BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047114
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 24 AMSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL 83
A+SC + + + PC+ + G P+A CC GV+++N+ A T DRRA C CLK A +
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 84 -GAKPEKAKQLPGLCGIKVPVPIDPNIDCNKID 115
G A +P CG+ +P I + DC++++
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL- 83
++C + ++L PC+P+V G P A CC G++ VN+ A T DR+A C CLK+ ++
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 84 GAKPEKAKQLPGLCGIKVPVPIDPNIDC 111
G P A LPG CG+ +P I + +C
Sbjct: 61 GVNPNNAAALPGKCGVSIPYKISASTNC 88
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKA-GPAL 83
M+C + L C+ F+ P SCC GVK + + + T DRRA+C CLK A G
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVP-PSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 84 GAKPEKAKQLPGLCGIKVPVPIDPNIDCNKID 115
G P A+ LPG CG+ +P I + +CN I+
Sbjct: 60 GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 24 AMSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL 83
A++C + + L PC+ ++ + P CC GVK + + A T EDR+ C CLK A A+
Sbjct: 1 AITCGQVTSNLAPCLAYL--RNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 84 -GAKPEKAKQLPGLCGIKVPVPIDPNIDCNKID 115
G KA LP CG+ +P I P+ DC+K+
Sbjct: 59 SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL- 83
++C + + + PC+ + G P+A+CC GV+++ A+T DRR C CLK A +
Sbjct: 1 ITCGQVNSAVGPCLTYARG-GAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 84 GAKPEKAKQLPGLCGIKVPVPIDPNIDCNKID 115
G A +P CG+ VP I +IDC+++
Sbjct: 60 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 91
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL- 83
+ C + + PC+ +V G P P+ CC GVK +++QA ++ DR++ C CLK +
Sbjct: 1 IDCGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 84 GAKPEKAKQLPGLCGIKVPVPIDPNIDCNKI 114
+ A+ +P CG+ +P I NIDC+++
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPALG 84
++C + + + PC+ +V G P P+ CC GV+ +++QA + DR+ +C CLK G A G
Sbjct: 1 LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLK--GIARG 57
Query: 85 AKP---EKAKQLPGLCGIKVPVPIDPNIDCNKI 114
A +P C + VP I P+IDC++I
Sbjct: 58 IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 25 MSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPALG 84
++C + + + PC+ +V G P P+ CC GV+ +++QA + DR+ +C CLK G A G
Sbjct: 1 LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLK--GIARG 57
Query: 85 AKP---EKAKQLPGLCGIKVPVPIDPNIDCNKI 114
A +P C + VP I P+IDC++I
Sbjct: 58 IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 27 CSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKAGPAL-GA 85
C + + PC+ +V G P P+ CC GVK +++QA ++ DR++ C CLK +
Sbjct: 3 CGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61
Query: 86 KPEKAKQLPGLCGIKVPVPIDPNIDCNKI 114
+ A+ +P CG+ +P I NIDC+++
Sbjct: 62 NEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 24 AMSCSEAVTTLMPCVPFVVGSDPRPTASCCLGVKTVNDQATTKEDRRALCECLKKA-GPA 82
A+SC + L PC+ ++ G P P+ CC GVK + A T DR+A C CLK A G
Sbjct: 1 AISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 83 LGAKPEKAKQLPGLCGIKVPVPIDPNIDCNKIDL 116
A LPG CG+ +P I +CN +
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVKF 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,104,771
Number of Sequences: 62578
Number of extensions: 99214
Number of successful extensions: 226
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 12
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)