.48 Score=34.64 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=85.2
Q ss_pred hHHHHhccCC---CCchhhHHHHHHHHHHcCChH--------HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch----
Q 047113 3 DAERIFGGII---DKNVVIWSGMIASHAIHGQER--------EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL---- 67 (145)
Q Consensus 3 ~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---- 67 (145)
++.++++.+- ++|-..|+--.-...+.|+++ ++++.++.+.+ ... -|...|+..-....+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-VDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHhccccccc
Confidence 4556666543 346777877666666666666 88888888876 442 277778777777776664
Q ss_pred ---HHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC------------------------------------------
Q 047113 68 ---IEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG------------------------------------------ 101 (145)
Q Consensus 68 ---~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~------------------------------------------ 101 (145)
++++.+.++... . ..| |...|+.+--.+.+.
T Consensus 221 ~~~~~eELe~~~~aI-~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSI-H--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 566777776666 2 333 566665433322211
Q ss_pred -CCchhhHHHHHHHHHhccChhHHHHHHccCC-CCCC
Q 047113 102 -ETEPYVWGALLGACRIHHNVKIGELVAKDPF-HLDP 136 (145)
Q Consensus 102 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~ 136 (145)
.+....+..|.+.|...|+.++|.++++.+. +.+|
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 1455677888889999999999999999875 4555
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.10 E-value=0.19 Score=39.77 Aligned_cols=47 Identities=13% Similarity=-0.072 Sum_probs=31.1
Q ss_pred HHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 26 HAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
..+.|++++|.++.+.+ .+...|..+-..|.+.++++.|++.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45567777777665433 245667777777777777777777777665
No 212
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.07 E-value=0.2 Score=36.37 Aligned_cols=126 Identities=12% Similarity=0.027 Sum_probs=80.0
Q ss_pred chHHHHhccC---CCCchhhHHHHHHHHHHcCC-hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc------------
Q 047113 2 DDAERIFGGI---IDKNVVIWSGMIASHAIHGQ-EREALEAFYLVIHCSDGKPNNVTFLSILFACSYS------------ 65 (145)
Q Consensus 2 ~~A~~~f~~m---~~~~~~~~~~li~a~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~------------ 65 (145)
+++.++++.+ .++|-+.|+--.-...+.|+ ++++++.++.+.+ ... -|...|+..-......
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCS-CCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHhhhcccccccccc
Confidence 3566666655 34688899988888889998 5999999999987 553 3777887766665544
Q ss_pred --chHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcCCC-chhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 66 --GLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATGET-EPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 66 --~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
+.++++.+.+.... . ..| |...|+-+--.+.+... ...+ -.+.+.++++++.++++.+.+|++.
T Consensus 205 ~~~~~~eEle~~~~ai-~--~~P~d~SaW~Y~r~ll~~~~~~~~~~-------~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 205 PENVLLKELELVQNAF-F--TDPNDQSAWFYHRWLLGAGSGRCELS-------VEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp CHHHHHHHHHHHHHHH-H--HSTTCHHHHHHHHHHHHSSSCGGGCC-------HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHhccCccccc-------hHHHHHHHHHHHHHHHHHhhCcccc
Confidence 45666666666666 2 333 34444433332332200 0000 1122567899999999988888653
No 213
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.02 E-value=0.35 Score=34.58 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHcC--ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh----hcc---chHHHHHHHHHHhh
Q 047113 16 VVIWSGMIASHAIHG--QEREALEAFYLVIHCSDGKPNNVTFLSILFAC----SYS---GLIEEGIKVFDIMV 79 (145)
Q Consensus 16 ~~~~~~li~a~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~ 79 (145)
...||.--......| ++++++++++.+.. ..-+ +...|+.--... ... ++++++..+++.+.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL-DNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-HCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 345665555555555 66666666666554 2211 333444333333 222 45556666666555
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.82 E-value=0.22 Score=29.20 Aligned_cols=68 Identities=6% Similarity=-0.063 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhc-----CCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCcc
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCS-----DGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 87 (145)
..+-.|-..+.+.|+++.|...|+...+.. .-.+....+..+-.++.+.|+++.|...+++.. + +.|+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~--l~P~ 78 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-E--LDPE 78 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-h--cCCC
Confidence 345578888999999999999999865412 123456788999999999999999999999988 3 4554
No 215
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.59 E-value=0.14 Score=32.44 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHH
Q 047113 33 REALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDL 97 (145)
Q Consensus 33 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 97 (145)
=+..+-++.+-. .++.|+.......+++|.+-+++..|.++|+-++.+. .+...+|..+++-
T Consensus 70 wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 356666667667 8899999999999999999999999999999998443 4445667777653
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.51 Score=31.12 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVI 43 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~ 43 (145)
+...|..|-...-+.|+++-|.++|....
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 45677777777777777777777777654
No 217
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.97 E-value=0.076 Score=39.75 Aligned_cols=34 Identities=3% Similarity=-0.168 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHhcc---ChhHHHHHHccCCCCCCCC
Q 047113 105 PYVWGALLGACRIHH---NVKIGELVAKDPFHLDPKN 138 (145)
Q Consensus 105 ~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~ 138 (145)
...+..|-..|...| +.++|...|++..+..+..
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~ 212 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT 212 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH
Confidence 336666777777777 7888888887766655544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.93 E-value=0.35 Score=31.05 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc---hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHH
Q 047113 33 REALEAFYLVIHCSDGKPNNVTFLSILFACSYSG---LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWG 109 (145)
Q Consensus 33 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~ 109 (145)
..+.+-|.+... .|- ++..+--..--+.++.+ ++++|..+++... +.. .|+ . ....+=
T Consensus 15 ~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~-~p~-~--------------~rd~lY 75 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKG-SKE-E--------------QRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHS-CHH-H--------------HHHHHH
T ss_pred HHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-Ccc-c--------------hHHHHH
Confidence 344455554444 443 34333333333444444 6667777777776 322 121 0 011111
Q ss_pred HHHHHHHhccChhHHHHHHccCCCCCCCCC
Q 047113 110 ALLGACRIHHNVKIGELVAKDPFHLDPKND 139 (145)
Q Consensus 110 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 139 (145)
.|--+|.+.|++++|++.++.+.+++|++.
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 123455777777777777777777777654
No 219
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.85 E-value=0.34 Score=35.41 Aligned_cols=105 Identities=9% Similarity=-0.004 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHcC-ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc-c-hHHHHHHHHHHhhhhcCcCccHHHHH
Q 047113 16 VVIWSGMIASHAIHG-QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS-G-LIEEGIKVFDIMVHDFQLDLNLEHYG 92 (145)
Q Consensus 16 ~~~~~~li~a~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ 92 (145)
-..||.--..+...| ++++++.+++.+.. .. +-+...|+.---...+. + +.+++..+++.+. . ..
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L-~--~d------- 155 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL-L--PD------- 155 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT-S--SC-------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-H--hC-------
Confidence 334554444444444 35555555555543 22 11334444443333333 3 4444444444444 1 11
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHhccChh--------HHHHHHccCCCCCCCCCCC
Q 047113 93 ITVDLLATGETEPYVWGALLGACRIHHNVK--------IGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 93 ~li~~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~ 141 (145)
+.+..+|+.-.-...+.|.++ ++++.++++.+.+|.+.+.
T Consensus 156 ---------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 156 ---------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 336667776666666666666 8888888888877766544
No 220
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.74 E-value=0.54 Score=28.99 Aligned_cols=77 Identities=6% Similarity=-0.108 Sum_probs=60.6
Q ss_pred hHHHHhccCC-CCchhhHHHHHHHHHH----cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc----cchHHHHHH
Q 047113 3 DAERIFGGII-DKNVVIWSGMIASHAI----HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY----SGLIEEGIK 73 (145)
Q Consensus 3 ~A~~~f~~m~-~~~~~~~~~li~a~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~ 73 (145)
+|.+.|+..- ..+...+..|-..|.. .+++++|.+.|+...+ .| +...+..+-..+.. .+++++|..
T Consensus 43 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 43 KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 4566666442 3577788888888888 8999999999999887 54 66777777777777 899999999
Q ss_pred HHHHhhhhcCc
Q 047113 74 VFDIMVHDFQL 84 (145)
Q Consensus 74 ~~~~m~~~~~~ 84 (145)
.|++.. +.|.
T Consensus 119 ~~~~Aa-~~g~ 128 (138)
T 1klx_A 119 TFEKAC-RLGS 128 (138)
T ss_dssp HHHHHH-HTTC
T ss_pred HHHHHH-HCCC
Confidence 999998 6563
No 221
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.29 E-value=0.73 Score=33.94 Aligned_cols=81 Identities=7% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhh----hcCcCccHHHHHHH
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVH----DFQLDLNLEHYGIT 94 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~~l 94 (145)
...++.++.+.|++++|...+..... .. +.+...|-.+|.++.+.|+..+|.+.|+.+.. +.|++|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~-~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF-EH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34566778889999999999888755 22 34888999999999999999999999998763 45999988776655
Q ss_pred HHHHhcC
Q 047113 95 VDLLATG 101 (145)
Q Consensus 95 i~~~~~~ 101 (145)
-..+...
T Consensus 252 ~~il~~~ 258 (388)
T 2ff4_A 252 ERILRQQ 258 (388)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 5544443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.21 E-value=0.41 Score=34.22 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=64.7
Q ss_pred hHHHHhccCCC--C---chhhHHHHHHHHHHc-----CChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhcc-chHH
Q 047113 3 DAERIFGGIID--K---NVVIWSGMIASHAIH-----GQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYS-GLIE 69 (145)
Q Consensus 3 ~A~~~f~~m~~--~---~~~~~~~li~a~~~~-----g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~-~~~~ 69 (145)
+|+..+++.-+ | +-..|..|...|.+. |+.++|.++|++-.+ +.| +..++...-+.++.. |+.+
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34555554322 3 345899999999995 999999999999876 456 367777778888884 9999
Q ss_pred HHHHHHHHhhhhcCcC--ccHHHHHHH
Q 047113 70 EGIKVFDIMVHDFQLD--LNLEHYGIT 94 (145)
Q Consensus 70 ~a~~~~~~m~~~~~~~--~~~~~~~~l 94 (145)
.+.+.+++.. ..... |+....+.+
T Consensus 258 ~a~~~L~kAL-~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRAL-AIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHH-HCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCCChhHHHHH
Confidence 9999999998 55544 655544443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.08 E-value=0.3 Score=28.62 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 51 NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
+..-+-.+-..+-+.++++.|..-++.......-.++ ...+....+..|..+|.+.|++++|...+++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------CcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4445566777788899999999999887733211110 0123445678888999999999999999999
Q ss_pred CCCCCCCCCC
Q 047113 131 PFHLDPKNDA 140 (145)
Q Consensus 131 ~~~~~~~~~~ 140 (145)
..+..|+++.
T Consensus 72 al~l~P~~~~ 81 (104)
T 2v5f_A 72 LLELDPEHQR 81 (104)
T ss_dssp HHHHCTTCHH
T ss_pred HHhcCCCCHH
Confidence 9988887654
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.48 E-value=0.73 Score=34.00 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=75.3
Q ss_pred CchhhHHHHHHHHHHc--C---ChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhcc--------chHHHHHHHHHHhh
Q 047113 14 KNVVIWSGMIASHAIH--G---QEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYS--------GLIEEGIKVFDIMV 79 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~--g---~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~m~ 79 (145)
.+...|...+.+.... + ...+|..+|++..+ +.|+ ...|..+.-++... .......+.++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4677888888776542 2 35789999999866 4565 44555433333211 11112222222221
Q ss_pred hhcCcCccHHHHHHHHHHHh-cC---------------CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 80 HDFQLDLNLEHYGITVDLLA-TG---------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~-~~---------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
....-..+..+|.++...+. +. .|+...|..+-..+.-.|++++|.+.+++...++|..++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 11222445666666543332 12 777777777778888999999999999999999886553
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.45 E-value=0.89 Score=26.23 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.4
Q ss_pred chHHHHhccCC---CCchhhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 2 DDAERIFGGII---DKNVVIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 2 ~~A~~~f~~m~---~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
++|.++|++.. +.++..+..+-..+.+.|++++|...|..+.+
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777777553 34778888999999999999999999999976
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.34 E-value=4.1 Score=26.02 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=56.1
Q ss_pred hHHHHhccC-C--CCchhhHHHHHHHHHHcC---ChHHHHHHHHHhHhhcCCCC---cHHHHHHHHHHhhccchHHHHHH
Q 047113 3 DAERIFGGI-I--DKNVVIWSGMIASHAIHG---QEREALEAFYLVIHCSDGKP---NNVTFLSILFACSYSGLIEEGIK 73 (145)
Q Consensus 3 ~A~~~f~~m-~--~~~~~~~~~li~a~~~~g---~~~~A~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~ 73 (145)
++++-|.+. . .++..+.-.+-.++++.+ +.+++..+|++..+ .+ .| ....|+.-+ ++.+.|+++.|.+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv-~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAV-GNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHH-HHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHH-HHHHccCHHHHHH
Confidence 344445433 1 346667677777888888 67799999999877 44 34 223455544 5699999999999
Q ss_pred HHHHhhhhcCcCccH
Q 047113 74 VFDIMVHDFQLDLNL 88 (145)
Q Consensus 74 ~~~~m~~~~~~~~~~ 88 (145)
.++.+. .++|+-
T Consensus 93 y~~~lL---~ieP~n 104 (152)
T 1pc2_A 93 YVRGLL---QTEPQN 104 (152)
T ss_dssp HHHHHH---HHCTTC
T ss_pred HHHHHH---hcCCCC
Confidence 999999 467753
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=87.17 E-value=8.1 Score=29.24 Aligned_cols=30 Identities=13% Similarity=-0.088 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
+...|-..+.-+.+.|++++|..+|.+...
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666677777777777776655
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.01 E-value=9.2 Score=30.07 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+...|..|-..+.+.|+++.|.++|..+.. |..+...+...|+.+....+-+...
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 456888888888888888888888887754 2334444445666665555544444
No 229
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.75 E-value=4 Score=24.43 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=35.9
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
|++.+..+.+.||.|.+++.-|.++|+..+.+.|-+ ..+|..++
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~l 86 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVI 86 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHH
Confidence 788899999999999999999999999987634433 44677666
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.86 E-value=5.7 Score=24.52 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc---cchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhh
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSY---SGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYV 107 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~ 107 (145)
....+.+-|..... .|-......|+-.. +..+ ..+..++..+++.+. +.+ .|. ...-
T Consensus 16 ~l~~~~~~y~~e~~-~~~~s~~~~F~yAw-~Lv~S~~~~d~~~GI~lLe~l~-~~~-~p~----------------~~Rd 75 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AGSVSKSTQFEYAW-CLVRTRYNDDIRKGIVLLEELL-PKG-SKE----------------EQRD 75 (126)
T ss_dssp HHHHHHHHHHHHHH-HSCCCHHHHHHHHH-HHTTSSSHHHHHHHHHHHHHHT-TTS-CHH----------------HHHH
T ss_pred HHHHHHHHHHHHhc-cCCCcHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHH-hcC-Ccc----------------hHHH
Confidence 34455555655544 44432333444332 3333 335566889998888 433 121 1111
Q ss_pred HH-HHHHHHHhccChhHHHHHHccCCCCCCCCCCC
Q 047113 108 WG-ALLGACRIHHNVKIGELVAKDPFHLDPKNDAY 141 (145)
Q Consensus 108 ~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 141 (145)
+. .|--|+.+.|++++|++.++.+.+.+|++...
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 11 23467899999999999999999999977543
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=82.87 E-value=13 Score=28.04 Aligned_cols=111 Identities=6% Similarity=-0.009 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHH--HHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFL--SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
..|-..+...-+.+..+.|..+|..... .+ ++...|. +.+.... .++.+.|..+|+...+..+-. ...|...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~--~~~~~~y 360 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDS--TLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCC--HHHHHHH
Confidence 4577777777778889999999988722 22 2333332 3333322 236889999999888443222 3334444
Q ss_pred HHHHhcC-------------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 95 VDLLATG-------------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 95 i~~~~~~-------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
++...+. ......|...+.-=...|+.+.+..++++...
T Consensus 361 id~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4432222 22345677777655677888888887776553
No 232
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=82.11 E-value=1.7 Score=25.40 Aligned_cols=40 Identities=5% Similarity=-0.085 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHH
Q 047113 30 GQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKV 74 (145)
Q Consensus 30 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 74 (145)
.+.++|.++++.+.. .| ...|...+++..+.|+...|..+
T Consensus 51 t~~~~ar~Lld~L~~-rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLET-RG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTT-SC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHH-cC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 467777788877765 33 35667777777666665555433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.04 E-value=3.7 Score=26.02 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhH-HHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVW-GALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
...+..++..+++.+. +.+ |. +..-+ =.|--|+.+.|++++|++..+.+.+.+|++..
T Consensus 54 ~~~di~~GI~LLe~l~-~~~--~~----------------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 54 DVNDERLGVKILTDIY-KEA--ES----------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SHHHHHHHHHHHHHHH-HHC--CS----------------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHH-hcC--cc----------------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3456678888888887 422 21 11111 12345788999999999999999999887643
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.45 E-value=12 Score=26.40 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=76.1
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhh-hcCcCccHHHHHHHHHHHhcC
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVH-DFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~~li~~~~~~ 101 (145)
....+.|..++|++....-.+ . .| |...=..++..+|-.|+|++|..=++.... +-...|...+|..+|.+=...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR-~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK-A--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH-T--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 345678999999998887654 2 45 777888999999999999999988887772 223455566777777543322
Q ss_pred --------CC-----chhhHHHHHHHHHh--ccChhHHHHHHccCCCCCCC
Q 047113 102 --------ET-----EPYVWGALLGACRI--HHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 102 --------~p-----~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~ 137 (145)
.| ...-...++.+... .|+.++|.++-..+.+.-|.
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11 11233455566644 59999999988887665443
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.13 E-value=2.6 Score=31.00 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHh----hcCCCCcHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIH----CSDGKPNNVTF 55 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~ 55 (145)
+...|..+|.++.+.|+..+|++.|+.+.. +.|+.|...+-
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 667899999999999999999999998643 47999987763
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.15 E-value=4.8 Score=25.16 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCCCCC
Q 047113 64 YSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPKNDA 140 (145)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 140 (145)
...+...|..+++.+. +.+ |. .....+=.|--|+.+.|++++|++..+.+.+.+|++..
T Consensus 55 ~~~d~~~GI~LLe~l~-~~~--~~---------------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 55 DVNDERLGVKILTDIY-KEA--ES---------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHHH-HHC--GG---------------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CHHHHHHHHHHHHHHH-hcC--cc---------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3446778888888887 433 21 01122223456888999999999999999999997653
No 237
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.13 E-value=8.1 Score=23.74 Aligned_cols=101 Identities=7% Similarity=-0.007 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc--hHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG--LIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-+.+|.-|...|+.++|.++++++.. -.+. .......+..+.-+.+ ..+....++..+. ..|+-+.......+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~-~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-CccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCHHHHHHHHH
Confidence 356789999999999999999999864 2222 2334455555665543 3567888888887 677665544433333
Q ss_pred HHHhcC------CCchhhH-HHHHHHHHhccCh
Q 047113 96 DLLATG------ETEPYVW-GALLGACRIHHNV 121 (145)
Q Consensus 96 ~~~~~~------~p~~~~~-~~li~~~~~~g~~ 121 (145)
..+... .|....+ ..++.-+...|-+
T Consensus 86 ~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l 118 (129)
T 2nsz_A 86 RIYNEIPDINLDVPHSYSVLERFVEECFQAGII 118 (129)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCS
T ss_pred HHHhhChHhhcCccchHHHHHHHHHHHHHCCCC
Confidence 333332 6666543 3334444444443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=79.82 E-value=9.5 Score=24.37 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD 85 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 85 (145)
+..-.+..++.....|+-|+-.+++..+. .+-+|++...--+-.+|.+-|+...+.+++.+.. +.|+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-HhhhH
Confidence 34446677777788888888888777742 2345667777777778888888888888887777 66654
No 239
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=77.35 E-value=11 Score=23.86 Aligned_cols=102 Identities=6% Similarity=-0.027 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhcc--chHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYS--GLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-+.+|.-|...|+.++|.++++++.. -.+. .......+..+.-+. ...+....++..+. ..|+-+.......+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~-~~~~is~~q~~~Gf~ 87 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-Ccch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCHHHHHHHHH
Confidence 456889999999999999999999864 2222 233445555566553 33567888888887 667665544433333
Q ss_pred HHHhcC------CCchhhH-HHHHHHHHhccChh
Q 047113 96 DLLATG------ETEPYVW-GALLGACRIHHNVK 122 (145)
Q Consensus 96 ~~~~~~------~p~~~~~-~~li~~~~~~g~~~ 122 (145)
..+... .|+...+ ..++.-+...|-+.
T Consensus 88 ~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 88 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhChHhccCccchHHHHHHHHHHHHHCCCCC
Confidence 333332 6666543 33444444445443
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.09 E-value=12 Score=24.21 Aligned_cols=116 Identities=9% Similarity=-0.074 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHH-
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNN-------VTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLE- 89 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~- 89 (145)
.+-.-+..+..+|.++.|.-+.+.+..-.+-.|+. .++..+-++.-..+++.+|...|++.......-+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556778889999999998888754312233442 3667778888999999999999999764333322211
Q ss_pred HHHHHHH--HHhcC---CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 90 HYGITVD--LLATG---ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 90 ~~~~li~--~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+++++-. .+... ..|...-=-+-.+|.+.|+.++|..+.+.+..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 01000 22333322355777889999999999887644
No 241
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=76.59 E-value=11 Score=27.31 Aligned_cols=105 Identities=11% Similarity=-0.034 Sum_probs=60.4
Q ss_pred HHHcCChHHHHHHHHHhHhhcC-CC-----CcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 26 HAIHGQEREALEAFYLVIHCSD-GK-----PNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~-~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
+.+.|++++|+..|+.... .- +. -+..-..-+|..|. .+-.|..+ ++. +..+..+...-+.=+.+|.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~-~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~-Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIY-RITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELE-RRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHH-HHTCCTTCHHHHHHHHHHG
T ss_pred HHhcCCHHHHHHHHHHHHH-HhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHH-HHhcCcccHHHHHHHHHHh
Confidence 3579999999999998754 11 00 01112223333322 22222222 222 3333334445566666666
Q ss_pred cC-----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCCC
Q 047113 100 TG-----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 100 ~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 137 (145)
.. ..-.-+..+.|....+.+++.-|..+.+++.+..|+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 55 223346777788888888988888888888876663
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=76.44 E-value=6.9 Score=27.96 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=70.1
Q ss_pred hccCCCCc--hhhHHHHHHHH-HHc--CC------hHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHhhc-----cchH
Q 047113 8 FGGIIDKN--VVIWSGMIASH-AIH--GQ------EREALEAFYLVIHCSDGKPN---NVTFLSILFACSY-----SGLI 68 (145)
Q Consensus 8 f~~m~~~~--~~~~~~li~a~-~~~--g~------~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~-----~~~~ 68 (145)
+.+..+.| ...|..++.+- +.. |+ ..+|...+++..+ +.|+ ...|..+-..|.+ .|+.
T Consensus 144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence 34444333 34688777644 442 33 4566677776655 4565 5688889888998 5999
Q ss_pred HHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhc-cChhHHHHHHccCCCCCCC
Q 047113 69 EEGIKVFDIMVHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIH-HNVKIGELVAKDPFHLDPK 137 (145)
Q Consensus 69 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~ 137 (145)
++|++.|++.. . +.|+ -+..++...-..+++. |+.+++.+.+++.....|.
T Consensus 221 ekA~~~ferAL-~--LnP~---------------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 221 EKAHTAFEHLT-R--YCSA---------------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHH-H--HCCT---------------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHH-H--hCCC---------------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999998 3 3332 0133444455666663 7777777777776665554
No 243
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=75.35 E-value=4.4 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHH
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEG 71 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 71 (145)
....++|..+++.+.. .....|...+++..+.+....+
T Consensus 49 ~t~~~kar~Lld~l~~-----kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILK-----KDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHcCHHHHH
Confidence 4566677777766654 2345666666666665554333
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.91 E-value=32 Score=27.86 Aligned_cols=31 Identities=6% Similarity=-0.101 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 102 ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 102 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
+-+..+|-.|..+|...|+++.|+-.+.-+.
T Consensus 368 PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 368 LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4467899999999999999999999988764
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.64 E-value=0.32 Score=37.62 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=87.3
Q ss_pred chhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 15 NVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 15 ~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
....|+.|-.|.-+.|+..+|++.|=.- -|...|.-++.++.+.|.++.-...+.... +..-+| ..=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~--~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARES--YVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCST--TTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhccc--ccHHHH
Confidence 4567999999999999999998776321 267788999999999999999888888776 433344 344689
Q ss_pred HHHHhcC-----------CCchhhHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 95 VDLLATG-----------ETEPYVWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 95 i~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
+-+|++. .|+..-...+-+-|...|.++.|.-+|..+..
T Consensus 123 i~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN 172 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN 172 (624)
T ss_dssp HHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC
T ss_pred HHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc
Confidence 9999988 67777777888999999999999888887665
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.62 E-value=12 Score=23.70 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=36.0
Q ss_pred CchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 047113 14 KNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSIL 59 (145)
Q Consensus 14 ~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 59 (145)
|++.+..+.+.||-|.+|+.-|.++|+-.+.+.| +....|.-++
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~l 129 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 129 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHH
Confidence 7788899999999999999999999999876343 3355677666
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.70 E-value=14 Score=22.15 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHH
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHY 91 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 91 (145)
......|++++|..+.+.+. .||...|.++- -.+.|.-+++..=+.++. ..| +|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la-~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESRLNRLA-RSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHT-TCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHH-hCC-CHHHHHH
Confidence 34556777888777776543 47777776664 345555555555555555 333 4444443
No 248
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=71.58 E-value=27 Score=25.52 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHhhccc-hHHHHHHHHHHhhhhcCcCcc
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN----NVTFLSILFACSYSG-LIEEGIKVFDIMVHDFQLDLN 87 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~ 87 (145)
.-..+|.=|...|+.++|..+++++.. |+ ...+..+..+.-+.. .-+.+-.++..+. ..++-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~-~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLK-QEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HCCCCCH
Confidence 456889999999999999999999854 42 223333333433322 2345667777776 5455433
No 249
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=70.61 E-value=18 Score=23.20 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch--HHHHHHHHHHhhhhcCcCccHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL--IEEGIKVFDIMVHDFQLDLNLEH 90 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 90 (145)
.-..+|.-|...|+.++|...++++.. ..+.|..+ ..+|......++ -+.+-.++..+. . ++-+....
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~-p~~~~~~V--~~~I~~aldrk~~ere~~s~LL~~L~-~-~~ls~~~i 81 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKSGVP--VLAVSLALEGKASHREMTSKLLSDLC-G-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-SGGGGHHH--HHHHHHHHTSCHHHHHHHHHHHHHHB-T-TTBCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-cccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHH-H-CCCCHHHH
Confidence 356789999999999999999999865 33333222 233333333333 445677777775 4 55444333
No 250
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.95 E-value=16 Score=22.22 Aligned_cols=61 Identities=3% Similarity=-0.154 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHcCC---hHHH----HHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 18 IWSGMIASHAIHGQ---EREA----LEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 18 ~~~~li~a~~~~g~---~~~A----~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+++.++.+|...-. .+++ .-+|+.+.. ..+.|++..--.-|-.+...++|+.|..++..+.
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788887754321 2333 346777777 7888887766677777788999999999999888
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.80 E-value=12 Score=27.73 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKP--NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++..+-.-|.+.|++++|.++|.+++. .-..+ -...+-.++..+...+++..+.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~-~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLS-KAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHH-HHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 466788889999999999999999976 43333 45678888999999999999998888876
No 252
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=69.56 E-value=19 Score=25.86 Aligned_cols=64 Identities=6% Similarity=-0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc-cchHHHHHHHHHHhhhhcCcC
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY-SGLIEEGIKVFDIMVHDFQLD 85 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~ 85 (145)
-+.+|.-|...|+.++|.++++++.. -.+.| ......+..+.-+ ....+....++..+. +.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~-~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS-PSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLL-CAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC-GGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-cccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HCCCC
Confidence 46788899999999999999998854 22222 2233333333333 223445666666666 44443
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.45 E-value=13 Score=22.25 Aligned_cols=59 Identities=19% Similarity=0.024 Sum_probs=35.0
Q ss_pred HHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHH
Q 047113 24 ASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHY 91 (145)
Q Consensus 24 ~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 91 (145)
......|++++|..+.+.+. .||...|..+- -.+.|.-+++..=+.++. ..| +|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la-~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRLAGLG-GSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHH-TCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHH-hCC-CHHHHHH
Confidence 34556777888777766543 57777776664 345666666666555555 333 4444444
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=62.30 E-value=28 Score=22.36 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=45.7
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHH
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVD 96 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 96 (145)
.+++++|.++|+.+.. ..-+. ...|..--.--.+.|+++.|..++.... -.+-.| .....+.|.
T Consensus 73 i~D~d~aR~vy~~a~~-~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARA-NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHH-HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCc-HHHHHHHHH
Confidence 4799999999999977 54444 6666666666688999999999999998 333333 344444443
No 255
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.17 E-value=40 Score=24.01 Aligned_cols=103 Identities=7% Similarity=-0.003 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc--hHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG--LIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-+.+|.-|...|+.++|.++++++.. -.+. .......+..+.-+.+ ..+....++..+. ..|+-+.......+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~-~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLW-KSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH-HHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC-Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH
Confidence 356899999999999999999999864 2222 2334445555555543 3567888888888 667666544444443
Q ss_pred HHHhcC------CCchhh-HHHHHHHHHhccChhH
Q 047113 96 DLLATG------ETEPYV-WGALLGACRIHHNVKI 123 (145)
Q Consensus 96 ~~~~~~------~p~~~~-~~~li~~~~~~g~~~~ 123 (145)
..+... .|+... ...++.-+...|-+..
T Consensus 245 ~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~ 279 (307)
T 2zu6_B 245 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISK 279 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCH
Confidence 333333 666654 3444555555555543
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.70 E-value=50 Score=24.09 Aligned_cols=103 Identities=7% Similarity=-0.021 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccc--hHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSG--LIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-+.+|.=|...|+.++|.++++++.. -.+.+ ......+..+.-+.+ ..+....++..+. ..|+-+.......+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~-~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-CcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH
Confidence 368899999999999999999999865 32222 333455555555433 4566888888888 677776655555555
Q ss_pred HHHhcC------CCchhhH-HHHHHHHHhccChhH
Q 047113 96 DLLATG------ETEPYVW-GALLGACRIHHNVKI 123 (145)
Q Consensus 96 ~~~~~~------~p~~~~~-~~li~~~~~~g~~~~ 123 (145)
..+... .|....+ ..++.-+...|-+..
T Consensus 296 ~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~ 330 (358)
T 3eiq_C 296 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISK 330 (358)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCH
Confidence 544444 6666543 344455555555544
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=58.04 E-value=18 Score=29.29 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=44.3
Q ss_pred HHHcCChHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 26 HAIHGQEREALEAFYLVIHCSDGKPN-NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
+..+|+++.|+++=++... ..|+ -.+|-.|..+|...|+|+.|.-.+..+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4468999999999998754 5675 6799999999999999999999998885
No 258
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=57.30 E-value=7 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=21.3
Q ss_pred HHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 109 GALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 109 ~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
-..+..|.+.|.+++|.++++++..-.+
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~ 148 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPN 148 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCC
Confidence 4567899999999999999999766443
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.70 E-value=57 Score=23.80 Aligned_cols=78 Identities=13% Similarity=-0.031 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch--HHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL--IEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-..+|.-|...|+.++|...++++.. ....| .....+|......++ -+.+-.++..+. . ++-+.......+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~-p~~~~--~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~-~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLC-G-TVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC-CGGGG--GHHHHHHHHHTTSCHHHHHHHHHHHHTTT-T-TSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC-chhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHH-h-CCCCHHHHHHHHH
Confidence 467889999999999999999999865 33322 333444444444443 345677777776 3 5554444444444
Q ss_pred HHHhc
Q 047113 96 DLLAT 100 (145)
Q Consensus 96 ~~~~~ 100 (145)
..+..
T Consensus 131 ~lle~ 135 (358)
T 3eiq_C 131 KLLKD 135 (358)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 43333
No 260
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=54.63 E-value=34 Score=23.29 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhHhhcCCCCcHH-H-----HHHHHHHhhccchHHHHHHHHHHhhh
Q 047113 32 EREALEAFYLVIHCSDGKPNNV-T-----FLSILFACSYSGLIEEGIKVFDIMVH 80 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p~~~-~-----~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (145)
.+.|+.+|+.+.++..+..+.. . =-..+-.|.+.|.+++|.+++++..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 5689999999987454322220 1 12345568999999999999998873
No 261
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.99 E-value=15 Score=19.34 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=12.1
Q ss_pred hccchHHHHHHHHHHhhhhcCcCc
Q 047113 63 SYSGLIEEGIKVFDIMVHDFQLDL 86 (145)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~~~~~~ 86 (145)
+..|+++.|...+-.|. ..+..|
T Consensus 34 a~~gdvd~aI~~LL~m~-~~~~~~ 56 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMG-EEPSGP 56 (59)
T ss_dssp TTTTCHHHHHHHHHHSS-CCCCSC
T ss_pred HcCCCHHHHHHHHHcCc-CCCCCC
Confidence 44555555555555555 444444
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.14 E-value=24 Score=22.47 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=54.8
Q ss_pred chHHHHhccCCC--Cch---hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~---~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
+++.+.|...+. .|. ..|-..++.+ +++..+|..|.. .|+-. -+.-|-.--..+-..|++.+|.++|
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 124 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN-HGIGTLSSPLYIAWAGHLEAQGELQHASAVL 124 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT-TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456666655543 343 3454444432 458899999988 77665 4557777777788899999999999
Q ss_pred HHhhhhcCcCcc
Q 047113 76 DIMVHDFQLDLN 87 (145)
Q Consensus 76 ~~m~~~~~~~~~ 87 (145)
..=. +.+-+|-
T Consensus 125 ~~Gi-~~~A~P~ 135 (152)
T 4a1g_A 125 QRGI-QNQAEPR 135 (152)
T ss_dssp HHHH-HTTCBSH
T ss_pred HHHH-HcCCccH
Confidence 9988 6677774
No 263
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.32 E-value=13 Score=19.51 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcH
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNN 52 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~ 52 (145)
.-+++.|...|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 348999999999988624455554
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.45 E-value=66 Score=22.96 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYL 41 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~ 41 (145)
.|.++..-|.+.+++++|++++.+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 577777788888888888877654
No 265
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=49.53 E-value=38 Score=19.92 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=39.7
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch--HHHHHHHHHHhhhhcCcCccHHHHHHH
Q 047113 34 EALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL--IEEGIKVFDIMVHDFQLDLNLEHYGIT 94 (145)
Q Consensus 34 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~~l 94 (145)
.|..+-++... .|+.|+.....-++..|...+. -+-+.+....-.+..|..|+..+.+.+
T Consensus 27 sae~L~eEfde-fGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQI-FGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 46667777777 8999988888888888877664 112333333322356888887776654
No 266
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=49.02 E-value=29 Score=27.12 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=15.6
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 54 TFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
----++..|++.|..+.|..+++.+.
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33455556666666666666666665
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.41 E-value=75 Score=23.01 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYL 41 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~ 41 (145)
.|.++..-|.+.+++++|++++.+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 467788888888888888886654
No 268
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=48.12 E-value=6.8 Score=30.54 Aligned_cols=109 Identities=9% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH------------Hhhh
Q 047113 13 DKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD------------IMVH 80 (145)
Q Consensus 13 ~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~------------~m~~ 80 (145)
..|...|...|.+..+.|.+++-...+.-.++ . ..+...=+.++-+|++.+...+.++++. +.-
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf- 155 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY- 155 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHH-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHH-
Confidence 35788899999999999999998887754433 3 2344455788999999887643222211 111
Q ss_pred hcCcCccHHHHHHHHHHHhcC-------------------CCchhhHHHHHHHHHhccChhHHH
Q 047113 81 DFQLDLNLEHYGITVDLLATG-------------------ETEPYVWGALLGACRIHHNVKIGE 125 (145)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~-------------------~p~~~~~~~li~~~~~~g~~~~a~ 125 (145)
+.|.---....-+-|+-|+|. -.+..||.-+-.+|...+.+.-|.
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 111111111111111112222 447789999999999999987654
No 269
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.32 E-value=74 Score=22.61 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch--HHHHHHHHHHhh
Q 047113 19 WSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL--IEEGIKVFDIMV 79 (145)
Q Consensus 19 ~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~ 79 (145)
...+|.-|...|+.++|...++++.. ..+.|..+. .+|......++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~-p~~~~~~v~--~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKSGVPV--LAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC-GGGGGGHHH--HHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-cchHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999865 444433332 33333333333 344666666665
No 270
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.40 E-value=67 Score=21.89 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhcCcCcc-HHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCC
Q 047113 68 IEEGIKVFDIMVHDFQLDLN-LEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLD 135 (145)
Q Consensus 68 ~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 135 (145)
.+.|..+|+.+.....+... ...-..||. -..+..|.+.|.+++|.+++++...-.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk------------~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVK------------EAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHH------------HHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 35677777777633332222 112222222 346788999999999999999977643
No 271
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=45.32 E-value=39 Score=18.97 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHhccCCC--CchhhHHHHHHHHHHcCChHHHHHHHHHh
Q 047113 6 RIFGGIID--KNVVIWSGMIASHAIHGQEREALEAFYLV 42 (145)
Q Consensus 6 ~~f~~m~~--~~~~~~~~li~a~~~~g~~~~A~~~~~~m 42 (145)
+++.+++. |++.||+-+....-+..-..+++.+-+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555543 57777777666655555555555554443
No 272
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=42.26 E-value=23 Score=19.98 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLI 68 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 68 (145)
-.++|...|.+|..+.++.|+. ||.-.|...+.-..|
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCcc
Confidence 3678899999988768877764 455555555554443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=41.84 E-value=55 Score=19.56 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHH
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITV 95 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 95 (145)
.-++++|.-+-+=+.. .+- ....--+-+......|+|++|..+.+.+. .||...|-+|-
T Consensus 20 ~H~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc 78 (116)
T 2p58_C 20 NHYHEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC 78 (116)
T ss_dssp TTCHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH
Confidence 4478888888777766 333 22222344556678999999998877665 56555555443
No 274
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=40.08 E-value=29 Score=20.01 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=16.9
Q ss_pred cCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc
Q 047113 29 HGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY 64 (145)
Q Consensus 29 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 64 (145)
.-..++|..+++.+.. .| ...|...+.+..+
T Consensus 48 ~t~~~k~~~Lld~L~~-rG----~~Af~~F~~aL~~ 78 (100)
T 3crd_A 48 TTGLRKTMLLLDILPS-RG----PKAFDTFLDSLQE 78 (100)
T ss_dssp SSSHHHHHHHHHHTTT-SC----SSCHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHH-HC----HHHHHHHHHHHHh
Confidence 4456667777766654 33 2345555555543
No 275
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=37.92 E-value=28 Score=18.99 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchH
Q 047113 31 QEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLI 68 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 68 (145)
..++|...|.+|..+.++.|+. +|.-.+..+..-..|
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCccc
Confidence 4689999999998768777654 566666666554444
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.24 E-value=34 Score=19.89 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHh
Q 047113 17 VIWSGMIASHAIHGQEREALEAFYLV 42 (145)
Q Consensus 17 ~~~~~li~a~~~~g~~~~A~~~~~~m 42 (145)
+.+.---.++.+.|++++|+++....
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34566678899999999998877653
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=35.93 E-value=86 Score=20.12 Aligned_cols=104 Identities=10% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCCchhhHHHHHHHHHHcCCh------HHHHHHHHHhHhhcCCCCcHH-HHHHHHHHh------hccchHHHHHHHHHHh
Q 047113 12 IDKNVVIWSGMIASHAIHGQE------REALEAFYLVIHCSDGKPNNV-TFLSILFAC------SYSGLIEEGIKVFDIM 78 (145)
Q Consensus 12 ~~~~~~~~~~li~a~~~~g~~------~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~------~~~~~~~~a~~~~~~m 78 (145)
.+.|..+|=..+...-+.|++ ++..++|.+.. ..++|+.. .|-.-+... -..++.++|.++|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi--a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI--EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH--HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH--HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455788898889888888999 89999999765 35666531 111111111 1225566666666666
Q ss_pred hhhcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 79 VHDFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
. +. ++.- ...|...-+==.++|++.+|+.++.+...+.|
T Consensus 87 ~----------------~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 R----------------AN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H----------------HH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H----------------HH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5 32 1111 23333333333668888888888887666555
No 278
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=35.41 E-value=77 Score=19.41 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=27.1
Q ss_pred HHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC-CCch
Q 047113 57 SILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG-ETEP 105 (145)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-~p~~ 105 (145)
-.|...+..++.+-|+++++.+. ..| +...|.+.+-.|... +||+
T Consensus 37 DAietAa~S~d~elaEeLL~yFV-e~g---~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFL-QEE---KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHT-TSC---SHHHHHHHHHHHTTCSCTTH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HcC---chHHHHHHHHHHHhccChHH
Confidence 34566677777777888777777 434 444455555444444 4444
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.64 E-value=1.4e+02 Score=22.07 Aligned_cols=58 Identities=12% Similarity=-0.136 Sum_probs=45.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCc-----HHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPN-----NVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
-|...|...|++.+|..++..+.++.. +.| ...+..-+..|...+++..+...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 578889999999999999999876222 222 3456777788889999999998888776
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.18 E-value=1.8e+02 Score=23.21 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=50.4
Q ss_pred HHHHcCChHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHhhcc----------------chHHHHHHHHHHhhhhc----
Q 047113 25 SHAIHGQEREALEAFYLVIHCSDGKPN--NVTFLSILFACSYS----------------GLIEEGIKVFDIMVHDF---- 82 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~----------------~~~~~a~~~~~~m~~~~---- 82 (145)
-+-..|++++|..+|+...+ .| ....|.++.-.... +-...|.++.+... ..
T Consensus 452 ~ae~~G~~~dAi~LY~La~~-----~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~-~~~~~~ 525 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEE-----YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYF-DNAGIS 525 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHh-cCchhh
Confidence 34578999999999987543 33 22445555433321 12234444444433 21
Q ss_pred -CcCc-cHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 83 -QLDL-NLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 83 -~~~~-~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
.+.+ +..|+..|++. .-+..+...|+++.|++.++++.
T Consensus 526 ~~~~~~~~~t~~lLl~l------------~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 526 RQIHVKNKEICMLLLNI------------SSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp TTSCHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHTS
T ss_pred hhccHHHHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHhCC
Confidence 1222 34455555531 11233478899999999999865
No 281
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.13 E-value=41 Score=22.17 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=34.0
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHhhc--cchHHHHHHHHHHhh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNN-------VTFLSILFACSY--SGLIEEGIKVFDIMV 79 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~m~ 79 (145)
.+...++.|+.+....+++.+.. .|..++. .-.+.+..++.. .|+.+-+..+++.-.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 45555678888877777776666 6655443 333444444432 277777777666544
No 282
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.66 E-value=37 Score=17.87 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHh-hccch
Q 047113 32 EREALEAFYLVIHCSDGKPNNVTFLSILFAC-SYSGL 67 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~-~~~~~ 67 (145)
.++|.+.|.+|.++.++.|+ -||.-.|..+ ++-..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDST-WSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCCCc
Confidence 35777777777664665544 3556666666 44443
No 283
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=33.55 E-value=1.4e+02 Score=22.01 Aligned_cols=66 Identities=11% Similarity=-0.041 Sum_probs=47.5
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHH
Q 047113 4 AERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 4 A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
++++++.|+..-...-..+..+.-..|..++|...|..+.. . ...|..++....+..+-+.|.++-
T Consensus 408 ~~~~l~~l~~~~~~d~~~i~~~~~~~~~~~~a~~~~~~~~~-----~-~~w~~~~~~~l~~~~~~~~~~~~~ 473 (477)
T 2vgq_A 408 VVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFNTLQR-----R-PGWVEYFIAALRGCELVDLADEVA 473 (477)
T ss_dssp HHHHGGGCTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHTT-----S-TTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhccCccCcHHHHHHHHHHHhccccHHHHHHHHHHHhh-----C-CChHHHHHHHHHHcCcHHHHHHHH
Confidence 67777766655555566777777888899999999988754 2 567777777777777766665543
No 284
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.90 E-value=89 Score=18.74 Aligned_cols=47 Identities=17% Similarity=0.059 Sum_probs=27.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLI 68 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 68 (145)
.++..+...+.+-.|.++++.+++ .+-..+..|.=--|+...+.|.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRR-RGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCCE
Confidence 345555555666677777777766 55444555544455555555544
No 285
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=30.74 E-value=37 Score=23.71 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhccChhHHHHHHccCCC
Q 047113 107 VWGALLGACRIHHNVKIGELVAKDPFH 133 (145)
Q Consensus 107 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 133 (145)
--|.+++-|-..|+++.|+++++++..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 357889999999999999999998655
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.65 E-value=1.1e+02 Score=19.27 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCc-cHHHHHHHHHHHhcC
Q 047113 48 GKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDL-NLEHYGITVDLLATG 101 (145)
Q Consensus 48 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~ 101 (145)
.+-|..-...-|.---.. +....+|..|. ..|+-- -..-|-.....+...
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~ 114 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLY-NHGIGTLSSPLYIAWAGHLEAQ 114 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHH-TTTTTTTBHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHc
Confidence 455655444444433333 33688888887 666543 344444554444443
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.09 E-value=1.4e+02 Score=19.96 Aligned_cols=83 Identities=7% Similarity=0.044 Sum_probs=58.4
Q ss_pred chHHHHhccCCC--Cch---hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~---~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
+++.+.|...+. .|. ..|-..+..+ ..+...++..+|..|.. .|+-. -+.-|-..-..+-..|++.+|.++|
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555655543 343 3566666655 23336699999999988 77655 4567777777788899999999999
Q ss_pred HHhhhhcCcCcc
Q 047113 76 DIMVHDFQLDLN 87 (145)
Q Consensus 76 ~~m~~~~~~~~~ 87 (145)
+.=. +.+-+|-
T Consensus 139 ~~GI-~~~A~P~ 149 (202)
T 3esl_A 139 ELGA-ENNCRPY 149 (202)
T ss_dssp HHHH-HTTCBSH
T ss_pred HHHH-HcCCccH
Confidence 9888 6666774
No 288
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=27.92 E-value=38 Score=15.47 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=16.8
Q ss_pred HHHHHhccChhHHHHHHccCC
Q 047113 112 LGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 112 i~~~~~~g~~~~a~~~~~~~~ 132 (145)
+.-|...|.+++|..+-..++
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 567888999999998866655
No 289
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=27.25 E-value=61 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHhHhhcCCCC---cHHHHHHHHHHhhccc
Q 047113 31 QEREALEAFYLVIHCSDGKP---NNVTFLSILFACSYSG 66 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~ 66 (145)
+.+++...|..+.++.|++| |..+| ++..+.+-|
T Consensus 195 ~~~~~~~~W~~Var~sgIPplHLDSilW--lig~~~~~~ 231 (256)
T 1xqo_A 195 RYEAVQKIWDAVARETGIPPLHLDTLLW--LAGRAVLYG 231 (256)
T ss_dssp THHHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHHTTC
T ss_pred hhHHHHHHHHHHHHccCCCchhhhHHHH--Hhccccccc
Confidence 34688888888877788888 77777 666665444
No 290
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.21 E-value=1.2e+02 Score=19.23 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=29.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHH
Q 047113 21 GMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFD 76 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (145)
+.+...++.|+.+....++..-.. .--.+|..-.+.+ ...+..|+.+....+++
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKS-LATRTDQDSRTAL-HWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHH-HHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHH-HHHHHcCcHHHHHHHHH
Confidence 346667778888888887766432 1112233333333 33445566655554443
No 291
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=26.73 E-value=60 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhHhhcCCCC---cHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 047113 32 EREALEAFYLVIHCSDGKP---NNVTFLSILFACSYSGLIEEGIKVFDIMV 79 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (145)
++.|+++.++..+..|+.| ++.++.-++....+.|-++.. +.|..|.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~ 103 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYR 103 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 4566666666444366654 366777777777777777666 4555555
No 292
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.71 E-value=2.9e+02 Score=23.27 Aligned_cols=104 Identities=12% Similarity=-0.048 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhc---cchHHHHHHHHHHhhhhcCcCcc---HHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSY---SGLIEEGIKVFDIMVHDFQLDLN---LEHY 91 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~---~~~~ 91 (145)
....|+.-|.++|.+.+|..+.-+.++ . |.. .-.++-+.. .+++.+.....-.+. ..-..|+ ....
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~er-L----D~L--e~~vd~~~~~~~~~n~~rvclYlls~v-~~lv~p~~fr~~vL 218 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYR-L----DII--ESALKSKLDQDSTSENVKIINYLLTLA-ITTVTNSKFRSSIL 218 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTC-H----HHH--HHHHHHHCCC-CHHHHHHHHHHHHHHH-HHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh-H----HHH--HHHHHhhccccccccHHHHHHHHHHHh-hccCCChHHHHHHH
Confidence 467788888888888888888887754 1 211 112221111 134444444333443 3344553 4677
Q ss_pred HHHHHHHhcC-CCchhhHHHHHHHHHhccChhHHHHHHccCC
Q 047113 92 GITVDLLATG-ETEPYVWGALLGACRIHHNVKIGELVAKDPF 132 (145)
Q Consensus 92 ~~li~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 132 (145)
..+++.|.+. .|| |..++....+.++.+.+.++|..+.
T Consensus 219 r~l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 219 RKSFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888776 343 5567888888999999999998864
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.68 E-value=53 Score=21.64 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=37.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHH-------HHHHHHHHhh--ccchHHHHHHHHHHhh
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNV-------TFLSILFACS--YSGLIEEGIKVFDIMV 79 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~ 79 (145)
.|...++.|+.+....+++.+.. .|..++.. -.+.+..++. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34555678899888888887766 67666633 3345554442 6788877777777643
No 294
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.66 E-value=1.7e+02 Score=20.77 Aligned_cols=128 Identities=9% Similarity=-0.045 Sum_probs=68.3
Q ss_pred chHHHHhccCCCCc---hhhHHHHHHHHHHcC-ChHHHHHHHHHhHhhcCCCCcHH---HHHHHHHHhhccc-hHHHHHH
Q 047113 2 DDAERIFGGIIDKN---VVIWSGMIASHAIHG-QEREALEAFYLVIHCSDGKPNNV---TFLSILFACSYSG-LIEEGIK 73 (145)
Q Consensus 2 ~~A~~~f~~m~~~~---~~~~~~li~a~~~~g-~~~~A~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~-~~~~a~~ 73 (145)
++|.+.++++..|. ..+...+..+.=+.. .-+.+..++..+.. .|+-+... .|..++..+-... +++.+..
T Consensus 28 ~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~-~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~ 106 (339)
T 1ug3_A 28 KEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLC-AGHLSTAQYYQGLYEILELAEDMEIDIPHVWL 106 (339)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHhhChHhhcCccchHH
Confidence 57888888887663 334555555554432 34577788888877 55443222 3444444333322 4556666
Q ss_pred HHHHhhh---hcCcCccHHHHHHHHHHHhcCCCchhhHHHHHHHHHhccChhHHHHHHcc
Q 047113 74 VFDIMVH---DFQLDLNLEHYGITVDLLATGETEPYVWGALLGACRIHHNVKIGELVAKD 130 (145)
Q Consensus 74 ~~~~m~~---~~~~~~~~~~~~~li~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 130 (145)
.+..+.. ..|+.|-...++.+...+.....-......++..+.+....+....+|..
T Consensus 107 ~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 107 YLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6666652 23433321222222221111123334455667777777777788777775
No 295
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=26.14 E-value=38 Score=20.44 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHh
Q 047113 66 GLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLA 99 (145)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 99 (145)
.++++|.+.+..|.......-.+..||.+|..+-
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk 74 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 4555556555555522222234555665555544
No 296
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.95 E-value=1.3e+02 Score=18.95 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhc--CcCccHHHHHHHHHHHhcC
Q 047113 32 EREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDF--QLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 32 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~ 101 (145)
.+++++-+.+..++.|++++..= -.++....+.+.--.|.++++.+. .. +...+..|-.--++.+.+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~-~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIK-QAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHH-HHCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHC
Confidence 45566656554333898886654 455666677777778999999998 55 5555655555555555555
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.81 E-value=1.3e+02 Score=18.88 Aligned_cols=20 Identities=10% Similarity=0.053 Sum_probs=8.2
Q ss_pred CCCchhhHHHHHHHHHHcCC
Q 047113 12 IDKNVVIWSGMIASHAIHGQ 31 (145)
Q Consensus 12 ~~~~~~~~~~li~a~~~~g~ 31 (145)
..+|...-...+.+..+.|.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHhcCC
Confidence 33343333344444444443
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.68 E-value=1.4e+02 Score=19.17 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=53.0
Q ss_pred chHHHHhccCCC--Cch---hhHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHH
Q 047113 2 DDAERIFGGIID--KNV---VIWSGMIASHAIHGQEREALEAFYLVIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVF 75 (145)
Q Consensus 2 ~~A~~~f~~m~~--~~~---~~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (145)
+++.+.|...+. .|. ..|-..++.+ +++..+|..|.. .|+=. -+.-|-..-..+-..|++..|.++|
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555544432 233 3455444443 457788999988 77665 4556777777778899999999999
Q ss_pred HHhhhhcCcCccH
Q 047113 76 DIMVHDFQLDLNL 88 (145)
Q Consensus 76 ~~m~~~~~~~~~~ 88 (145)
..=. ..+-+|-.
T Consensus 120 ~~Gi-~~~A~P~~ 131 (164)
T 2wvi_A 120 QEGI-QQKAEPLE 131 (164)
T ss_dssp HHHH-HTTCBSHH
T ss_pred HHHH-HcCCCcHH
Confidence 9888 67777743
No 299
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.63 E-value=86 Score=19.12 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=20.4
Q ss_pred HHHHHHHcCChHHHHHHHHHhHhhcCCCCcHHHHHHHHHHhhccch
Q 047113 22 MIASHAIHGQEREALEAFYLVIHCSDGKPNNVTFLSILFACSYSGL 67 (145)
Q Consensus 22 li~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 67 (145)
++..+...+.+-.|.++++.+++ .+-..+..|.=--|+.+.+.|.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCC
Confidence 33444444445555555555554 4433444433333444444443
No 300
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=25.01 E-value=61 Score=19.22 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=25.2
Q ss_pred chHHHHhccCCCCchhhHHHHHHHHHHcCChHHHHHHH
Q 047113 2 DDAERIFGGIIDKNVVIWSGMIASHAIHGQEREALEAF 39 (145)
Q Consensus 2 ~~A~~~f~~m~~~~~~~~~~li~a~~~~g~~~~A~~~~ 39 (145)
++|+++|+.++.++...++.++.+... .++.-+..++
T Consensus 64 ~k~R~Lld~v~~kG~~A~~~F~~~L~e-~dp~L~~~L~ 100 (107)
T 3kat_A 64 SQMRKLFSLSQSWDRKCKDGLYQALKE-THPHLIMELW 100 (107)
T ss_dssp HHHHHHHHGGGGCCTTHHHHHHHHHHH-HCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH-cCHHHHHHHH
Confidence 578888888888888888888887753 3444444444
No 301
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.92 E-value=1.9e+02 Score=20.73 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHhHhhcC-CC-C-c---HHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC---ccHHHHHHHHH
Q 047113 26 HAIHGQEREALEAFYLVIHCSD-GK-P-N---NVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD---LNLEHYGITVD 96 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~~~~-~~-p-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~~li~ 96 (145)
+.+.|++++|+..|+.... .- +. . + ..-..-+|..| ..+-.|..+ ++. +..+. |+...-+.=+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~-~i~l~~v~~~~e~~e~~eli~ic---reYilal~i--El~-Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILL-SVPLLVVDNKQEIAEAQQLITIC---REYIVGLSM--ETE-RKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HGGGCCCCSHHHHHHHHHHHHHH---HHHHHHHHH--HHH-HTTSCCCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH-HhhheeeccHHHHHHHHHHHHHH---HHHHHHHHH--HHH-HHhcccCCchhHHHHHHHH
Confidence 3579999999999999764 22 01 1 1 11222233332 223333332 222 22322 24445566666
Q ss_pred HHhcC-----CCchhhHHHHHHHHHhccChhHHHHHHccCCCCCC
Q 047113 97 LLATG-----ETEPYVWGALLGACRIHHNVKIGELVAKDPFHLDP 136 (145)
Q Consensus 97 ~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 136 (145)
+|... ..-.-+....|....+.+++.-|..+.+++.++.|
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 66655 22334667777888888888877777777776655
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.36 E-value=1.1e+02 Score=18.50 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=30.2
Q ss_pred hHhhcCCCCcHHHHHHHHHHhhccc-hHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 42 VIHCSDGKPNNVTFLSILFACSYSG-LIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 42 m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
|++ .|++++..=. .++......+ ..-.|.++++.+. +.+-..+..|-.--++.+.+.
T Consensus 9 l~~-~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRK-AGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALM-EAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHH-TTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHH
T ss_pred HHH-CCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHC
Confidence 445 6666655442 3344444444 4556777777776 444445555544445555544
No 303
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.97 E-value=68 Score=18.95 Aligned_cols=19 Identities=16% Similarity=-0.115 Sum_probs=15.8
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
.++.|++++|.+++.+-.+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5689999999999987644
No 304
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.66 E-value=70 Score=18.83 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=15.6
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
.++.|++++|.+++.+-.+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5689999999999987643
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.22 E-value=1.5e+02 Score=18.73 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=10.9
Q ss_pred cCCCCchhhHHHHHHHHHHcCCh
Q 047113 10 GIIDKNVVIWSGMIASHAIHGQE 32 (145)
Q Consensus 10 ~m~~~~~~~~~~li~a~~~~g~~ 32 (145)
.+..+|...=...+.++.+.|..
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~ 49 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDE 49 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHcCCCHHHHHHHHHHHHHhCCc
Confidence 33444444444445555555553
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.99 E-value=1.7e+02 Score=19.42 Aligned_cols=111 Identities=11% Similarity=-0.008 Sum_probs=67.0
Q ss_pred HHHHcCChHHHHHHHHHhHhhcCCC---------------C-c-HHHHHHHHHHhhccchHHHHHHHHHHhhhhc-----
Q 047113 25 SHAIHGQEREALEAFYLVIHCSDGK---------------P-N-NVTFLSILFACSYSGLIEEGIKVFDIMVHDF----- 82 (145)
Q Consensus 25 a~~~~g~~~~A~~~~~~m~~~~~~~---------------p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----- 82 (145)
.|-+..++..|+..+..+.. -.+. | | ..-|+.+-..|.+.|+.++|...+..--...
T Consensus 71 Cy~klKdYkkA~~~le~il~-~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILE-GKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 34567788888888888764 3333 2 3 3356788888888999988888776543111
Q ss_pred --------CcCccHH--------------H-HH-----------HHHHHHhcCCCchhhHHH--HHHHHHhccChhHHHH
Q 047113 83 --------QLDLNLE--------------H-YG-----------ITVDLLATGETEPYVWGA--LLGACRIHHNVKIGEL 126 (145)
Q Consensus 83 --------~~~~~~~--------------~-~~-----------~li~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~ 126 (145)
++..... + ++ .+|.-|..-.|..-+|-. .-.-|...|..++.++
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~ 229 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKA 229 (242)
T ss_dssp HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHH
Confidence 1110000 0 00 222333333676655533 3345667899999999
Q ss_pred HHccCCCCCC
Q 047113 127 VAKDPFHLDP 136 (145)
Q Consensus 127 ~~~~~~~~~~ 136 (145)
+|..+.+.+|
T Consensus 230 lf~~lR~kDP 239 (242)
T 3kae_A 230 CFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHhcCC
Confidence 9988777666
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.12 E-value=1.4e+02 Score=18.17 Aligned_cols=58 Identities=5% Similarity=-0.045 Sum_probs=34.8
Q ss_pred HhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 41 LVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 41 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.|++ .|++++..=. .++......+..-.|.++++.+. +.+-..+..|-.--++.+.+.
T Consensus 12 ~l~~-~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 12 TLKE-TGVRITPQRH-AILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHH-TTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHH-cCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHC
Confidence 3555 7777765542 33444444455567888888887 555555666655556666655
No 308
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=21.63 E-value=46 Score=17.29 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHhHhhcCCCCcH
Q 047113 31 QEREALEAFYLVIHCSDGKPNN 52 (145)
Q Consensus 31 ~~~~A~~~~~~m~~~~~~~p~~ 52 (145)
+++.|...|.+. + ..++|+.
T Consensus 34 d~~~A~~~F~~~-~-~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-M-NGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-T-TTSCHHH
T ss_pred CHHHHHHHHHHH-H-cCCCHHH
Confidence 889999999886 4 5666654
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.74 E-value=1.6e+02 Score=18.14 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=34.0
Q ss_pred HhHhhcCCCCcHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcCccHHHHHHHHHHHhcC
Q 047113 41 LVIHCSDGKPNNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLDLNLEHYGITVDLLATG 101 (145)
Q Consensus 41 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 101 (145)
.+++ .|++++..= -.++......+..-.|.++++.+. +.+-..+..|-.-.++.+.+.
T Consensus 17 ~l~~-~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 17 SIKK-NGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHH-CC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHH-cCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHC
Confidence 3555 787765544 334445555555667888888887 555555666655555666655
No 310
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.72 E-value=2.5e+02 Score=22.01 Aligned_cols=87 Identities=15% Similarity=0.007 Sum_probs=49.4
Q ss_pred hHhhcCCCC-cHHHHHHHHHHhhccchHHHHHHHHHHhhhhcCcC--ccHHHHHHHHHHHhcC--CCch-hhHHHHHHHH
Q 047113 42 VIHCSDGKP-NNVTFLSILFACSYSGLIEEGIKVFDIMVHDFQLD--LNLEHYGITVDLLATG--ETEP-YVWGALLGAC 115 (145)
Q Consensus 42 m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~--~p~~-~~~~~li~~~ 115 (145)
.++ .+.+| |..+|-..+.-|-..|......++++.-+ ...+. ..+.....++..+-.. .++. ..+-.++.-.
T Consensus 18 l~e-~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~-n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~l 95 (596)
T 4f52_E 18 LEE-QDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEK-NKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLL 95 (596)
T ss_dssp CC----------CHHHHHHHHHHSSSCSHHHHHHHTTCT-THHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHH
T ss_pred hhc-cCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcc-hhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 444 66776 77799999999999999988777777632 11111 1222333445544322 3333 5677788888
Q ss_pred HhccChhHHHHHHcc
Q 047113 116 RIHHNVKIGELVAKD 130 (145)
Q Consensus 116 ~~~g~~~~a~~~~~~ 130 (145)
++.|++.+..--+.+
T Consensus 96 a~lcnPrEvil~llE 110 (596)
T 4f52_E 96 VKLCNPKELLLGLLE 110 (596)
T ss_dssp HHHSCGGGHHHHHGG
T ss_pred HHhCCHHHHHHHHHH
Confidence 888888877444433
No 311
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=20.57 E-value=1.8e+02 Score=18.72 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhHhhcCCCCc------------------------HHHHHHHHHHhhccchHHHHHH
Q 047113 18 IWSGMIASHAIHGQEREALEAFYLVIHCSDGKPN------------------------NVTFLSILFACSYSGLIEEGIK 73 (145)
Q Consensus 18 ~~~~li~a~~~~g~~~~A~~~~~~m~~~~~~~p~------------------------~~~~~~ll~~~~~~~~~~~a~~ 73 (145)
+...+-+++...|.+.+|...|++..+.....+. ..-|- +-.++.+.++++.|..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHH
Confidence 5667779999999999999999994221222111 12233 5567788899999988
Q ss_pred HHHHhh
Q 047113 74 VFDIMV 79 (145)
Q Consensus 74 ~~~~m~ 79 (145)
+++.+.
T Consensus 144 ~Le~Ip 149 (167)
T 3ffl_A 144 ILDGIP 149 (167)
T ss_dssp HHHTSC
T ss_pred HHhcCC
Confidence 887765
No 312
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.52 E-value=87 Score=18.63 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.4
Q ss_pred HHHcCChHHHHHHHHHhHh
Q 047113 26 HAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 26 ~~~~g~~~~A~~~~~~m~~ 44 (145)
.++.|++++|.+++++-.+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4688999999999987643
No 313
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.05 E-value=1.1e+02 Score=19.99 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHh
Q 047113 21 GMIASHAIHGQEREALEAFYLVIH 44 (145)
Q Consensus 21 ~li~a~~~~g~~~~A~~~~~~m~~ 44 (145)
-.|.++.+.|++++|.+...++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999988755
Done!