BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047119
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 138/208 (66%), Gaps = 9/208 (4%)
Query: 26 VFEVQNNCSYTVWAAANPSGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGK 85
FE+ N CSYTVWAAA P GGR+L QGQSW +N + GRIW R C F+ S G G+
Sbjct: 2 TFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTG-GRIWGRTGCSFDGS-GRGR 59
Query: 86 CESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKV 145
C++GDC GVL C + G PP LAE++ NN+ FFD+S+VDGFNVP++F TS GC +
Sbjct: 60 CQTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-RG 118
Query: 146 IKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKDLCP 205
I+C DING CP L+ PGGCN+PC+V K DQ+ T Y + FK CP
Sbjct: 119 IRCAADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSGACS------PTDYSQFFKRNCP 172
Query: 206 DAYSYALDDATSTFTCPTGTDYKVVFCP 233
DAYSY DD T+TFTCP GT+Y+VVFCP
Sbjct: 173 DAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 143/208 (68%), Gaps = 11/208 (5%)
Query: 26 VFEVQNNCSYTVWAAANPSGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGK 85
F++ N C+YTVWAAA+P GGR L GQSW + +P + RIW R +C F+ +NG GK
Sbjct: 2 TFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTN-ARIWGRTSCTFD-ANGRGK 59
Query: 86 CESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKV 145
CE+GDCNG+L C G+PP LAE++ NN+ + D+S+VDGFN+P++F SGC +
Sbjct: 60 CETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDF----SGC-RG 114
Query: 146 IKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKDLCP 205
I+C DING CP+EL+ PGGCN+PC+V K +++ GPTT Y K FKD CP
Sbjct: 115 IQCSVDINGQCPSELKAPGGCNNPCTVFKTNEY---CCTDGPGSCGPTT-YSKFFKDRCP 170
Query: 206 DAYSYALDDATSTFTCPTGTDYKVVFCP 233
DAYSY DD TS FTCP+GT+YKV FCP
Sbjct: 171 DAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 196 bits (498), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 130/211 (61%), Gaps = 7/211 (3%)
Query: 25 TVFEVQNNCSYTVWAAANP-SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGT 83
VF V N C +TVWAA+ P GGR+L +G+SW + T P RIWAR C+F+ S G
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRI-TAPAGTTAARIWARTGCKFDAS-GR 58
Query: 84 GKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEF-KGTSSGC 142
G C +GDC GVL C G P LAEY+ + NN+ FFD+S++DGFNVP+ F SGC
Sbjct: 59 GSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGC 118
Query: 143 NKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKD 202
++ +C D+N CP ELR G CN+ C V K D++ T Y + FK
Sbjct: 119 SRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCH---PTNYSRYFKG 175
Query: 203 LCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
CPDAYSY DDATSTFTCP GT+YKVVFCP
Sbjct: 176 QCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 132/212 (62%), Gaps = 12/212 (5%)
Query: 26 VFEVQNNCSYTVWAAANP-SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTG 84
EV+NNC YTVWAA+ P GGR L +GQ+W++N P + R+W R NC FN + G G
Sbjct: 2 TIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINA-PRGTKMARVWGRTNCNFNAA-GRG 59
Query: 85 KCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGT--SSGC 142
C++GDC GVL C G PP LAEY+ + + F+D+S+VDGFN+P+ F T S G
Sbjct: 60 TCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGK 119
Query: 143 NKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKD 202
I C +ING CP ELR PGGCN+PC+ Q+ GP T + K FK
Sbjct: 120 CHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQY-----CCTQGPCGP-TFFSKFFKQ 173
Query: 203 LCPDAYSYALDDATSTFTCPTG-TDYKVVFCP 233
CPDAYSY DD TSTFTCP G T+Y+V+FCP
Sbjct: 174 RCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 130/212 (61%), Gaps = 12/212 (5%)
Query: 26 VFEVQNNCSYTVWAAANP-SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTG 84
EV+NNC YTVWAA+ P GGR L +GQ+W++N P + RIW R C FN + G G
Sbjct: 2 TIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINA-PRGTKMARIWGRTGCNFNAA-GRG 59
Query: 85 KCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGT--SSGC 142
C++GDC GVL C G PP LAEY+ +N+ F+D+S+VDGFN+P+ F T S G
Sbjct: 60 TCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGK 119
Query: 143 NKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKD 202
I C +ING CP L+ PGGCN+PC+ Q+ GP T K FK
Sbjct: 120 CHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQY-----CCTQGPCGP-TELSKFFKK 173
Query: 203 LCPDAYSYALDDATSTFTCPTG-TDYKVVFCP 233
CPDAYSY DD TSTFTCP G T+Y+VVFCP
Sbjct: 174 RCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 129/212 (60%), Gaps = 12/212 (5%)
Query: 26 VFEVQNNCSYTVWAAANP-SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTG 84
VFEV NNC YTVWAAA P GGR L +GQSW P + RIW R NC F+ + G G
Sbjct: 3 VFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPG-TKMARIWGRTNCNFDGA-GRG 60
Query: 85 KCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNK 144
C++GDC GVL C G PP LAEY+ +N+ F+D+SV+DGFN+P+ F T G K
Sbjct: 61 WCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGK 120
Query: 145 V--IKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAYFKIFKD 202
I+C +ING CP LR PGGCN+PC+ Q+ GP T + FK
Sbjct: 121 CHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQY-----CCTQGPCGP-TELSRWFKQ 174
Query: 203 LCPDAYSYALDDATSTFTCPTG-TDYKVVFCP 233
CPDAYSY DD TSTFTC + TDYKV+FCP
Sbjct: 175 RCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 134/217 (61%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P N G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G + D+S + GFNVP++F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQYGKDYIDISNIKGFNVPMDFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GP T Y
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGP-TEY 169
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 133/217 (61%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P N G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G + D+S + GFNVP+ F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQYGKDYIDISNIKGFNVPMNFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GP T Y
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGP-TEY 169
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 133/217 (61%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P N G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G + D+S + GFNVP+ F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQYGKDYIDISNIKGFNVPMNFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GP T Y
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGP-TEY 169
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKG-GKIWARTDCYFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G + D+S + GFNVP++F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQYGKDYIDISNIKGFNVPMDFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GP T Y
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGP-TEY 169
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 132/217 (60%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P N G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCXFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G + D+S + GFNVP+ F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQXGKDYIDISNIKGFNVPMNFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GPT
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGPTEXS 170
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 171 -RFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CSYTVWAAA+ +GGR+L G+SW +N +P G+IWAR +C F+
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKG-GKIWARTDCYFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G G C +GDC G+L C G PP LAE+S +N G + D+S + GFNVP++F
Sbjct: 61 S-GRGICRTGDCGGLLQCKRFGRPPTTLAEFS---LNQYGKDYIDISNIKGFNVPMDFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GP T Y
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGP-TEY 169
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 130/217 (59%), Gaps = 22/217 (10%)
Query: 26 VFEVQNNCSYTVWAAANP------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV 79
FE+ N CS TVWAAA+ +GGR+L G+SW +N +P N G+IWAR +C F+
Sbjct: 2 TFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCXFDD 60
Query: 80 SNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMG--FFDVSVVDGFNVPIEFKG 137
S G+G C++GDC G+L C G PP LAE+S +N G D+S + GFNVP+ F
Sbjct: 61 S-GSGICKTGDCGGLLRCKRFGRPPTTLAEFS---LNQXGKDXIDISNIKGFNVPMNFSP 116
Query: 138 TSSGCNKVIKCRGDINGLCPTELRHP-GGCNHPCSVLKNDQFXXXXXXXXXXXXGPTTAY 196
T+ GC + ++C DI G CP +L+ P GGCN C+V + ++ GPT
Sbjct: 117 TTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEY-----CCTTGKCGPTEXS 170
Query: 197 FKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
+ FK LCPDA+SY LD T T TCP ++Y+V FCP
Sbjct: 171 -RFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 26 VFEVQNNCSYTVWAAANPSG--------GRELYQGQSWIVNTDPNFNDIGRIWARINCRF 77
+NNC Y VW S G EL S+ ++T +N GR WAR C
Sbjct: 2 TISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWN--GRFWARTGCST 59
Query: 78 NVSNGTGKCESGDC-NGVLYCVSDGA-PPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEF 135
+ S G C + DC +G + C +GA PP LAE++ F+DVS+VDGFN+P+
Sbjct: 60 DAS-GKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSV 118
Query: 136 --KGTSSGCNKVIKCRGDINGLCPTELRHPG------GCNHPCSVLKNDQFXXXXXXXXX 187
+G + C K C ++N +CP+EL+ G C C Q+
Sbjct: 119 TPQGGTGDC-KTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTP 177
Query: 188 XXXGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
PT Y +IF + CPDAYSYA DD TFTC G +Y + FCP
Sbjct: 178 ETCPPTN-YSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 100/221 (45%), Gaps = 23/221 (10%)
Query: 31 NNCSYTVWAAA-----NPS---GGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNG 82
NNC TVW P G EL S V+ ++ GR W R C + + G
Sbjct: 7 NNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWS--GRFWGRTRCSTDAA-G 63
Query: 83 TGKCESGDC-NGVLYCVSDGA-PPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEF--KGT 138
CE+ DC +G + C GA PP L E + ++DVS+VDGFN+P+ +G
Sbjct: 64 KFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGG 123
Query: 139 SSGCNKVIKCRGDINGLCPTELRHPGG------CNHPCSVLKNDQFXXXXXXXXXXXXGP 192
+ C K C ++N +CP L+ C C + ++ P
Sbjct: 124 TGEC-KPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETC-P 181
Query: 193 TTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233
T Y +IF+ CP AYSYA DD STFTC G DY + FCP
Sbjct: 182 PTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 27 FEVQNNCSYTVWAA-----ANPSGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSN 81
+ N C +TVW A A GG EL+ G SW ++T + IW R C F+ +
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQY--IWGRTGCSFDRA- 59
Query: 82 GTGKCESGDCNG-VLYCVSDGAPPVILAEYS-FQGVNNMGFFDVSVVDGFNVPIEFKGTS 139
G G+C++GDC G L C + A P +AE S QG N + S + GFNVP+ K +S
Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQG--NYTYGVTSTLKGFNVPMNLKCSS 117
Query: 140 SGCNKVIKCR 149
+ CR
Sbjct: 118 ---GDALPCR 124
>pdb|2HRV|A Chain A, 2a Cysteine Proteinase From Human Rhinovirus 2
pdb|2HRV|B Chain B, 2a Cysteine Proteinase From Human Rhinovirus 2
Length = 142
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 74 NCRFNVSNGTGKCESGDCNGVLYCVSDGAPPVILAEYSFQGVNNMGFFDV 123
+ ++N+ G G CE GDC G L C G ++ A G N++ F D+
Sbjct: 89 HIQYNLLIGEGPCEPGDCGGKLLC-KHGVIGIVTA----GGDNHVAFIDL 133
>pdb|1YKM|B Chain B, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|D Chain D, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|F Chain F, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|H Chain H, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|J Chain J, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|L Chain L, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKN|B Chain B, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|D Chain D, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|F Chain F, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|H Chain H, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|J Chain J, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|L Chain L, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
Length = 238
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 NCSYTVWAAANPSGGRELYQGQSWIVNTDPNFNDIGR 68
N +W A +GGRE ++ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRERHKNDRYLAPLDPNFGGVGR 128
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 68 RIWARINCRFNVSNGTGKCESGDCNGVLYCVSDGAPPVILAEY 110
RI A + + +G E D G CVSD PP +EY
Sbjct: 51 RIVAALETHIHADFVSGAREXADRAGAAICVSDEGPPEWKSEY 93
>pdb|2KHU|A Chain A, Solution Structure Of The Ubiquitin-Binding Motif Of Human
Polymerase Iota
pdb|2KHW|A Chain A, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
Length = 108
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 198 KIFKDLCPD---AYSYALDDATSTFTCPTGTDYKVVF 231
K+FK D + DDAT TFT G+D K+ F
Sbjct: 28 KVFKQYANDNGVDGEWTYDDATKTFTVTEGSDEKITF 64
>pdb|1YKO|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKP|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
Length = 238
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 NCSYTVWAAANPSGGRELYQGQSWIVNTDPNFNDIGR 68
N +W A +GGR ++ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRHRHKNDRYLAPLDPNFGGVGR 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,251,134
Number of Sequences: 62578
Number of extensions: 311842
Number of successful extensions: 567
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 22
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)