Query 047115
Match_columns 522
No_of_seqs 449 out of 3072
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.1E-46 7.2E-51 396.3 39.9 438 3-505 8-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.8E-33 9.7E-38 291.8 15.0 393 3-480 24-429 (451)
3 3o7q_A L-fucose-proton symport 100.0 9.6E-31 3.3E-35 271.8 30.3 371 5-479 24-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.8E-27 9.5E-32 249.8 25.0 384 55-490 47-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 5.1E-29 1.7E-33 253.8 9.6 357 10-472 3-363 (375)
6 2xut_A Proton/peptide symporte 99.9 9.2E-24 3.1E-28 224.8 17.1 141 58-243 50-196 (524)
7 2cfq_A Lactose permease; trans 99.9 2E-24 7E-29 223.6 9.6 353 58-489 39-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.2E-11 4.3E-16 127.8 12.0 173 306-490 38-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 3.6E-10 1.2E-14 116.4 16.8 146 306-463 36-182 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 1.6E-09 5.3E-14 113.6 17.4 156 306-476 23-187 (491)
11 2gfp_A EMRD, multidrug resista 99.1 1.7E-10 5.7E-15 116.6 8.8 170 306-490 10-180 (375)
12 2xut_A Proton/peptide symporte 99.0 1.6E-09 5.6E-14 114.5 14.7 156 311-480 27-193 (524)
13 4gc0_A D-xylose-proton symport 98.9 9E-09 3.1E-13 107.7 12.4 152 336-488 59-223 (491)
14 2cfq_A Lactose permease; trans 98.9 3E-09 1E-13 109.4 8.3 145 60-249 257-404 (417)
15 2g9p_A Antimicrobial peptide l 39.6 10 0.00035 20.5 0.8 14 81-94 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.1e-46 Score=396.32 Aligned_cols=438 Identities=23% Similarity=0.377 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++.+.+++++++|++++|||.++++++. |.+.+++..+.. .+.+.++++.|++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999875 677666642210 0113466788999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHh------------------h
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGG------------------A 144 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~ 144 (522)
|+++||+|||++++ ++.+++.+++++++ +
T Consensus 76 G~laDr~GRk~~l~---------------------------------~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~ 122 (491)
T 4gc0_A 76 GYCSNRFGRRDSLK---------------------------------IAAVLFFISGVGSAWPELGFTSINPDNTVPVYL 122 (491)
T ss_dssp HHHHHHTCHHHHHH---------------------------------HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGG
T ss_pred HHHHHHhcCHHHHH---------------------------------HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHH
Confidence 99999999999999 99999999999988 4
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC---
Q 047115 145 AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG--- 220 (522)
Q Consensus 145 a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~--- 220 (522)
++|+++++++|+++|+|.|...+....+ ++| +.|+++ ++..++.+.+..+|.++++.++.......+
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~--------i~E-~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMY--------IAE-LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW 193 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHT-TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccc
Confidence 7899999999999999999999999999 999 999998 999999999999999999999887764332
Q ss_pred --CCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH------hhccc
Q 047115 221 --SWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS------KIIHR 292 (522)
Q Consensus 221 --~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~ 292 (522)
.++||+.+.+..++.++.++..+++||||+|+..+++ .+++++.+++.+++++.+++..+.++... .....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (491)
T 4gc0_A 194 LNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLM 272 (491)
T ss_dssp TTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3579999999999999988999999999999999999 99988888777655433333222221111 11111
Q ss_pred cchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH
Q 047115 293 IYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ 371 (522)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 371 (522)
...++........ +.+..+.+.+..|.|.+.+..+.+..... ......++..+++.++.+++.||+|||+.+..+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 351 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHH
Confidence 2234445555555 77788888889999999998888877777 777888899999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 372 ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
+.++.+.+..... .....+..++..+++..++..+..++.+.+.+|++|++.|+++.|+.+++++++++++
T Consensus 352 ~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 352 MAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665542 1223344555566666777778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHh------cc-chhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcccc
Q 047115 452 AQTFLAMLCH------FK-AGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWF 505 (522)
Q Consensus 452 ~~~~~~~~~~------~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (522)
+.+++.+.+. .+ ...++++++++++..+++++++||||+|++||+|+.++++.+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 9888766442 22 346778888888888899999999999999999988766543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.8e-33 Score=291.83 Aligned_cols=393 Identities=12% Similarity=-0.032 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++.+.......++.+..+++....++.. |. +.+++ ++..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAM--PY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH--HH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 3456667777788888888877776553 22 34455 688899999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh----hhhhHHHHHHHHHH
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA----AFNIYMLILGCVLL 158 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----a~~~~~l~~~r~l~ 158 (522)
|+++||+|||++++ .+.++.+++.+++++ ++|++.++++|+++
T Consensus 83 G~l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 83 GSVSDRSNPRVFLP---------------------------------AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHHHHSCHHHHHH---------------------------------HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHhcCchHHHH---------------------------------HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 99999999999999 999999999999999 99999999999999
Q ss_pred HhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHhhHHHHH
Q 047115 159 GVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWG-WRISLAMAAVPAS 236 (522)
Q Consensus 159 G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~g-wr~~f~i~~~~~~ 236 (522)
|++.+...+...++ +.| ++|+++ ++++++.+.+..+|.++++.+++.+.+.. | ||+.|++.++..+
T Consensus 130 G~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~ 197 (451)
T 1pw4_A 130 GWFQGMGWPPCGRT--------MVH-WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAI 197 (451)
T ss_dssp HHHHHHTHHHHHHH--------HHT-TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHH
T ss_pred HHHhhhccchHHHH--------HHH-HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Confidence 99999999999999 999 888888 99999999999999999999998766443 6 9999998877665
Q ss_pred HH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhh
Q 047115 237 IL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVI 315 (522)
Q Consensus 237 ~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (522)
+. ++..+++||+|+....+++ .+..++...+...+++.+...++. ..++.+++ +..+......+........+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 271 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQSCGLPPI-EEYKNDYPDDYNEKAEQELTAKQI--FMQYVLPN---KLLWYIAIANVFVYLLRYGI 271 (451)
T ss_dssp HHHHHHHHHCCCSSTTTCCCSC-TTTCCC-------------CCTHH--HHHHTSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCHhhcCCCCh-hhhcccccccchhhhhcccccccc--hHHHHHcC---HHHHHHHHHHHHHHHHHHHH
Confidence 54 4455678888754211111 000000000000000000000000 00122222 23333333334444455667
Q ss_pred HhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHHHHHHHHHH-HHHHHHHHHHHHhhCCCC
Q 047115 316 SFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLFLLGGIQIL-VSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 316 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 391 (522)
..+.|.++++ .|++..+.+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 341 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------- 341 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---------
T ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence 7888988876 799998888 889999999999999999999999 99988776665544 333332211
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchh-hHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLCHFKAGV-FFC 469 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~ 469 (522)
+....+......++.+.+.+. ..+....+..|.+|++.|+++.|+.+.+..+ +..++|.+.+.+.++.++.. +.+
T Consensus 342 --~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred --cccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 111233333333343333332 2334456778999999999999999999999 99999999999999988654 444
Q ss_pred HHHHHHHHHHH
Q 047115 470 FGGWVAFMTTF 480 (522)
Q Consensus 470 ~~~~~~i~~~~ 480 (522)
.+++.++..++
T Consensus 419 ~~~~~~~~~~~ 429 (451)
T 1pw4_A 419 MIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=9.6e-31 Score=271.79 Aligned_cols=371 Identities=9% Similarity=0.018 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.+...+..++..+..+++....++.. |.+.+++ |++..+.+++.+.+.++..++++++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556666777788898888877664 6666666 789999999999999999999999999
Q ss_pred hhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH---hhhhhhHHHHHHHHHHHhh
Q 047115 85 VTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG---GAAFNIYMLILGCVLLGVG 161 (522)
Q Consensus 85 l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~r~l~G~~ 161 (522)
++||+|||++++ .+.++.+++.+++ +++++++.++++|+++|++
T Consensus 84 l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 84 LMKKLSYKAGII---------------------------------TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHSCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHH---------------------------------HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999 8889999999999999999
Q ss_pred hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCC-----------------
Q 047115 162 IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ-KIKGSW----------------- 222 (522)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~-~~~~~~----------------- 222 (522)
.|...+....+ ++| ++|+++ ++++++.+.+..+|.++++.+++.+. +..+..
T Consensus 131 ~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 131 LGCLETAANPF--------VTV-LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHH--------HHH-SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHhhhhHHHH--------HHH-HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 99999999999 999 888888 99999999999999999999998887 443210
Q ss_pred -----chHHHHHhhHHHHHHHHHH--hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 223 -----GWRISLAMAAVPASILTIG--SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 223 -----gwr~~f~i~~~~~~~~~~~--~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+||+.|++.++..++..+. ....||+++. +++ +++ +++.+.. .+++++++..
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~~~----------~~~~~~~-------~~~~~~~~~~ 260 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DAK----------QGSFSAS-------LSRLARIRHW 260 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-CSS----------TTSHHHH-------HHHHTTCSHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-ccc----------ccchhhh-------HHHHHhChHH
Confidence 1999997765554443333 2335666531 111 100 0011111 1144444333
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHH-HHHc-CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVL-FMTI-KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQIL 373 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (522)
+...... +...........+.|.+ +++. |++..+.+ .......++.+++.++.++++||++||+.+..+..+..
T Consensus 261 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 261 RWAVLAQ---FCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3333222 33333344566788888 7665 99999998 88888999999999999999999999999988877776
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
++.+++... +. .+. .....+.+.+.+.. .+..+.+..|.+|++ ++.+.++.. .+.++..++|.
T Consensus 337 ~~~~~~~~~------------~~-~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 337 ALCLISAFA------------GG-HVG-LIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHHC------------CH-HHH-HHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHHc------------CC-cHH-HHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 665544432 11 122 22223333444333 345566667889876 888888877 67799999999
Q ss_pred HHHHHHHhcc-chhhHHHHHHHHHHHH
Q 047115 454 TFLAMLCHFK-AGVFFCFGGWVAFMTT 479 (522)
Q Consensus 454 ~~~~~~~~~g-~~~~~~~~~~~~i~~~ 479 (522)
+.+.+.++.+ +...+.+.+++.+...
T Consensus 400 ~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 400 VMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999988 6554444444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=2.8e-27 Score=249.78 Aligned_cols=384 Identities=11% Similarity=0.012 Sum_probs=246.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
+|+|++..+.+++.+.+.++..++++++|+++|| +|||+++. .+.+
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~---------------------------------~~~~ 93 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF---------------------------------WGGV 93 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH---------------------------------HHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH---------------------------------HHHH
Confidence 4558999999999999999999999999999999 89999999 9999
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc---hhHHHHHHHHHHHHHHHHHH
Q 047115 134 CYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL---SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 134 l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---g~~~~~~~~~~~lG~~~~~~ 210 (522)
+.+++.+++++++|++.++++|+++|++.|...+...++ ++| ++|+++ +...++++.+..+|..+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL--------VGT-LYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH--------HHH-HcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999 777654 56777789999999999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhccc-CC----ChHHHHHhCCCHHHHHHHHHH----------------H
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFL-PE----TPNSIIQRNKDHQKAEEILQI----------------V 269 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~l-pe----sp~~~~~~~~~~~~~~~~~~~----------------~ 269 (522)
+++.+.+.. |||+.|++.++..++..+..++. |+ ..+...++.+ .++.++..+. .
T Consensus 165 ~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~ 240 (491)
T 4aps_A 165 IVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNL 240 (491)
T ss_dssp HHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887543 79999998766655544433322 11 1000000111 2222222221 0
Q ss_pred cCCcchHHHHHH--H-------------HHHHH-hhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCch
Q 047115 270 RNTTDVKAELDD--I-------------IRASS-KIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKST 332 (522)
Q Consensus 270 ~~~~~~~~~~~~--~-------------~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 332 (522)
.+..+.++.... . .+... ....++............+...........+.|.+.++ .+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4aps_A 241 VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP 320 (491)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC
T ss_pred ccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC
Confidence 111111100000 0 00000 00000111111111111122222233344556666655 4666566
Q ss_pred hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH-----HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 333 SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL-----LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
.+ .......+..+++.++.+++.||++||+... .+..+..++.+++....... .+ ..+...+......++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l 395 (491)
T 4aps_A 321 VS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWAL 395 (491)
T ss_dssp SG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHH
T ss_pred HH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHH
Confidence 66 7788888999999999999999999986544 55555555555444432110 00 011123333444444
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccC
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
.+.+.+. ..+....+..|.+|++.|+++.|+.+....++..+++.+.+.+.+......+..++.++.+..++.+++.++
T Consensus 396 ~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 396 VILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 344556777899999999999999999999999999999887776554566777777777766666666555
Q ss_pred CCC
Q 047115 488 TKY 490 (522)
Q Consensus 488 ~~~ 490 (522)
.++
T Consensus 475 ~~~ 477 (491)
T 4aps_A 475 IQG 477 (491)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=5.1e-29 Score=253.78 Aligned_cols=357 Identities=12% Similarity=0.113 Sum_probs=254.7
Q ss_pred HHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047115 10 IVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF 89 (522)
Q Consensus 10 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~ 89 (522)
...+++.+..+++.+...+.. |.+.+++ |.++.+.+++.+.+.++..++++++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777776554 4544444 78999999999999999999999999999999
Q ss_pred ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 047115 90 GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSI 169 (522)
Q Consensus 90 Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 169 (522)
|||+++. .+.++.+++.++.+++++++.+++.|+++|++.+...+..
T Consensus 63 g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 63 GRRPVIL---------------------------------VGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp CCCCCCH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-HhcccCC
Q 047115 170 QRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFLPE 247 (522)
Q Consensus 170 ~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~lpe 247 (522)
..+ +.| +.|+++ ++.+++.+.+..+|..+++.+++.+.+. .|||+.|.+.++..++..+ ..+++||
T Consensus 110 ~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 110 RTL--------PRD-LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHH--------HHH-HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHH--------HHH-HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999 999 888777 9999999999999999999999988744 4899999987777666554 4567888
Q ss_pred ChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-c
Q 047115 248 TPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-I 326 (522)
Q Consensus 248 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 326 (522)
+++. +++ +++.+ ++. + +.+++ ++.+......+...........+.|.++++ .
T Consensus 178 ~~~~---~~~-~~~~~---------~~~----~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 178 TRPV---DAP-RTRLL---------TSY----K-------TLFGN---SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL 230 (375)
T ss_dssp CSTT---TCC-CCCTT---------TCS----T-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH
T ss_pred cCCC---Ccc-cccHH---------HHH----H-------HHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7642 111 10000 000 0 11211 122222222233333344555666766655 6
Q ss_pred CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHH
Q 047115 327 KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ-ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLI 405 (522)
Q Consensus 327 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (522)
|++..+.+ .......++.+++.++.+++.||.+++. ..+... ...+...+..... .....+......
T Consensus 231 g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 298 (375)
T 2gfp_A 231 GLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHH
Confidence 88888888 8888889999999999999999998732 222222 2222221111110 012233333444
Q ss_pred HHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 047115 406 CVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGG 472 (522)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 472 (522)
++.+.+.+.. .+....+..|..| ++|+++.|+.+....++..+++.+.+.+.+..++...+.+.+
T Consensus 299 ~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 299 ALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 4444554443 3455566689888 899999999999999999999999999887766555544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=9.2e-24 Score=224.76 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=125.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+++..+.+++.+.+.++..++.+++|+++||+ |||+++. .+.++.+
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~---------------------------------~~~~~~~ 96 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL---------------------------------WLSLIYC 96 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH---------------------------------HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---------------------------------HHHHHHH
Confidence 38999999999999999999999999999999 9999999 9999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH---HHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAF-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL---LQISICYLILSANLL 211 (522)
Q Consensus 137 ~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~---~~~~~~lG~~~~~~~ 211 (522)
++.++.++++ +++.++++|++.|++.|...+...++ +.| ++|+++ +++.+. .+.+..+|..+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSF--------MGD-QFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHH--------HHH-TCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHH--------HHH-HcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999 999 888887 877666 889999999999999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhc
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSL 243 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 243 (522)
++.+.+. .|||+.|++.++..++..+..+
T Consensus 168 ~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 168 MPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp STHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 8888754 3799999987776665544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=2e-24 Score=223.57 Aligned_cols=353 Identities=10% Similarity=0.016 Sum_probs=209.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++.+.|++.+.+.++..++++++|+++||+|||++++ .+..++++
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~---------------------------------~~~~~~~~ 85 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL---------------------------------WIITGMLV 85 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH---------------------------------HHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---------------------------------HHHHHHHH
Confidence 778999999999999999999999999999999999999 76666554
Q ss_pred HH---HHHhhhhhh-HHHHHHHHHHHhhhhhhhccccccccccccccccccccCC--cc-hhHHHHHHHHHHHHHHHHHH
Q 047115 138 HC---SIGGAAFNI-YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT--RL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 138 ~~---~~~~~a~~~-~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~--~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
+. ....+++.. ..+..++++.|++.|...+..... +.+ +.++ ++ +...+....+..+|..++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~-~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA--------VEA-FIEKVSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHH--------HHH-HHHHHHHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHH-HHHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence 32 212233222 123456666666666555444444 444 4332 23 66677777778889999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhc
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII 290 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (522)
+++.+.+ .+||+.|++.++..++..+..++.||+|+. +.+ .++.++ .+.++.. .++ ..+++
T Consensus 157 l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~----~~~~~~~---~~~----~~~~~ 217 (417)
T 2cfq_A 157 IVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS---SAT-VANAVG----ANHSAFS---LKL----ALELF 217 (417)
T ss_dssp HHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSC-SSSSSS----SCCCCCC---HHH----HHHHT
T ss_pred HHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccc-cccccc----ccccccc---HHH----HHHHh
Confidence 8887764 269999998776655555555555443311 001 000000 0000000 011 11334
Q ss_pred cccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc-C---CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH
Q 047115 291 HRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI-K---VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 366 (522)
+++..+...+. .+.....+.....+.|.++.+. + .+....+ .......++.+++.++.++++||+|||+.+.
T Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~ 293 (417)
T 2cfq_A 218 RQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALL 293 (417)
T ss_dssp TCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 33222222221 1111112222333456665443 2 1233334 5666777888899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHH-HHHHH
Q 047115 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSIT-VAVDL 445 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ 445 (522)
.+..+..++.+.+... ...+..++..++...+... ..+..+.+.+|.+|++.|+++.++. +....
T Consensus 294 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 294 LAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHHHHHHHHHHTTC-------------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 7766665554333211 1122222222222222221 1223356778999999999999995 78888
Q ss_pred HHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 446 LFTFLVAQTFLAMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 446 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
+++.++|.+.|.+.++.++. .+.+.+++.++..++.+...||++
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999887743 445555555555555555555543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.28 E-value=1.2e-11 Score=127.85 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=127.5
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++. .+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++.......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 115 (451)
T 1pw4_A 38 AAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115 (451)
T ss_dssp HHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444444455666778888888 9999999 99999999999999999999999999999999998888887777652100
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-A 464 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~ 464 (522)
..+.+..++...+.+.+.+.. .+....+++|.+|+++|+++.++.+....++..++|.+.+.+.+..+ |
T Consensus 116 ---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 116 ---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp ---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred ---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 012223344444444444433 34445777899999999999999999999999999999999888877 6
Q ss_pred hh-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 465 GV-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 465 ~~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.. +.+.+.+..+..++.++++||+++
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 54 455555555555666667776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.18 E-value=3.6e-10 Score=116.38 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=113.0
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~- 113 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-
Confidence 44444445666778888899999999999 9999999999999999999999999999999999888888777633221
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML-CHFK 463 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g 463 (522)
.+..+..++..++.+.+.+.. .+....+.+|.+|+++|+++.++.+....++..+++.+.+.+. +..+
T Consensus 114 ---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 114 ---------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred ---------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 122344444445555554433 3344577789999999999999999999999999999999888 4443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.10 E-value=1.6e-09 Score=113.59 Aligned_cols=156 Identities=16% Similarity=0.090 Sum_probs=113.6
Q ss_pred HhhhccchhhHhcHHHHHHH------cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMT------IKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVSQVM 378 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~ 378 (522)
+.....++....+.+.++++ .|++..+.+ +..+...++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 44444445555666666644 799999999 99999999999999999999999 89999999988888777766
Q ss_pred HHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 379 IRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEI--RSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+... ++.+...+...+.+.+.+.. .+....+.+|.+|++. |+.+.++.+....++..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 5432 12233334444444444433 3445577789999988 777888888999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHH
Q 047115 457 AMLCHFKAGVFFCFGGWVAF 476 (522)
Q Consensus 457 ~~~~~~g~~~~~~~~~~~~i 476 (522)
.+.++.+|...+...++..+
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 99998886554443333333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=1.7e-10 Score=116.56 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=123.8
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 86 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--
Confidence 33333444555667777788999999999 999999999999999999999999999999988888888877666542
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+.+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.++.+|.
T Consensus 87 -----------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 87 -----------SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 223333344444444332 34455567789999999999999999999999999999999888877765
Q ss_pred h-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 466 V-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 466 ~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
. +.+.+....+..+...+.+||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 4 444444444444435556676543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.04 E-value=1.6e-09 Score=114.51 Aligned_cols=156 Identities=14% Similarity=0.027 Sum_probs=111.2
Q ss_pred cchhhHhcHHHHH-HHcC------CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHH
Q 047115 311 RVNVISFNAPVLF-MTIK------VRKSTSLLMSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQILVSQVMIRSI 382 (522)
Q Consensus 311 ~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 382 (522)
.++....+.+.++ ++.| ++..+.+ +..+...++..++.++.|+++||+ |||+.+..+.++..++.+++...
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666 4578 9999999 899999999999999999999999 99999998888877776665542
Q ss_pred HHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 047115 383 MAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSI---TVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~ 459 (522)
....+...+...+.+.+.+. ..+....+.+|.+|++.|++..+. .+....++..++|.+.+.+.
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233344444444444443 334555777899999999776665 88889999999999999998
Q ss_pred HhccchhhHHHHHHHHHHHHH
Q 047115 460 CHFKAGVFFCFGGWVAFMTTF 480 (522)
Q Consensus 460 ~~~g~~~~~~~~~~~~i~~~~ 480 (522)
++.+|...+...++..+...+
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 887765444433333333333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.87 E-value=9e-09 Score=107.68 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=98.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCCcchhhHHHHHHHHHHHH
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGD-----HGGFNIGYAYLILFLICVYKA 410 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 410 (522)
++.+...++.++|+++.|+++||+|||+.+.++.++..++.++.++........ ....-.++.+..++.-++.+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999988888877665321000000 000001233344444445444
Q ss_pred hhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chhhHHHHHHHHHHHHHHH
Q 047115 411 GFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK--------AGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 411 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~i~~~~~~ 482 (522)
+.+. ..+....+.+|..|++.|+...++.+.....+..+++.+......... |........+..+...+..
T Consensus 139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 4443 334556788999999999999999988888888777766555544321 2333444444445555566
Q ss_pred hhccCC
Q 047115 483 FFLPET 488 (522)
Q Consensus 483 ~~~~~~ 488 (522)
++.||+
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 677875
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.86 E-value=3e-09 Score=109.38 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=116.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+....++..+...++..++.++.|+++||+|||+++. .+.++.+++.
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~---------------------------------~~~~~~~~~~ 303 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL---------------------------------LAGTIMSVRI 303 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---------------------------------HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH---------------------------------HHHHHHHHHH
Confidence 3456788888888999999999999999999999999 8888888887
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHHHhhhhc
Q 047115 140 SIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 140 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~~~~l~~ 217 (522)
++.++.++.+.+++..++.|++.+...+....+ ++| .+|++. +...++ ++....+|..++|.+++.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~-~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 304 IGSSFATSALEVVILKTLHMFEVPFLLVGCFKY--------ITS-QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH--------HHH-HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 778888888888888888888877766666677 999 889888 998888 478888999999999887775
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHH-hcccCCCh
Q 047115 218 IKGSWGWRISLAMAAVPASILTIG-SLFLPETP 249 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~-~~~lpesp 249 (522)
. .|++..|.+.++..++..+. ....||.+
T Consensus 375 ~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 375 S---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp H---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred h---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3 37888888877766665544 44456543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=39.56 E-value=10 Score=20.51 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=11.4
Q ss_pred HHHHhhhhhccccc
Q 047115 81 FASKVTRAFGRKAS 94 (522)
Q Consensus 81 ~~g~l~dr~Grk~~ 94 (522)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999865
Done!