Query 047119
Match_columns 233
No_of_seqs 139 out of 684
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 2.5E-80 5.5E-85 539.8 16.7 202 26-232 1-219 (219)
2 cd09219 TLP-F thaumatin-like p 100.0 9.8E-80 2.1E-84 538.1 16.8 202 27-233 1-229 (229)
3 smart00205 THN Thaumatin famil 100.0 1.5E-79 3.3E-84 534.8 17.6 203 27-233 1-218 (218)
4 PF00314 Thaumatin: Thaumatin 100.0 8E-76 1.7E-80 510.6 7.3 198 31-233 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 6E-59 1.3E-63 387.4 14.6 149 27-232 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 3.4E-54 7.3E-59 357.2 14.4 150 27-233 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 2.4E-49 5.2E-54 328.8 13.8 144 27-231 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.2 5.5E-05 1.2E-09 63.4 13.1 45 102-147 71-118 (155)
9 cd09220 GH64-GluB-like glycosi 87.8 1.2 2.5E-05 42.4 5.7 77 51-138 62-145 (369)
10 PF07172 GRP: Glycine rich pro 77.0 1.9 4E-05 33.4 2.1 27 1-27 1-28 (95)
11 cd09214 GH64-like glycosyl hyd 73.6 3.6 7.8E-05 38.4 3.5 31 107-139 125-155 (319)
12 cd09214 GH64-like glycosyl hyd 73.3 2.4 5.2E-05 39.5 2.2 39 192-230 274-317 (319)
13 cd09216 GH64-LPHase-like glyco 71.1 2.9 6.2E-05 39.6 2.2 77 50-139 60-143 (353)
14 TIGR00192 urease_beta urease, 67.5 12 0.00026 29.4 4.6 53 20-73 17-94 (101)
15 cd00407 Urease_beta Urease bet 66.7 13 0.00028 29.3 4.6 52 21-73 18-94 (101)
16 cd09216 GH64-LPHase-like glyco 63.4 8.2 0.00018 36.6 3.6 24 192-215 308-333 (353)
17 cd09220 GH64-GluB-like glycosi 62.2 9.7 0.00021 36.3 3.9 24 192-215 319-344 (369)
18 PRK13202 ureB urease subunit b 61.8 19 0.00042 28.4 4.8 50 23-73 21-95 (104)
19 PF13978 DUF4223: Protein of u 60.4 12 0.00025 26.1 3.0 39 3-41 1-41 (56)
20 PRK13203 ureB urease subunit b 57.2 21 0.00045 28.1 4.3 52 21-73 18-94 (102)
21 PRK13201 ureB urease subunit b 56.4 23 0.0005 29.2 4.6 53 20-73 17-94 (136)
22 PRK13204 ureB urease subunit b 55.8 23 0.0005 29.9 4.6 54 20-74 40-118 (159)
23 PRK13198 ureB urease subunit b 51.4 30 0.00066 29.2 4.6 54 20-74 45-123 (158)
24 PRK13205 ureB urease subunit b 50.0 33 0.00072 29.0 4.6 54 20-74 17-95 (162)
25 PF00699 Urease_beta: Urease b 47.1 34 0.00074 26.9 4.0 51 21-72 17-92 (100)
26 PRK13986 urease subunit alpha; 46.3 39 0.00085 30.1 4.8 54 20-74 122-200 (225)
27 PRK13192 bifunctional urease s 44.8 42 0.00091 29.6 4.7 52 21-73 127-203 (208)
28 PF12099 DUF3575: Protein of u 41.0 27 0.00059 29.9 3.0 60 1-62 1-60 (189)
29 PF11142 DUF2917: Protein of u 37.9 35 0.00076 24.1 2.7 25 47-71 2-29 (63)
30 PF00947 Pico_P2A: Picornaviru 35.7 16 0.00036 29.8 0.7 18 82-99 83-100 (127)
31 cd05468 pVHL von Hippel-Landau 31.3 1.1E+02 0.0024 24.9 5.0 46 23-73 7-57 (141)
32 PF05991 NYN_YacP: YacP-like N 30.6 16 0.00036 30.5 -0.0 10 125-134 2-11 (166)
33 TIGR03096 nitroso_cyanin nitro 30.1 1.3E+02 0.0029 24.7 5.2 28 46-77 93-120 (135)
34 PHA03094 dUTPase; Provisional 28.7 50 0.0011 27.0 2.5 30 46-77 35-70 (144)
35 PHA02706 hypothetical protein; 26.2 83 0.0018 21.8 2.8 32 1-32 1-32 (58)
36 PF06282 DUF1036: Protein of u 23.0 1.3E+02 0.0028 23.7 3.8 34 24-57 3-44 (115)
37 PF02066 Metallothio_11: Metal 20.3 34 0.00074 23.7 0.0 27 8-34 3-29 (55)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=2.5e-80 Score=539.77 Aligned_cols=202 Identities=43% Similarity=0.963 Sum_probs=191.7
Q ss_pred EEEEEeCCCCceeeeecC--------CCCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceec
Q 047119 26 VFEVQNNCSYTVWAAANP--------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYC 97 (233)
Q Consensus 26 t~tv~N~C~~tVwp~~~p--------~~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C 97 (233)
+|||+|||+||||||+++ .+||+|+||++++|++|++ | +|||||||||++|+. |+++|+||||+|.++|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~-W-sGriWaRTgC~~~~~-g~~~C~TGDCgg~l~C 77 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSG-W-SGRFWGRTGCSFDSS-GKGSCATGDCGGGLEC 77 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCC-c-ceeeeeccCCCCCCC-CccccccCCCCCeeec
Confidence 599999999999999975 4799999999999999999 9 899999999999987 9999999999999999
Q ss_pred cCC-CCCCcceeEEEeeCCCCccceeeecccccCCceeeeecCC--CccCCccCccccccCCCcCCccC------CCccC
Q 047119 98 VSD-GAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSS--GCNKVIKCRGDINGLCPTELRHP------GGCNH 168 (233)
Q Consensus 98 ~~~-g~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~g--~C~~~~~C~~dln~~CP~~l~~~------~gC~S 168 (233)
++. |+||+|||||||++.+++|||||||||||||||+|.|+++ .| +.++|.+|||+.||.|||++ .||+|
T Consensus 78 ~g~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~S 156 (219)
T cd09218 78 NGAGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKS 156 (219)
T ss_pred CCCCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecC
Confidence 974 5799999999998877899999999999999999999763 69 99999999999999999986 27999
Q ss_pred CccccCCCCcccCCCCCCCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEec
Q 047119 169 PCSVLKNDQFCCTCSNSTATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFC 232 (233)
Q Consensus 169 ~C~~~~~~~~CC~g~~~~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtFC 232 (233)
+|++|++|||||+|+|++|++|+|+ .||++||++||+||+|||||++++|+|+++++|+||||
T Consensus 157 aC~~f~~~~~CC~g~~~~p~~C~pt-~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 157 ACLAFNTDEYCCRGAYGTPETCKPT-TYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HHHhhCCccceecCCCCCCCcCCCc-chhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999999 99999999999999999999999999998899999998
No 2
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=9.8e-80 Score=538.06 Aligned_cols=202 Identities=39% Similarity=0.800 Sum_probs=187.9
Q ss_pred EEEEeCCCCceeeeecC-----------CCCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCce
Q 047119 27 FEVQNNCSYTVWAAANP-----------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVL 95 (233)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-----------~~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l 95 (233)
|||+|||+||||||+++ .+||+|+||++++|.+|++ |++|||||||||++|+.+|+++|+||||||.+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~-w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDN-WTAGRIWARTGCDFSDNPGPFSCLTGGCGGGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCC-CcccceeccCCCCCCCCCCCCCcccCCCCcee
Confidence 79999999999999863 3799999999999999999 94599999999999953489999999999999
Q ss_pred eccCCCCCCcceeEEEeeCCCCccceeeecccccCCceeeeecCCCccCCccCccccccCCCcCCccC-------CCccC
Q 047119 96 YCVSDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKVIKCRGDINGLCPTELRHP-------GGCNH 168 (233)
Q Consensus 96 ~C~~~g~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~g~C~~~~~C~~dln~~CP~~l~~~-------~gC~S 168 (233)
+|++.|.||+|||||+|++. ++|||||||||||||||+|.|.. .| +..+|.+|||..||.||||+ .||+|
T Consensus 80 ~C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~S 156 (229)
T cd09219 80 TCENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCIS 156 (229)
T ss_pred ecCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecC
Confidence 99987899999999999976 78999999999999999999954 79 99999999999999999985 37999
Q ss_pred Cccc-cCC--CCcccCCCCCCCCCCCC--ChhhHHHHHhhCcccccccCCCCC--ceeecCC--CCceEEEecC
Q 047119 169 PCSV-LKN--DQFCCTCSNSTATNCGP--TTAYFKIFKDLCPDAYSYALDDAT--STFTCPT--GTDYKVVFCP 233 (233)
Q Consensus 169 ~C~~-~~~--~~~CC~g~~~~~~~C~p--~~~ys~~fK~~CP~AYsya~Dd~~--st~tC~~--~~~y~VtFCP 233 (233)
+|++ |+. |||||+|.|++|++|+| + +||++||++||+||||||||++ ++|+|++ +++|+|+|||
T Consensus 157 aC~a~~~~~~~~yCC~g~~~~p~~C~p~~t-~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 157 PCNRDKNHDDSPSCCTGSHNKPETCPQSGV-GNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred HhhhhccCCCCcccccCCCCCcCCCCCCcc-cHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999 655 99999999999999999 6 8999999999999999999999 6799998 7999999998
No 3
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.5e-79 Score=534.78 Aligned_cols=203 Identities=53% Similarity=1.111 Sum_probs=192.3
Q ss_pred EEEEeCCCCceeeeecC-------CCCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceeccC
Q 047119 27 FEVQNNCSYTVWAAANP-------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCVS 99 (233)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~~ 99 (233)
|||+|+|+||||||+++ ++||+|+||+++++++|++ |++|||||||||+++++ |+++|+||||+|.++|++
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~-w~sGriW~RtgC~~d~~-G~~~C~TGdCgG~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPG-TKMGRIWARTGCNFDAS-GRGRCATGDCGGVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCC-CccceEecccCCCcCCC-CccccccCCCCCeeecCC
Confidence 79999999999999975 3799999999999999999 86699999999999987 999999999999999998
Q ss_pred C-CCCCcceeEEEeeCCCCccceeeecccccCCceeeeecC--CCccCCccCccccccCCCcCCccC-----CCccCCcc
Q 047119 100 D-GAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTS--SGCNKVIKCRGDINGLCPTELRHP-----GGCNHPCS 171 (233)
Q Consensus 100 ~-g~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~--g~C~~~~~C~~dln~~CP~~l~~~-----~gC~S~C~ 171 (233)
. ++||+|||||+|++.+++|||||||||||||||+|.|++ +.| +..+|.+|||+.||+|||++ .||+|+|+
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~ 157 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACT 157 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhh
Confidence 4 589999999999887789999999999999999999974 359 99999999999999999996 37999999
Q ss_pred ccCCCCcccCCCCCCCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEecC
Q 047119 172 VLKNDQFCCTCSNSTATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233 (233)
Q Consensus 172 ~~~~~~~CC~g~~~~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtFCP 233 (233)
+|++|||||+|.|++|++|+|+ .|+++||++||+||+||+||++++|+|+++++|+|+|||
T Consensus 158 ~f~~~~yCC~g~~~~~~~C~pt-~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 158 VFGTDQYCCTGGQNNPETCPPT-NYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred ccCCCcceecCCCCCCCCCCCc-chhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999999999999999999 999999999999999999999999999998999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=8e-76 Score=510.62 Aligned_cols=198 Identities=48% Similarity=1.049 Sum_probs=164.2
Q ss_pred eCCCCceeeeecCC--------CCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceeccC-CC
Q 047119 31 NNCSYTVWAAANPS--------GGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCVS-DG 101 (233)
Q Consensus 31 N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~~-~g 101 (233)
|+|+||||||+++. +|++|+||+++++.+|++ | +|||||||||++++. |.++|+||||+|+++|++ .+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~-W-sGriW~RTgC~~~~~-g~~~C~TGdCgg~~~C~~~~~ 77 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAG-W-SGRIWARTGCSFDGG-GRGSCATGDCGGRLECNGAGG 77 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TT-E-SEEEEEEEEEEEETT-SBEEEEES-STTBSSSSS---
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCcc-c-cceeeecCCCcCCCC-CCcccccCCCCcccccccccC
Confidence 99999999999763 589999999999999999 9 899999999999987 899999999999999998 46
Q ss_pred CCCcceeEEEeeCCCCccceeeecccccCCceeeeec-CCCccCCccCccccccCCCcCCccC-----CCccCCccccCC
Q 047119 102 APPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGT-SSGCNKVIKCRGDINGLCPTELRHP-----GGCNHPCSVLKN 175 (233)
Q Consensus 102 ~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~-~g~C~~~~~C~~dln~~CP~~l~~~-----~gC~S~C~~~~~ 175 (233)
.+|+|||||+|++.+++|||||||||||||||+|+|. +..| +..+|.+||+..||.|||+. .+|+|+|.++++
T Consensus 78 ~~P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~ 156 (213)
T PF00314_consen 78 SPPATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNT 156 (213)
T ss_dssp -SS--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-S
T ss_pred cccceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccC
Confidence 8999999999987788999999999999999999999 4689 99999999999999999984 479999999999
Q ss_pred CCcccCCCCCCCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEecC
Q 047119 176 DQFCCTCSNSTATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233 (233)
Q Consensus 176 ~~~CC~g~~~~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtFCP 233 (233)
|||||+|+|+++++|+++ .|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 157 ~~~CC~g~~~~~~~C~~~-~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 157 DEYCCRGAYNTPDTCPPT-NYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHHTTCCS-TTSCS----HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CccccccccCCCcccccc-hhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999 999999999999999999999999999999999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=6e-59 Score=387.44 Aligned_cols=149 Identities=48% Similarity=1.001 Sum_probs=136.7
Q ss_pred EEEEeCCCCceeeeecC-------CCCeeecCCceEEEEcCCCCCCcceeeeeecccCCC-CCCCCcCCCCCCCCceecc
Q 047119 27 FEVQNNCSYTVWAAANP-------SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNV-SNGTGKCESGDCNGVLYCV 98 (233)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~-~~g~~~C~TGdCgg~l~C~ 98 (233)
|||+|||+||||||+++ ++||+|+||+++++.+|++ | +|||||||+|++++ . |+++|+||||+|+++|+
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~-w-sGriWgRTgC~~~~~~-g~~~C~TGdCgg~l~C~ 77 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAG-W-QGRIWARTNCSFNANS-GGNACLTGDCNGGLNCQ 77 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCC-C-eEeeecccccccCCCC-CCCCcccCCCCceeecC
Confidence 78999999999999975 4799999999999999999 9 89999999999998 5 89999999999999999
Q ss_pred CCCCCCcceeEEEeeCCCCccceeeecccccCCceeeeecCCCccCCccCccccccCCCcCCccCCCccCCccccCCCCc
Q 047119 99 SDGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQF 178 (233)
Q Consensus 99 ~~g~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~g~C~~~~~C~~dln~~CP~~l~~~~gC~S~C~~~~~~~~ 178 (233)
+.|.||+|||||+|++.+++|||||||||||||||+|.|+++.| +..+|.
T Consensus 78 g~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~----------------------------- 127 (157)
T cd09215 78 GTGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICA----------------------------- 127 (157)
T ss_pred CCCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCccc-----------------------------
Confidence 87799999999999877788999999999999999999976556 544432
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEec
Q 047119 179 CCTCSNSTATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFC 232 (233)
Q Consensus 179 CC~g~~~~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtFC 232 (233)
+||+||+|||||++++|+|+++++|+|+||
T Consensus 128 ------------------------~Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 ------------------------ACPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ------------------------cCccccccCCCCCccceECCCCCCEEEEeC
Confidence 189999999999999999999899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=3.4e-54 Score=357.18 Aligned_cols=150 Identities=54% Similarity=1.185 Sum_probs=136.1
Q ss_pred EEEEeCCCCceeeeecC-CCCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceeccCCCCCCc
Q 047119 27 FEVQNNCSYTVWAAANP-SGGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCVSDGAPPV 105 (233)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-~~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~~~g~ppa 105 (233)
|+|+|||+||||||++| ++||+|+||+++++++|++.| +|||||||+|+++++ |+++|+||||+|+++|.+.|.||+
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~-g~~~C~TGdCgg~l~C~~~g~pp~ 78 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDAS-GRGSCQTGDCGGVLSCTGSGKPPA 78 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCC-CCCcccccCCCCeeecCCCCCCCc
Confidence 68999999999999998 689999999999999999757 899999999999988 999999999999999998789999
Q ss_pred ceeEEEeeCCCCccceeeecccccCCceeeeecCCCccCCccCccccccCCCcCCccCCCccCCccccCCCCcccCCCCC
Q 047119 106 ILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQFCCTCSNS 185 (233)
Q Consensus 106 TlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~g~C~~~~~C~~dln~~CP~~l~~~~gC~S~C~~~~~~~~CC~g~~~ 185 (233)
||+||+|+. +++||||||+||||||||+|+|++++| +.++|..
T Consensus 79 Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~----------------------------------- 121 (151)
T cd09217 79 TLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA----------------------------------- 121 (151)
T ss_pred eeEEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC-----------------------------------
Confidence 999999986 578999999999999999999986557 5444321
Q ss_pred CCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEecC
Q 047119 186 TATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVFCP 233 (233)
Q Consensus 186 ~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtFCP 233 (233)
. ||+||+|++|| .++++|+.+++|+|+|||
T Consensus 122 ---------d--------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N--------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C--------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 89999999995 689999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=2.4e-49 Score=328.76 Aligned_cols=144 Identities=38% Similarity=0.687 Sum_probs=127.7
Q ss_pred EEEEeCCCCceeeeecCC--------CCeeecCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceecc
Q 047119 27 FEVQNNCSYTVWAAANPS--------GGRELYQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCV 98 (233)
Q Consensus 27 ~tv~N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~ 98 (233)
|||+|||+|||||++++. +|++|+||++++|++|++ | +|||||||+|+++.. |++.|+||||++ +.|.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~-w-sGRIW~RtgC~~~~~-g~g~C~TGdcgg-~~c~ 76 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKG-F-SGRIWFRTGCSMDFS-GTTGCLTQDPGV-VNPT 76 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCC-c-eEEEEEecCCcccCC-CCccccccCCCC-cccC
Confidence 689999999999999752 799999999999999999 9 899999999999987 889999999998 6776
Q ss_pred C-CCCCCcceeEEEeeCCCCccceeeecccccCCceeeeecCCCccCCccCccccccCCCcCCccCCCccCCccccCCCC
Q 047119 99 S-DGAPPVILAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTSSGCNKVIKCRGDINGLCPTELRHPGGCNHPCSVLKNDQ 177 (233)
Q Consensus 99 ~-~g~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~g~C~~~~~C~~dln~~CP~~l~~~~gC~S~C~~~~~~~ 177 (233)
+ .+.||+|||||||++.+++|||||||||||||||+|+|..+.
T Consensus 77 g~~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~------------------------------------ 120 (153)
T cd08961 77 DPNRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD------------------------------------ 120 (153)
T ss_pred CCCCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC------------------------------------
Confidence 5 568999999999987668899999999999999999996421
Q ss_pred cccCCCCCCCCCCCCChhhHHHHHhhCcccccccCCCCCceeecCCCCceEEEe
Q 047119 178 FCCTCSNSTATNCGPTTAYFKIFKDLCPDAYSYALDDATSTFTCPTGTDYKVVF 231 (233)
Q Consensus 178 ~CC~g~~~~~~~C~p~~~ys~~fK~~CP~AYsya~Dd~~st~tC~~~~~y~VtF 231 (233)
..|++. . |||+|||||+.++|+|+.+++|.|+|
T Consensus 121 ----------g~C~~~-~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 121 ----------GTCLST-G----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ----------CCcccc-c----------cccccCCCCccceEEcCCCCceEEeC
Confidence 123333 1 89999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.18 E-value=5.5e-05 Score=63.37 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=34.4
Q ss_pred CCCcceeEEEeeCCCCccceeeecccccCC---ceeeeecCCCccCCcc
Q 047119 102 APPVILAEYSFQGVNNMGFFDVSVVDGFNV---PIEFKGTSSGCNKVIK 147 (233)
Q Consensus 102 ~ppaTlaEftl~~~~~~d~YDVSlVdG~Nl---P~~i~P~~g~C~~~~~ 147 (233)
..|.|..||+|...+.+.|||+|-|.|.-. +|.|.|.+..| +++.
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C-p~I~ 118 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC-PSIV 118 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC-CceE
Confidence 358899999998656789999999999633 47777776666 4443
No 9
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=87.80 E-value=1.2 Score=42.44 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceeccC-C--CCCCc----ceeEEEeeCCCCccceee
Q 047119 51 QGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCVS-D--GAPPV----ILAEYSFQGVNNMGFFDV 123 (233)
Q Consensus 51 ~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~~-~--g~ppa----TlaEftl~~~~~~d~YDV 123 (233)
+|++.+++||.- + +||||=..+=.. .|. ...+ |-.+.-.. . .-|-. ..+|||++. .+-|-++
T Consensus 62 ~G~~~titiP~i-~-sgRIyfS~g~~L-----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~ 130 (369)
T cd09220 62 PGSTTTVTIPIL-A-GGRIWFSVDDKL-----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANI 130 (369)
T ss_pred CCCceeEEcccc-c-ceEEEEEcCCeE-----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecc
Confidence 578889999985 7 899995543211 111 1111 21111111 0 01111 347999984 4578999
Q ss_pred ecccccCCceeeeec
Q 047119 124 SVVDGFNVPIEFKGT 138 (233)
Q Consensus 124 SlVdG~NlP~~i~P~ 138 (233)
|.||-|.+||.|+-.
T Consensus 131 S~VD~~~~P~~l~l~ 145 (369)
T cd09220 131 SYVDFVGLPLGLSLT 145 (369)
T ss_pred cceeeeccCeEEEEE
Confidence 999999999999754
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.00 E-value=1.9 Score=33.39 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHHHHhcc-ccceEE
Q 047119 1 MSFSNFLFLSALSSFILWSTS-IDATVF 27 (233)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~-a~a~t~ 27 (233)
|--|.||||.+||+++|++++ ++++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 664566656555554444443 445544
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=73.65 E-value=3.6 Score=38.41 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=26.5
Q ss_pred eeEEEeeCCCCccceeeecccccCCceeeeecC
Q 047119 107 LAEYSFQGVNNMGFFDVSVVDGFNVPIEFKGTS 139 (233)
Q Consensus 107 laEftl~~~~~~d~YDVSlVdG~NlP~~i~P~~ 139 (233)
.+|||++ +..-|-++|.||-|.+||.|+-.+
T Consensus 125 f~EFT~n--~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYN--ATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEec--CCceEecccceeeeccCeEEEEEc
Confidence 4799998 367899999999999999998654
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=73.29 E-value=2.4 Score=39.55 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=26.8
Q ss_pred CChhhHHHHHhhCc--ccccccCCCCC---ceeecCCCCceEEE
Q 047119 192 PTTAYFKIFKDLCP--DAYSYALDDAT---STFTCPTGTDYKVV 230 (233)
Q Consensus 192 p~~~ys~~fK~~CP--~AYsya~Dd~~---st~tC~~~~~y~Vt 230 (233)
|++.|++++++.-. .||.|||||-. ++.+-.....++|+
T Consensus 274 ~tN~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 274 PANYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred CchHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 44699999999997 79999999842 33333333444544
No 13
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=71.10 E-value=2.9 Score=39.61 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=45.7
Q ss_pred cCCceEEEEcCCCCCCcceeeeeecccCCCCCCCCcCCCCCCCCceeccC---CCCCCc----ceeEEEeeCCCCcccee
Q 047119 50 YQGQSWIVNTDPNFNDIGRIWARINCRFNVSNGTGKCESGDCNGVLYCVS---DGAPPV----ILAEYSFQGVNNMGFFD 122 (233)
Q Consensus 50 ~~G~s~s~~vp~~~w~sGriW~RtgC~~~~~~g~~~C~TGdCgg~l~C~~---~g~ppa----TlaEftl~~~~~~d~YD 122 (233)
++|++.++++|. + +||||=..+=.. .|.-.. +..+.-.. ..-|-. ..+|||++. ..-|-+
T Consensus 60 ~~G~~~tvtiP~--~-sgRiyfS~g~~L-----~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N 126 (353)
T cd09216 60 SPGDTTTVLPPR--M-SGRIYFSLGSKL-----RFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCN 126 (353)
T ss_pred CCCCceEEcccc--c-CcEEEEEcCCee-----EEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEec
Confidence 457778888885 4 899996543110 111111 11121111 011211 347999983 456899
Q ss_pred eecccccCCceeeeecC
Q 047119 123 VSVVDGFNVPIEFKGTS 139 (233)
Q Consensus 123 VSlVdG~NlP~~i~P~~ 139 (233)
+|.||-|.+||.|+-.+
T Consensus 127 ~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 127 TTQVDMFSAPLAIGLRG 143 (353)
T ss_pred ccceeeeccceEEEEec
Confidence 99999999999997553
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=67.48 E-value=12 Score=29.41 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=38.3
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
+.....+|.|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 94 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI-GGNRRIYGFN 94 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 34567899999999999999962 2 3556889999999986542 0145676654
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=66.67 E-value=13 Score=29.25 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=37.9
Q ss_pred cccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 21 SIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 21 ~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
.....+|+|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-~G~r~v~G~~ 94 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPI-GGKRRVYGFN 94 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEc-cCceEEEccC
Confidence 4557899999999999999962 2 4567889999999986542 0145666553
No 16
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=63.42 E-value=8.2 Score=36.60 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.6
Q ss_pred CChhhHHHHHhhCc--ccccccCCCC
Q 047119 192 PTTAYFKIFKDLCP--DAYSYALDDA 215 (233)
Q Consensus 192 p~~~ys~~fK~~CP--~AYsya~Dd~ 215 (233)
+++.|++++++.=. .||.|||||-
T Consensus 308 ~tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 308 VTNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred CchHHHHHHHHhccCCCeeecCcccc
Confidence 55699999999887 6899999994
No 17
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=62.25 E-value=9.7 Score=36.31 Aligned_cols=24 Identities=33% Similarity=0.718 Sum_probs=21.0
Q ss_pred CChhhHHHHHhhCc--ccccccCCCC
Q 047119 192 PTTAYFKIFKDLCP--DAYSYALDDA 215 (233)
Q Consensus 192 p~~~ys~~fK~~CP--~AYsya~Dd~ 215 (233)
+++.|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 44699999999988 7899999996
No 18
>PRK13202 ureB urease subunit beta; Reviewed
Probab=61.78 E-value=19 Score=28.38 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=36.4
Q ss_pred cceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 23 DATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 23 ~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
...+|+|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 95 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL-GGRREVPGLT 95 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc-cCCeEEEcCC
Confidence 46799999999999999962 2 3556789999999986532 0135676654
No 19
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=60.39 E-value=12 Score=26.13 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHhccccceEEEEEeCCCCc--eeeee
Q 047119 3 FSNFLFLSALSSFILWSTSIDATVFEVQNNCSYT--VWAAA 41 (233)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~a~a~t~tv~N~C~~t--Vwp~~ 41 (233)
|++|+.+..+.++....++-.+...+=.|+|+|+ +-|++
T Consensus 1 M~~~~K~~~~a~vl~~Lt~CTG~v~Nk~knCsYDYllHPAi 41 (56)
T PF13978_consen 1 MKKFIKIAVVAAVLATLTACTGHVENKEKNCSYDYLLHPAI 41 (56)
T ss_pred ChhHHHHHHHHHHHHHHhhccceeeccCCCCcceeeecchh
Confidence 3566666555444444556678888999999987 34444
No 20
>PRK13203 ureB urease subunit beta; Reviewed
Probab=57.22 E-value=21 Score=28.12 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=37.6
Q ss_pred cccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 21 SIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 21 ~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
.-...+++|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~n 94 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPL-AGARRVYGFR 94 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 4567899999999999999962 2 4556789999999986542 0135666543
No 21
>PRK13201 ureB urease subunit beta; Reviewed
Probab=56.40 E-value=23 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=38.3
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
+.....+|.|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~i-gG~r~V~Gfn 94 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEY-AGKRKIFGFR 94 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 34567899999999999999962 2 4556889999999986542 0145676654
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=55.76 E-value=23 Score=29.89 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.1
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeeec
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARIN 74 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rtg 74 (233)
++....+|+|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.+
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~-gG~r~V~Gfng 118 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPF-AGKRFIFGFNN 118 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEEccCc
Confidence 34567899999999999999962 2 4557889999999986532 01457776543
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=51.36 E-value=30 Score=29.18 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=38.8
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeeec
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARIN 74 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rtg 74 (233)
++....+|.|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.+
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~-gG~r~V~Gfng 123 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPF-GGKQTLYGFNN 123 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEc-cCceEEEccCc
Confidence 34567899999999999999962 2 4557889999999986532 01457776543
No 24
>PRK13205 ureB urease subunit beta; Reviewed
Probab=50.05 E-value=33 Score=28.98 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=38.6
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeeec
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARIN 74 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rtg 74 (233)
++....+|+|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.+
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~i-gG~R~V~Gfng 95 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAI-GGDRIVAGFRD 95 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccCc
Confidence 44567899999999999999962 2 3556789999999986432 01356666543
No 25
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=47.06 E-value=34 Score=26.86 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=30.7
Q ss_pred cccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeee
Q 047119 21 SIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWAR 72 (233)
Q Consensus 21 ~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~R 72 (233)
+-...+|+|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~-gG~r~v~G~ 92 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPI-GGNRRVYGF 92 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE--STT-EE-ST
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEc-cCCeEEEcC
Confidence 4456899999999999999962 2 4556789999999986432 013556554
No 26
>PRK13986 urease subunit alpha; Provisional
Probab=46.26 E-value=39 Score=30.12 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=39.3
Q ss_pred ccccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeeec
Q 047119 20 TSIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARIN 74 (233)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rtg 74 (233)
++-...+++|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.|
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~-gG~r~v~G~ng 200 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDI-GGNRRIFGFNA 200 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEecCCc
Confidence 34567899999999999999962 2 4567889999999986432 01467776543
No 27
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=44.79 E-value=42 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=37.6
Q ss_pred cccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCceEEEEcCCCCCCcceeeeee
Q 047119 21 SIDATVFEVQNNCSYTVWAAAN------------------------P-SGGRELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 21 ~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
+-...+++|+|.-.-+|.+|+. | ++..+.+||+++++++-+- =...+|+|-.
T Consensus 127 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 203 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPI-GGARVVIGFN 203 (208)
T ss_pred CCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEEccc
Confidence 4457899999999999999962 2 4556889999999986432 0145676643
No 28
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=40.98 E-value=27 Score=29.90 Aligned_cols=60 Identities=28% Similarity=0.424 Sum_probs=37.3
Q ss_pred CCchhHHHHHHHHHHHHHhccccceEEEEEeCCCCceeeeecCCCCeeecCCceEEEEcCCC
Q 047119 1 MSFSNFLFLSALSSFILWSTSIDATVFEVQNNCSYTVWAAANPSGGRELYQGQSWIVNTDPN 62 (233)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~a~a~t~tv~N~C~~tVwp~~~p~~g~~L~~G~s~s~~vp~~ 62 (233)
|....+||+.+|+++.+....+.+..+.|+.|=-+ |....|+-|.+..=+..+|++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~q~~avKtN~l~--~~~~tpNlg~E~~l~~~~Sl~l~~~ 60 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSLSPSNARAQKVAVKTNLLY--WATGTPNLGVEFALGNRWSLDLSGS 60 (189)
T ss_pred CceehHHHHHHHHHHHhccccccceEEEEEeHHhH--HHHhCCceEEEEEECCCEEEEEEEE
Confidence 55556665555444433223456788888877443 4455677777777777888877653
No 29
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=37.89 E-value=35 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=17.4
Q ss_pred eeecCCceEEEEcCCCCC---Ccceeee
Q 047119 47 RELYQGQSWIVNTDPNFN---DIGRIWA 71 (233)
Q Consensus 47 ~~L~~G~s~s~~vp~~~w---~sGriW~ 71 (233)
|.|.||+..++.+..+.. .+|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 678889888888776511 3577773
No 30
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=35.71 E-value=16 Score=29.79 Aligned_cols=18 Identities=50% Similarity=1.141 Sum_probs=14.1
Q ss_pred CCCcCCCCCCCCceeccC
Q 047119 82 GTGKCESGDCNGVLYCVS 99 (233)
Q Consensus 82 g~~~C~TGdCgg~l~C~~ 99 (233)
|.+.|+-|||||.|.|+-
T Consensus 83 g~Gp~~PGdCGg~L~C~H 100 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH 100 (127)
T ss_dssp EE-SSSTT-TCSEEEETT
T ss_pred ecccCCCCCCCceeEeCC
Confidence 567899999999999974
No 31
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=31.31 E-value=1.1e+02 Score=24.95 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=32.5
Q ss_pred cceEEEEEeCCCCceeeeecCCCC-----eeecCCceEEEEcCCCCCCcceeeeee
Q 047119 23 DATVFEVQNNCSYTVWAAANPSGG-----RELYQGQSWIVNTDPNFNDIGRIWARI 73 (233)
Q Consensus 23 ~a~t~tv~N~C~~tVwp~~~p~~g-----~~L~~G~s~s~~vp~~~w~sGriW~Rt 73 (233)
....|+|+|+.+.+|-+-++--.| ..|+||+.+.+.- + .|..|=-.
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~T----y-~~H~W~~r 57 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQNT----Y-VGHPWLFR 57 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeecc----c-CCCcEEEE
Confidence 357899999999999888764222 4799999876542 3 45666444
No 32
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=30.64 E-value=16 Score=30.47 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=7.7
Q ss_pred cccccCCcee
Q 047119 125 VVDGFNVPIE 134 (233)
Q Consensus 125 lVdG~NlP~~ 134 (233)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6999998544
No 33
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=30.10 E-value=1.3e+02 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=20.4
Q ss_pred CeeecCCceEEEEcCCCCCCcceeeeeecccC
Q 047119 46 GRELYQGQSWIVNTDPNFNDIGRIWARINCRF 77 (233)
Q Consensus 46 g~~L~~G~s~s~~vp~~~w~sGriW~RtgC~~ 77 (233)
...|+||++.+++++.. - .|++| --|+.
T Consensus 93 s~~I~pGet~TitF~ad-K-pG~Y~--y~C~~ 120 (135)
T TIGR03096 93 SEVIKAGETKTISFKAD-K-AGAFT--IWCQL 120 (135)
T ss_pred ceEECCCCeEEEEEECC-C-CEEEE--EeCCC
Confidence 35699999999988766 3 68887 44543
No 34
>PHA03094 dUTPase; Provisional
Probab=28.69 E-value=50 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=23.9
Q ss_pred CeeecCCceEE------EEcCCCCCCcceeeeeecccC
Q 047119 46 GRELYQGQSWI------VNTDPNFNDIGRIWARINCRF 77 (233)
Q Consensus 46 g~~L~~G~s~s------~~vp~~~w~sGriW~RtgC~~ 77 (233)
.+.|.||+... +.+|.+ | .|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g-~-~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKF-C-YGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCC-E-EEEEEccccccc
Confidence 46788888776 789999 8 699999987543
No 35
>PHA02706 hypothetical protein; Provisional
Probab=26.20 E-value=83 Score=21.75 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=20.0
Q ss_pred CCchhHHHHHHHHHHHHHhccccceEEEEEeC
Q 047119 1 MSFSNFLFLSALSSFILWSTSIDATVFEVQNN 32 (233)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~a~a~t~tv~N~ 32 (233)
|-|-|.|+..++++..|-.++.--.|+.+.|.
T Consensus 1 mq~e~tllviaiimmllgi~siiidtvifina 32 (58)
T PHA02706 1 MQFENTLLVIAIIMMLLGIASIIIDTVIFINA 32 (58)
T ss_pred CcchhhhHHHHHHHHHHhhHHHhhheeeeeeh
Confidence 66778887777766555444433456777773
No 36
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.99 E-value=1.3e+02 Score=23.73 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=26.5
Q ss_pred ceEEEEEeCCCCceeeeec-C-------CCCeeecCCceEEE
Q 047119 24 ATVFEVQNNCSYTVWAAAN-P-------SGGRELYQGQSWIV 57 (233)
Q Consensus 24 a~t~tv~N~C~~tVwp~~~-p-------~~g~~L~~G~s~s~ 57 (233)
.+-|+|-|+-++.|++++. . .|-++|+||+-..+
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 3568999999999999973 1 34578999987665
No 37
>PF02066 Metallothio_11: Metallothionein family 11; InterPro: IPR000869 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, nickel, etc. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects, e.g. low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Fungi-IV (family 11) MTs are proteins of about 55-56 residues, with 9 conserved cysteines. Its members are recognised by the sequence pattern C-X-K-C-x-C-x(2)-C-K-C. The taxonomic range of the members extends to ascomycotina. The protein contains a number of unusual histidine and phenylalanine residues conserved in the N-terminal part of the sequence. This fragment does not contain any Cys. The protein binds to copper ions.; GO: 0005507 copper ion binding
Probab=20.28 E-value=34 Score=23.67 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhccccceEEEEEeCCC
Q 047119 8 FLSALSSFILWSTSIDATVFEVQNNCS 34 (233)
Q Consensus 8 ~~~~l~~~~~~~~~a~a~t~tv~N~C~ 34 (233)
|.+|++-+.|+.....-..-.++|+|=
T Consensus 3 FtsAmFGaSLi~s~~~~~Kh~LVNnCC 29 (55)
T PF02066_consen 3 FTSAMFGASLISSTSTQNKHNLVNNCC 29 (55)
T ss_pred chHhhhhhHHhhccccchhhhhhhhhc
Confidence 345566665554444344556788874
Done!